PDB 8CEO
ELECTRON MICROSCOPY0 chains80 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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1 domainAll Domains (80)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e8ceo01 | 0:503-723 | Helicase_C_2 | 2004 → 2004.1 → 2004.1.1 |
| 2 | 0 | e8ceo02 | 0:1-250,0:438-502,0:724-752 | DEAD_2 | 2004 → 2004.1 → 2004.1.1 |
| 3 | 0 | e8ceo03 | 0:247-441 | HBB | 3636 → 3636.1 → 3636.1.1 |
| 4 | 2 | e8ceo21 | 2:447-508 | Tfb2_C | 4340 → 4340.1 → 4340.1.1 |
| 5 | 3 | e8ceo31 | 3:9-79 | zf-C3HC4_5 | 376 → 376.1 → 376.1.1 |
| 6 | 3 | e8ceo32 | 3:80-139 | MAT1 | 386 → 386.1 → 386.1.1 |
| 7 | 4 | e8ceo41 | 4:21-285 | Tfb4 | 2006 → 2006.1 → 2006.1.6 |
| 8 | 4 | e8ceo42 | 4:286-328 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 9 | 5 | e8ceo51 | 5:2-66 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 10 | 6 | e8ceo61 | 6:308-374 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 11 | 6 | e8ceo62 | 6:107-307 | Ssl1 | 2006 → 2006.1 → 2006.1.6 |
| 12 | 6 | e8ceo63 | 6:375-457 | C1_4 | 376 → 376.1 → 376.1.2 |
| 13 | 7 | e8ceo71 | 7:294-538 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 14 | 7 | e8ceo72 | 7:549-785 | Helicase_C, ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 15 | a | e8ceoa1 | a:3-52,a:100-206,a:277-288 | Med6 | 3195 → 3195.1 → 3195.1.1 |
| 16 | A | e8ceoA1 | A:1060-1102,A:1301-1445 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 17 | A | e8ceoA2 | A:375-435 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 18 | A | e8ceoA3 | A:663-871 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 19 | A | e8ceoA4 | A:2-336 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 20 | A | e8ceoA5 | A:337-374,A:436-519 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 21 | A | e8ceoA6 | A:1103-1131,A:1243-1300 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 22 | A | e8ceoA7 | A:872-1059 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 23 | A | e8ceoA8 | A:1132-1242 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 24 | A | e8ceoA9 | A:520-662 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 25 | b | e8ceob1 | b:22-213 | Med8 | 3560 → 3560.1 → 3560.1.1 |
| 26 | B | e8ceoB1 | B:219-404 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 27 | B | e8ceoB2 | B:814-850,B:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 28 | B | e8ceoB3 | B:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 29 | B | e8ceoB4 | B:1098-1224 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 30 | B | e8ceoB5 | B:542-630 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 31 | B | e8ceoB6 | B:631-813 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 32 | B | e8ceoB7 | B:18-218,B:405-541 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 33 | c | e8ceoc1 | c:1-111 | Med11 | 3712 → 3712.1 → 3712.1.1 |
| 34 | C | e8ceoC1 | C:38-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 35 | C | e8ceoC2 | C:3-37,C:173-268 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 36 | d | e8ceod1 | d:182-687 | 3561.1.1.0 | 3561 → 3561.1 → 3561.1.1 |
| 37 | D | e8ceoD1 | D:11-71,D:131-220 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 38 | e | e8ceoe1 | e:1-107,e:159-302 | Med18 | 868 → 868.1 → 868.1.1 |
| 39 | E | e8ceoE1 | E:2-143 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 40 | E | e8ceoE2 | E:144-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 41 | f | e8ceof1 | f:2-210 | Med20 | 868 → 868.1 → 868.1.1 |
| 42 | F | e8ceoF1 | F:34-155 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 43 | g | e8ceog1 | g:2-118 | Med22 | 3559 → 3559.1 → 3559.1.1 |
| 44 | G | e8ceoG1 | G:69-171 | S1 | 2 → 2.1 → 2.1.1 |
| 45 | G | e8ceoG2 | G:1-68 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 46 | H | e8ceoH1 | H:2-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 47 | i | e8ceoi1 | i:9-83 | Med7 | 3548 → 3548.1 → 3548.1.1 |
| 48 | i | e8ceoi2 | i:111-214 | Med7 | 4207 → 4207.1 → 4207.1.2 |
| 49 | I | e8ceoI1 | I:50-117 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 50 | I | e8ceoI2 | I:2-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 51 | J | e8ceoJ1 | J:1-69 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 52 | K | e8ceoK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 53 | L | e8ceoL1 | L:26-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 54 | M | e8ceoM1 | M:78-230 | TFIIB | 101 → 101.1 → 101.1.10 |
| 55 | M | e8ceoM2 | M:14-58 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 56 | M | e8ceoM3 | M:231-342 | TFIIB | 101 → 101.1 → 101.1.10 |
| 57 | n | e8ceon1 | n:3-138 | Med21 | 4207 → 4207.1 → 4207.1.1 |
| 58 | o | e8ceoo1 | o:17-126 | Med31 | 3548 → 3548.1 → 3548.1.1 |
| 59 | O | e8ceoO1 | O:157-240 | TBP | 331 → 331.1 → 331.1.1 |
| 60 | O | e8ceoO2 | O:60-156 | TBP | 331 → 331.1 → 331.1.1 |
| 61 | Q | e8ceoQ1 | Q:21-35,Q:97-142,Q:327-415 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 62 | r | e8ceor1 | r:38-134 | Histone | 148 → 148.1 → 148.1.1 |
| 63 | R | e8ceoR1 | R:58-138,R:207-227 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 64 | R | e8ceoR2 | R:291-370 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 65 | s | e8ceos1 | s:21-102 | CENP-T_C | 148 → 148.1 → 148.1.1 |
| 66 | t | e8ceot1 | t:11-119 | Histone,Histone_H2A_C | 148 → 148.1 → 148.1.1 |
| 67 | u | e8ceou1 | u:26-122 | Histone | 148 → 148.1 → 148.1.1 |
| 68 | U | e8ceoU1 | U:3-56 | TFIIA | 104 → 104.1 → 104.1.1 |
| 69 | U | e8ceoU2 | U:229-286 | TFIIA | 74 → 74.1 → 74.1.1 |
| 70 | v | e8ceov1 | v:37-134 | Histone | 148 → 148.1 → 148.1.1 |
| 71 | V | e8ceoV1 | V:5-54 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 72 | V | e8ceoV2 | V:55-122 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 73 | w | e8ceow1 | w:23-102 | CENP-T_C | 148 → 148.1 → 148.1.1 |
| 74 | W | e8ceoW1 | W:1-102,W:173-213 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 75 | W | e8ceoW2 | W:103-172 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 76 | x | e8ceox1 | x:13-118 | Histone,Histone_H2A_C | 148 → 148.1 → 148.1.1 |
| 77 | X | e8ceoX1 | X:188-249 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 78 | X | e8ceoX2 | X:123-187 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 79 | X | e8ceoX3 | X:256-280 | TFA2_E-tether | 101 → 101.1 → 101.1.2 |
| 80 | y | e8ceoy1 | y:28-122 | Histone | 148 → 148.1 → 148.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors