Home/PDB

PDB 8VOO

0 chains94 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

All Domains (94)

#ChainDomain IDRangeFamilyClassification
10e8voo010:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
21e8voo111:1-110Ribosomal_L22218 → 218.2 → 218.2.1
32e8voo212:6-99Ribosomal_L23304 → 304.109 → 304.109.1
43e8voo313:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
54e8voo414:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
69e8voo919:1-148Ribosomal_L10304 → 304.60 → 304.60.1
7AAe8vooAA1AA:1238-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
8AAe8vooAA2AA:153-226,AA:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
9AAe8vooAA3AA:828-942,AA:1042-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
10AAe8vooAA4AA:791-828,AA:1060-1125,AA:1180-1237RNA_pol_Rpb2_61 → 1.1 → 1.1.2
11AAe8vooAA5AA:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
12AAe8vooAA6AA:10-152,AA:450-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
13AAe8vooAA7AA:578-714RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
14ABe8vooAB1AB:2-100NusG304 → 304.17 → 304.17.1
15ABe8vooAB2AB:108-1564.1.1.04 → 4.1 → 4.1.1
16ACe8vooAC1AC:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
17ACe8vooAC2AC:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
18ACe8vooAC3AC:2-52,AC:179-236RNA_pol_L305 → 305.1 → 305.1.1
19ADe8vooAD1AD:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
20ADe8vooAD2AD:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
21ADe8vooAD3AD:2-52,AD:179-236RNA_pol_L305 → 305.1 → 305.1.1
22AEe8vooAE1AE:14-341RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
23AEe8vooAE2AE:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
24AEe8vooAE3AE:895-931,AE:1214-1389RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
25AEe8vooAE4AE:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
26AEe8vooAE5AE:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
27AEe8vooAE6AE:1023-1151325.1.7.0325 → 325.1 → 325.1.7
28AEe8vooAE7AE:811-894275.1.1.0275 → 275.1 → 275.1.1
29AEe8vooAE8AE:932-1022325.1.7.0325 → 325.1 → 325.1.7
30AEe8vooAE9AE:1152-1215325.1.7.0325 → 325.1 → 325.1.7
31AFe8vooAF1AF:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
32AGe8vooAG1AG:1-127NusA_N885 → 885.1 → 885.1.1
33AGe8vooAG2AG:199-278KH_5327 → 327.11 → 327.11.1
34AGe8vooAG3AG:126-199S12 → 2.1 → 2.1.1
35AGe8vooAG4AG:345-422102.1.1.0102 → 102.1 → 102.1.1
36AGe8vooAG5AG:423-495HHH_5102 → 102.1 → 102.1.1
37AGe8vooAG6AG:279-346KH_NusA_2nd327 → 327.11 → 327.11.1
38be8voob1b:7-85Ribosomal_L27325 → 325.1 → 325.1.8
39ce8vooc1c:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
40Ce8vooC1C:10-74Ribosomal_S18101 → 101.1 → 101.1.1
41ee8vooe1e:1-60Ribosomal_L29192 → 192.4 → 192.4.1
42Ee8vooE1E:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
43fe8voof1f:2-59Ribosomal_L30887 → 887.1 → 887.1.1
44Fe8vooF1F:4-68Ribosomal_S213666 → 3666.1 → 3666.1.1
45ge8voog1g:1-70Ribosomal_L314987 → 4987.1 → 4987.1.1
46Ge8vooG1G:9-226Ribosomal_S22007 → 2007.6 → 2007.6.1
47he8vooh1h:4-125Ribosomal_L22 → 2.1 → 2.1.1
48he8vooh2h:126-270Ribosomal_L2_C4 → 4.1 → 4.1.1
49He8vooH1H:87-176,H:264-266S12 → 2.1 → 2.1.1
50He8vooH2H:267-362S12 → 2.1 → 2.1.1
51He8vooH3H:3-89S12 → 2.1 → 2.1.1
52He8vooH4H:363-435S12 → 2.1 → 2.1.1
53ie8vooi1i:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
54Ie8vooI1I:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
55Ie8vooI2I:2-106KH_2327 → 327.11 → 327.11.1
56je8vooj1j:1-209Ribosomal_L31 → 1.1 → 1.1.7
57Je8vooJ1J:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
58ke8vook1k:4-53Ribosomal_L33375 → 375.1 → 375.1.1
59Ke8vooK1K:79-166Ribosomal_S5_C212 → 212.1 → 212.1.1
60Ke8vooK2K:10-78Ribosomal_S5330 → 330.1 → 330.1.1
61le8vool1l:1-198Ribosomal_L47559 → 7559.1 → 7559.1.1
62Le8vooL1L:1-100Ribosomal_S6304 → 304.12 → 304.12.1
63me8voom1m:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
64Me8vooM1M:2-152Ribosomal_S7167 → 167.1 → 167.1.1
65ne8voon1n:2-179Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
66Ne8vooN1N:2-66Ribosomal_S8320 → 320.2 → 320.2.1
67Ne8vooN2N:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
68oe8vooo1o:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
69Oe8vooO1O:4-130Ribosomal_S9212 → 212.1 → 212.1.1
70pe8voop1p:2-82Ribosomal_L6318 → 318.1 → 318.1.1
71pe8voop2p:83-177Ribosomal_L6318 → 318.1 → 318.1.1
72Pe8vooP1P:5-102Ribosomal_S10304 → 304.44 → 304.44.1
73qe8vooq1q:1-38Ribosomal_L36919 → 919.1 → 919.1.1
74Qe8vooQ1Q:13-128Ribosomal_S112484 → 2484.1 → 2484.1.1
75re8voor1r:1-52Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
76re8voor2r:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
77Re8vooR1R:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
78se8voos1s:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
79Se8vooS1S:2-101Ribosomal_S14377 → 377.1 → 377.1.1
80te8voot1t:2-122Ribosomal_L143174 → 3174.1 → 3174.1.1
81Te8vooT1T:2-87Ribosomal_S15616 → 616.1 → 616.1.1
82ue8voou1u:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
83Ue8vooU1U:1-82Ribosomal_S16837 → 837.1 → 837.1.1
84ve8voov1v:1-136Ribosomal_L16325 → 325.1 → 325.1.5
85Ve8vooV1V:4-83Ribosomal_S172 → 2.1 → 2.1.1
86we8voow1w:14-117Ribosomal_L17218 → 218.3 → 218.3.1
87We8vooW1W:3-81Ribosomal_S19838 → 838.1 → 838.1.1
88xe8voox1x:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
89Xe8vooX1X:2-115Ribosomal_S13102 → 102.2 → 102.2.1
90ye8vooy1y:2-115Ribosomal_L194 → 4.1 → 4.1.1
91Ye8vooY1Y:2-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
92Ye8vooY2Y:73-142Ribosomal_L11101 → 101.1 → 101.1.16
93ze8vooz1z:2-118Ribosomal_L20143 → 143.2 → 143.2.1
94Ze8vooZ1Z:2-31Ribosomal_L12_N156 → 156.1 → 156.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors