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PDB 8VL1

0 chains94 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (94)

#ChainDomain IDRangeFamilyClassification
10e8vl1010:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
21e8vl1111:1-110Ribosomal_L22218 → 218.2 → 218.2.1
32e8vl1212:6-99Ribosomal_L23304 → 304.109 → 304.109.1
43e8vl1313:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
54e8vl1414:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
69e8vl1919:1-148Ribosomal_L10304 → 304.60 → 304.60.1
7AAe8vl1AA1AA:1238-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
8AAe8vl1AA2AA:153-226,AA:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
9AAe8vl1AA3AA:828-942,AA:1042-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
10AAe8vl1AA4AA:791-828,AA:1060-1125,AA:1180-1237RNA_pol_Rpb2_61 → 1.1 → 1.1.2
11AAe8vl1AA5AA:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
12AAe8vl1AA6AA:10-152,AA:450-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
13AAe8vl1AA7AA:578-714RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
14ABe8vl1AB1AB:2-100NusG304 → 304.17 → 304.17.1
15ABe8vl1AB2AB:108-1564.1.1.04 → 4.1 → 4.1.1
16ACe8vl1AC1AC:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
17ACe8vl1AC2AC:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
18ACe8vl1AC3AC:2-52,AC:179-236RNA_pol_L305 → 305.1 → 305.1.1
19ADe8vl1AD1AD:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
20ADe8vl1AD2AD:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
21ADe8vl1AD3AD:2-52,AD:179-236RNA_pol_L305 → 305.1 → 305.1.1
22AEe8vl1AE1AE:14-341RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
23AEe8vl1AE2AE:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
24AEe8vl1AE3AE:895-931,AE:1214-1389RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
25AEe8vl1AE4AE:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
26AEe8vl1AE5AE:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
27AEe8vl1AE6AE:1023-1151325.1.7.0325 → 325.1 → 325.1.7
28AEe8vl1AE7AE:811-894275.1.1.0275 → 275.1 → 275.1.1
29AEe8vl1AE8AE:932-1022325.1.7.0325 → 325.1 → 325.1.7
30AEe8vl1AE9AE:1152-1215325.1.7.0325 → 325.1 → 325.1.7
31AFe8vl1AF1AF:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
32AGe8vl1AG1AG:1-127NusA_N885 → 885.1 → 885.1.1
33AGe8vl1AG2AG:199-278KH_5327 → 327.11 → 327.11.1
34AGe8vl1AG3AG:126-199S12 → 2.1 → 2.1.1
35AGe8vl1AG4AG:345-422102.1.1.0102 → 102.1 → 102.1.1
36AGe8vl1AG5AG:423-495HHH_5102 → 102.1 → 102.1.1
37AGe8vl1AG6AG:279-346KH_NusA_2nd327 → 327.11 → 327.11.1
38be8vl1b1b:7-85Ribosomal_L27325 → 325.1 → 325.1.8
39ce8vl1c1c:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
40Ce8vl1C1C:10-74Ribosomal_S18101 → 101.1 → 101.1.1
41ee8vl1e1e:1-60Ribosomal_L29192 → 192.4 → 192.4.1
42Ee8vl1E1E:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
43fe8vl1f1f:2-59Ribosomal_L30887 → 887.1 → 887.1.1
44Fe8vl1F1F:4-68Ribosomal_S213666 → 3666.1 → 3666.1.1
45ge8vl1g1g:1-70Ribosomal_L314987 → 4987.1 → 4987.1.1
46Ge8vl1G1G:9-226Ribosomal_S22007 → 2007.6 → 2007.6.1
47he8vl1h1h:4-125Ribosomal_L22 → 2.1 → 2.1.1
48he8vl1h2h:126-270Ribosomal_L2_C4 → 4.1 → 4.1.1
49He8vl1H1H:87-176,H:264-266S12 → 2.1 → 2.1.1
50He8vl1H2H:267-362S12 → 2.1 → 2.1.1
51He8vl1H3H:3-89S12 → 2.1 → 2.1.1
52He8vl1H4H:363-435S12 → 2.1 → 2.1.1
53ie8vl1i1i:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
54Ie8vl1I1I:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
55Ie8vl1I2I:2-106KH_2327 → 327.11 → 327.11.1
56je8vl1j1j:1-209Ribosomal_L31 → 1.1 → 1.1.7
57Je8vl1J1J:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
58ke8vl1k1k:4-53Ribosomal_L33375 → 375.1 → 375.1.1
59Ke8vl1K1K:79-166Ribosomal_S5_C212 → 212.1 → 212.1.1
60Ke8vl1K2K:10-78Ribosomal_S5330 → 330.1 → 330.1.1
61le8vl1l1l:1-198Ribosomal_L47559 → 7559.1 → 7559.1.1
62Le8vl1L1L:1-100Ribosomal_S6304 → 304.12 → 304.12.1
63me8vl1m1m:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
64Me8vl1M1M:2-152Ribosomal_S7167 → 167.1 → 167.1.1
65ne8vl1n1n:2-179Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
66Ne8vl1N1N:2-66Ribosomal_S8320 → 320.2 → 320.2.1
67Ne8vl1N2N:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
68oe8vl1o1o:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
69Oe8vl1O1O:4-130Ribosomal_S9212 → 212.1 → 212.1.1
70pe8vl1p1p:2-82Ribosomal_L6318 → 318.1 → 318.1.1
71pe8vl1p2p:83-177Ribosomal_L6318 → 318.1 → 318.1.1
72Pe8vl1P1P:5-102Ribosomal_S10304 → 304.44 → 304.44.1
73qe8vl1q1q:1-38Ribosomal_L36919 → 919.1 → 919.1.1
74Qe8vl1Q1Q:13-128Ribosomal_S112484 → 2484.1 → 2484.1.1
75re8vl1r1r:1-52Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
76re8vl1r2r:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
77Re8vl1R1R:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
78se8vl1s1s:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
79Se8vl1S1S:2-101Ribosomal_S14377 → 377.1 → 377.1.1
80te8vl1t1t:2-122Ribosomal_L143174 → 3174.1 → 3174.1.1
81Te8vl1T1T:2-87Ribosomal_S15616 → 616.1 → 616.1.1
82ue8vl1u1u:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
83Ue8vl1U1U:1-82Ribosomal_S16837 → 837.1 → 837.1.1
84ve8vl1v1v:1-136Ribosomal_L16325 → 325.1 → 325.1.5
85Ve8vl1V1V:4-83Ribosomal_S172 → 2.1 → 2.1.1
86we8vl1w1w:14-117Ribosomal_L17218 → 218.3 → 218.3.1
87We8vl1W1W:3-81Ribosomal_S19838 → 838.1 → 838.1.1
88xe8vl1x1x:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
89Xe8vl1X1X:2-115Ribosomal_S13102 → 102.2 → 102.2.1
90ye8vl1y1y:2-115Ribosomal_L194 → 4.1 → 4.1.1
91Ye8vl1Y1Y:2-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
92Ye8vl1Y2Y:73-142Ribosomal_L11101 → 101.1 → 101.1.16
93ze8vl1z1z:2-118Ribosomal_L20143 → 143.2 → 143.2.1
94Ze8vl1Z1Z:2-31Ribosomal_L12_N156 → 156.1 → 156.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors