PDB 8RDJ
ELECTRON MICROSCOPY0 chains29 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Cview chain
7 domainsChain Gview chain
1 domainChain Iview chain
2 domainsChain Kview chain
1 domainChain Lview chain
2 domainsChain Nview chain
2 domainsChain Qview chain
3 domainsChain Sview chain
1 domainChain Tview chain
1 domainAll Domains (29)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8rdjA1 | A:29-61,A:181-249 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e8rdjA2 | A:62-180 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | A | e8rdjA3 | A:297-327 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 4 | B | e8rdjB1 | B:29-61,B:181-249 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | B | e8rdjB2 | B:62-180 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 6 | B | e8rdjB3 | B:297-327 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 7 | C | e8rdjC1 | C:1-130,C:351-352,C:436-563,C:748-749 | 4010.1.1.0 | 4010 → 4010.1 → 4010.1.1 |
| 8 | C | e8rdjC2 | C:131-202,C:327-350,C:353-435 | RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 9 | C | e8rdjC3 | C:564-691 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 10 | C | e8rdjC4 | C:692-747,C:750-770 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 11 | C | e8rdjC5 | C:771-798 | 1.1.2.0 | 1 → 1.1 → 1.1.2 |
| 12 | C | e8rdjC6 | C:799-954 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | C | e8rdjC7 | C:948-1056 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 14 | D | e8rdjD1 | D:1-377 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 15 | D | e8rdjD2 | D:378-421,D:462-542 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 16 | D | e8rdjD3 | D:422-461 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 17 | G | e8rdjG1 | G:196-544 | PPR, PPR_2, PPR_3, PPR_long, TPR_24 | 109 → 109.4 → 109.4.1 |
| 18 | I | e8rdjI1 | I:62-149 | Sod_Fe_N | 192 → 192.3 → 192.3.1 |
| 19 | I | e8rdjI2 | I:150-252 | Sod_Fe_C | 228 → 228.1 → 228.1.1 |
| 20 | K | e8rdjK1 | K:134-312,K:341-446 | PfkB | 2003 → 2003.6 → 2003.6.1 |
| 21 | L | e8rdjL1 | L:100-350 | SET | 70 → 70.3 → 70.3.1 |
| 22 | L | e8rdjL2 | L:351-482 | Rubis-subs-bind | 630 → 630.1 → 630.1.1 |
| 23 | N | e8rdjN1 | N:60-146 | Sod_Fe_N | 192 → 192.3 → 192.3.1 |
| 24 | N | e8rdjN2 | N:147-266 | Sod_Fe_C | 228 → 228.1 → 228.1.1 |
| 25 | Q | e8rdjQ1 | Q:237-336,Q:392-393,Q:470-473,Q:493-496,Q:502-502 | Mur_ligase | 2003 → 2003.1 → 2003.1.8 |
| 26 | Q | e8rdjQ2 | Q:337-391,Q:394-469,Q:474-492,Q:497-501,Q:503-572 | Mur_ligase_M | 2004 → 2004.1 → 2004.1.1 |
| 27 | Q | e8rdjQ3 | Q:573-745 | Mur_ligase_C | 7570 → 7570.1 → 7570.1.1 |
| 28 | S | e8rdjS1 | S:240-528 | PfkB | 2003 → 2003.6 → 2003.6.1 |
| 29 | T | e8rdjT1 | T:47-129 | Cupin_3 | 10 → 10.12 → 10.12.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors