PDB 8CH6
ELECTRON MICROSCOPY0 chains89 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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2 domainsAll Domains (89)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 1 | e8ch611 | 1:14-92 | LSM | 4 → 4.1 → 4.1.1 |
| 2 | 2 | e8ch621 | 2:2-75 | LSM | 4 → 4.1 → 4.1.1 |
| 3 | 3 | e8ch631 | 3:4-79 | LSM | 4 → 4.1 → 4.1.1 |
| 4 | 4 | e8ch641 | 4:20-116 | LSM | 4 → 4.1 → 4.1.1 |
| 5 | 5 | e8ch651 | 5:1-82 | LSM | 4 → 4.1 → 4.1.1 |
| 6 | 8 | e8ch681 | 8:4-89 | LSM | 4 → 4.1 → 4.1.1 |
| 7 | 9 | e8ch691 | 9:4-76 | LSM | 4 → 4.1 → 4.1.1 |
| 8 | a | e8ch6a1 | a:53-810 | PRO8NT,PROCN | 1038 → 1038.1 → 1038.1.1 |
| 9 | a | e8ch6a2 | a:1755-2016 | PRP8_domainIV | 2484 → 2484.1 → 2484.1.1 |
| 10 | a | e8ch6a3 | a:1503-1754 | U6-snRNA_bdg | 2008 → 2008.1 → 2008.1.1 |
| 11 | a | e8ch6a4 | a:1183-1502 | U6-snRNA_bdg,U5_2-snRNA_bdg | 4967 → 4967.1 → 4967.1.1 |
| 12 | a | e8ch6a5 | a:811-1182 | RRM_4 | 304 → 304.48 → 304.48.1 |
| 13 | a | e8ch6a6 | a:2067-2316 | JAB,PROCT | 2492 → 2492.1 → 2492.1.1 |
| 14 | A | e8ch6A1 | A:1-403 | MMS1_N | 5 → 5.1 → 5.1.4 |
| 15 | A | e8ch6A2 | A:442-772 | Beta-prop_RSE1_2nd | 5 → 5.1 → 5.1.4 |
| 16 | A | e8ch6A3 | A:404-441,A:773-1061,A:1068-1114 | CPSF_A | 5 → 5.1 → 5.1.4 |
| 17 | A | e8ch6A4 | A:1115-1197 | CPSF_A | 101 → 101.1 → 101.1.1 |
| 18 | b | e8ch6b1 | b:55-439 | GTP_EFTU,EFTUD2 | 2004 → 2004.1 → 2004.1.1 |
| 19 | b | e8ch6b2 | b:581-659 | EFG_III | 304 → 304.24 → 304.24.1 |
| 20 | b | e8ch6b3 | b:829-952 | EFG_C | 304 → 304.24 → 304.24.1 |
| 21 | b | e8ch6b4 | b:440-580 | GTP_EFTU_D2 | 1 → 1.1 → 1.1.7 |
| 22 | b | e8ch6b5 | b:660-828 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 23 | B | e8ch6B1 | B:10-80 | SF3b10 | 1106 → 1106.1 → 1106.1.1 |
| 24 | c | e8ch6c1 | c:887-993 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 25 | c | e8ch6c2 | c:404-682 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 26 | c | e8ch6c3 | c:994-1125 | 4156.1.1.0 | 4156 → 4156.1 → 4156.1.1 |
| 27 | c | e8ch6c4 | c:1312-1520 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 28 | c | e8ch6c5 | c:1958-2015 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 29 | c | e8ch6c6 | c:1181-1311 | Sec63 | 11 → 11.1 → 11.1.1 |
| 30 | c | e8ch6c7 | c:1825-1957 | 4156.1.1.0 | 4156 → 4156.1 → 4156.1.1 |
| 31 | c | e8ch6c8 | c:683-886 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 32 | c | e8ch6c9 | c:1126-1180 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 33 | c | e8ch6c10 | c:1521-1722 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 34 | c | e8ch6c11 | c:2016-2125 | Sec63 | 11 → 11.1 → 11.1.1 |
| 35 | c | e8ch6c12 | c:1723-1824 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 36 | C | e8ch6C1 | C:490-1304 | PPP2R1A-like_HEAT | 109 → 109.4 → 109.4.1 |
| 37 | D | e8ch6D1 | D:3-91 | PHF5 | 377 → 377.1 → 377.1.4 |
| 38 | F | e8ch6F1 | F:12-89 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 39 | h | e8ch6h1 | h:6-75 | LSM | 4 → 4.1 → 4.1.1 |
| 40 | H | e8ch6H1 | H:160-285 | 574.1.1.0 | 574 → 574.1 → 574.1.1 |
| 41 | i | e8ch6i1 | i:15-88 | LSM | 4 → 4.1 → 4.1.1 |
| 42 | I | e8ch6I1 | I:114-223 | SF3A2 | 319 → 319.2 → 319.2.1 |
| 43 | I | e8ch6I2 | I:1-86 | zf-met | 386 → 386.1 → 386.1.1 |
| 44 | j | e8ch6j1 | j:5-72 | LSM | 4 → 4.1 → 4.1.1 |
| 45 | J | e8ch6J1 | J:2-353 | 130.1.1.0 | 130 → 130.1 → 130.1.1 |
| 46 | k | e8ch6k1 | k:2-80 | LSM | 4 → 4.1 → 4.1.1 |
| 47 | K | e8ch6K1 | K:68-134,K:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 48 | l | e8ch6l1 | l:27-111 | LSM | 4 → 4.1 → 4.1.1 |
| 49 | m | e8ch6m1 | m:4-72 | LSM | 4 → 4.1 → 4.1.1 |
| 50 | M | e8ch6M1 | M:68-134,M:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 51 | n | e8ch6n1 | n:6-84 | LSM | 4 → 4.1 → 4.1.1 |
| 52 | N | e8ch6N01 | N:386-574 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 53 | N | e8ch6N02 | N:575-750 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 54 | N | e8ch6N03 | N:751-931 | HA2_N,HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 55 | N | e8ch6N04 | N:932-1025 | OB_NTP_bind | 2 → 2.1 → 2.1.1 |
| 56 | o | e8ch6o1 | o:58-356 | WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 57 | O | e8ch6O1 | O:185-504 | WD40 | 5 → 5.1 → 5.1.4 |
| 58 | p | e8ch6p1 | p:8-166 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 59 | P | e8ch6P1 | P:8-64 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 60 | P | e8ch6P2 | P:62-110 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 61 | r | e8ch6r1 | r:2-163 | LRR_9 | 207 → 207.1 → 207.1.1 |
| 62 | R | e8ch6R1 | R:68-134,R:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 63 | s | e8ch6s1 | s:85-96,s:145-224 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 64 | s | e8ch6s2 | s:7-84 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 65 | t | e8ch6t1 | t:39-94 | Isy1 | 192 → 192.13 → 192.13.1 |
| 66 | T | e8ch6T1 | T:2-143 | BUD31 | 3952 → 3952.1 → 3952.1.1 |
| 67 | u | e8ch6u01 | u:43-105 | 376.1.1.0 | 376 → 376.1 → 376.1.1 |
| 68 | u | e8ch6u02 | u:106-159 | 304.9.1.0 | 304 → 304.9 → 304.9.1 |
| 69 | u | e8ch6u03 | u:280-457 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 70 | U | e8ch6U1 | U:90-220 | zf-CCCH_RBM22 | 906 → 906.1 → 906.1.1 |
| 71 | U | e8ch6U2 | U:221-303 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 72 | U | e8ch6U3 | U:9-89 | STL11_N | 376 → 376.1 → 376.1.3 |
| 73 | v | e8ch6v1 | v:68-134,v:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 74 | V | e8ch6V01 | V:1-166 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 75 | V | e8ch6V02 | V:242-314 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 76 | w | e8ch6w1 | w:138-299 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 77 | w | e8ch6w2 | w:5-77 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 78 | W | e8ch6W1 | W:450-650 | MA3 | 109 → 109.4 → 109.4.1 |
| 79 | W | e8ch6W2 | W:149-406 | MIF4G | 109 → 109.4 → 109.4.1 |
| 80 | x | e8ch6x1 | x:209-578 | WD40 | 5 → 5.1 → 5.1.4 |
| 81 | X | e8ch6X1 | X:216-461 | HAT_Syf1_CNRKL1_C | 109 → 109.4 → 109.4.1 |
| 82 | y | e8ch6y1 | y:416-492,y:660-706,y:795-1134 | ResIII, AAA_11 | 2004 → 2004.1 → 2004.1.1 |
| 83 | y | e8ch6y2 | y:707-752,y:773-794 | Aquarius_N_3rd | 3940 → 3940.1 → 3940.1.1 |
| 84 | y | e8ch6y3 | y:1135-1373 | AAA_12 | 2004 → 2004.1 → 2004.1.1 |
| 85 | y | e8ch6y4 | y:493-659 | Aquarius_N_2nd | 1 → 1.1 → 1.1.7 |
| 86 | y | e8ch6y5 | y:21-415 | Aquarius_N_1st | 109 → 109.4 → 109.4.1 |
| 87 | z | e8ch6z1 | z:22-738 | TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 88 | Z | e8ch6Z1 | Z:189-229 | zf-CCCH | 906 → 906.1 → 906.1.1 |
| 89 | Z | e8ch6Z2 | Z:230-235,Z:262-309 | zf-C3HC4_3 | 376 → 376.1 → 376.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors