PDB 8KDB
ELECTRON MICROSCOPY0 chains12 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
6 domainse8kdbA01(A:230-411,A:484-488,A:530,A:640-651,A:711-712,A:780-787,A:795-797,A:890-891,A:903-905,A:973-974,A:1086-1091,A:1105-1106,A:1146-1150,A:1167-1172,A:1184,A:1188,A:1200-1205,A:1224-1231,A:1268-1271,A:1282)e8kdbA02(A:412-483,A:489-529,A:531-596,A:630-639,A:652-710,A:713-779,A:788-794,A:798-858)e8kdbA03(A:859-889,A:892-902,A:906-972,A:975-986)e8kdbA04(A:987-1085,A:1092-1104,A:1107-1145,A:1151-1166,A:1173-1183,A:1185-1187,A:1189-1199,A:1206-1223,A:1232-1267,A:1272-1281,A:1283-1321)e8kdbA05(A:1497-1627)e8kdbA06(A:1772-1982)
Chain Gview chain
6 domainse8kdbG1(G:255-436,G:509-513,G:555-555,G:665-676,G:736-737,G:805-812,G:820-822,G:915-916,G:928-930,G:998-999,G:1111-1116,G:1130-1131,G:1171-1175,G:1192-1197,G:1209-1209,G:1213-1213,G:1225-1230,G:1249-1256,G:1293-1296,G:1307-1307)e8kdbG2(G:437-508,G:514-554,G:556-621,G:655-664,G:677-735,G:738-804,G:813-819,G:823-883)e8kdbG3(G:884-914,G:917-927,G:931-997,G:1000-1011)e8kdbG4(G:1012-1110,G:1117-1129,G:1132-1170,G:1176-1191,G:1198-1208,G:1210-1212,G:1214-1224,G:1231-1248,G:1257-1292,G:1297-1306,G:1308-1346)e8kdbG5(G:1522-1652)e8kdbG6(G:1797-2007)
All Domains (12)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8kdbA01 | A:230-411,A:484-488,A:530,A:640-651,A:711-712,A:780-787,A:795-797,A:890-891,A:903-905,A:973-974,A:1086-1091,A:1105-1106,A:1146-1150,A:1167-1172,A:1184,A:1188,A:1200-1205,A:1224-1231,A:1268-1271,A:1282 | Mononeg_RNA_pol | 4963 → 4963.1 → 4963.1.2 |
| 2 | A | e8kdbA02 | A:412-483,A:489-529,A:531-596,A:630-639,A:652-710,A:713-779,A:788-794,A:798-858 | Mononeg_RNA_pol | 304 → 304.48 → 304.48.1 |
| 3 | A | e8kdbA03 | A:859-889,A:892-902,A:906-972,A:975-986 | Mononeg_RNA_pol | 304 → 304.48 → 304.48.1 |
| 4 | A | e8kdbA04 | A:987-1085,A:1092-1104,A:1107-1145,A:1151-1166,A:1173-1183,A:1185-1187,A:1189-1199,A:1206-1223,A:1232-1267,A:1272-1281,A:1283-1321 | 4962.1.1.1 | 4962 → 4962.1 → 4962.1.1 |
| 5 | A | e8kdbA05 | A:1497-1627 | 3995.1.1.0 | 3995 → 3995.1 → 3995.1.1 |
| 6 | A | e8kdbA06 | A:1772-1982 | 2003.1.5.0 | 2003 → 2003.1 → 2003.1.5 |
| 7 | G | e8kdbG1 | G:255-436,G:509-513,G:555-555,G:665-676,G:736-737,G:805-812,G:820-822,G:915-916,G:928-930,G:998-999,G:1111-1116,G:1130-1131,G:1171-1175,G:1192-1197,G:1209-1209,G:1213-1213,G:1225-1230,G:1249-1256,G:1293-1296,G:1307-1307 | Mononeg_RNA_pol | 4963 → 4963.1 → 4963.1.2 |
| 8 | G | e8kdbG2 | G:437-508,G:514-554,G:556-621,G:655-664,G:677-735,G:738-804,G:813-819,G:823-883 | Mononeg_RNA_pol | 304 → 304.48 → 304.48.1 |
| 9 | G | e8kdbG3 | G:884-914,G:917-927,G:931-997,G:1000-1011 | Mononeg_RNA_pol | 304 → 304.48 → 304.48.1 |
| 10 | G | e8kdbG4 | G:1012-1110,G:1117-1129,G:1132-1170,G:1176-1191,G:1198-1208,G:1210-1212,G:1214-1224,G:1231-1248,G:1257-1292,G:1297-1306,G:1308-1346 | 4962.1.1.1 | 4962 → 4962.1 → 4962.1.1 |
| 11 | G | e8kdbG5 | G:1522-1652 | 3995.1.1.0 | 3995 → 3995.1 → 3995.1.1 |
| 12 | G | e8kdbG6 | G:1797-2007 | 2003.1.5.0 | 2003 → 2003.1 → 2003.1.5 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors