ECODEvolutionary Classification of Protein Domains

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PDB 8YGJ

0 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

5 domains

e8ygjA1(A:543-712,A:753-754,A:793-800,A:888-889,A:905-905,A:941-949,A:991-1003)e8ygjA2(A:713-752,A:755-768,A:929-940,A:950-990,A:1004-1025)e8ygjA3(A:769-792,A:801-887,A:890-904,A:906-928)e8ygjA4(A:1100-1198)e8ygjA5(A:1199-1367)

Chain Eview chain

3 domains

e8ygjE1(E:64-305,E:333-334)e8ygjE2(E:306-332,E:335-381)e8ygjE3(E:382-407)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e8ygjA1	A:543-712,A:753-754,A:793-800,A:888-889,A:905-905,A:941-949,A:991-1003	Cas9_REC	3819 → 3819.1 → 3819.1.1
2	A	e8ygjA2	A:713-752,A:755-768,A:929-940,A:950-990,A:1004-1025	Cas9_RuvC	2484 → 2484.1 → 2484.1.1
3	A	e8ygjA3	A:769-792,A:801-887,A:890-904,A:906-928	HNH_4	378 → 378.1 → 378.1.1
4	A	e8ygjA4	A:1100-1198	Cas9_PI	3820 → 3820.1 → 3820.1.1
5	A	e8ygjA5	A:1199-1367	Cas9_PI	3820 → 3820.1 → 3820.1.1
6	E	e8ygjE1	E:64-305,E:333-334	RVT_1	304 → 304.48 → 304.48.1
7	E	e8ygjE2	E:306-332,E:335-381	RT_RNaseH_2	2484 → 2484.5 → 2484.5.1
8	E	e8ygjE3	E:382-407	2484.5.1.0	2484 → 2484.5 → 2484.5.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors