PDB 8YDE
0 chains87 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
Loading viewer...
Domains by Chain
Chain Aview chain
1 domainChain bview chain
2 domainsChain Bview chain
1 domainChain B1view chain
9 domainsChain B2view chain
7 domainsChain cview chain
1 domainChain Cview chain
1 domainChain dview chain
1 domainChain Dview chain
1 domainChain eview chain
1 domainChain Eview chain
1 domainChain fview chain
2 domainsChain Fview chain
1 domainChain gview chain
2 domainsChain Gview chain
1 domainChain Hview chain
2 domainsChain iview chain
2 domainsChain Iview chain
1 domainChain jview chain
1 domainChain Jview chain
2 domainsChain kview chain
1 domainChain Kview chain
1 domainChain lview chain
1 domainChain Lview chain
1 domainChain mview chain
1 domainChain Mview chain
2 domainsChain nview chain
1 domainChain Nview chain
1 domainChain NAview chain
6 domainsChain NGview chain
1 domainChain oview chain
1 domainChain Oview chain
1 domainChain pview chain
1 domainChain Pview chain
1 domainChain qview chain
1 domainChain Qview chain
1 domainChain rview chain
1 domainChain Rview chain
1 domainChain sview chain
1 domainChain Sview chain
1 domainChain tview chain
1 domainChain Tview chain
1 domainChain uview chain
1 domainChain Uview chain
1 domainChain vview chain
1 domainChain Vview chain
1 domainChain wview chain
1 domainChain Wview chain
1 domainChain W0view chain
1 domainChain xview chain
1 domainChain Xview chain
1 domainChain yview chain
1 domainChain Yview chain
1 domainChain zview chain
1 domainChain Zview chain
1 domainAll Domains (87)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8ydeA1 | A:1-70 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 2 | A1 | e8ydeA11 | A1:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | A1 | e8ydeA12 | A1:237-328 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 4 | A1 | e8ydeA13 | A1:2-52,A1:179-236 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | A2 | e8ydeA21 | A2:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 6 | A2 | e8ydeA22 | A2:237-328 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 7 | A2 | e8ydeA23 | A2:2-52,A2:179-236 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 8 | b | e8ydeb1 | b:4-125 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 9 | b | e8ydeb2 | b:126-270 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 10 | B | e8ydeB1 | B:2-57 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 11 | B1 | e8ydeB11 | B1:14-341 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 12 | B1 | e8ydeB12 | B1:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 13 | B1 | e8ydeB13 | B1:895-931,B1:1214-1389 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 14 | B1 | e8ydeB14 | B1:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 15 | B1 | e8ydeB15 | B1:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 16 | B1 | e8ydeB16 | B1:1023-1151 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 17 | B1 | e8ydeB17 | B1:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 18 | B1 | e8ydeB18 | B1:932-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 19 | B1 | e8ydeB19 | B1:1152-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 20 | B2 | e8ydeB21 | B2:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 21 | B2 | e8ydeB22 | B2:153-226,B2:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 22 | B2 | e8ydeB23 | B2:828-942,B2:1042-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 23 | B2 | e8ydeB24 | B2:791-828,B2:1060-1125,B2:1180-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 24 | B2 | e8ydeB25 | B2:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 25 | B2 | e8ydeB26 | B2:10-152,B2:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 26 | B2 | e8ydeB27 | B2:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 27 | c | e8ydec1 | c:1-209 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 28 | C | e8ydeC1 | C:4-53 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 29 | d | e8yded1 | d:1-198 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 30 | D | e8ydeD1 | D:1-46 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 31 | e | e8ydee1 | e:2-179 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 32 | E | e8ydeE1 | E:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 33 | f | e8ydef1 | f:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 34 | f | e8ydef2 | f:83-177 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 35 | F | e8ydeF1 | F:1-38 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 36 | g | e8ydeg1 | g:1-52 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 37 | g | e8ydeg2 | g:56-149 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 38 | G | e8ydeG1 | G:9-226 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 39 | H | e8ydeH1 | H:107-207 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 40 | H | e8ydeH2 | H:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 41 | i | e8ydei1 | i:2-72 | Ribosomal_L11_N | 3781 → 3781.1 → 3781.1.1 |
| 42 | i | e8ydei2 | i:73-142 | Ribosomal_L11 | 101 → 101.1 → 101.1.16 |
| 43 | I | e8ydeI1 | I:2-206 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 44 | j | e8ydej1 | j:1-140 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 45 | J | e8ydeJ1 | J:79-166 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 46 | J | e8ydeJ2 | J:10-78 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 47 | k | e8ydek1 | k:2-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 48 | K | e8ydeK1 | K:1-100 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 49 | l | e8ydel1 | l:1-144 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 50 | L | e8ydeL1 | L:2-152 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 51 | m | e8ydem1 | m:1-136 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 52 | M | e8ydeM1 | M:2-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 53 | M | e8ydeM2 | M:67-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 54 | n | e8yden1 | n:14-117 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 55 | N | e8ydeN1 | N:4-130 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 56 | NA | e8ydeNA1 | NA:1-127 | NusA_N | 885 → 885.1 → 885.1.1 |
| 57 | NA | e8ydeNA2 | NA:199-278 | KH_5 | 327 → 327.11 → 327.11.1 |
| 58 | NA | e8ydeNA3 | NA:126-199 | S1 | 2 → 2.1 → 2.1.1 |
| 59 | NA | e8ydeNA4 | NA:345-422 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 60 | NA | e8ydeNA5 | NA:423-495 | HHH_5 | 102 → 102.1 → 102.1.1 |
| 61 | NA | e8ydeNA6 | NA:279-346 | KH_NusA_2nd | 327 → 327.11 → 327.11.1 |
| 62 | NG | e8ydeNG1 | NG:123-181 | KOW | 4 → 4.1 → 4.1.1 |
| 63 | o | e8ydeo1 | o:1-117 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 64 | O | e8ydeO1 | O:5-102 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 65 | p | e8ydep1 | p:2-115 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 66 | P | e8ydeP1 | P:13-128 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 67 | q | e8ydeq1 | q:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 68 | Q | e8ydeQ1 | Q:2-124 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 69 | r | e8yder1 | r:1-103 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 70 | R | e8ydeR1 | R:2-115 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 71 | s | e8ydes1 | s:1-110 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 72 | S | e8ydeS1 | S:2-101 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 73 | t | e8ydet1 | t:6-99 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 74 | T | e8ydeT1 | T:2-87 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 75 | u | e8ydeu1 | u:2-103 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 76 | U | e8ydeU1 | U:1-82 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 77 | v | e8ydev1 | v:1-94 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 78 | V | e8ydeV1 | V:4-83 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 79 | w | e8ydew1 | w:7-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 80 | W | e8ydeW1 | W:10-74 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 81 | W0 | e8ydeW01 | W0:2-90 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 82 | x | e8ydex1 | x:2-78 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 83 | X | e8ydeX1 | X:3-81 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 84 | y | e8ydey1 | y:1-60 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 85 | Y | e8ydeY1 | Y:3-87 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 86 | z | e8ydez1 | z:2-59 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 87 | Z | e8ydeZ1 | Z:4-68 | Ribosomal_S21 | 3666 → 3666.1 → 3666.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors