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PDB 8GXS

ELECTRON MICROSCOPY0 chains106 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (106)

#ChainDomain IDRangeFamilyClassification
1BAe8gxsBA1BA:14-54TF_Zn_Ribbon375 → 375.1 → 375.1.1
2BAe8gxsBA2BA:106-207TFIIB101 → 101.1 → 101.1.10
3BAe8gxsBA3BA:208-316TFIIB101 → 101.1 → 101.1.10
4DAe8gxsDA1DA:795-880DUF3591101 → 101.1 → 101.1.2
5DAe8gxsDA2DA:588-794,DA:881-971,DA:1054-1083DUF359159 → 59.1 → 59.1.4
6DAe8gxsDA3DA:36-86TBP-binding575 → 575.1 → 575.1.1
7DBe8gxsDB1DB:649-988TPR_TAF2_C109 → 109.4 → 109.4.1
8DBe8gxsDB2DB:19-2544081.1.1.04081 → 4081.1 → 4081.1.1
9DBe8gxsDB3DB:255-648TAF2_3rd2498 → 2498.1 → 2498.1.1
10Dce8gxsDc1Dc:1-72Bromo_TP148 → 148.1 → 148.1.1
11Dee8gxsDe1De:202-343,De:363-380TFIID_NTD24320 → 4320.1 → 4320.1.1
12Dee8gxsDe2De:417-799WD405 → 5.1 → 5.1.5
13DEe8gxsDE1DE:417-798WD405 → 5.1 → 5.1.5
14DEe8gxsDE2DE:209-378TFIID_NTD24320 → 4320.1 → 4320.1.1
15Dfe8gxsDf1Df:217-436TAF6_C109 → 109.4 → 109.4.1
16DFe8gxsDF1DF:217-436TAF6_C109 → 109.4 → 109.4.1
17DGe8gxsDG1DG:11-106,DG:128-154TAFII55_N59 → 59.1 → 59.1.4
18Dje8gxsDj1Dj:114-218148.1.1.0148 → 148.1 → 148.1.1
19DJe8gxsDJ1DJ:114-217148.1.1.0148 → 148.1 → 148.1.1
20Dke8gxsDk1Dk:114-211148.1.1.0148 → 148.1 → 148.1.1
21Dle8gxsDl1Dl:55-128TFIID_20kDa148 → 148.1 → 148.1.1
22DLe8gxsDL1DL:57-130148.1.1.0148 → 148.1 → 148.1.1
23Dme8gxsDm1Dm:31-75TFIID-18kDa148 → 148.1 → 148.1.1
24DOe8gxsDO1DO:1-53TFIIA_gamma_N104 → 104.1 → 104.1.1
25DOe8gxsDO2DO:54-99TFIIA_gamma_C74 → 74.1 → 74.1.1
26DPe8gxsDP1DP:256-337TBP331 → 331.1 → 331.1.1
27DPe8gxsDP2DP:159-255TBP331 → 331.1 → 331.1.1
28DQe8gxsDQ1DQ:9-51,DQ:308-321TFIIA104 → 104.1 → 104.1.1
29DQe8gxsDQ2DQ:322-376TFIIA74 → 74.1 → 74.1.1
30ee8gxse1e:42-149Med284207 → 4207.1 → 4207.1.1
31EAe8gxsEA1EA:104-196TF_Zn_Ribbon375 → 375.1 → 375.1.1
32EAe8gxsEA2EA:10-103TFIIE_alpha101 → 101.1 → 101.1.2
33EBe8gxsEB1EB:147-209TFA2_Winged_2101 → 101.1 → 101.1.2
34EBe8gxsEB2EB:210-242101.1.2.0101 → 101.1 → 101.1.2
35EBe8gxsEB3EB:72-146TFIIE_beta101 → 101.1 → 101.1.2
36fe8gxsf1f:7-149Med63195 → 3195.1 → 3195.1.1
37FAe8gxsFA1FA:5-54,FA:93-180TFIIF_alpha59 → 59.1 → 59.1.1
38FBe8gxsFB1FB:2-119TFIIF_beta_N59 → 59.1 → 59.1.1
39FBe8gxsFB2FB:175-238TFIIF_beta101 → 101.1 → 101.1.2
40ge8gxsg1g:91-175Med74207 → 4207.1 → 4207.1.2
41he8gxsh1h:4-78,h:102-160Med83560 → 3560.1 → 3560.1.1
42HAe8gxsHA1HA:1-243DEAD_22004 → 2004.1 → 2004.1.1
43HAe8gxsHA2HA:447-728Helicase_C_22004 → 2004.1 → 2004.1.1
44HAe8gxsHA3HA:244-446HBB3636 → 3636.1 → 3636.1.1
45HCe8gxsHC1HC:388-459Tfb2_C4340 → 4340.1 → 4340.1.1
46HDe8gxsHD1HD:1-69zf-C3HC4_5376 → 376.1 → 376.1.1
47HDe8gxsHD2HD:70-149MAT1386 → 386.1 → 386.1.1
48HEe8gxsHE1HE:265-292Tfb4375 → 375.1 → 375.1.1
49HEe8gxsHE2HE:8-72,HE:95-264Tfb42006 → 2006.1 → 2006.1.6
50HFe8gxsHF1HF:3-68Tfb54340 → 4340.1 → 4340.1.1
51HGe8gxsHG1HG:317-387C1_4376 → 376.1 → 376.1.2
52HGe8gxsHG2HG:239-316375.1.1.0375 → 375.1 → 375.1.1
53HGe8gxsHG3HG:7-24,HG:53-238Ssl12006 → 2006.1 → 2006.1.6
54HHe8gxsHH1HH:493-718Helicase_C, ERCC3_RAD25_C2004 → 2004.1 → 2004.1.1
55HHe8gxsHH2HH:244-492ResIII2004 → 2004.1 → 2004.1.1
56HIe8gxsHI1HI:13-311Pkinase206 → 206.1 → 206.1.1
57HJe8gxsHJ1HJ:3-161Cyclin_N101 → 101.1 → 101.1.10
58HJe8gxsHJ2HJ:162-289Cyclin_C_2101 → 101.1 → 101.1.10
59me8gxsm1m:13-124Med313548 → 3548.1 → 3548.1.1
60NAe8gxsNA1NA:436-535Histone148 → 148.1 → 148.1.1
61NBe8gxsNB1NB:23-102CENP-T_C148 → 148.1 → 148.1.1
62NCe8gxsNC1NC:816-918Histone,Histone_H2A_C148 → 148.1 → 148.1.1
63NDe8gxsND1ND:1228-1322Histone148 → 148.1 → 148.1.1
64NEe8gxsNE1NE:633-735Histone148 → 148.1 → 148.1.1
65NFe8gxsNF1NF:217-302CENP-T_C148 → 148.1 → 148.1.1
66NGe8gxsNG1NG:1016-1122Histone,Histone_H2A_C148 → 148.1 → 148.1.1
67NHe8gxsNH1NH:1428-1522Histone148 → 148.1 → 148.1.1
68pe8gxsp1p:13-314,p:335-408,p:429-4585.1.5.35 → 5.1 → 5.1.5
69PAe8gxsPA1PA:686-894RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
70PAe8gxsPA2PA:895-1082RNA_pol_Rpb1_64957 → 4957.1 → 4957.1.1
71PAe8gxsPA3PA:534-685RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
72PAe8gxsPA4PA:1152-1308RNA_pol_Rpb1_74955 → 4955.1 → 4955.1.1
73PAe8gxsPA5PA:364-533RNA_pol_Rpb1_21 → 1.1 → 1.1.2
74PAe8gxsPA6PA:1083-1135,PA:1361-1415,PA:1469-1484RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
75PAe8gxsPA7PA:1136-1151,PA:1309-13604956.1.1.04956 → 4956.1 → 4956.1.1
76PBe8gxsPB1PB:201-391RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
77PBe8gxsPB2PB:769-805,PB:930-1053RNA_pol_Rpb2_61 → 1.1 → 1.1.2
78PBe8gxsPB3PB:619-768RNA_pol_Rpb2_6,RNA_pol_Rpb2_54042 → 4042.1 → 4042.1.1
79PBe8gxsPB4PB:806-929RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
80PBe8gxsPB5PB:15-67,PB:87-200,PB:392-528RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
81PBe8gxsPB6PB:529-618RNA_pol_Rpb2_44961 → 4961.1 → 4961.1.1
82PBe8gxsPB7PB:1054-1174RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
83PCe8gxsPC1PC:2-42,PC:179-271RNA_pol_L305 → 305.1 → 305.1.1
84PCe8gxsPC2PC:43-178RNA_pol_A_bac240 → 240.2 → 240.2.1
85PDe8gxsPD1PD:14-141RNA_pol_Rpb4102 → 102.1 → 102.1.1
86PEe8gxsPE1PE:139-210RNA_pol_Rpb5_C840 → 840.1 → 840.1.1
87PEe8gxsPE2PE:2-138RNA_pol_Rpb5_N2008 → 2008.3 → 2008.3.1
88PFe8gxsPF1PF:49-127RNA_pol_Rpb6152 → 152.1 → 152.1.1
89PGe8gxsPG1PG:78-171S12 → 2.1 → 2.1.1
90PGe8gxsPG2PG:1-77SHS2_Rpb7-N872 → 872.1 → 872.1.1
91PHe8gxsPH1PH:2-149RNA_pol_Rpb82 → 2.1 → 2.1.1
92PIe8gxsPI1PI:12-59RNA_POL_M_15KD375 → 375.1 → 375.1.1
93PIe8gxsPI2PI:60-125TFIIS_C375 → 375.1 → 375.1.1
94PJe8gxsPJ1PJ:1-64RNA_pol_N101 → 101.4 → 101.4.1
95PKe8gxsPK1PK:1-115RNA_pol_L_2305 → 305.1 → 305.1.1
96PLe8gxsPL1PL:15-58DNA_RNApol_7kD375 → 375.1 → 375.1.1
97re8gxsr1r:15-206Med18868 → 868.1 → 868.1.1
98te8gxst1t:1-205Med20868 → 868.1 → 868.1.1
99ue8gxsu1u:4-132Med214207 → 4207.1 → 4207.1.1
100ve8gxsv1v:8-141Med223559 → 3559.1 → 3559.1.1
101we8gxsw1w:1-220Med23109 → 109.4 → 109.4.1
102we8gxsw2w:267-468Med23109 → 109.4 → 109.4.1
103we8gxsw3w:469-752Med23109 → 109.4 → 109.4.1
104we8gxsw4w:753-1034Med23109 → 109.4 → 109.4.1
105we8gxsw5w:1035-1334Med23109 → 109.4 → 109.4.1
106ye8gxsy1y:14-231Med25_VWA2006 → 2006.1 → 2006.1.6

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors