PDB 8RBX
ELECTRON MICROSCOPY0 chains58 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
7 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain iview chain
2 domainsChain Iview chain
2 domainsChain Jview chain
1 domainChain kview chain
3 domainsChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
1 domainChain Oview chain
1 domainChain pview chain
2 domainsChain qview chain
1 domainChain Qview chain
1 domainChain Rview chain
1 domainChain Sview chain
1 domainChain Uview chain
1 domainChain Vview chain
1 domainChain Wview chain
1 domainChain Yview chain
7 domainsAll Domains (58)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8rbxA1 | A:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 2 | A | e8rbxA2 | A:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 3 | A | e8rbxA3 | A:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 4 | A | e8rbxA4 | A:1152-1308 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 5 | A | e8rbxA5 | A:364-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 6 | A | e8rbxA6 | A:1083-1135,A:1361-1415,A:1469-1484 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 7 | A | e8rbxA7 | A:1136-1151,A:1309-1360 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 8 | B | e8rbxB1 | B:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 9 | B | e8rbxB2 | B:16-67,B:87-200,B:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 10 | B | e8rbxB3 | B:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | B | e8rbxB4 | B:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 12 | B | e8rbxB5 | B:769-805,B:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | B | e8rbxB6 | B:619-768 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 14 | B | e8rbxB7 | B:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 15 | C | e8rbxC1 | C:2-42,C:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 16 | C | e8rbxC2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 17 | D | e8rbxD1 | D:14-142 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 18 | E | e8rbxE1 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 19 | E | e8rbxE2 | E:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 20 | F | e8rbxF1 | F:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 21 | G | e8rbxG1 | G:79-171 | S1 | 2 → 2.1 → 2.1.1 |
| 22 | G | e8rbxG2 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 23 | H | e8rbxH1 | H:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 24 | i | e8rbxi1 | i:1-266,i:424-556 | Lactamase_B_6 | 247 → 247.1 → 247.1.1 |
| 25 | i | e8rbxi2 | i:267-343,i:372-423 | Beta-Casp | 2004 → 2004.1 → 2004.1.1 |
| 26 | I | e8rbxI1 | I:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 27 | I | e8rbxI2 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 28 | J | e8rbxJ1 | J:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | k | e8rbxk01 | k:-1-111,k:113-146,k:148-215,k:311-312,k:396-446 | RMMBL,Lactamase_B_6 | 247 → 247.1 → 247.1.1 |
| 30 | k | e8rbxk02 | k:112,k:147,k:216-310,k:313-395 | Beta-Casp | 2004 → 2004.1 → 2004.1.1 |
| 31 | k | e8rbxk03 | k:499-597 | IntS11_C | 331 → 331.23 → 331.23.1 |
| 32 | K | e8rbxK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 33 | L | e8rbxL1 | L:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 34 | M | e8rbxM01 | M:1-135 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 35 | O | e8rbxO1 | O:24-102 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 36 | p | e8rbxp01 | p:-1-236 | HEAT | 109 → 109.4 → 109.4.1 |
| 37 | p | e8rbxp02 | p:366-589 | HEAT,HEAT_2 | 109 → 109.4 → 109.4.1 |
| 38 | q | e8rbxq01 | q:-1-153 | Metallophos | 246 → 246.2 → 246.2.1 |
| 39 | Q | e8rbxQ01 | Q:0-129 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 40 | R | e8rbxR01 | R:30-122 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 41 | S | e8rbxS1 | S:1-135 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 42 | U | e8rbxU1 | U:24-102 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 43 | V | e8rbxV1 | V:1-130 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 44 | W | e8rbxW1 | W:34-126 | 148.1.1.0 | 148 → 148.1 → 148.1.1 |
| 45 | Y | e8rbxY1 | Y:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 46 | Y | e8rbxY2 | Y:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 47 | Y | e8rbxY3 | Y:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 48 | Y | e8rbxY4 | Y:1152-1308 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 49 | Y | e8rbxY5 | Y:364-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 50 | Y | e8rbxY6 | Y:1083-1135,Y:1361-1415,Y:1469-1484 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 51 | Y | e8rbxY7 | Y:1136-1151,Y:1309-1360 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 52 | Z | e8rbxZ1 | Z:270-396 | KOW1_SPT5 | 4 → 4.1 → 4.1.1 |
| 53 | Z | e8rbxZ2 | Z:176-269 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 54 | Z | e8rbxZ3 | Z:471-526 | KOW | 4 → 4.1 → 4.1.1 |
| 55 | Z | e8rbxZ4 | Z:416-470 | KOW2_Spt5 | 4 → 4.1 → 4.1.1 |
| 56 | Z | e8rbxZ5 | Z:581-646 | KOW4_SPT5 | 4 → 4.1 → 4.1.1 |
| 57 | Z | e8rbxZ6 | Z:703-754 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
| 58 | Z | e8rbxZ7 | Z:527-580 | KOWx_SPT5 | 4 → 4.1 → 4.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors