ECODEvolutionary Classification of Protein Domains

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PDB 9PHW

42 chains44 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aPhotosystem II protein D1 2view chain

1 domain

e9phwa1(a:64-321)

Chain APhotosystem II protein D1 2view chain

1 domain

e9phwA1(A:64-321)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e9phwb1(b:2-328,b:445-479)e9phwb2(b:329-444)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e9phwB1(B:2-328,B:445-479)e9phwB2(B:329-444)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e9phwc1(c:11-431)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e9phwC1(C:11-431)

Chain dPhotosystem II D2 proteinview chain

1 domain

e9phwd1(d:68-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e9phwD1(D:68-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e9phwe1(e:3-80)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e9phwE1(E:3-80)

Chain fCytochrome b559 subunit betaview chain

1 domain

e9phwf1(f:11-44)

Chain FCytochrome b559 subunit betaview chain

1 domain

e9phwF1(F:11-44)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e9phwh1(h:2-64)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e9phwH1(H:2-64)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e9phwi1(i:2-37)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e9phwI1(I:2-37)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e9phwj1(j:5-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e9phwJ1(J:5-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e9phwk1(k:9-45)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e9phwK1(K:9-45)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e9phwl1(l:1-39)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e9phwL1(L:1-39)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e9phwm1(m:2-31)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e9phwM1(M:2-31)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e9phwo1(o:31-272)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e9phwO1(O:31-272)

Chain qSll1638 proteinview chain

1 domain

e9phwq1(q:33-146)

Chain QSll1638 proteinview chain

1 domain

e9phwQ1(Q:33-146)

Chain rPhotosystem II protein Yview chain

1 domain

e9phwr1(r:2-35)

Chain RPhotosystem II protein Yview chain

1 domain

e9phwR1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e9phwt1(t:2-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e9phwT1(T:2-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e9phwu1(u:37-131)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e9phwU1(U:37-131)

Chain vCytochrome c-550view chain

1 domain

e9phwv1(v:26-160)

Chain VCytochrome c-550view chain

1 domain

e9phwV1(V:26-160)

Chain xPhotosystem II reaction center X proteinview chain

1 domain

e9phwx1(x:1-38)

Chain XPhotosystem II reaction center X proteinview chain

1 domain

e9phwX1(X:1-38)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e9phwy1(y:62-93)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e9phwY1(Y:62-93)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e9phwz1(z:2-61)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e9phwZ1(Z:2-61)

All Domains (44)

#	Chain	Domain ID	Range	Family	Classification
1	a	e9phwa1	a:64-321	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e9phwA1	A:64-321	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e9phwb1	b:2-328,b:445-479	PSII	5075 → 5075.1 → 5075.1.1
4	b	e9phwb2	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
5	B	e9phwB1	B:2-328,B:445-479	PSII	5075 → 5075.1 → 5075.1.1
6	B	e9phwB2	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
7	c	e9phwc1	c:11-431	PSII	5075 → 5075.1 → 5075.1.1
8	C	e9phwC1	C:11-431	PSII	5075 → 5075.1 → 5075.1.1
9	d	e9phwd1	d:68-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e9phwD1	D:68-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e9phwe1	e:3-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e9phwE1	E:3-80	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e9phwf1	f:11-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e9phwF1	F:11-44	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e9phwh1	h:2-64	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e9phwH1	H:2-64	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e9phwi1	i:2-37	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e9phwI1	I:2-37	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e9phwj1	j:5-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e9phwJ1	J:5-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e9phwk1	k:9-45	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e9phwK1	K:9-45	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e9phwl1	l:1-39	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e9phwL1	L:1-39	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e9phwm1	m:2-31	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e9phwM1	M:2-31	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e9phwo1	o:31-272	MSP	5084 → 5084.1 → 5084.1.1
28	O	e9phwO1	O:31-272	MSP	5084 → 5084.1 → 5084.1.1
29	q	e9phwq1	q:33-146	PsbQ	601 → 601.18 → 601.18.1
30	Q	e9phwQ1	Q:33-146	PsbQ	601 → 601.18 → 601.18.1
31	r	e9phwr1	r:2-35	PsbY	6106 → 6106.1 → 6106.1.1
32	R	e9phwR1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
33	t	e9phwt1	t:2-30	PsbT	3390 → 3390.1 → 3390.1.1
34	T	e9phwT1	T:2-30	PsbT	3390 → 3390.1 → 3390.1.1
35	u	e9phwu1	u:37-131	PsbU	102 → 102.1 → 102.1.1
36	U	e9phwU1	U:37-131	PsbU	102 → 102.1 → 102.1.1
37	v	e9phwv1	v:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
38	V	e9phwV1	V:26-160	Cytochrom_C550	107 → 107.1 → 107.1.1
39	x	e9phwx1	x:1-38	PsbX	3493 → 3493.1 → 3493.1.1
40	X	e9phwX1	X:1-38	PsbX	3493 → 3493.1 → 3493.1.1
41	y	e9phwy1	y:62-93	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
42	Y	e9phwY1	Y:62-93	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
43	z	e9phwz1	z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1
44	Z	e9phwZ1	Z:2-61	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors