PDB 8OKI
ELECTRON MICROSCOPY0 chains29 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
5 domainsChain Bview chain
7 domainse8okiB1(B:82-190,B:313-315,B:355-377,B:379-492,B:553-557,B:566-566,B:614-616,B:770-772,B:810-815,B:821-821,B:829-835)e8okiB2(B:191-312,B:316-354,B:378-378)e8okiB3(B:493-552,B:558-565,B:567-589,B:599-603)e8okiB4(B:590-598,B:604-613,B:617-720)e8okiB5(B:721-754,B:759-761,B:882-1006)e8okiB6(B:755-758,B:762-769,B:773-809,B:816-820,B:822-828,B:836-881)e8okiB7(B:1007-1075)
Chain Cview chain
4 domainsChain Dview chain
2 domainsChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Nview chain
1 domainChain Pview chain
1 domainAll Domains (29)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8okiA1 | A:1-201,A:247-386,A:550-551,A:590-609 | RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e8okiA2 | A:387-415,A:490-549,A:552-564 | RNA_pol_Rpb1_3 | 1 → 1.1 → 1.1.2 |
| 3 | A | e8okiA3 | A:416-489 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 4 | A | e8okiA4 | A:565-589,A:610-733 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e8okiA5 | A:734-882 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 6 | B | e8okiB1 | B:82-190,B:313-315,B:355-377,B:379-492,B:553-557,B:566-566,B:614-616,B:770-772,B:810-815,B:821-821,B:829-835 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 7 | B | e8okiB2 | B:191-312,B:316-354,B:378-378 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 8 | B | e8okiB3 | B:493-552,B:558-565,B:567-589,B:599-603 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 9 | B | e8okiB4 | B:590-598,B:604-613,B:617-720 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 10 | B | e8okiB5 | B:721-754,B:759-761,B:882-1006 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 11 | B | e8okiB6 | B:755-758,B:762-769,B:773-809,B:816-820,B:822-828,B:836-881 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | B | e8okiB7 | B:1007-1075 | RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 13 | C | e8okiC1 | C:1-71 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 14 | C | e8okiC2 | C:72-121,C:280-389 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 15 | C | e8okiC3 | C:122-153,C:237-279 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 16 | C | e8okiC4 | C:154-236 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 17 | D | e8okiD01 | D:1-39,D:151-260 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 18 | D | e8okiD02 | D:40-150 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 19 | E | e8okiE1 | E:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 20 | E | e8okiE2 | E:79-189 | S1 | 2 → 2.1 → 2.1.1 |
| 21 | F | e8okiF1 | F:1-120 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 22 | G | e8okiG1 | G:85-148 | KOW | 4 → 4.1 → 4.1.1 |
| 23 | G | e8okiG2 | G:2-84 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 24 | H | e8okiH1 | H:1-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 25 | I | e8okiI1 | I:3-60 | Spt4 | 375 → 375.1 → 375.1.1 |
| 26 | K | e8okiK1 | K:1-57 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 27 | L | e8okiL1 | L:1-95 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 28 | N | e8okiN1 | N:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | P | e8okiP1 | P:1-49 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors