PDB 9GDB
0 chains31 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
9 domainsChain Dview chain
9 domainsChain Eview chain
1 domainAll Domains (31)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e9gdbA1 | A:3-56,A:175-233 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e9gdbA2 | A:57-174 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e9gdbB1 | B:4-57,B:176-234 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e9gdbB2 | B:58-175 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e9gdbC1 | C:2-152,C:1116-1139 | RNA_pol_Rpb2_1 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e9gdbC2 | C:153-228,C:335-432 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e9gdbC3 | C:229-334 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 8 | C | e9gdbC4 | C:308-315,C:433-540 | RNA_pol_Rpb2_2, RNA_pol_Rpb2_1, RNA_pol_Rpb2_3 | 4041 → 4041.1 → 4041.1.1 |
| 9 | C | e9gdbC5 | C:667-803 | RNA_pol_Rpb2_6 | 4042 → 4042.1 → 4042.1.1 |
| 10 | C | e9gdbC6 | C:804-879 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | C | e9gdbC7 | C:928-1053 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 12 | C | e9gdbC8 | C:1054-1115,C:1140-1142,C:1171-1234 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | C | e9gdbC9 | C:1235-1329 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 14 | D | e9gdbD1 | D:14-352 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 15 | D | e9gdbD2 | D:345-508 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 16 | D | e9gdbD3 | D:509-648 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 17 | D | e9gdbD4 | D:649-820 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 18 | D | e9gdbD5 | D:821-904 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 19 | D | e9gdbD6 | D:905-929,D:1221-1368 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 20 | D | e9gdbD7 | D:930-1031 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 21 | D | e9gdbD8 | D:1032-1157 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | D | e9gdbD9 | D:1158-1220 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 23 | E | e9gdbE1 | E:2-91 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 24 | F | e9gdbF1 | F:2-175 | Toprim | 2006 → 2006.1 → 2006.1.3 |
| 25 | F | e9gdbF2 | F:176-240,F:485-597 | Topoisom_bac | 101 → 101.1 → 101.1.2 |
| 26 | F | e9gdbF3 | F:234-299,F:415-484 | Topoisom_bac | 264 → 264.2 → 264.2.1 |
| 27 | F | e9gdbF4 | F:300-414 | Topoisom_bac | 101 → 101.1 → 101.1.2 |
| 28 | F | e9gdbF5 | F:598-641 | zf-C4_Topoisom | 375 → 375.1 → 375.1.1 |
| 29 | F | e9gdbF6 | F:642-706 | TOP1_ZnF | 375 → 375.1 → 375.1.1 |
| 30 | F | e9gdbF7 | F:707-749 | zf-C4_Topoisom | 375 → 375.1 → 375.1.1 |
| 31 | F | e9gdbF8 | F:750-813 | Topo_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors