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PDB 8YDE

0 chains87 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (87)

#ChainDomain IDRangeFamilyClassification
1Ae8ydeA1A:1-70Ribosomal_L314987 → 4987.1 → 4987.1.1
2A1e8ydeA11A1:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
3A1e8ydeA12A1:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
4A1e8ydeA13A1:2-52,A1:179-236RNA_pol_L305 → 305.1 → 305.1.1
5A2e8ydeA21A2:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
6A2e8ydeA22A2:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
7A2e8ydeA23A2:2-52,A2:179-236RNA_pol_L305 → 305.1 → 305.1.1
8be8ydeb1b:4-125Ribosomal_L22 → 2.1 → 2.1.1
9be8ydeb2b:126-270Ribosomal_L2_C4 → 4.1 → 4.1.1
10Be8ydeB1B:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
11B1e8ydeB11B1:14-341RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
12B1e8ydeB12B1:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
13B1e8ydeB13B1:895-931,B1:1214-1389RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
14B1e8ydeB14B1:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
15B1e8ydeB15B1:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
16B1e8ydeB16B1:1023-1151325.1.7.0325 → 325.1 → 325.1.7
17B1e8ydeB17B1:811-894275.1.1.0275 → 275.1 → 275.1.1
18B1e8ydeB18B1:932-1022325.1.7.0325 → 325.1 → 325.1.7
19B1e8ydeB19B1:1152-1215325.1.7.0325 → 325.1 → 325.1.7
20B2e8ydeB21B2:1238-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
21B2e8ydeB22B2:153-226,B2:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
22B2e8ydeB23B2:828-942,B2:1042-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
23B2e8ydeB24B2:791-828,B2:1060-1125,B2:1180-1237RNA_pol_Rpb2_61 → 1.1 → 1.1.2
24B2e8ydeB25B2:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
25B2e8ydeB26B2:10-152,B2:450-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
26B2e8ydeB27B2:578-714RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
27ce8ydec1c:1-209Ribosomal_L31 → 1.1 → 1.1.7
28Ce8ydeC1C:4-53Ribosomal_L33375 → 375.1 → 375.1.1
29de8yded1d:1-198Ribosomal_L47559 → 7559.1 → 7559.1.1
30De8ydeD1D:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
31ee8ydee1e:2-179Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
32Ee8ydeE1E:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
33fe8ydef1f:2-82Ribosomal_L6318 → 318.1 → 318.1.1
34fe8ydef2f:83-177Ribosomal_L6318 → 318.1 → 318.1.1
35Fe8ydeF1F:1-38Ribosomal_L36919 → 919.1 → 919.1.1
36ge8ydeg1g:1-52Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
37ge8ydeg2g:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
38Ge8ydeG1G:9-226Ribosomal_S22007 → 2007.6 → 2007.6.1
39He8ydeH1H:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
40He8ydeH2H:2-106KH_2327 → 327.11 → 327.11.1
41ie8ydei1i:2-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
42ie8ydei2i:73-142Ribosomal_L11101 → 101.1 → 101.1.16
43Ie8ydeI1I:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
44je8ydej1j:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
45Je8ydeJ1J:79-166Ribosomal_S5_C212 → 212.1 → 212.1.1
46Je8ydeJ2J:10-78Ribosomal_S5330 → 330.1 → 330.1.1
47ke8ydek1k:2-122Ribosomal_L143174 → 3174.1 → 3174.1.1
48Ke8ydeK1K:1-100Ribosomal_S6304 → 304.12 → 304.12.1
49le8ydel1l:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
50Le8ydeL1L:2-152Ribosomal_S7167 → 167.1 → 167.1.1
51me8ydem1m:1-136Ribosomal_L16325 → 325.1 → 325.1.5
52Me8ydeM1M:2-66Ribosomal_S8320 → 320.2 → 320.2.1
53Me8ydeM2M:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
54ne8yden1n:14-117Ribosomal_L17218 → 218.3 → 218.3.1
55Ne8ydeN1N:4-130Ribosomal_S9212 → 212.1 → 212.1.1
56NAe8ydeNA1NA:1-127NusA_N885 → 885.1 → 885.1.1
57NAe8ydeNA2NA:199-278KH_5327 → 327.11 → 327.11.1
58NAe8ydeNA3NA:126-199S12 → 2.1 → 2.1.1
59NAe8ydeNA4NA:345-422102.1.1.0102 → 102.1 → 102.1.1
60NAe8ydeNA5NA:423-495HHH_5102 → 102.1 → 102.1.1
61NAe8ydeNA6NA:279-346KH_NusA_2nd327 → 327.11 → 327.11.1
62NGe8ydeNG1NG:123-181KOW4 → 4.1 → 4.1.1
63oe8ydeo1o:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
64Oe8ydeO1O:5-102Ribosomal_S10304 → 304.44 → 304.44.1
65pe8ydep1p:2-115Ribosomal_L194 → 4.1 → 4.1.1
66Pe8ydeP1P:13-128Ribosomal_S112484 → 2484.1 → 2484.1.1
67qe8ydeq1q:2-118Ribosomal_L20143 → 143.2 → 143.2.1
68Qe8ydeQ1Q:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
69re8yder1r:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
70Re8ydeR1R:2-115Ribosomal_S13102 → 102.2 → 102.2.1
71se8ydes1s:1-110Ribosomal_L22218 → 218.2 → 218.2.1
72Se8ydeS1S:2-101Ribosomal_S14377 → 377.1 → 377.1.1
73te8ydet1t:6-99Ribosomal_L23304 → 304.109 → 304.109.1
74Te8ydeT1T:2-87Ribosomal_S15616 → 616.1 → 616.1.1
75ue8ydeu1u:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
76Ue8ydeU1U:1-82Ribosomal_S16837 → 837.1 → 837.1.1
77ve8ydev1v:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
78Ve8ydeV1V:4-83Ribosomal_S172 → 2.1 → 2.1.1
79we8ydew1w:7-85Ribosomal_L27325 → 325.1 → 325.1.8
80We8ydeW1W:10-74Ribosomal_S18101 → 101.1 → 101.1.1
81W0e8ydeW01W0:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
82xe8ydex1x:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
83Xe8ydeX1X:3-81Ribosomal_S19838 → 838.1 → 838.1.1
84ye8ydey1y:1-60Ribosomal_L29192 → 192.4 → 192.4.1
85Ye8ydeY1Y:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
86ze8ydez1z:2-59Ribosomal_L30887 → 887.1 → 887.1.1
87Ze8ydeZ1Z:4-68Ribosomal_S213666 → 3666.1 → 3666.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors