PDB 9VD9
0 chains45 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 1view chain
9 domainsChain 2view chain
7 domainse9vd921(2:182-334,2:351-355,2:373-380,2:531-666,2:672-673,2:677-685,2:730-736,2:751-757,2:786-793,2:811-816,2:965-968,2:997-1002,2:1007-1013,2:1022-1022,2:1036-1036)e9vd922(2:335-350,2:356-372,2:381-530)e9vd923(2:667-671,2:674-676,2:686-729,2:737-750,2:758-778)e9vd924(2:779-785,2:794-810,2:817-907)e9vd925(2:908-943,2:1069-1194)e9vd926(2:944-964,2:969-996,2:1003-1006,2:1014-1021,2:1023-1035,2:1037-1068)e9vd927(2:1195-1249)
Chain 3view chain
2 domainsChain 4view chain
2 domainsChain 5view chain
1 domainChain 6view chain
1 domainChain 7view chain
2 domainsChain 8view chain
1 domainChain 9view chain
1 domainChain aview chain
1 domainChain iview chain
1 domainChain Iview chain
2 domainsChain jview chain
7 domainsChain kview chain
2 domainsChain lview chain
1 domainChain Pview chain
1 domainChain Qview chain
1 domainAll Domains (45)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 1 | e9vd911 | 1:10-157,1:180-350 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | 1 | e9vd912 | 1:1083-1135,1:1361-1485 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 3 | 1 | e9vd913 | 1:389-449 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 4 | 1 | e9vd914 | 1:351-388,1:450-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 5 | 1 | e9vd915 | 1:1165-1297 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 6 | 1 | e9vd916 | 1:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 7 | 1 | e9vd917 | 1:1136-1164,1:1298-1360 | RNA_pol_Rpb1_5 | 4956 → 4956.1 → 4956.1.1 |
| 8 | 1 | e9vd918 | 1:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 9 | 1 | e9vd919 | 1:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 10 | 2 | e9vd921 | 2:182-334,2:351-355,2:373-380,2:531-666,2:672-673,2:677-685,2:730-736,2:751-757,2:786-793,2:811-816,2:965-968,2:997-1002,2:1007-1013,2:1022-1022,2:1036-1036 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | 2 | e9vd922 | 2:335-350,2:356-372,2:381-530 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 12 | 2 | e9vd923 | 2:667-671,2:674-676,2:686-729,2:737-750,2:758-778 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 13 | 2 | e9vd924 | 2:779-785,2:794-810,2:817-907 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 14 | 2 | e9vd925 | 2:908-943,2:1069-1194 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 15 | 2 | e9vd926 | 2:944-964,2:969-996,2:1003-1006,2:1014-1021,2:1023-1035,2:1037-1068 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 16 | 2 | e9vd927 | 2:1195-1249 | RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 17 | 3 | e9vd931 | 3:2-42,3:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 18 | 3 | e9vd932 | 3:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 19 | 4 | e9vd941 | 4:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 20 | 4 | e9vd942 | 4:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 21 | 5 | e9vd951 | 5:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 22 | 6 | e9vd961 | 6:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 23 | 7 | e9vd971 | 7:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 24 | 7 | e9vd972 | 7:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 25 | 8 | e9vd981 | 8:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 26 | 9 | e9vd991 | 9:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 27 | a | e9vd9a1 | a:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 28 | i | e9vd9i1 | i:2-117 | Spt4 | 375 → 375.1 → 375.1.1 |
| 29 | I | e9vd9I1 | I:1-266,I:424-556 | Lactamase_B_6 | 247 → 247.1 → 247.1.1 |
| 30 | I | e9vd9I2 | I:267-343,I:372-423 | Beta-Casp | 2004 → 2004.1 → 2004.1.1 |
| 31 | j | e9vd9j1 | j:270-396 | KOW1_SPT5 | 4 → 4.1 → 4.1.1 |
| 32 | j | e9vd9j2 | j:176-269 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 33 | j | e9vd9j3 | j:471-526 | KOW | 4 → 4.1 → 4.1.1 |
| 34 | j | e9vd9j4 | j:416-470 | KOW2_Spt5 | 4 → 4.1 → 4.1.1 |
| 35 | j | e9vd9j5 | j:581-646 | KOW4_SPT5 | 4 → 4.1 → 4.1.1 |
| 36 | j | e9vd9j6 | j:703-754 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
| 37 | j | e9vd9j7 | j:527-580 | KOWx_SPT5 | 4 → 4.1 → 4.1.1 |
| 38 | k | e9vd9k1 | k:79-171 | S1 | 2 → 2.1 → 2.1.1 |
| 39 | k | e9vd9k2 | k:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 40 | K | e9vd9K1 | K:493-599 | IntS11_C | 331 → 331.23 → 331.23.1 |
| 41 | K | e9vd9K2 | K:11-225,K:385-492 | RMMBL,Lactamase_B_6 | 247 → 247.1 → 247.1.1 |
| 42 | K | e9vd9K3 | K:218-384 | Beta-Casp | 2004 → 2004.1 → 2004.1.1 |
| 43 | l | e9vd9l1 | l:14-142 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 44 | P | e9vd9P1 | P:9-589 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 45 | Q | e9vd9Q1 | Q:7-292 | Metallophos | 246 → 246.2 → 246.2.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors