PDB 9FD2
0 chains36 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain aview chain
1 domainChain Aview chain
7 domainsChain bview chain
4 domainsChain Bview chain
7 domainse9fd2B1(B:182-334,B:351-355,B:373-380,B:531-666,B:672-673,B:677-685,B:730-736,B:751-757,B:786-793,B:811-816,B:965-968,B:997-1002,B:1007-1013,B:1022-1022,B:1036-1036)e9fd2B2(B:335-350,B:356-372,B:381-530)e9fd2B3(B:667-671,B:674-676,B:686-729,B:737-750,B:758-778)e9fd2B4(B:779-785,B:794-810,B:817-907)e9fd2B5(B:908-943,B:1069-1194)e9fd2B6(B:944-964,B:969-996,B:1003-1006,B:1014-1021,B:1023-1035,B:1037-1068)e9fd2B7(B:1195-1249)
Chain Cview chain
2 domainsChain Dview chain
1 domainChain eview chain
2 domainsChain Eview chain
2 domainsChain fview chain
1 domainChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainAll Domains (36)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e9fd2a1 | a:1-365 | WD40 | 5 → 5.1 → 5.1.4 |
| 2 | A | e9fd2A1 | A:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 3 | A | e9fd2A2 | A:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 4 | A | e9fd2A3 | A:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e9fd2A4 | A:1152-1308 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 6 | A | e9fd2A5 | A:364-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 7 | A | e9fd2A6 | A:1083-1135,A:1361-1415,A:1469-1484 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 8 | A | e9fd2A7 | A:1136-1151,A:1309-1360 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 9 | b | e9fd2b1 | b:1-376,b:505-506,b:581-581,b:759-763,b:798-798,b:845-846,b:862-863,b:932-932,b:1037-1044 | MMS1_N | 5 → 5.1 → 5.1.4 |
| 10 | b | e9fd2b2 | b:377-414,b:731-758,b:764-797,b:799-844,b:847-861,b:864-931,b:933-1036,b:1045-1063 | CPSF_A | 101 → 101.1 → 101.1.1 |
| 11 | b | e9fd2b3 | b:415-504,b:507-580,b:582-730 | Beta-prop_RSE1_2nd | 5 → 5.1 → 5.1.4 |
| 12 | b | e9fd2b4 | b:1064-1132 | CPSF_A | 101 → 101.1 → 101.1.1 |
| 13 | B | e9fd2B1 | B:182-334,B:351-355,B:373-380,B:531-666,B:672-673,B:677-685,B:730-736,B:751-757,B:786-793,B:811-816,B:965-968,B:997-1002,B:1007-1013,B:1022-1022,B:1036-1036 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 14 | B | e9fd2B2 | B:335-350,B:356-372,B:381-530 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 15 | B | e9fd2B3 | B:667-671,B:674-676,B:686-729,B:737-750,B:758-778 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 16 | B | e9fd2B4 | B:779-785,B:794-810,B:817-907 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 17 | B | e9fd2B5 | B:908-943,B:1069-1194 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 18 | B | e9fd2B6 | B:944-964,B:969-996,B:1003-1006,B:1014-1021,B:1023-1035,B:1037-1068 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 19 | B | e9fd2B7 | B:1195-1249 | RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 20 | C | e9fd2C1 | C:2-42,C:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 21 | C | e9fd2C2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 22 | D | e9fd2D1 | D:14-142 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 23 | e | e9fd2e1 | e:490-754 | SNF2-rel_dom | 2004 → 2004.1 → 2004.1.1 |
| 24 | e | e9fd2e2 | e:755-1025,e:1383-1399 | SNF2-rel_dom,Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 25 | E | e9fd2E1 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 26 | E | e9fd2E2 | E:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 27 | f | e9fd2f01 | f:-1-83 | Elf1 | 375 → 375.1 → 375.1.1 |
| 28 | F | e9fd2F1 | F:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 29 | G | e9fd2G1 | G:79-171 | S1 | 2 → 2.1 → 2.1.1 |
| 30 | G | e9fd2G2 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 31 | H | e9fd2H1 | H:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 32 | I | e9fd2I1 | I:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 33 | I | e9fd2I2 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 34 | J | e9fd2J1 | J:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 35 | K | e9fd2K1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 36 | L | e9fd2L1 | L:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors