PDB 8GXS
ELECTRON MICROSCOPY0 chains106 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain BAview chain
3 domainsChain DAview chain
3 domainsChain Dcview chain
1 domainChain Deview chain
2 domainsChain DEview chain
2 domainsChain Dfview chain
1 domainChain DFview chain
1 domainChain DGview chain
1 domainChain Djview chain
1 domainChain DJview chain
1 domainChain Dkview chain
1 domainChain Dlview chain
1 domainChain DLview chain
1 domainChain Dmview chain
1 domainChain DOview chain
2 domainsChain DPview chain
2 domainsChain DQview chain
2 domainsChain eview chain
1 domainChain EAview chain
2 domainsChain fview chain
1 domainChain FAview chain
1 domainChain FBview chain
2 domainsChain gview chain
1 domainChain hview chain
1 domainChain HAview chain
3 domainsChain HCview chain
1 domainChain HDview chain
2 domainsChain HEview chain
2 domainsChain HFview chain
1 domainChain HHview chain
2 domainsChain HIview chain
1 domainChain HJview chain
2 domainsChain mview chain
1 domainChain NAview chain
1 domainChain NBview chain
1 domainChain NCview chain
1 domainChain NDview chain
1 domainChain NEview chain
1 domainChain NFview chain
1 domainChain NGview chain
1 domainChain NHview chain
1 domainChain pview chain
1 domainChain PAview chain
7 domainsChain PBview chain
7 domainsChain PCview chain
2 domainsChain PDview chain
1 domainChain PEview chain
2 domainsChain PFview chain
1 domainChain PGview chain
2 domainsChain PHview chain
1 domainChain PIview chain
2 domainsChain PJview chain
1 domainChain PKview chain
1 domainChain PLview chain
1 domainChain rview chain
1 domainChain tview chain
1 domainChain uview chain
1 domainChain vview chain
1 domainChain wview chain
5 domainsChain yview chain
1 domainAll Domains (106)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | BA | e8gxsBA1 | BA:14-54 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 2 | BA | e8gxsBA2 | BA:106-207 | TFIIB | 101 → 101.1 → 101.1.10 |
| 3 | BA | e8gxsBA3 | BA:208-316 | TFIIB | 101 → 101.1 → 101.1.10 |
| 4 | DA | e8gxsDA1 | DA:795-880 | DUF3591 | 101 → 101.1 → 101.1.2 |
| 5 | DA | e8gxsDA2 | DA:588-794,DA:881-971,DA:1054-1083 | DUF3591 | 59 → 59.1 → 59.1.4 |
| 6 | DA | e8gxsDA3 | DA:36-86 | TBP-binding | 575 → 575.1 → 575.1.1 |
| 7 | DB | e8gxsDB1 | DB:649-988 | TPR_TAF2_C | 109 → 109.4 → 109.4.1 |
| 8 | DB | e8gxsDB2 | DB:19-254 | 4081.1.1.0 | 4081 → 4081.1 → 4081.1.1 |
| 9 | DB | e8gxsDB3 | DB:255-648 | TAF2_3rd | 2498 → 2498.1 → 2498.1.1 |
| 10 | Dc | e8gxsDc1 | Dc:1-72 | Bromo_TP | 148 → 148.1 → 148.1.1 |
| 11 | De | e8gxsDe1 | De:202-343,De:363-380 | TFIID_NTD2 | 4320 → 4320.1 → 4320.1.1 |
| 12 | De | e8gxsDe2 | De:417-799 | WD40 | 5 → 5.1 → 5.1.5 |
| 13 | DE | e8gxsDE1 | DE:417-798 | WD40 | 5 → 5.1 → 5.1.5 |
| 14 | DE | e8gxsDE2 | DE:209-378 | TFIID_NTD2 | 4320 → 4320.1 → 4320.1.1 |
| 15 | Df | e8gxsDf1 | Df:217-436 | TAF6_C | 109 → 109.4 → 109.4.1 |
| 16 | DF | e8gxsDF1 | DF:217-436 | TAF6_C | 109 → 109.4 → 109.4.1 |
| 17 | DG | e8gxsDG1 | DG:11-106,DG:128-154 | TAFII55_N | 59 → 59.1 → 59.1.4 |
| 18 | Dj | e8gxsDj1 | Dj:114-218 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 19 | DJ | e8gxsDJ1 | DJ:114-217 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 20 | Dk | e8gxsDk1 | Dk:114-211 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 21 | Dl | e8gxsDl1 | Dl:55-128 | TFIID_20kDa | 148 → 148.1 → 148.1.1 |
| 22 | DL | e8gxsDL1 | DL:57-130 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 23 | Dm | e8gxsDm1 | Dm:31-75 | TFIID-18kDa | 148 → 148.1 → 148.1.1 |
| 24 | DO | e8gxsDO1 | DO:1-53 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 25 | DO | e8gxsDO2 | DO:54-99 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 26 | DP | e8gxsDP1 | DP:256-337 | TBP | 331 → 331.1 → 331.1.1 |
| 27 | DP | e8gxsDP2 | DP:159-255 | TBP | 331 → 331.1 → 331.1.1 |
| 28 | DQ | e8gxsDQ1 | DQ:9-51,DQ:308-321 | TFIIA | 104 → 104.1 → 104.1.1 |
| 29 | DQ | e8gxsDQ2 | DQ:322-376 | TFIIA | 74 → 74.1 → 74.1.1 |
| 30 | e | e8gxse1 | e:42-149 | Med28 | 4207 → 4207.1 → 4207.1.1 |
| 31 | EA | e8gxsEA1 | EA:104-196 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 32 | EA | e8gxsEA2 | EA:10-103 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 33 | EB | e8gxsEB1 | EB:147-209 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 34 | EB | e8gxsEB2 | EB:210-242 | 101.1.2.0 | 101 → 101.1 → 101.1.2 |
| 35 | EB | e8gxsEB3 | EB:72-146 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 36 | f | e8gxsf1 | f:7-149 | Med6 | 3195 → 3195.1 → 3195.1.1 |
| 37 | FA | e8gxsFA1 | FA:5-54,FA:93-180 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 38 | FB | e8gxsFB1 | FB:2-119 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 39 | FB | e8gxsFB2 | FB:175-238 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 40 | g | e8gxsg1 | g:91-175 | Med7 | 4207 → 4207.1 → 4207.1.2 |
| 41 | h | e8gxsh1 | h:4-78,h:102-160 | Med8 | 3560 → 3560.1 → 3560.1.1 |
| 42 | HA | e8gxsHA1 | HA:1-243 | DEAD_2 | 2004 → 2004.1 → 2004.1.1 |
| 43 | HA | e8gxsHA2 | HA:447-728 | Helicase_C_2 | 2004 → 2004.1 → 2004.1.1 |
| 44 | HA | e8gxsHA3 | HA:244-446 | HBB | 3636 → 3636.1 → 3636.1.1 |
| 45 | HC | e8gxsHC1 | HC:388-459 | Tfb2_C | 4340 → 4340.1 → 4340.1.1 |
| 46 | HD | e8gxsHD1 | HD:1-69 | zf-C3HC4_5 | 376 → 376.1 → 376.1.1 |
| 47 | HD | e8gxsHD2 | HD:70-149 | MAT1 | 386 → 386.1 → 386.1.1 |
| 48 | HE | e8gxsHE1 | HE:265-292 | Tfb4 | 375 → 375.1 → 375.1.1 |
| 49 | HE | e8gxsHE2 | HE:8-72,HE:95-264 | Tfb4 | 2006 → 2006.1 → 2006.1.6 |
| 50 | HF | e8gxsHF1 | HF:3-68 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 51 | HG | e8gxsHG1 | HG:317-387 | C1_4 | 376 → 376.1 → 376.1.2 |
| 52 | HG | e8gxsHG2 | HG:239-316 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 53 | HG | e8gxsHG3 | HG:7-24,HG:53-238 | Ssl1 | 2006 → 2006.1 → 2006.1.6 |
| 54 | HH | e8gxsHH1 | HH:493-718 | Helicase_C, ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 55 | HH | e8gxsHH2 | HH:244-492 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 56 | HI | e8gxsHI1 | HI:13-311 | Pkinase | 206 → 206.1 → 206.1.1 |
| 57 | HJ | e8gxsHJ1 | HJ:3-161 | Cyclin_N | 101 → 101.1 → 101.1.10 |
| 58 | HJ | e8gxsHJ2 | HJ:162-289 | Cyclin_C_2 | 101 → 101.1 → 101.1.10 |
| 59 | m | e8gxsm1 | m:13-124 | Med31 | 3548 → 3548.1 → 3548.1.1 |
| 60 | NA | e8gxsNA1 | NA:436-535 | Histone | 148 → 148.1 → 148.1.1 |
| 61 | NB | e8gxsNB1 | NB:23-102 | CENP-T_C | 148 → 148.1 → 148.1.1 |
| 62 | NC | e8gxsNC1 | NC:816-918 | Histone,Histone_H2A_C | 148 → 148.1 → 148.1.1 |
| 63 | ND | e8gxsND1 | ND:1228-1322 | Histone | 148 → 148.1 → 148.1.1 |
| 64 | NE | e8gxsNE1 | NE:633-735 | Histone | 148 → 148.1 → 148.1.1 |
| 65 | NF | e8gxsNF1 | NF:217-302 | CENP-T_C | 148 → 148.1 → 148.1.1 |
| 66 | NG | e8gxsNG1 | NG:1016-1122 | Histone,Histone_H2A_C | 148 → 148.1 → 148.1.1 |
| 67 | NH | e8gxsNH1 | NH:1428-1522 | Histone | 148 → 148.1 → 148.1.1 |
| 68 | p | e8gxsp1 | p:13-314,p:335-408,p:429-458 | 5.1.5.3 | 5 → 5.1 → 5.1.5 |
| 69 | PA | e8gxsPA1 | PA:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 70 | PA | e8gxsPA2 | PA:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 71 | PA | e8gxsPA3 | PA:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 72 | PA | e8gxsPA4 | PA:1152-1308 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 73 | PA | e8gxsPA5 | PA:364-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 74 | PA | e8gxsPA6 | PA:1083-1135,PA:1361-1415,PA:1469-1484 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 75 | PA | e8gxsPA7 | PA:1136-1151,PA:1309-1360 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 76 | PB | e8gxsPB1 | PB:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 77 | PB | e8gxsPB2 | PB:769-805,PB:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 78 | PB | e8gxsPB3 | PB:619-768 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 79 | PB | e8gxsPB4 | PB:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 80 | PB | e8gxsPB5 | PB:15-67,PB:87-200,PB:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 81 | PB | e8gxsPB6 | PB:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 82 | PB | e8gxsPB7 | PB:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 83 | PC | e8gxsPC1 | PC:2-42,PC:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 84 | PC | e8gxsPC2 | PC:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 85 | PD | e8gxsPD1 | PD:14-141 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 86 | PE | e8gxsPE1 | PE:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 87 | PE | e8gxsPE2 | PE:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 88 | PF | e8gxsPF1 | PF:49-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 89 | PG | e8gxsPG1 | PG:78-171 | S1 | 2 → 2.1 → 2.1.1 |
| 90 | PG | e8gxsPG2 | PG:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 91 | PH | e8gxsPH1 | PH:2-149 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 92 | PI | e8gxsPI1 | PI:12-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 93 | PI | e8gxsPI2 | PI:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 94 | PJ | e8gxsPJ1 | PJ:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 95 | PK | e8gxsPK1 | PK:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 96 | PL | e8gxsPL1 | PL:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 97 | r | e8gxsr1 | r:15-206 | Med18 | 868 → 868.1 → 868.1.1 |
| 98 | t | e8gxst1 | t:1-205 | Med20 | 868 → 868.1 → 868.1.1 |
| 99 | u | e8gxsu1 | u:4-132 | Med21 | 4207 → 4207.1 → 4207.1.1 |
| 100 | v | e8gxsv1 | v:8-141 | Med22 | 3559 → 3559.1 → 3559.1.1 |
| 101 | w | e8gxsw1 | w:1-220 | Med23 | 109 → 109.4 → 109.4.1 |
| 102 | w | e8gxsw2 | w:267-468 | Med23 | 109 → 109.4 → 109.4.1 |
| 103 | w | e8gxsw3 | w:469-752 | Med23 | 109 → 109.4 → 109.4.1 |
| 104 | w | e8gxsw4 | w:753-1034 | Med23 | 109 → 109.4 → 109.4.1 |
| 105 | w | e8gxsw5 | w:1035-1334 | Med23 | 109 → 109.4 → 109.4.1 |
| 106 | y | e8gxsy1 | y:14-231 | Med25_VWA | 2006 → 2006.1 → 2006.1.6 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors