PDB 8WAS
ELECTRON MICROSCOPY0 chains75 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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9 domainsChain Oview chain
2 domainsChain pview chain
7 domainsChain Pview chain
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2 domainsChain Qview chain
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1 domainChain Rview chain
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1 domainAll Domains (75)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e8was01 | 0:1-69 | zf-C3HC4_5 | 376 → 376.1 → 376.1.1 |
| 2 | 0 | e8was02 | 0:70-149 | MAT1 | 386 → 386.1 → 386.1.1 |
| 3 | 2 | e8was21 | 2:54-241 | Ssl1 | 2006 → 2006.1 → 2006.1.6 |
| 4 | 3 | e8was31 | 3:5-72,3:100-231 | Tfb4 | 2006 → 2006.1 → 2006.1.6 |
| 5 | 4 | e8was41 | 4:388-459 | Tfb2_C | 4340 → 4340.1 → 4340.1.1 |
| 6 | 5 | e8was51 | 5:1-62 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 7 | 6 | e8was61 | 6:493-718 | Helicase_C, ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 8 | 6 | e8was62 | 6:244-492 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 9 | 7 | e8was71 | 7:11-243 | DEAD_2 | 2004 → 2004.1 → 2004.1.1 |
| 10 | A | e8wasA1 | A:795-880 | DUF3591 | 101 → 101.1 → 101.1.2 |
| 11 | A | e8wasA2 | A:588-794,A:881-971,A:1054-1083 | DUF3591 | 59 → 59.1 → 59.1.4 |
| 12 | A | e8wasA3 | A:36-86 | TBP-binding | 575 → 575.1 → 575.1.1 |
| 13 | B | e8wasB1 | B:255-648 | TAF2_3rd | 2498 → 2498.1 → 2498.1.1 |
| 14 | B | e8wasB2 | B:27-88,B:125-254 | Peptidase_M1_N | 4081 → 4081.1 → 4081.1.1 |
| 15 | B | e8wasB3 | B:649-976 | TPR_TAF2_C | 109 → 109.4 → 109.4.1 |
| 16 | c | e8wasc1 | c:1-72 | Bromo_TP | 148 → 148.1 → 148.1.1 |
| 17 | e | e8wase1 | e:417-799 | WD40 | 5 → 5.1 → 5.1.5 |
| 18 | e | e8wase2 | e:202-343,e:363-380 | TFIID_NTD2 | 4320 → 4320.1 → 4320.1.1 |
| 19 | E | e8wasE1 | E:417-799 | WD40 | 5 → 5.1 → 5.1.5 |
| 20 | E | e8wasE2 | E:202-343,E:363-380 | TFIID_NTD2 | 4320 → 4320.1 → 4320.1.1 |
| 21 | f | e8wasf1 | f:217-436 | TAF6_C | 109 → 109.4 → 109.4.1 |
| 22 | F | e8wasF1 | F:217-436 | TAF6_C | 109 → 109.4 → 109.4.1 |
| 23 | G | e8wasG1 | G:11-106,G:128-154 | TAFII55_N | 59 → 59.1 → 59.1.4 |
| 24 | j | e8wasj1 | j:113-208 | TFIID_30kDa | 148 → 148.1 → 148.1.1 |
| 25 | J | e8wasJ1 | J:113-208 | TFIID_30kDa | 148 → 148.1 → 148.1.1 |
| 26 | k | e8wask1 | k:113-201 | TAFII28 | 148 → 148.1 → 148.1.1 |
| 27 | l | e8wasl1 | l:55-128 | TFIID_20kDa | 148 → 148.1 → 148.1.1 |
| 28 | L | e8wasL1 | L:55-128 | TFIID_20kDa | 148 → 148.1 → 148.1.1 |
| 29 | m | e8wasm1 | m:31-75 | TFIID-18kDa | 148 → 148.1 → 148.1.1 |
| 30 | o | e8waso1 | o:10-157,o:180-350 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 31 | o | e8waso2 | o:1083-1135,o:1361-1485 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 32 | o | e8waso3 | o:389-449 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 33 | o | e8waso4 | o:351-388,o:450-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 34 | o | e8waso5 | o:1165-1297 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 35 | o | e8waso6 | o:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 36 | o | e8waso7 | o:1136-1164,o:1298-1360 | RNA_pol_Rpb1_5 | 4956 → 4956.1 → 4956.1.1 |
| 37 | o | e8waso8 | o:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 38 | o | e8waso9 | o:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 39 | O | e8wasO1 | O:1-53 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 40 | O | e8wasO2 | O:54-99 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 41 | p | e8wasp1 | p:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 42 | p | e8wasp2 | p:16-67,p:87-200,p:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 43 | p | e8wasp3 | p:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 44 | p | e8wasp4 | p:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 45 | p | e8wasp5 | p:769-805,p:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 46 | p | e8wasp6 | p:619-768 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 47 | p | e8wasp7 | p:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 48 | P | e8wasP1 | P:159-255 | TBP | 331 → 331.1 → 331.1.1 |
| 49 | P | e8wasP2 | P:256-338 | TBP | 331 → 331.1 → 331.1.1 |
| 50 | q | e8wasq1 | q:2-42,q:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 51 | q | e8wasq2 | q:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 52 | Q | e8wasQ1 | Q:322-376 | TFIIA | 74 → 74.1 → 74.1.1 |
| 53 | Q | e8wasQ2 | Q:9-51,Q:308-321 | TFIIA | 104 → 104.1 → 104.1.1 |
| 54 | r | e8wasr1 | r:14-142 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 55 | R | e8wasR1 | R:208-316 | TFIIB | 101 → 101.1 → 101.1.10 |
| 56 | R | e8wasR2 | R:105-207 | TFIIB | 101 → 101.1 → 101.1.10 |
| 57 | R | e8wasR3 | R:7-54 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 58 | s | e8wass1 | s:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 59 | s | e8wass2 | s:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 60 | S | e8wasS1 | S:5-54,S:93-180 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 61 | t | e8wast1 | t:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 62 | T | e8wasT1 | T:2-119 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 63 | T | e8wasT2 | T:175-238 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 64 | u | e8wasu1 | u:79-171 | S1 | 2 → 2.1 → 2.1.1 |
| 65 | u | e8wasu2 | u:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 66 | U | e8wasU1 | U:101-174 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 67 | U | e8wasU2 | U:11-100,U:175-204 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 68 | v | e8wasv1 | v:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 69 | V | e8wasV1 | V:147-206 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 70 | V | e8wasV2 | V:75-146 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 71 | w | e8wasw1 | w:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 72 | w | e8wasw2 | w:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 73 | x | e8wasx1 | x:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 74 | y | e8wasy1 | y:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 75 | z | e8wasz1 | z:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors