PDB 9GDD
0 chains31 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
9 domainsChain Dview chain
9 domainsChain Eview chain
1 domainAll Domains (31)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e9gddA1 | A:1-54,A:173-231 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e9gddA2 | A:55-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e9gddB1 | B:1-54,B:173-231 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e9gddB2 | B:55-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e9gddC1 | C:1-151,C:1115-1138 | RNA_pol_Rpb2_1 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e9gddC2 | C:152-227,C:334-431 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e9gddC3 | C:228-333 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 8 | C | e9gddC4 | C:307-314,C:432-539 | RNA_pol_Rpb2_2, RNA_pol_Rpb2_1, RNA_pol_Rpb2_3 | 4041 → 4041.1 → 4041.1.1 |
| 9 | C | e9gddC5 | C:666-802 | RNA_pol_Rpb2_6 | 4042 → 4042.1 → 4042.1.1 |
| 10 | C | e9gddC6 | C:803-878 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | C | e9gddC7 | C:927-1052 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 12 | C | e9gddC8 | C:1053-1114,C:1139-1141,C:1170-1233 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | C | e9gddC9 | C:1234-1328 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 14 | D | e9gddD1 | D:1-339 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 15 | D | e9gddD2 | D:332-495 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 16 | D | e9gddD3 | D:496-635 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 17 | D | e9gddD4 | D:636-807 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 18 | D | e9gddD5 | D:808-891 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 19 | D | e9gddD6 | D:892-916,D:1187-1334 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 20 | D | e9gddD7 | D:917-1004 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 21 | D | e9gddD8 | D:1005-1123 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | D | e9gddD9 | D:1124-1186 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 23 | E | e9gddE1 | E:1-90 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 24 | F | e9gddF1 | F:1-156 | Toprim | 2006 → 2006.1 → 2006.1.3 |
| 25 | F | e9gddF2 | F:157-221,F:466-578 | Topoisom_bac | 101 → 101.1 → 101.1.2 |
| 26 | F | e9gddF3 | F:215-280,F:396-465 | Topoisom_bac | 264 → 264.2 → 264.2.1 |
| 27 | F | e9gddF4 | F:281-395 | Topoisom_bac | 101 → 101.1 → 101.1.2 |
| 28 | F | e9gddF5 | F:579-622 | zf-C4_Topoisom | 375 → 375.1 → 375.1.1 |
| 29 | F | e9gddF6 | F:623-687 | TOP1_ZnF | 375 → 375.1 → 375.1.1 |
| 30 | F | e9gddF7 | F:688-730 | zf-C4_Topoisom | 375 → 375.1 → 375.1.1 |
| 31 | F | e9gddF8 | F:731-794 | Topo_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors