PDB 8S52
ELECTRON MICROSCOPY0 chains47 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
10 domainse8s52A1(A:1-345,A:569-570,A:618-618,A:668-672)e8s52A2(A:346-389,A:451-536)e8s52A3(A:390-450)e8s52A4(A:537-568,A:571-617,A:619-667,A:673-686)e8s52A5(A:687-895,A:897-898)e8s52A6(A:896-896,A:899-927)e8s52A7(A:1056-1088)e8s52A8(A:1089-1138,A:1172-1181,A:1194-1213,A:1242-1247,A:1261-1272,A:1282-1284,A:1308-1320,A:1328-1332,A:1367-1475)e8s52A9(A:1139-1170,A:1306-1307,A:1321-1327,A:1333-1366)e8s52A10(A:1171-1171,A:1182-1193,A:1214-1241,A:1248-1260,A:1273-1281,A:1285-1305)
Chain Bview chain
7 domainse8s52B1(B:182-334,B:351-355,B:373-380,B:531-666,B:672-673,B:677-685,B:730-736,B:751-757,B:786-793,B:811-816,B:965-968,B:997-1002,B:1007-1013,B:1022-1022,B:1036-1036)e8s52B2(B:335-350,B:356-372,B:381-530)e8s52B3(B:667-671,B:674-676,B:686-729,B:737-750,B:758-778)e8s52B4(B:779-785,B:794-810,B:817-907)e8s52B5(B:908-943,B:1069-1194)e8s52B6(B:944-964,B:969-996,B:1003-1006,B:1014-1021,B:1023-1035,B:1037-1068)e8s52B7(B:1195-1249)
Chain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
3 domainsChain Oview chain
2 domainsChain Qview chain
1 domainChain Rview chain
2 domainsChain Uview chain
2 domainsChain Vview chain
2 domainsChain Wview chain
2 domainsChain Xview chain
2 domainsAll Domains (47)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8s52A1 | A:1-345,A:569-570,A:618-618,A:668-672 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e8s52A2 | A:346-389,A:451-536 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 3 | A | e8s52A3 | A:390-450 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 4 | A | e8s52A4 | A:537-568,A:571-617,A:619-667,A:673-686 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e8s52A5 | A:687-895,A:897-898 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 6 | A | e8s52A6 | A:896-896,A:899-927 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 7 | A | e8s52A7 | A:1056-1088 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 8 | A | e8s52A8 | A:1089-1138,A:1172-1181,A:1194-1213,A:1242-1247,A:1261-1272,A:1282-1284,A:1308-1320,A:1328-1332,A:1367-1475 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 9 | A | e8s52A9 | A:1139-1170,A:1306-1307,A:1321-1327,A:1333-1366 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 10 | A | e8s52A10 | A:1171-1171,A:1182-1193,A:1214-1241,A:1248-1260,A:1273-1281,A:1285-1305 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 11 | B | e8s52B1 | B:182-334,B:351-355,B:373-380,B:531-666,B:672-673,B:677-685,B:730-736,B:751-757,B:786-793,B:811-816,B:965-968,B:997-1002,B:1007-1013,B:1022-1022,B:1036-1036 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 12 | B | e8s52B2 | B:335-350,B:356-372,B:381-530 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 13 | B | e8s52B3 | B:667-671,B:674-676,B:686-729,B:737-750,B:758-778 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 14 | B | e8s52B4 | B:779-785,B:794-810,B:817-907 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 15 | B | e8s52B5 | B:908-943,B:1069-1194 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 16 | B | e8s52B6 | B:944-964,B:969-996,B:1003-1006,B:1014-1021,B:1023-1035,B:1037-1068 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 17 | B | e8s52B7 | B:1195-1249 | RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 18 | C | e8s52C1 | C:2-42,C:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 19 | C | e8s52C2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 20 | D | e8s52D1 | D:60-180 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 21 | E | e8s52E1 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 22 | E | e8s52E2 | E:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 23 | F | e8s52F1 | F:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 24 | G | e8s52G1 | G:79-171 | S1 | 2 → 2.1 → 2.1.1 |
| 25 | G | e8s52G2 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 26 | H | e8s52H1 | H:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 27 | I | e8s52I1 | I:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 28 | I | e8s52I2 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 29 | J | e8s52J1 | J:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 30 | K | e8s52K1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 31 | L | e8s52L1 | L:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 32 | M | e8s52M1 | M:208-316 | TFIIB | 101 → 101.1 → 101.1.10 |
| 33 | M | e8s52M2 | M:105-207 | TFIIB | 101 → 101.1 → 101.1.10 |
| 34 | M | e8s52M3 | M:7-54 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 35 | O | e8s52O1 | O:159-255 | TBP | 331 → 331.1 → 331.1.1 |
| 36 | O | e8s52O2 | O:256-338 | TBP | 331 → 331.1 → 331.1.1 |
| 37 | Q | e8s52Q1 | Q:5-54,Q:93-180 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 38 | R | e8s52R1 | R:2-119 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 39 | R | e8s52R2 | R:175-238 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 40 | U | e8s52U1 | U:322-376 | TFIIA | 74 → 74.1 → 74.1.1 |
| 41 | U | e8s52U2 | U:9-51,U:308-321 | TFIIA | 104 → 104.1 → 104.1.1 |
| 42 | V | e8s52V1 | V:1-53 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 43 | V | e8s52V2 | V:54-99 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 44 | W | e8s52W1 | W:101-174 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 45 | W | e8s52W2 | W:11-100,W:175-204 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 46 | X | e8s52X1 | X:147-206 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 47 | X | e8s52X2 | X:75-146 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors