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PDB 8VOP

0 chains93 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (93)

#ChainDomain IDRangeFamilyClassification
10e8vop010:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
21e8vop111:1-110Ribosomal_L22218 → 218.2 → 218.2.1
32e8vop212:6-99Ribosomal_L23304 → 304.109 → 304.109.1
43e8vop313:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
54e8vop414:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
69e8vop919:1-148Ribosomal_L10304 → 304.60 → 304.60.1
7AAe8vopAA1AA:1238-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
8AAe8vopAA2AA:153-226,AA:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
9AAe8vopAA3AA:828-942,AA:1042-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
10AAe8vopAA4AA:791-828,AA:1060-1125,AA:1180-1237RNA_pol_Rpb2_61 → 1.1 → 1.1.2
11AAe8vopAA5AA:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
12AAe8vopAA6AA:10-152,AA:450-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
13AAe8vopAA7AA:578-714RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
14ABe8vopAB1AB:123-181KOW4 → 4.1 → 4.1.1
15ACe8vopAC1AC:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
16ACe8vopAC2AC:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
17ACe8vopAC3AC:2-52,AC:179-236RNA_pol_L305 → 305.1 → 305.1.1
18ADe8vopAD1AD:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
19ADe8vopAD2AD:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
20ADe8vopAD3AD:2-52,AD:179-236RNA_pol_L305 → 305.1 → 305.1.1
21AEe8vopAE1AE:14-341RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
22AEe8vopAE2AE:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
23AEe8vopAE3AE:895-931,AE:1214-1389RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
24AEe8vopAE4AE:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
25AEe8vopAE5AE:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
26AEe8vopAE6AE:1023-1151325.1.7.0325 → 325.1 → 325.1.7
27AEe8vopAE7AE:811-894275.1.1.0275 → 275.1 → 275.1.1
28AEe8vopAE8AE:932-1022325.1.7.0325 → 325.1 → 325.1.7
29AEe8vopAE9AE:1152-1215325.1.7.0325 → 325.1 → 325.1.7
30AFe8vopAF1AF:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
31AGe8vopAG1AG:1-127NusA_N885 → 885.1 → 885.1.1
32AGe8vopAG2AG:199-278KH_5327 → 327.11 → 327.11.1
33AGe8vopAG3AG:126-199S12 → 2.1 → 2.1.1
34AGe8vopAG4AG:345-422102.1.1.0102 → 102.1 → 102.1.1
35AGe8vopAG5AG:423-495HHH_5102 → 102.1 → 102.1.1
36AGe8vopAG6AG:279-346KH_NusA_2nd327 → 327.11 → 327.11.1
37be8vopb1b:7-85Ribosomal_L27325 → 325.1 → 325.1.8
38ce8vopc1c:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
39Ce8vopC1C:10-74Ribosomal_S18101 → 101.1 → 101.1.1
40ee8vope1e:1-60Ribosomal_L29192 → 192.4 → 192.4.1
41Ee8vopE1E:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
42fe8vopf1f:2-59Ribosomal_L30887 → 887.1 → 887.1.1
43Fe8vopF1F:4-68Ribosomal_S213666 → 3666.1 → 3666.1.1
44ge8vopg1g:1-70Ribosomal_L314987 → 4987.1 → 4987.1.1
45Ge8vopG1G:9-226Ribosomal_S22007 → 2007.6 → 2007.6.1
46he8voph1h:4-125Ribosomal_L22 → 2.1 → 2.1.1
47he8voph2h:126-270Ribosomal_L2_C4 → 4.1 → 4.1.1
48He8vopH1H:87-176,H:264-266S12 → 2.1 → 2.1.1
49He8vopH2H:267-362S12 → 2.1 → 2.1.1
50He8vopH3H:3-89S12 → 2.1 → 2.1.1
51He8vopH4H:363-435S12 → 2.1 → 2.1.1
52ie8vopi1i:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
53Ie8vopI1I:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
54Ie8vopI2I:2-106KH_2327 → 327.11 → 327.11.1
55je8vopj1j:1-209Ribosomal_L31 → 1.1 → 1.1.7
56Je8vopJ1J:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
57ke8vopk1k:4-53Ribosomal_L33375 → 375.1 → 375.1.1
58Ke8vopK1K:79-166Ribosomal_S5_C212 → 212.1 → 212.1.1
59Ke8vopK2K:10-78Ribosomal_S5330 → 330.1 → 330.1.1
60le8vopl1l:1-198Ribosomal_L47559 → 7559.1 → 7559.1.1
61Le8vopL1L:1-100Ribosomal_S6304 → 304.12 → 304.12.1
62me8vopm1m:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
63Me8vopM1M:2-152Ribosomal_S7167 → 167.1 → 167.1.1
64ne8vopn1n:2-179Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
65Ne8vopN1N:2-66Ribosomal_S8320 → 320.2 → 320.2.1
66Ne8vopN2N:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
67oe8vopo1o:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
68Oe8vopO1O:4-130Ribosomal_S9212 → 212.1 → 212.1.1
69pe8vopp1p:2-82Ribosomal_L6318 → 318.1 → 318.1.1
70pe8vopp2p:83-177Ribosomal_L6318 → 318.1 → 318.1.1
71Pe8vopP1P:5-102Ribosomal_S10304 → 304.44 → 304.44.1
72qe8vopq1q:1-38Ribosomal_L36919 → 919.1 → 919.1.1
73Qe8vopQ1Q:13-128Ribosomal_S112484 → 2484.1 → 2484.1.1
74re8vopr1r:1-52Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
75re8vopr2r:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
76Re8vopR1R:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
77se8vops1s:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
78Se8vopS1S:2-101Ribosomal_S14377 → 377.1 → 377.1.1
79te8vopt1t:2-122Ribosomal_L143174 → 3174.1 → 3174.1.1
80Te8vopT1T:2-87Ribosomal_S15616 → 616.1 → 616.1.1
81ue8vopu1u:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
82Ue8vopU1U:1-82Ribosomal_S16837 → 837.1 → 837.1.1
83ve8vopv1v:1-136Ribosomal_L16325 → 325.1 → 325.1.5
84Ve8vopV1V:4-83Ribosomal_S172 → 2.1 → 2.1.1
85we8vopw1w:14-117Ribosomal_L17218 → 218.3 → 218.3.1
86We8vopW1W:3-81Ribosomal_S19838 → 838.1 → 838.1.1
87xe8vopx1x:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
88Xe8vopX1X:2-115Ribosomal_S13102 → 102.2 → 102.2.1
89ye8vopy1y:2-115Ribosomal_L194 → 4.1 → 4.1.1
90Ye8vopY1Y:2-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
91Ye8vopY2Y:73-142Ribosomal_L11101 → 101.1 → 101.1.16
92ze8vopz1z:2-118Ribosomal_L20143 → 143.2 → 143.2.1
93Ze8vopZ1Z:2-31Ribosomal_L12_N156 → 156.1 → 156.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors