Query FBpp0084426 type=protein; loc=3R:complement(26626008..26626697); ID=FBpp0084426; name=TwdlO-PA; parent=FBgn0039438,FBtr0085054; dbxref=FlyBase:FBpp0084426,FlyBase_Annotation_IDs:CG6452-PA,GB_protein:AAF56604.1,REFSEQ:NP_651487,GB_protein:AAF56604,FlyMine:FBpp0084426,modMine:FBpp0084426; MD5=9535d7d9cde3bc16fd96c44d0179be27; length=229; release=r6.06; species=Dmel; Match_columns 229 No_of_seqs 137 out of 175 Neff 3.6 Searched_HMMs 35384 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ek1_A RNA-binding protein 12; 76.7 12 0.00033 25.7 6.6 21 149-169 59-79 (95) 2 2fc8_A NCL protein; structure 72.7 8.9 0.00025 27.1 5.3 22 149-170 56-77 (102) 3 2rt3_A Negative regulator of d 63.2 17 0.00047 25.4 5.1 57 113-169 14-76 (97) 4 2cpe_A RNA-binding protein EWS 60.5 46 0.0013 23.6 7.1 21 149-169 67-87 (113) 5 1x4e_A RNA binding motif, sing 59.3 11 0.00032 25.3 3.5 22 149-170 49-70 (85) 6 2mtg_A LA-related protein 6; L 57.1 11 0.00032 28.0 3.5 23 148-170 81-103 (119) 7 2cqh_A IGF-II mRNA-binding pro 56.9 51 0.0014 22.6 6.8 56 115-170 6-67 (93) 8 2qfj_A FBP-interacting repress 55.7 79 0.0022 24.5 8.5 62 114-177 122-195 (216) 9 2wbr_A GW182, gawky, LD47780P; 55.3 11 0.00031 26.7 3.0 53 117-169 7-65 (89) 10 4fxw_A Splicing factor U2AF 65 54.8 10 0.0003 27.0 2.8 23 148-170 61-83 (106) 11 3mdf_A Peptidyl-prolyl CIS-tra 54.7 12 0.00034 25.2 3.0 21 149-169 51-71 (85) 12 2pe8_A Splicing factor 45; RRM 53.3 12 0.00034 26.8 3.0 23 148-170 57-79 (105) 13 1wex_A Hypothetical protein (r 52.7 15 0.00041 26.1 3.3 21 149-169 53-73 (104) 14 2hvz_A Splicing factor, argini 52.5 14 0.00039 26.1 3.2 28 148-177 38-65 (101) 15 3ns6_A Eukaryotic translation 52.1 13 0.00037 25.9 3.0 21 149-169 56-76 (100) 16 3p5t_L Cleavage and polyadenyl 51.6 8.7 0.00024 26.4 1.9 28 149-178 47-74 (90) 17 1wg1_A KIAA1579 protein, homol 51.6 12 0.00033 25.8 2.5 21 149-169 42-62 (88) 18 2dgp_A Bruno-like 4, RNA bindi 51.2 14 0.00039 26.1 3.0 21 149-169 57-77 (106) 19 2dgv_A HnRNP M, heterogeneous 51.1 14 0.00041 25.4 3.0 22 149-170 50-71 (92) 20 1x4d_A Matrin 3; structural ge 51.0 13 0.00037 26.3 2.8 23 148-170 53-75 (102) 21 3md1_A Nuclear and cytoplasmic 50.8 15 0.00043 24.5 3.0 21 149-169 45-65 (83) 22 2e5h_A Zinc finger CCHC-type a 50.6 12 0.00034 25.7 2.5 21 149-169 60-80 (94) 23 1fxl_A Paraneoplastic encephal 50.5 11 0.00032 27.9 2.5 60 116-177 87-158 (167) 24 3ue2_A Poly(U)-binding-splicin 50.3 14 0.0004 27.0 3.0 22 149-170 73-94 (118) 25 2dnh_A Bruno-like 5, RNA bindi 50.2 15 0.00041 26.0 3.0 21 149-169 58-78 (105) 26 2cqc_A Arginine/serine-rich sp 50.2 15 0.00043 25.3 3.0 21 149-169 59-79 (95) 27 2dgt_A RNA-binding protein 30; 50.0 15 0.00044 25.4 3.0 21 149-169 46-66 (92) 28 2cph_A RNA binding motif prote 49.9 16 0.00045 25.7 3.1 22 148-169 59-80 (107) 29 1jmt_A Splicing factor U2AF 35 49.5 15 0.00043 26.5 3.0 23 148-170 69-91 (104) 30 2dnp_A RNA-binding protein 14; 49.3 16 0.00046 25.2 3.0 22 149-170 45-66 (90) 31 2dnz_A Probable RNA-binding pr 49.3 16 0.00046 25.2 3.0 21 149-169 49-69 (95) 32 1x4a_A Splicing factor, argini 49.0 16 0.00045 26.1 3.0 21 149-169 63-83 (109) 33 3s8s_A Histone-lysine N-methyl 48.9 16 0.00044 26.1 3.0 22 149-170 50-71 (110) 34 2cqp_A RNA-binding protein 12; 48.6 13 0.00038 25.7 2.5 21 149-169 59-79 (98) 35 2diu_A KIAA0430 protein; struc 48.6 13 0.00036 27.2 2.4 23 148-170 47-69 (96) 36 2m9k_A RNA-binding protein wit 48.6 17 0.00048 25.0 3.0 22 148-169 44-65 (93) 37 2cpi_A CCR4-NOT transcription 48.5 16 0.00045 25.9 3.0 21 149-169 65-85 (111) 38 2dit_A HIV TAT specific factor 48.3 11 0.00032 27.1 2.2 21 149-169 66-86 (112) 39 2cq3_A RNA-binding protein 9; 48.3 17 0.00048 25.6 3.0 21 149-169 57-77 (103) 40 2cq1_A PTB-like protein L; RRM 48.2 16 0.00044 25.8 2.8 22 149-170 53-74 (101) 41 2mjn_A Nucleolysin TIA-1 isofo 48.1 11 0.00032 28.2 2.2 60 115-177 112-178 (186) 42 2mgz_A Protein ASD-1, isoform 47.9 18 0.0005 25.1 3.0 21 149-169 46-66 (94) 43 3s6e_A RNA-binding protein 39; 47.8 15 0.00043 26.7 2.8 28 148-177 56-83 (114) 44 2do4_A Squamous cell carcinoma 47.7 17 0.00048 25.4 3.0 22 148-169 59-80 (100) 45 2d9p_A Polyadenylate-binding p 47.7 17 0.00048 25.5 3.0 22 149-170 57-78 (103) 46 2ad9_A Polypyrimidine tract-bi 47.6 20 0.00056 26.8 3.5 29 149-177 69-97 (119) 47 1x5p_A Negative elongation fac 47.6 14 0.00039 26.0 2.4 21 149-169 51-71 (97) 48 2cqi_A Nucleolysin TIAR; RNA r 47.5 17 0.00048 25.7 3.0 21 149-169 57-77 (103) 49 2dgx_A KIAA0430 protein; RRM d 47.2 18 0.0005 25.3 3.0 20 150-169 55-74 (96) 50 3bs9_A Nucleolysin TIA-1 isofo 47.1 18 0.00052 24.5 3.0 21 149-169 50-70 (87) 51 2ywk_A Putative RNA-binding pr 47.1 16 0.00044 25.1 2.6 23 148-170 58-80 (95) 52 3md3_A Nuclear and cytoplasmic 46.9 12 0.00033 27.8 2.1 60 115-176 85-156 (166) 53 2dnq_A RNA-binding protein 4B; 46.8 18 0.00052 25.0 3.0 21 149-169 44-64 (90) 54 2cpd_A Apobec-1 stimulating pr 46.7 18 0.00051 25.4 3.0 21 149-169 53-73 (99) 55 1why_A Hypothetical protein ri 46.7 18 0.00051 25.3 3.0 22 148-169 54-75 (97) 56 1nu4_A U1A RNA binding domain; 46.6 18 0.00052 25.1 3.0 21 149-169 53-73 (97) 57 1x5s_A Cold-inducible RNA-bind 46.5 17 0.00049 25.4 2.8 22 149-170 56-77 (102) 58 3r27_A HnRNP L, heterogeneous 46.5 21 0.00059 25.4 3.3 21 149-169 59-79 (100) 59 2mpu_A RBP1; RNA recognition m 46.0 19 0.00054 24.7 3.0 21 149-169 52-72 (92) 60 2la6_A RNA-binding protein FUS 45.9 19 0.00052 25.2 2.9 21 149-169 65-85 (99) 61 4a8x_A RNA-binding protein wit 45.6 20 0.00056 24.2 3.0 21 149-169 49-69 (88) 62 2lkz_A RNA-binding protein 5; 45.6 16 0.00045 25.3 2.5 21 149-169 55-75 (95) 63 2e5j_A Methenyltetrahydrofolat 45.6 18 0.00052 25.2 2.8 21 149-169 58-78 (97) 64 2cqd_A RNA-binding region cont 45.5 60 0.0017 23.2 5.7 20 149-168 61-80 (116) 65 2dgu_A Heterogeneous nuclear r 45.3 19 0.00055 25.5 3.0 22 149-170 47-68 (103) 66 2cpj_A Non-POU domain-containi 45.1 15 0.00043 25.8 2.4 22 148-169 52-73 (99) 67 1x4h_A RNA-binding protein 28; 44.8 20 0.00056 25.4 3.0 20 149-168 59-78 (111) 68 2la4_A Nuclear and cytoplasmic 44.3 20 0.00055 25.2 2.8 21 149-169 65-85 (101) 69 1x4f_A Matrin 3; structural ge 44.0 21 0.0006 25.7 3.0 22 149-170 64-85 (112) 70 4h75_A Spindlin-1; tudor domai 43.5 10 0.00029 34.1 1.5 15 142-156 211-225 (238) 71 2fc9_A NCL protein; structure 43.3 16 0.00046 25.6 2.3 22 148-169 54-75 (101) 72 3n7c_A ABR034WP; nuclear pore 43.3 25 0.00072 27.6 3.6 37 144-180 92-128 (130) 73 1x4c_A Splicing factor, argini 43.2 16 0.00045 26.1 2.3 21 148-168 51-71 (108) 74 2cpf_A RNA binding motif prote 43.0 17 0.00047 25.2 2.3 21 149-169 52-72 (98) 75 2x1f_A MRNA 3'-END-processing 42.9 23 0.00064 24.7 3.0 21 149-169 46-66 (96) 76 4mzg_B Spindlin-1; WNT signal, 42.5 11 0.00032 33.6 1.6 16 141-156 194-209 (222) 77 1whx_A Hypothetical protein ri 42.5 23 0.00065 25.4 3.0 22 148-169 47-68 (111) 78 2dhg_A TRNA selenocysteine ass 42.4 19 0.00053 25.3 2.5 20 149-168 53-72 (104) 79 1x5o_A RNA binding motif, sing 42.3 23 0.00066 25.4 3.0 21 149-169 68-88 (114) 80 1p27_B RNA-binding protein 8A; 42.1 24 0.00067 24.9 3.0 21 149-169 67-87 (106) 81 2krb_A Eukaryotic translation 41.8 11 0.00032 25.1 1.2 20 149-168 49-68 (81) 82 4fxv_A ELAV-like protein 1; RN 41.7 24 0.00067 24.9 3.0 21 149-169 63-83 (99) 83 1x4g_A Nucleolysin TIAR; struc 41.6 24 0.00067 25.3 3.0 23 148-170 62-84 (109) 84 2cqb_A Peptidyl-prolyl CIS-tra 41.6 20 0.00055 25.1 2.5 21 149-169 56-76 (102) 85 2do0_A HnRNP M, heterogeneous 41.6 24 0.00067 25.3 3.0 21 149-169 58-78 (114) 86 1x5u_A Splicing factor 3B subu 41.4 18 0.00051 25.5 2.3 20 149-168 59-78 (105) 87 1whw_A Hypothetical protein ri 41.3 20 0.00056 25.0 2.4 22 148-169 51-72 (99) 88 1l3k_A Heterogeneous nuclear r 41.2 99 0.0028 23.5 6.6 53 114-166 10-74 (196) 89 2e44_A Insulin-like growth fac 41.1 25 0.00071 24.4 3.0 22 148-169 55-76 (96) 90 2cpz_A CUG triplet repeat RNA- 41.1 23 0.00065 25.4 2.8 21 149-169 69-89 (115) 91 1x5t_A Splicing factor 3B subu 40.8 16 0.00045 25.3 1.9 21 149-169 50-70 (96) 92 2e5i_A Heterogeneous nuclear r 40.7 24 0.00068 26.1 3.0 21 149-169 64-84 (124) 93 2xnq_A Nuclear polyadenylated 40.5 25 0.00072 24.9 3.0 22 148-169 58-79 (97) 94 2dis_A Unnamed protein product 40.5 13 0.00037 26.2 1.4 20 149-168 54-73 (109) 95 1fjc_A Nucleolin RBD2, protein 40.4 21 0.00059 24.8 2.4 21 149-169 55-75 (96) 96 3ulh_A THO complex subunit 4; 40.3 26 0.00073 24.6 3.0 22 149-170 72-93 (107) 97 2cq2_A Hypothetical protein LO 40.2 20 0.00057 26.2 2.4 21 149-169 65-85 (114) 98 2div_A TRNA selenocysteine ass 40.2 16 0.00046 25.3 1.8 56 114-169 6-74 (99) 99 2cq0_A Eukaryotic translation 39.7 21 0.00061 25.0 2.4 21 149-169 59-79 (103) 100 2mqm_A Protein HNRNPL; RRM, RN 39.7 26 0.00073 25.5 3.0 21 149-169 57-77 (118) 101 2hzc_A Splicing factor U2AF 65 39.6 21 0.00059 23.8 2.3 20 148-168 54-73 (87) 102 2mjn_A Nucleolysin TIA-1 isofo 39.4 14 0.0004 27.7 1.5 27 149-177 50-76 (186) 103 1wf1_A RNA-binding protein RAL 39.2 21 0.00059 25.6 2.4 22 148-169 63-84 (110) 104 3nmr_A Cugbp ELAV-like family 39.2 26 0.00073 26.4 3.0 55 116-170 94-159 (175) 105 1iqt_A AUF1, heterogeneous nuc 39.0 17 0.00047 23.8 1.7 18 149-166 43-60 (75) 106 2dgo_A Cytotoxic granule-assoc 38.2 23 0.00065 25.4 2.4 21 149-169 59-79 (115) 107 4iuf_A TDP-43, TAR DNA-binding 38.2 23 0.00065 23.3 2.3 17 149-165 45-61 (77) 108 4f25_A Polyadenylate-binding p 38.0 30 0.00084 24.7 3.0 22 149-170 47-68 (115) 109 1b7f_A Protein (SXL-lethal pro 37.8 28 0.00079 26.0 3.0 55 116-170 88-154 (168) 110 2d9o_A DNAJ (HSP40) homolog, s 37.6 27 0.00077 25.0 2.8 18 148-165 55-72 (100) 111 3zzy_A Polypyrimidine tract-bi 37.5 29 0.00083 25.8 3.0 20 150-169 69-88 (130) 112 2dnm_A SRP46 splicing factor; 36.9 19 0.00054 25.3 1.8 21 149-169 57-77 (103) 113 2jrs_A RNA-binding protein 39; 36.8 32 0.00089 24.9 3.0 21 149-169 70-90 (108) 114 2ec1_A Nucleoporin 50 kDa; ran 36.7 46 0.0013 26.1 4.1 25 145-169 97-121 (125) 115 2lxi_A RNA-binding protein 10; 36.4 20 0.00056 24.4 1.8 21 148-168 45-65 (91) 116 2adc_A Polypyrimidine tract-bi 36.1 29 0.00082 27.6 3.0 54 117-170 151-212 (229) 117 2ytc_A PRE-mRNA-splicing facto 35.7 30 0.00086 23.3 2.6 19 148-166 49-67 (85) 118 3nmr_A Cugbp ELAV-like family 35.7 32 0.00089 25.9 3.0 21 149-169 49-69 (175) 119 1p1t_A Cleavage stimulation fa 35.7 24 0.00068 24.8 2.2 21 149-169 52-72 (104) 120 3lqv_A PRE-mRNA branch site pr 35.6 33 0.00094 24.6 3.0 21 149-169 49-69 (115) 121 3ex7_B RNA-binding protein 8A; 35.2 33 0.00094 25.1 3.0 21 149-169 66-86 (126) 122 2jvo_A Nucleolar protein 3; nu 35.1 32 0.0009 25.1 2.8 56 115-170 29-88 (108) 123 1oo0_B CG8781-PA, drosophila Y 35.0 35 0.00098 24.3 3.0 22 149-170 70-91 (110) 124 1fje_B Nucleolin RBD12, protei 34.8 31 0.00088 26.2 2.8 56 115-170 97-159 (175) 125 2e5g_A U6 snRNA-specific termi 34.6 27 0.00077 24.3 2.3 20 148-167 46-65 (94) 126 4lir_A Nucleoporin NUP53; PF05 34.0 24 0.00068 27.7 2.1 61 115-178 22-87 (117) 127 2mss_A Protein (musashi1); RNA 33.9 29 0.00081 22.6 2.2 17 149-165 43-59 (75) 128 2dnl_A Cytoplasmic polyadenyla 33.7 23 0.00064 25.3 1.8 21 148-168 53-73 (114) 129 1sjq_A Polypyrimidine tract-bi 33.6 38 0.0011 24.2 3.0 21 148-168 53-73 (105) 130 2kxn_B Transformer-2 protein h 33.5 37 0.001 25.6 3.0 21 149-169 90-110 (129) 131 4cq1_A Polypyrimidine tract-bi 33.4 35 0.00099 26.4 3.0 22 149-170 158-179 (196) 132 2bz2_A Negative elongation fac 33.4 1.7E+02 0.0047 21.7 7.2 22 149-170 75-96 (121) 133 2kt5_A RNA and export factor-b 33.3 37 0.0011 24.8 3.0 22 148-169 77-98 (124) 134 2err_A Ataxin-2-binding protei 33.2 30 0.00085 25.0 2.4 21 149-169 71-91 (109) 135 2fy1_A RNA-binding motif prote 33.0 26 0.00074 25.7 2.1 22 148-169 49-70 (116) 136 2ku7_A MLL1 PHD3-CYP33 RRM chi 32.6 30 0.00084 25.3 2.3 22 148-169 106-127 (140) 137 2mql_A Protein HNRNPL; RRM, RN 32.4 19 0.00053 25.5 1.2 21 149-169 51-71 (105) 138 2a3j_A U1 small nuclear ribonu 32.4 29 0.00082 25.8 2.3 23 148-170 73-95 (127) 139 2hgm_A HNRPF protein, heteroge 32.3 13 0.00037 28.2 0.3 18 149-166 86-103 (126) 140 3vaj_A Splicing factor U2AF 65 32.2 28 0.00078 26.2 2.1 53 117-169 96-160 (174) 141 1wg5_A Heterogeneous nuclear r 32.0 31 0.00088 24.3 2.3 18 149-166 59-76 (104) 142 3md3_A Nuclear and cytoplasmic 32.0 40 0.0011 24.8 3.0 23 148-170 42-64 (166) 143 2i2y_A Fusion protein consists 31.9 40 0.0011 25.1 3.0 57 114-170 70-133 (150) 144 2cpx_A Hypothetical protein FL 31.8 29 0.00083 24.9 2.1 22 148-169 68-89 (115) 145 2dgw_A Probable RNA-binding pr 31.8 35 0.001 23.4 2.5 17 149-165 52-68 (91) 146 4qu7_A GRSF-1, G-rich sequence 31.7 31 0.00088 23.3 2.1 16 149-164 43-58 (81) 147 2qfj_A FBP-interacting repress 31.5 39 0.0011 26.2 3.0 27 149-177 72-98 (216) 148 2dgs_A DAZ-associated protein 31.0 39 0.0011 23.4 2.6 17 149-165 54-70 (99) 149 1wi8_A EIF-4B, eukaryotic tran 30.6 34 0.00097 24.0 2.3 16 149-164 59-74 (104) 150 2lcw_A RNA-binding protein FUS 30.4 29 0.00082 25.2 1.9 20 149-168 59-78 (116) 151 1uaw_A Mouse-musashi-1; RNP-ty 30.4 24 0.00067 23.2 1.3 17 149-165 44-60 (77) 152 3ucg_A Polyadenylate-binding p 30.3 31 0.00087 23.5 1.9 20 148-168 49-68 (89) 153 1b7f_A Protein (SXL-lethal pro 30.3 44 0.0012 24.9 3.0 21 149-169 47-67 (168) 154 1u6f_A Tcubp1, RNA-binding pro 30.3 36 0.001 25.3 2.4 20 149-168 86-105 (139) 155 1h2v_Z 20 kDa nuclear CAP bind 30.0 36 0.001 25.8 2.4 22 148-169 82-103 (156) 156 2jvr_A Nucleolar protein 3; RN 29.9 37 0.0011 24.8 2.4 27 149-177 69-95 (111) 157 3d2w_A TAR DNA-binding protein 29.9 37 0.001 23.9 2.3 48 117-165 11-66 (89) 158 1fj7_A Nucleolin RBD1, protein 29.6 43 0.0012 23.3 2.6 17 149-165 60-76 (101) 159 2mxy_A Heterogeneous nuclear r 29.5 25 0.00071 24.9 1.4 21 148-168 50-70 (105) 160 2dnn_A RNA-binding protein 12; 29.4 40 0.0011 24.1 2.5 18 149-166 58-75 (109) 161 2mkc_A U2 snRNP component IST3 29.1 37 0.001 24.4 2.3 21 149-169 54-74 (118) 162 2j76_E EIF-4B, EIF4B, eukaryot 29.1 38 0.0011 23.9 2.3 19 149-168 63-81 (100) 163 4cq1_A Polypyrimidine tract-bi 29.1 46 0.0013 25.8 3.0 23 148-170 41-63 (196) 164 3s7r_A Heterogeneous nuclear r 28.9 40 0.0011 22.7 2.3 17 149-165 55-71 (87) 165 2cqg_A TDP-43, TAR DNA-binding 28.8 45 0.0013 23.4 2.6 17 149-165 59-75 (103) 166 3dxb_A Thioredoxin N-terminall 28.8 45 0.0013 26.8 3.0 26 150-177 178-203 (222) 167 3u1l_A PRE-mRNA-splicing facto 28.7 32 0.00092 29.2 2.2 23 149-171 181-203 (240) 168 2dng_A Eukaryotic translation 28.5 39 0.0011 23.7 2.3 16 149-164 58-73 (103) 169 2nlw_A Eukaryotic translation 28.5 22 0.00064 25.1 1.0 22 148-169 62-83 (105) 170 1fxl_A Paraneoplastic encephal 28.4 50 0.0014 24.3 3.0 21 149-169 46-66 (167) 171 4f02_A Polyadenylate-binding p 28.2 48 0.0014 25.8 3.0 54 117-170 103-166 (213) 172 2kvi_A Nuclear polyadenylated 28.1 41 0.0012 23.5 2.3 18 149-166 47-64 (96) 173 1sjr_A Polypyrimidine tract-bi 27.9 37 0.0011 27.1 2.3 21 149-169 86-106 (164) 174 2cpy_A RNA-binding protein 12; 27.9 38 0.0011 24.3 2.1 18 149-167 59-76 (114) 175 4h75_A Spindlin-1; tudor domai 27.8 21 0.0006 32.1 0.9 15 142-156 134-148 (238) 176 2m88_A Protein NRD1; NRD1 comp 27.6 56 0.0016 26.8 3.3 23 148-170 70-92 (194) 177 2rs2_A Musashi-1, RNA-binding 27.5 47 0.0013 23.9 2.6 18 149-166 69-86 (109) 178 3egn_A RNA-binding protein 40; 27.3 51 0.0014 24.5 2.8 21 149-169 94-114 (143) 179 2khc_A Testis-specific RNP-typ 27.3 29 0.00082 24.8 1.4 20 149-168 84-103 (118) 180 1ufw_A Synaptojanin 2; RNP dom 26.5 35 0.00098 24.7 1.7 19 150-169 61-79 (95) 181 4d0i_1 Extracellular hemoglobi 26.5 17 0.00047 33.4 0.0 19 1-19 2-21 (288) 182 2dh8_A DAZ-associated protein 25.7 33 0.00092 24.2 1.4 16 149-164 60-75 (105) 183 2lmi_A GRSF-1, G-rich sequence 25.7 45 0.0013 23.7 2.2 17 149-165 57-73 (107) 184 1wwh_A Nucleoporin 35, nucleop 25.7 41 0.0011 26.6 2.1 70 114-189 21-95 (119) 185 4f02_A Polyadenylate-binding p 25.6 57 0.0016 25.4 3.0 27 149-177 59-85 (213) 186 2db1_A Heterogeneous nuclear r 25.4 46 0.0013 24.0 2.2 17 149-165 63-79 (118) 187 1wf0_A TDP-43, TAR DNA-binding 25.4 38 0.0011 23.1 1.7 16 149-164 44-59 (88) 188 2dnr_A Synaptojanin-1; RRM dom 25.4 40 0.0011 24.2 1.9 15 150-164 52-66 (91) 189 1wez_A HnRNP H', FTP-3, hetero 25.1 38 0.0011 23.9 1.7 16 149-164 57-72 (102) 190 1wey_A Calcipressin 1; structu 25.1 20 0.00057 27.3 0.3 21 150-170 49-69 (104) 191 4qpt_A Heterogenous nuclear ri 24.9 56 0.0016 25.9 2.8 55 116-170 125-191 (215) 192 4yud_A RNA-binding protein 39; 24.8 35 0.001 23.4 1.4 20 149-169 54-73 (92) 193 2adc_A Polypyrimidine tract-bi 24.7 61 0.0017 25.7 3.0 28 148-177 73-100 (229) 194 1l3k_A Heterogeneous nuclear r 24.4 56 0.0016 25.0 2.6 52 115-166 102-165 (196) 195 4c0o_C Serine/arginine-rich sp 23.9 37 0.0011 24.9 1.5 20 148-167 51-70 (125) 196 2dha_A FLJ20171 protein; RRM d 23.6 43 0.0012 24.4 1.8 27 149-178 70-96 (123) 197 2mkh_A Cytoplasmic polyadenyla 23.4 49 0.0014 25.9 2.2 52 115-166 130-193 (212) 198 2mki_A Cytoplasmic polyadenyla 23.2 52 0.0015 25.4 2.3 59 115-176 118-189 (203) 199 1s79_A Lupus LA protein; RRM, 23.1 56 0.0016 23.0 2.3 18 149-166 54-71 (103) 200 1x4b_A Heterogeneous nuclear r 23.0 53 0.0015 23.5 2.1 18 149-166 71-88 (116) 201 3ctr_A Poly(A)-specific ribonu 23.0 30 0.00085 25.1 0.8 53 116-169 4-61 (101) 202 2f3j_A RNA and export factor b 22.9 53 0.0015 26.3 2.3 21 149-169 131-151 (177) 203 2cq4_A RNA binding motif prote 22.9 47 0.0013 23.7 1.9 20 149-169 69-88 (114) 204 3smz_A Protein raver-1, ribonu 22.9 63 0.0018 26.4 2.8 56 115-170 182-249 (284) 205 2lea_A Serine/arginine-rich sp 22.8 37 0.001 25.7 1.3 20 149-168 91-110 (135) 206 2kn4_A Immunoglobulin G-bindin 22.6 1.1E+02 0.003 22.9 3.9 30 149-179 15-44 (158) 207 4pkd_B U1A,SNRNP70, U1 small n 22.4 69 0.002 26.1 3.0 21 149-169 53-73 (279) 208 1rk8_A CG8781-PA, CG8781-PA pr 22.3 73 0.0021 24.5 3.0 62 113-176 68-141 (165) 209 1wel_A RNA-binding protein 12; 22.0 48 0.0013 24.1 1.7 17 149-165 69-85 (124) 210 2cjk_A Nuclear polyadenylated 21.7 69 0.0019 23.8 2.6 50 116-165 86-147 (167) 211 3pgw_A U1-A; protein-RNA compl 21.7 62 0.0018 26.2 2.5 24 147-170 244-267 (282) 212 2jwn_A Embryonic polyadenylate 21.4 62 0.0018 23.5 2.3 16 149-164 80-95 (124) 213 1rrp_B Nuclear pore complex pr 21.3 89 0.0025 24.4 3.3 26 144-169 105-130 (134) 214 3n9u_C Cleavage and polyadenyl 21.2 61 0.0017 25.2 2.3 21 149-169 101-121 (156) 215 1ymm_C MBP peptide, HLA class 21.2 43 0.0012 20.2 1.1 9 146-154 2-10 (23) 216 2yh0_A Splicing factor U2AF 65 21.1 51 0.0014 25.5 1.8 55 115-169 112-178 (198) 217 4qpt_A Heterogenous nuclear ri 21.0 79 0.0022 25.0 3.0 23 147-169 45-67 (215) 218 4pkd_B U1A,SNRNP70, U1 small n 20.1 62 0.0017 26.4 2.2 54 117-170 166-231 (279) 219 2g6t_A Uncharacterized protein 20.1 46 0.0013 31.0 1.5 19 144-162 183-201 (306)No 1>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} SCOP: d.58.7.1 PDB: 2ek6_A Probab=76.68 E-value=12 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.+||..|...+.. T Consensus 59 ~afV~f~~~~~a~~A~~~l~g 79 (95) T 2ek1_A 59 EAMVAFESRDEATAAVIDLND 79 (95) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999887654No 2>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=72.71 E-value=8.9 Score=27.05 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.+||..|...+... T Consensus 56 ~afV~f~~~~~a~~A~~~l~g~ 77 (102) T 2fc8_A 56 FGFVDFNSEEDAKAAKEAMEDG 77 (102) T ss_dssp EEEEECSSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHcCCC Confidence 6799999999999998876543No 3>2rt3_A Negative regulator of differentiation 1; NRD1, RNA-binding, RNA binding protein; NMR {Schizosaccharomyces pombe} Probab=63.15 E-value=17 Score=25.44 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=34.8 Q ss_pred ccccceeEEEec--CCCChhHHHHHhhhhccCC----CCCCeEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 113 AAEQRTAIYVLN--KQTDIGDLAQKFNAARQNS----NQRPEVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 113 ~~EeKT~IYVL~--Kq~d~~dla~~l~~~~~~~----~~KPEV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) ..+..+.|||-+ ...+..||...+..--.-. ..+--.-||.|.+.++|..|...+.. T Consensus 14 ~~~~~~~l~V~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~g~afV~f~~~~~A~~A~~~l~g 76 (97) T 2rt3_A 14 QSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQELPL 76 (97) T ss_dssp CCCCSSCEEEECCCTTCCHHHHHHHHTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHGGG T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEECCHHHHHHHHHHhcC Confidence 345667788855 4444556665444221100 01133679999999999999887764No 4>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=60.54 E-value=46 Score=23.58 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 67 ~afV~f~~~~~a~~A~~~l~g 87 (113) T 2cpe_A 67 DATVSYEDPPTAKAAVEWFDG 87 (113) T ss_dssp EEEEEBSSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999998877654No 5>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=59.28 E-value=11 Score=25.33 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.+||..|.+.+... T Consensus 49 ~afV~f~~~~~a~~A~~~l~g~ 70 (85) T 1x4e_A 49 YGFVDFDSPSAAQKAVTALKAS 70 (85) T ss_dssp EEEEEESCHHHHHHHHHHHHHH T ss_pred eEEEEECCHHHHHHHHHHhcCC Confidence 6799999999999999887664No 6>2mtg_A LA-related protein 6; LARP6, RRM, acheron, LARP, RNA binding; NMR {Homo sapiens} Probab=57.12 E-value=11 Score=27.99 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.1 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|.+|...+... T Consensus 81 g~aFV~f~~~e~A~~Ai~~lng~ 103 (119) T 2mtg_A 81 ECAIVEFEEVEAAIKAHEFMITE 103 (119) T ss_dssp CEEEEEESCHHHHHHHHHHHHHH T ss_pred cEEEEEECCHHHHHHHHHHhcCC Confidence 46799999999999999988764No 7>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=56.91 E-value=51 Score=22.62 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=34.8 Q ss_pred ccceeEEEec--CCCChhHHHHHhhhhccCCCCC----CeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLN--KQTDIGDLAQKFNAARQNSNQR----PEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 115 EeKT~IYVL~--Kq~d~~dla~~l~~~~~~~~~K----PEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) +..+.|||-+ ...+..||-..+..--.-..-+ --.-||.|.+.++|..|...+... T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 67 (93) T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGK 67 (93) T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTT T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHhCCC Confidence 4556788855 4444566666554332111111 336799999999999998877653No 8>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Probab=55.71 E-value=79 Score=24.48 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=38.7 Q ss_pred cccceeEEEecC--CCChhHHHHHhhhh---------ccCCCCCCe-EEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 114 AEQRTAIYVLNK--QTDIGDLAQKFNAA---------RQNSNQRPE-VHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 114 ~EeKT~IYVL~K--q~d~~dla~~l~~~---------~~~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) ....+.|||-+- ..+..||...+..- ......++. .-||.|.+.++|..|...+... .|+|. T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~ 195 (216) T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF--DLGGQ 195 (216) T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--BCSSS T ss_pred ccCCceEEEeCCCCCCCHHHHHHHHHhcCCeEEEEeccCCCCCCCCcEEEEEECCHHHHHHHHHHhcCc--eeCCe Confidence 345578999764 44456776654431 111223333 5699999999999999888643 24553No 9>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Probab=55.33 E-value=11 Score=26.75 Aligned_cols=53 Identities=23% Similarity=0.188 Sum_probs=30.8 Q ss_pred ceeEEEec--CCCChhHHHHHhhhhcc---CC-CCCCeEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 117 RTAIYVLN--KQTDIGDLAQKFNAARQ---NS-NQRPEVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 117 KT~IYVL~--Kq~d~~dla~~l~~~~~---~~-~~KPEV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .+-|||-+ ...+..||-..+..--+ -. ...--.-||.|.+.+||..|...+.. T Consensus 7 ~~~l~V~nL~~~~te~~L~~~F~~~G~i~~~~i~~~~g~afV~f~~~~~A~~Ai~~lng 65 (89) T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNN 65 (89) T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCEEEEEECCHHHHHHHHHHhCC Confidence 35677755 33334455543332211 00 11223679999999999999887754No 10>4fxw_A Splicing factor U2AF 65 kDa subunit; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} SCOP: d.58.7.1 PDB: 1o0p_A 1opi_A 2m0g_B 2m52_A 3v4m_A* 4z2x_A Probab=54.80 E-value=10 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=19.5 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||+|.+.++|..|.+.+... T Consensus 61 g~afV~f~~~~~A~~A~~~l~g~ 83 (106) T 4fxw_A 61 GKIFVEFTSVFDCQKAMQGLTGR 83 (106) T ss_dssp TEEEEECSSHHHHHHHHHHHTTC T ss_pred eEEEEEECCHHHHHHHHHHhCCC Confidence 46899999999999999887553No 11>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Probab=54.68 E-value=12 Score=25.22 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 51 ~afV~f~~~~~a~~a~~~l~g 71 (85) T 3mdf_A 51 FAFVEFELAEDAAAAIDNMNE 71 (85) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999887654No 12>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} SCOP: d.58.7.0 PDB: 2peh_A Probab=53.29 E-value=12 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.4 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||+|.+.++|..|...+... T Consensus 57 g~afV~f~~~~~A~~A~~~l~g~ 79 (105) T 2pe8_A 57 VRIFLEFERVESAIKAVVDLNGR 79 (105) T ss_dssp EEEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEEECCHHHHHHHHHHHCCC Confidence 46799999999999999877553No 13>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Probab=52.72 E-value=15 Score=26.10 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=18.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 53 ~afV~f~~~~~A~~A~~~l~~ 73 (104) T 1wex_A 53 QALVEFENIDSAKECVTFAAD 73 (104) T ss_dssp EEEEEESSHHHHHHHHHHHHH T ss_pred EEEEEeCCHHHHHHHHHHhcc Confidence 779999999999999888765No 14>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Probab=52.54 E-value=14 Score=26.06 Aligned_cols=28 Identities=32% Similarity=0.620 Sum_probs=21.9 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) -.-||.|.+.++|..|.+.+... .++|. T Consensus 38 g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 65 (101) T 2hvz_A 38 GFAFVEFEDPRDAEDAVRGLDGK--VICGS 65 (101) T ss_dssp SEEEEECSSHHHHHHHHHHHHHS--CSSSC T ss_pred CEEEEEECCHHHHHHHHHHcCCC--EECCE Confidence 37799999999999999887763 24554No 15>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Probab=52.13 E-value=13 Score=25.95 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 56 ~afV~f~~~~~A~~A~~~l~g 76 (100) T 3ns6_A 56 FLFVECGSMNDAKKIIKSFHG 76 (100) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhcC Confidence 679999999999999887655No 16>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Probab=51.63 E-value=8.7 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=20.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCcc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGSS 178 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGsS 178 (229) .-||.|.+.++|..|.+.+... .++|.. T Consensus 47 ~afV~f~~~~~a~~A~~~l~g~--~~~g~~ 74 (90) T 3p5t_L 47 FALVGVGSEASSKKLMDLLPKR--ELHGQN 74 (90) T ss_dssp EEEECC-CHHHHHHHHHHGGGS--CSSSCC T ss_pred EEEEEeCCHHHHHHHHHHcCCC--ccCCcE Confidence 5699999999999988776554 345543No 17>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Probab=51.58 E-value=12 Score=25.81 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 42 ~afV~f~~~~~A~~A~~~l~g 62 (88) T 1wg1_A 42 TAFVTLLNGEQAQNAIQMFHQ 62 (88) T ss_dssp EEEECCSCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHHcC Confidence 569999999999999887654No 18>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 PDB: 2dgq_A Probab=51.17 E-value=14 Score=26.13 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 57 ~afV~f~~~~~a~~A~~~l~g 77 (106) T 2dgp_A 57 CAFLTYCERESALKAQSALHE 77 (106) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHHcC Confidence 789999999999999877654No 19>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.0 PDB: 2dh9_A Probab=51.06 E-value=14 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.4 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 50 ~afV~f~~~~~a~~a~~~l~g~ 71 (92) T 2dgv_A 50 CGVVKFESPEVAERACRMMNGM 71 (92) T ss_dssp EEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEeCCHHHHHHHHHHhCCC Confidence 5799999999999998876543No 20>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=50.99 E-value=13 Score=26.32 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|..|.+.+... T Consensus 53 g~afV~f~~~~~A~~A~~~l~~~ 75 (102) T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTT 75 (102) T ss_dssp SCEEEEESSHHHHHHHHHHHHHS T ss_pred CEEEEEeCCHHHHHHHHHHHhcC Confidence 37799999999999999988653No 21>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Probab=50.78 E-value=15 Score=24.53 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 45 ~afV~f~~~~~a~~a~~~l~g 65 (83) T 3md1_A 45 YGFVSFTSQDDAQNAMDSMQG 65 (83) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999877654No 22>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=50.59 E-value=12 Score=25.69 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.5 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 60 ~afV~f~~~~~a~~a~~~l~g 80 (94) T 2e5h_A 60 VAFILFLDKDSAQNCTRAINN 80 (94) T ss_dssp CEEEEESCHHHHHHHHHHTTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 469999999999998876654No 23>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 4ed5_A 4egl_A* 1d8z_A 1d9a_A 3hi9_A Probab=50.53 E-value=11 Score=27.90 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=37.4 Q ss_pred cceeEEEec--CCCChhHHHHHhhhhcc---------CCCCCC-eEEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 116 QRTAIYVLN--KQTDIGDLAQKFNAARQ---------NSNQRP-EVHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 116 eKT~IYVL~--Kq~d~~dla~~l~~~~~---------~~~~KP-EV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) ..+.|||-+ ...+..||...+..--. ....++ -.-||.|.+.++|..|...+... .++|. T Consensus 87 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 158 (167) T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ--KPSGA 158 (167) T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC--CCTTC T ss_pred CCCcEEEeCCCcccCHHHHHHHHHhcCCEEEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhcCC--ccCCC Confidence 346688865 44455677665443211 112333 24699999999999999988765 35553No 24>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A Probab=50.26 E-value=14 Score=26.95 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=18.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 73 ~afV~f~~~~~A~~Ai~~l~g~ 94 (118) T 3ue2_A 73 KIFVEFSIASETHKAIQALNGR 94 (118) T ss_dssp EEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHhCCC Confidence 5799999999999998877543No 25>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 PDB: 2dnk_A 2dno_A Probab=50.22 E-value=15 Score=25.95 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 58 ~afV~f~~~~~A~~A~~~l~g 78 (105) T 2dnh_A 58 CAFVKFSSHTEAQAAIHALHG 78 (105) T ss_dssp EEEEEESSHHHHHHHHHHHSS T ss_pred EEEEEeCCHHHHHHHHHHhcC Confidence 579999999999998876644No 26>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=50.17 E-value=15 Score=25.32 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 59 ~afV~f~~~~~A~~a~~~l~g 79 (95) T 2cqc_A 59 FAFVYFENVDDAKEAKERANG 79 (95) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHCCC Confidence 679999999999999887654No 27>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=49.96 E-value=15 Score=25.44 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 46 ~afV~f~~~~~a~~A~~~l~g 66 (92) T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDN 66 (92) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred cEEEEECCHHHHHHHHHHhcC Confidence 779999999999999887654No 28>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=49.92 E-value=16 Score=25.75 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.9 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 59 g~afV~f~~~~~a~~A~~~l~g 80 (107) T 2cph_A 59 GFGFVDFITKQDAKKAFNALCH 80 (107) T ss_dssp SEEEEEESSHHHHHHHHHHHHT T ss_pred cEEEEEECCHHHHHHHHHHccC Confidence 3679999999999999888764No 29>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Probab=49.47 E-value=15 Score=26.48 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.3 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||+|.+.++|.+|.+.+... T Consensus 69 G~afV~f~~~~~A~~Ai~~lng~ 91 (104) T 1jmt_A 69 GNVYVKFRREEDAEKAVIDLNNR 91 (104) T ss_dssp EEEEEEESCHHHHHHHHHHHTTC T ss_pred EEEEEEECCHHHHHHHHHHhCCC Confidence 36799999999999998877554No 30>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=49.27 E-value=16 Score=25.23 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|.+.+... T Consensus 45 ~afV~f~~~~~a~~a~~~l~~~ 66 (90) T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGK 66 (90) T ss_dssp CEEEEESCHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHcCCC Confidence 6799999999999998876544No 31>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=49.26 E-value=16 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 49 ~afV~f~~~~~a~~a~~~l~g 69 (95) T 2dnz_A 49 YGFITFSDSECARRALEQLNG 69 (95) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 779999999999998887654No 32>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=49.01 E-value=16 Score=26.13 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 63 ~afV~f~~~~~A~~A~~~l~g 83 (109) T 1x4a_A 63 FAFVEFEDPRDAEDAVYGRDG 83 (109) T ss_dssp CEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 789999999999999887644No 33>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Probab=48.91 E-value=16 Score=26.12 Aligned_cols=22 Identities=9% Similarity=0.190 Sum_probs=18.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|.+.+... T Consensus 50 ~afV~f~~~~~A~~A~~~l~g~ 71 (110) T 3s8s_A 50 LARVLFTSTRGAKETVKNLHLT 71 (110) T ss_dssp EEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHhcCC Confidence 6799999999999998876543No 34>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=48.64 E-value=13 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.4 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 59 ~afV~f~~~~~A~~A~~~l~~ 79 (98) T 2cqp_A 59 EAMVAFESRDEATAAVIDLND 79 (98) T ss_dssp EEEEEESCHHHHHHHHHHTTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999998776543No 35>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=48.59 E-value=13 Score=27.16 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=19.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|.+|.+.+... T Consensus 47 g~aFV~f~~~~~A~~Ai~~lng~ 69 (96) T 2diu_A 47 CSAILRFINQDSAERAQKRMENE 69 (96) T ss_dssp TCEEEEESSHHHHHHHHHHHTTC T ss_pred CEEEEEECCHHHHHHHHHHHCCC Confidence 46899999999999999887654No 36>2m9k_A RNA-binding protein with multiple splicing 2; RBPMS2; NMR {Homo sapiens} Probab=48.56 E-value=17 Score=25.04 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.4 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.|.++|..|...+.. T Consensus 44 g~afV~f~~~~~A~~A~~~l~g 65 (93) T 2m9k_A 44 PVGFVIFDSRAGAEAAKNALNG 65 (93) T ss_dssp CEEEEEESCHHHHHHHHHHHTT T ss_pred CEEEEEECCHHHHHHHHHHHCC Confidence 3679999999999999887644No 37>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=48.55 E-value=16 Score=25.93 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 65 ~afV~f~~~~~A~~A~~~l~g 85 (111) T 2cpi_A 65 SAYVTYIRSEDALRAIQCVNN 85 (111) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhcC Confidence 679999999999999887654No 38>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=48.33 E-value=11 Score=27.11 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||+|.+.++|..|.+.+.. T Consensus 66 ~afV~f~~~~~A~~A~~~l~g 86 (112) T 2dit_A 66 VASVSFRDPEEADYCIQTLDG 86 (112) T ss_dssp EEEEECSCHHHHHHHHHHSTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 579999999999999887654No 39>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=48.26 E-value=17 Score=25.63 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 57 ~afV~f~~~~~A~~a~~~l~~ 77 (103) T 2cq3_A 57 FGFVTFENSADADRAREKLHG 77 (103) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999876644No 40>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=48.21 E-value=16 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...++.. T Consensus 53 ~afV~f~~~~~A~~A~~~l~~~ 74 (101) T 2cq1_A 53 QAFLELATEEAAITMVNYYSAV 74 (101) T ss_dssp EEEEEESSHHHHHHHHHHHHHS T ss_pred EEEEEeCCHHHHHHHHHHHhcC Confidence 6799999999999999988653No 41>2mjn_A Nucleolysin TIA-1 isoform P40; RRM, RNA binding protein; NMR {Homo sapiens} Probab=48.09 E-value=11 Score=28.22 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=36.2 Q ss_pred ccceeEEEec--CCCChhHHHHHhhhhcc-----CCCCCCeEEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 115 EQRTAIYVLN--KQTDIGDLAQKFNAARQ-----NSNQRPEVHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 115 EeKT~IYVL~--Kq~d~~dla~~l~~~~~-----~~~~KPEV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) ...+.|||-+ ...+..||-+.+..--. -... --.-||+|.+.++|..|...+... .++|. T Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~--~~~g~ 178 (186) T 2mjn_A 112 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KGYSFVRFNSHESAAHAIVSVNGT--TIEGH 178 (186) T ss_dssp TTCCEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTC--EETTE T ss_pred CCccEEEEecCCCCCCHHHHHHHHhcCccEEEEEEecC-CCEEEEEeCCHHHHHHHHHHhCCC--EECCe Confidence 4456788855 34445566654432110 0111 246799999999999999888654 34443No 42>2mgz_A Protein ASD-1, isoform A; solution structure, protein-RNA complex, ternary complex, RR recognition motif); NMR {Caenorhabditis elegans} Probab=47.86 E-value=18 Score=25.10 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 46 ~afV~f~~~~~a~~a~~~l~g 66 (94) T 2mgz_A 46 FGFVTMQNPDDADRARAEFNG 66 (94) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 569999999999999887654No 43>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 4j5o_A 4oz1_A* 4oz0_A* 2lq5_A Probab=47.84 E-value=15 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=21.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) -.-||+|.+.++|..|.+.+.... ++|. T Consensus 56 g~afV~f~~~~~A~~A~~~l~g~~--~~gr 83 (114) T 3s6e_A 56 GNVYVKCPSIAAAIAAVNALHGRW--FAGK 83 (114) T ss_dssp CCEEEECSSHHHHHHHHHHHTTCE--ETTE T ss_pred EEEEEEECCHHHHHHHHHHHCCCe--ECCc Confidence 467999999999999998876543 4554No 44>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=47.69 E-value=17 Score=25.36 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.5 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|.+.+.. T Consensus 59 g~afV~f~~~~~a~~a~~~l~~ 80 (100) T 2do4_A 59 GLAYVEYENESQASQAVMKMDG 80 (100) T ss_dssp EEEEEEESSHHHHHHHHHHHTT T ss_pred eEEEEEECCHHHHHHHHHHhCC Confidence 4679999999999999877654No 45>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=47.67 E-value=17 Score=25.51 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=18.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 57 ~afV~f~~~~~a~~a~~~l~g~ 78 (103) T 2d9p_A 57 FGFVCFSSPEEATKAVTEMNGR 78 (103) T ss_dssp EEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHHcCC Confidence 6799999999999998866543No 46>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=47.63 E-value=20 Score=26.81 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=22.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) .=||.|.|.++|..|...++.+--.++|. T Consensus 69 ~afV~f~~~~~A~~Ai~~l~~~~~~~~g~ 97 (119) T 2ad9_A 69 QAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119) T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCBTTB T ss_pred EEEEEECCHHHHHHHHHHhhcCCceeCCC Confidence 67999999999999999886543345554No 47>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=47.56 E-value=14 Score=25.98 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 51 ~afV~f~~~~~a~~A~~~l~g 71 (97) T 1x5p_A 51 CAFVTYEKMESADQAVAELNG 71 (97) T ss_dssp EEEEEESSHHHHHHHHHHTTT T ss_pred EEEEEeCCHHHHHHHHHHhCC Confidence 679999999999998876644No 48>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=47.46 E-value=17 Score=25.67 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 57 ~afV~f~~~~~a~~A~~~l~g 77 (103) T 2cqi_A 57 YCFVEFYEHRDAAAALAAMNG 77 (103) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEEccHHHHHHHHHHhCC Confidence 679999999999999887654No 49>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=47.24 E-value=18 Score=25.27 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.5 Q ss_pred EEEEeCCHHHHHHHHHHHHH Q FBpp0084426 150 HFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 150 ~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -||.|.+.++|..|...+.. T Consensus 55 afV~f~~~~~a~~A~~~l~g 74 (96) T 2dgx_A 55 AVVQMENLQDAIGAVNSLHR 74 (96) T ss_dssp EEEEESSHHHHHHHHHHHTT T ss_pred EEEEeCCHHHHHHHHHHHCC Confidence 99999999999999876654No 50>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} SCOP: d.58.7.0 Probab=47.12 E-value=18 Score=24.46 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 50 ~afV~f~~~~~a~~a~~~l~g 70 (87) T 3bs9_A 50 YGFVSFFNKWDAENAIQQMGG 70 (87) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999877643No 51>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} SCOP: d.58.7.0 Probab=47.07 E-value=16 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=18.8 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|..|.+.+... T Consensus 58 g~afV~f~~~~~a~~a~~~l~g~ 80 (95) T 2ywk_A 58 SFGFVCFKHPESVSYAIALLNGI 80 (95) T ss_dssp EEEEEEESSTHHHHHHHHHHTTC T ss_pred ceEEEEECCHHHHHHHHHHhCCC Confidence 35699999999999998877543No 52>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Probab=46.90 E-value=12 Score=27.80 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=37.8 Q ss_pred ccceeEEEecC--CCChhHHHHHhhhhc---------cCCCCCCe-EEEEEeCCHHHHHHHHHHHHHHhhhcCC Q FBpp0084426 115 EQRTAIYVLNK--QTDIGDLAQKFNAAR---------QNSNQRPE-VHFVKYRTPEDAANAQRAIQSQYDNLGG 176 (229) Q Consensus 115 EeKT~IYVL~K--q~d~~dla~~l~~~~---------~~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~qYD~LGG 176 (229) ...+.|||-+= ..+..+|.+.+..-- .....++. .-||+|.+.++|..|...+.... ++| T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g 156 (166) T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD--LNG 156 (166) T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE--ETT T ss_pred CCCceEEEcCCCccCCHHHHHHHHhcCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCc--cCC Confidence 45677888764 444566665543311 11223333 67999999999999998876543 444No 53>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=46.80 E-value=18 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 44 ~afV~f~~~~~a~~a~~~l~g 64 (90) T 2dnq_A 44 YGFVHIEDKTAAEDAIRNLHH 64 (90) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999998876644No 54>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=46.73 E-value=18 Score=25.37 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 53 ~afV~f~~~~~a~~A~~~l~g 73 (99) T 2cpd_A 53 YAFVHFSNREDAVEAMKALNG 73 (99) T ss_dssp EEEEEESSHHHHHHHHHHHSS T ss_pred eEEEEeCCHHHHHHHHHHhCC Confidence 779999999999999887654No 55>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Probab=46.68 E-value=18 Score=25.25 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=18.8 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 54 g~afV~f~~~~~a~~A~~~l~g 75 (97) T 1why_A 54 SFAYIQYESLDAAQAACAKMRG 75 (97) T ss_dssp CCEEEEESSHHHHHHHHHHHTT T ss_pred CEEEEEeCCHHHHHHHHHHhCC Confidence 3779999999999999887754No 56>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Probab=46.57 E-value=18 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 53 ~afV~f~~~~~A~~A~~~l~g 73 (97) T 1nu4_A 53 QAFVIFKEVSSATNALRSMQG 73 (97) T ss_dssp CEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 579999999999999887754No 57>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=46.50 E-value=17 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|.+.+... T Consensus 56 ~afV~f~~~~~a~~A~~~l~g~ 77 (102) T 1x5s_A 56 FGFVTFENIDDAKDAMMAMNGK 77 (102) T ss_dssp EEEEECSSHHHHHHHHHHHTTC T ss_pred EEEEEECcHHHHHHHHHHcCCC Confidence 7799999999999998876543No 58>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} SCOP: d.58.7.0 Probab=46.48 E-value=21 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .=||.|.+.++|..|...+.. T Consensus 59 ~afV~f~~~~~A~~Ai~~l~g 79 (100) T 3r27_A 59 QALVEFEDVLGACNAVNYAAD 79 (100) T ss_dssp EEEEEESSHHHHHHHHHHHHH T ss_pred EEEEEECCHHHHHHHHHHhcC Confidence 789999999999999988775No 59>2mpu_A RBP1; RNA recognition motif, RRM, RNP1, RNP2, glycine rich protein acid binding protein, RNA binding protein; NMR {Hordeum vulgare} PDB: 4c7q_A Probab=45.96 E-value=19 Score=24.69 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 52 ~afV~f~~~~~a~~a~~~l~g 72 (92) T 2mpu_A 52 FGFVSFSNEQAMQDAIEGMNG 72 (92) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 789999999999998887654No 60>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=45.85 E-value=19 Score=25.22 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 65 ~afV~f~~~~~A~~Ai~~l~g 85 (99) T 2la6_A 65 EATVSFDDPPSAKAAIDWFDG 85 (99) T ss_dssp EEEEEBSSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 579999999999998876644No 61>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} SCOP: d.58.7.0 Probab=45.62 E-value=20 Score=24.23 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 49 ~afV~f~~~~~a~~A~~~l~g 69 (88) T 4a8x_A 49 YAYVEFENPDEAEKALKHMDG 69 (88) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999887654No 62>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Probab=45.62 E-value=16 Score=25.34 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.+||..|.+.+.. T Consensus 55 ~afV~f~~~~~a~~Ai~~l~g 75 (95) T 2lkz_A 55 FAFVQLSSAMDASQLLQILQS 75 (95) T ss_dssp EEEEECSSSHHHHHHHHHHHS T ss_pred EEEEEECCHHHHHHHHHHhhC Confidence 789999999999999887765No 63>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=45.58 E-value=18 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 58 ~afV~f~~~~~a~~A~~~l~g 78 (97) T 2e5j_A 58 RAFLHYPDSAAAQQAVSCLQG 78 (97) T ss_dssp EEEEECSSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999877654No 64>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2ru3_A 2mgz_B 4ch0_S 4ch1_A 4cio_A Probab=45.52 E-value=60 Score=23.23 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=17.2 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.+||..|...+. T Consensus 61 ~afV~f~~~~~a~~A~~~~~ 80 (116) T 2cqd_A 61 YGFVTMADRAAAERACKDPN 80 (116) T ss_dssp EEEEEESSHHHHHHHHTCSS T ss_pred EEEEEeCCHHHHHHHHHhcC Confidence 67999999999999877654No 65>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 PDB: 2dk2_A Probab=45.31 E-value=19 Score=25.48 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=18.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 47 ~afV~f~~~~~a~~a~~~l~g~ 68 (103) T 2dgu_A 47 YAFIHFDERDGAVKAMEEMNGK 68 (103) T ss_dssp CEEEEESSHHHHHHHHHHHTTE T ss_pred EEEEEECCHHHHHHHHHHHCCC Confidence 7799999999999998876543No 66>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rs8_A Probab=45.08 E-value=15 Score=25.75 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.6 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|.+.+.. T Consensus 52 g~afV~f~~~~~A~~A~~~l~~ 73 (99) T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDN 73 (99) T ss_dssp TEEEEECSSSHHHHHHHHHHTT T ss_pred CEEEEEECCHHHHHHHHHHhCC Confidence 3679999999999999887654No 67>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=44.81 E-value=20 Score=25.43 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...+. T Consensus 59 ~afV~f~~~~~A~~a~~~l~ 78 (111) T 1x4h_A 59 CAFAQFMTQEAAQKCLAAAS 78 (111) T ss_dssp EEEEEESSHHHHHHHHHHHC T ss_pred EEEEEECCHHHHHHHHHhhh Confidence 67999999999999988875No 68>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} SCOP: d.58.7.0 Probab=44.25 E-value=20 Score=25.19 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 65 ~afV~f~~~~~A~~a~~~l~g 85 (101) T 2la4_A 65 CCFIKYDTHEQAAVCIVALAN 85 (101) T ss_dssp EEEEECSSHHHHHHHHHHHTT T ss_pred EEEEEeCCHHHHHHHHHHhcC Confidence 579999999999999877654No 69>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=44.04 E-value=21 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|.+.+... T Consensus 64 ~afV~f~~~~~A~~a~~~l~~~ 85 (112) T 1x4f_A 64 QAFIEMETREDAMAMVDHCLKK 85 (112) T ss_dssp EEEEECSSHHHHHHHHHHHHHS T ss_pred EEEEEECCHHHHHHHHHHHhcC Confidence 7899999999999999888754No 70>4h75_A Spindlin-1; tudor domain, H3K4ME3 binding, methylation, gene regulation; HET: M3L NHE; 2.10A {Homo sapiens} PDB: 2ns2_A Probab=43.52 E-value=10 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=12.8 Q ss_pred CCCCCCeEEEEEeCC Q FBpp0084426 142 NSNQRPEVHFVKYRT 156 (229) Q Consensus 142 ~~~~KPEV~FIKYrT 156 (229) +..-||.||||||-. T Consensus 211 qv~akpsvyfIkf~~ 225 (238) T 4h75_A 211 QVEAKPSVYFIKFDD 225 (238) T ss_dssp ECSSSTTEEEEEETT T ss_pred eccCCceEEEEEeCC Confidence 578899999999953No 71>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=43.31 E-value=16 Score=25.59 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.9 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 54 g~afV~f~~~~~a~~A~~~l~~ 75 (101) T 2fc9_A 54 GYAFIEFASFEDAKEALNSCNK 75 (101) T ss_dssp SEEEEECSSHHHHHHHHHHTSS T ss_pred eEEEEEECCHHHHHHHHHHcCC Confidence 3679999999999998876543No 72>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A Probab=43.26 E-value=25 Score=27.59 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=28.1 Q ss_pred CCCCeEEEEEeCCHHHHHHHHHHHHHHhhhcCCcccc Q FBpp0084426 144 NQRPEVHFVKYRTPEDAANAQRAIQSQYDNLGGSSQS 180 (229) Q Consensus 144 ~~KPEV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGsS~~ 180 (229) ..||++|-||++|.|+|..-...|+..=+.|.|--.+ T Consensus 92 d~~~~~~~lrfks~e~a~~f~~~i~e~~~~~~~~~~~ 128 (130) T 3n7c_A 92 DGKLETFIIKVKQKADGRRLVGAVADAQQAMEGHHHH 128 (130) T ss_dssp TTEEEEEEEECSSHHHHHHHHHHHHHHHHHC------ T ss_pred CCccEEEEEEECCHHHHHHHHHHHHHHHHhhcccccc Confidence 3589999999999999999999999888888876544No 73>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Probab=43.18 E-value=16 Score=26.05 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.4 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.-||.|.+.++|..|...+. T Consensus 51 g~afV~f~~~~~a~~A~~~l~ 71 (108) T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLD 71 (108) T ss_dssp TEEEEEESSHHHHHHHHHHSS T ss_pred CEEEEEECCHHHHHHHHHHHC Confidence 467999999999998876554No 74>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Probab=42.95 E-value=17 Score=25.24 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=17.5 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 52 ~afV~f~~~~~a~~a~~~l~g 72 (98) T 2cpf_A 52 FGFVEYKKPEQAQKALKQLQG 72 (98) T ss_dssp EEEEEESSHHHHHHHHHHSTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999998776543No 75>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 PDB: 2x1b_A 2x1a_A 2km8_B Probab=42.93 E-value=23 Score=24.71 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 46 ~afV~f~~~~~A~~A~~~l~g 66 (96) T 2x1f_A 46 YAFIEFRDLESSASAVRNLNG 66 (96) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999877654No 76>4mzg_B Spindlin-1; WNT signal, histone H3, nuclear, gene regulation; HET: M3L; 1.70A {Homo sapiens} PDB: 4mzf_B* 4mzh_A* 5a1h_A 4uy4_A* Probab=42.54 E-value=11 Score=33.57 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=13.4 Q ss_pred cCCCCCCeEEEEEeCC Q FBpp0084426 141 QNSNQRPEVHFVKYRT 156 (229) Q Consensus 141 ~~~~~KPEV~FIKYrT 156 (229) .+.+.||.||||||.. T Consensus 194 ~Qv~~~psvyfIkfe~ 209 (222) T 4mzg_B 194 HQVEAKPSVYFIKFDD 209 (222) T ss_dssp EECTTSTTEEEEEETT T ss_pred EecccCceEEEEEeCC Confidence 3578899999999964No 77>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Probab=42.46 E-value=23 Score=25.44 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=18.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 47 g~afV~f~~~~~A~~A~~~l~g 68 (111) T 1whx_A 47 ITAIVEFLEPLEARKAFRHLAY 68 (111) T ss_dssp SCEEEEESCHHHHHHHHHHHTT T ss_pred CEEEEEECCHHHHHHHHHHhCC Confidence 3789999999999999887754No 78>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=42.37 E-value=19 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.1 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...+. T Consensus 53 ~afV~f~~~~~a~~A~~~l~ 72 (104) T 2dhg_A 53 YGFVKFTDELEQKRALTECQ 72 (104) T ss_dssp EEEEEESCHHHHHHHHHHTT T ss_pred eEEEEECCHHHHHHHHHHhC Confidence 57999999999999887664No 79>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=42.28 E-value=23 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.+||..|.+.+.. T Consensus 68 ~afV~f~~~~~a~~A~~~l~g 88 (114) T 1x5o_A 68 VGFARMESTEKCEAVIGHFNG 88 (114) T ss_dssp EEEEEESCHHHHHHHHHHHBT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999877544No 80>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Probab=42.08 E-value=24 Score=24.87 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 67 ~afV~f~~~~~A~~A~~~l~g 87 (106) T 1p27_B 67 YTLVEYETYKEAQAAMEGLNG 87 (106) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999998887654No 81>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Probab=41.77 E-value=11 Score=25.14 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=16.9 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|.+.+. T Consensus 49 ~afV~f~~~~~A~~A~~~l~ 68 (81) T 2krb_A 49 YIFLEYASPAHAVDAVKNAD 68 (81) T ss_dssp EEEEEESSHHHHHHHHTTSS T ss_pred EEEEEeCCHHHHHHHHHHhc Confidence 78999999999998876543No 82>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} SCOP: d.58.7.0 Probab=41.73 E-value=24 Score=24.89 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 63 ~afV~f~~~~~A~~A~~~l~g 83 (99) T 4fxv_A 63 YGFVNYVTAKDAERAINTLNG 83 (99) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999998876644No 83>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=41.57 E-value=24 Score=25.28 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=18.9 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|..|...+... T Consensus 62 g~afV~f~~~~~A~~A~~~l~g~ 84 (109) T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGT 84 (109) T ss_dssp TEEEEEESSHHHHHHHHHHHTTC T ss_pred CEEEEEECCHHHHHHHHHHhCCC Confidence 35699999999999998877543No 84>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=41.57 E-value=20 Score=25.15 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 56 ~afV~f~~~~~A~~A~~~l~~ 76 (102) T 2cqb_A 56 FAFVEFELAEDAAAAIDNMNE 76 (102) T ss_dssp EEEECCSSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999886644No 85>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=41.56 E-value=24 Score=25.32 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 58 ~afV~f~~~~~a~~a~~~l~g 78 (114) T 2do0_A 58 IGTVTFEQSIEAVQAISMFNG 78 (114) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHHCC Confidence 679999999999999886644No 86>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=41.41 E-value=18 Score=25.49 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.2 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...+. T Consensus 59 ~afV~f~~~~~A~~a~~~l~ 78 (105) T 1x5u_A 59 YGFVEFLSEEDADYAIKIMD 78 (105) T ss_dssp CEEEEESSHHHHHHHHHHSS T ss_pred EEEEEeCCHHHHHHHHHHhC Confidence 67999999999998887654No 87>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Probab=41.27 E-value=20 Score=24.99 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=17.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 51 g~afV~f~~~~~a~~a~~~l~g 72 (99) T 1whw_A 51 GFAFVTFMFPEHAVKAYAEVDG 72 (99) T ss_dssp SEEEEEESSHHHHHHHHHHTTT T ss_pred EEEEEEECCHHHHHHHHHHcCC Confidence 3679999999999988875543No 88>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 4yoe_A 2lyv_A 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Probab=41.21 E-value=99 Score=23.53 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=32.1 Q ss_pred cccceeEEEec--CCCChhHHHHHhhhhcc---------CCCCCCe-EEEEEeCCHHHHHHHHHH Q FBpp0084426 114 AEQRTAIYVLN--KQTDIGDLAQKFNAARQ---------NSNQRPE-VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 114 ~EeKT~IYVL~--Kq~d~~dla~~l~~~~~---------~~~~KPE-V~FIKYrT~eeAa~AQ~~ 166 (229) .++.+-|||-+ ...+..||...+..--. ....++- .-||.|.+.++|..|... T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (196) T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196) T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcceeEEEEeCCHHHHHHHHhh Confidence 45667788844 55555666654443211 0122232 679999999999888654No 89>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=41.08 E-value=25 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.4 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|.+.+.. T Consensus 55 g~afV~f~~~~~a~~A~~~l~g 76 (96) T 2e44_A 55 AVVNVTYSSKDQARQALDKLNG 76 (96) T ss_dssp EEEEEEESSHHHHHHHHHHHTT T ss_pred CEEEEEECCHHHHHHHHHHcCC Confidence 4779999999999999877644No 90>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A 2my7_A 2my8_A 4ljm_B Probab=41.06 E-value=23 Score=25.44 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 69 ~afV~f~~~~~a~~a~~~l~g 89 (115) T 2cpz_A 69 FGFVSYDNPVSAQAAIQSMNG 89 (115) T ss_dssp EEEEECSSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 569999999999999887643No 91>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=40.77 E-value=16 Score=25.25 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 50 ~afV~f~~~~~a~~A~~~l~g 70 (96) T 1x5t_A 50 YAFINFASFDASDAAIEAMNG 70 (96) T ss_dssp EEEEEBSSHHHHHHHHHTTTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999988765543No 92>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.0 Probab=40.72 E-value=24 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 64 ~afV~f~~~~~A~~A~~~l~g 84 (124) T 2e5i_A 64 QAMVEFESVLCAQKAKAALNG 84 (124) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 489999999999999887754No 93>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Probab=40.49 E-value=25 Score=24.88 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=18.2 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 58 g~afV~f~~~~~A~~A~~~l~g 79 (97) T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQ 79 (97) T ss_dssp SEEEEEESSHHHHHHHHHHHTT T ss_pred CEEEEEECCHHHHHHHHHHcCC Confidence 3679999999999998876644No 94>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=40.45 E-value=13 Score=26.22 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.5 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...++ T Consensus 54 ~afV~f~~~~~A~~A~~~l~ 73 (109) T 2dis_A 54 FAFVEYESHRAAAMARRKLM 73 (109) T ss_dssp EEEEEESSHHHHHHHHTTTT T ss_pred EEEEEeCCHHHHHHHHHHHc Confidence 78999999999999887664No 95>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Probab=40.44 E-value=21 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=17.5 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 55 ~afV~f~~~~~a~~A~~~l~~ 75 (96) T 1fjc_A 55 IAYIEFKSEADAEKNLEEKQG 75 (96) T ss_dssp EEEEEESSHHHHHHHHHHTTE T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 579999999999998876543No 96>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} SCOP: d.58.7.1 PDB: 1no8_A Probab=40.25 E-value=26 Score=24.64 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.4 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 72 ~afV~f~~~~~a~~a~~~l~~~ 93 (107) T 3ulh_A 72 TADVHFERKADALKAMKQYNGV 93 (107) T ss_dssp EEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHhCCC Confidence 6799999999999998876543No 97>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=40.19 E-value=20 Score=26.19 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 65 ~afV~f~~~~~A~~Ai~~l~g 85 (114) T 2cq2_A 65 YSFARYRTTEESKRAYVTLNG 85 (114) T ss_dssp CEEEEESSHHHHHHHHHHTTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 789999999999998776543No 98>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=40.19 E-value=16 Score=25.26 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=32.6 Q ss_pred cccceeEEEec--CCCChhHHHHHhhhhcc----------CCCCCCe-EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 114 AEQRTAIYVLN--KQTDIGDLAQKFNAARQ----------NSNQRPE-VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 114 ~EeKT~IYVL~--Kq~d~~dla~~l~~~~~----------~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .++.+.|||-+ ...+..||-..+..--. ....++. .-||.|.+.++|..|.+.+.. T Consensus 6 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 74 (99) T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING 74 (99) T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT T ss_pred CCCCCEEEEeCCCCCcCHHHHHHHHHHhCCcceEEEEEEcCCCCCcCcEEEEEECCHHHHHHHHHHcCC Confidence 35566777755 33344555544432211 0122223 679999999999998866544No 99>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=39.73 E-value=21 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=17.5 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 59 ~afV~f~~~~~a~~A~~~l~g 79 (103) T 2cq0_A 59 FAFISFHRREDAARAIAGVSG 79 (103) T ss_dssp EEEEEESSHHHHHHHHHHTTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 569999999999988876543No 100>2mqm_A Protein HNRNPL; RRM, RNA binding protein; NMR {Rattus norvegicus} Probab=39.66 E-value=26 Score=25.51 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 57 ~afV~f~~~~~A~~Ai~~l~g 77 (118) T 2mqm_A 57 QAMVEFDSVQSAQRAKASLNG 77 (118) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 489999999999999877654No 101>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} SCOP: d.58.7.1 PDB: 1u2f_A Probab=39.61 E-value=21 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.546 Sum_probs=16.3 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.-||.|.+.++|..|. .+. T Consensus 54 g~afV~f~~~~~a~~A~-~l~ 73 (87) T 2hzc_A 54 NFAFLEFRSVDETTQAM-AFD 73 (87) T ss_dssp SEEEEEESSHHHHHHHG-GGT T ss_pred CEEEEEECCHHHHHHHH-HhC Confidence 46699999999999887 543No 102>2mjn_A Nucleolysin TIA-1 isoform P40; RRM, RNA binding protein; NMR {Homo sapiens} Probab=39.41 E-value=14 Score=27.71 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=20.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) .-||.|.+.++|..|...+.... |+|. T Consensus 50 ~afV~F~~~~~A~~A~~~l~~~~--~~g~ 76 (186) T 2mjn_A 50 YGFVSFFNKWDAENAIQQMGGQW--LGGR 76 (186) T ss_dssp EEEEEESSHHHHHHHHHHTTTCE--ETTE T ss_pred eEEEEECCHHHHHHHHHHcCCeE--ECCC Confidence 56999999999999988765443 4553No 103>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Probab=39.19 E-value=21 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.2 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 63 g~afV~f~~~~~A~~A~~~l~g 84 (110) T 1wf1_A 63 GYAFVQYSNERHARAAVLGENG 84 (110) T ss_dssp TEEEEECSSSHHHHHHHHHHTT T ss_pred CEEEEEECCHHHHHHHHHHhCC Confidence 3679999999999998886654No 104>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 4lmz_A 3nnh_A Probab=39.15 E-value=26 Score=26.42 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=34.3 Q ss_pred cceeEEEecC--CCChhHHHHHhhhhc--------cCCCCCCe-EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 116 QRTAIYVLNK--QTDIGDLAQKFNAAR--------QNSNQRPE-VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 116 eKT~IYVL~K--q~d~~dla~~l~~~~--------~~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) +.+.|||-+- ..+..||-+.+..-- .....++. .=||.|.+.++|..|.+.+... T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 159 (175) T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175) T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS T ss_pred CCceEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhccc Confidence 4567888663 444556665444211 11223332 4699999999999999888653No 105>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Probab=38.98 E-value=17 Score=23.76 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=15.7 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|.+.++|..|.+. T Consensus 43 ~afV~f~~~~~a~~A~~~ 60 (75) T 1iqt_A 43 FCFITFKEEEPVKKIMEK 60 (75) T ss_dssp CEEEECSSSHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHh Confidence 679999999999888765No 106>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Probab=38.21 E-value=23 Score=25.43 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=17.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 59 ~afV~f~~~~~a~~A~~~l~g 79 (115) T 2dgo_A 59 YGFVSFFNKWDAENAIQQMGG 79 (115) T ss_dssp EEEEEESSHHHHHHHHHHTTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999998877643No 107>4iuf_A TDP-43, TAR DNA-binding protein 43; RNA recognition motif, RNA binding; HET: XUA; 2.75A {Homo sapiens} SCOP: d.58.7.1 Probab=38.20 E-value=23 Score=23.29 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=15.0 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 45 ~afV~f~~~~~a~~a~~ 61 (77) T 4iuf_A 45 FGFVRFTEYETQVKVMS 61 (77) T ss_dssp EEEEEESSHHHHHHHHT T ss_pred eEEEEECCHHHHHHHHh Confidence 67999999999988876No 108>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} SCOP: d.58.7.0 PDB: 4f26_A 2k8g_A Probab=37.99 E-value=30 Score=24.65 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=18.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 47 ~afV~f~~~~~a~~a~~~l~g~ 68 (115) T 4f25_A 47 YGFVHFETQEAAERAIEKMNGM 68 (115) T ss_dssp EEEEEESCHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHcCCC Confidence 5699999999999998876543No 109>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 4qqb_A 3sxl_A* 1sxl_A 2sxl_A Probab=37.79 E-value=28 Score=26.02 Aligned_cols=55 Identities=31% Similarity=0.457 Sum_probs=35.3 Q ss_pred cceeEEEecC--CCChhHHHHHhhhh---------ccCCCCCCe-EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 116 QRTAIYVLNK--QTDIGDLAQKFNAA---------RQNSNQRPE-VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 116 eKT~IYVL~K--q~d~~dla~~l~~~---------~~~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) ..+.|||-+- ..+..||...+..- ......++. .-||.|.+.++|..|.+.+... T Consensus 88 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~F~~~~~A~~A~~~l~g~ 154 (168) T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168) T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC T ss_pred CCceEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEEeCCCCccceEEEEEECCHHHHHHHHHHhcCC Confidence 4467888664 44456666544321 111233443 4599999999999999988765No 110>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=37.58 E-value=27 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.8 Q ss_pred eEEEEEeCCHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQR 165 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~ 165 (229) -.-||.|.+.++|..|.. T Consensus 55 g~afV~f~~~~~A~~Ai~ 72 (100) T 2d9o_A 55 GTAVVEFATVKAAELAVQ 72 (100) T ss_dssp SEEEEEESCHHHHHHHHH T ss_pred CEEEEEECCHHHHHHHHH Confidence 467999999999998877No 111>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} SCOP: d.58.7.1 PDB: 3zzz_A Probab=37.54 E-value=29 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=17.8 Q ss_pred EEEEeCCHHHHHHHHHHHHH Q FBpp0084426 150 HFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 150 ~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -||.|.+.++|..|.+.+.. T Consensus 69 afV~f~~~~~A~~A~~~l~g 88 (130) T 3zzy_A 69 ALLQYADPVSAQHAKLSLDG 88 (130) T ss_dssp EEEEESCHHHHHHHHHHHTT T ss_pred EEEEECCHHHHHHHHHHcCC Confidence 79999999999999887754No 112>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=36.90 E-value=19 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 57 ~afV~f~~~~~a~~a~~~l~g 77 (103) T 2dnm_A 57 FAFVRFHDRRDAQDAEAAMDG 77 (103) T ss_dssp CEEEEESSSSHHHHHHHHHSS T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999999886644No 113>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Probab=36.78 E-value=32 Score=24.87 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 70 ~afV~f~~~~~A~~Ai~~l~g 90 (108) T 2jrs_A 70 YGFITFSDSECAKKALEQLNG 90 (108) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999887654No 114>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=36.73 E-value=46 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.9 Q ss_pred CCCeEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 145 QRPEVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 145 ~KPEV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .||+.|-||++|.|+|..-...|+. T Consensus 97 ~~~~~~~lrfk~~e~a~~f~~~~~e 121 (125) T 2ec1_A 97 TMPVTMLIRVKTSEDADELHKILLE 121 (125) T ss_dssp SSCEEEEEECSSHHHHHHHHHHHHH T ss_pred CccEEEEEEECCHHHHHHHHHHHHH Confidence 6999999999999999887777764No 115>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=36.36 E-value=20 Score=24.38 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=17.3 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.-||.|.+.++|..|...+. T Consensus 45 g~afV~f~~~~~a~~A~~~l~ 65 (91) T 2lxi_A 45 GFAFVEFSHLQDATRWMEANQ 65 (91) T ss_dssp SEEEEECSSHHHHHHHHHTTT T ss_pred eEEEEEECCHHHHHHHHHHcC Confidence 367999999999999876554No 116>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Probab=36.13 E-value=29 Score=27.61 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=33.8 Q ss_pred ceeEEEecC--CCChhHHHHHhhhhcc------CCCCCCeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 117 RTAIYVLNK--QTDIGDLAQKFNAARQ------NSNQRPEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 117 KT~IYVL~K--q~d~~dla~~l~~~~~------~~~~KPEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .+.|||-+= ..+..||-+.+..--. -.....-.-||+|+|.+||..|...+... T Consensus 151 ~~~l~V~nLp~~~t~~~L~~~F~~~G~iv~~v~~~~~~~g~afV~F~~~e~A~~A~~~l~g~ 212 (229) T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 212 (229) T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTC T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHcCCeeeEEEEEeCCCCEEEEEeCCHHHHHHHHHHhcCC Confidence 467788663 3445566554432211 01112347899999999999999888664No 117>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=35.68 E-value=30 Score=23.30 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.4 Q ss_pred eEEEEEeCCHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRA 166 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~ 166 (229) -.-||.|.+.++|..|... T Consensus 49 g~afV~f~~~~~a~~a~~~ 67 (85) T 2ytc_A 49 QCAFIQFATRQAAEVAAEK 67 (85) T ss_dssp TEEEEEESSHHHHHHHHHT T ss_pred CEEEEEeCCHHHHHHHHHH Confidence 4789999999999988765No 118>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 4lmz_A 3nnh_A Probab=35.67 E-value=32 Score=25.92 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 49 ~afV~f~~~~~A~~A~~~l~~ 69 (175) T 3nmr_A 49 CCFVTFYTRKAALEAQNALHN 69 (175) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhcC Confidence 569999999999999887754No 119>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=35.66 E-value=24 Score=24.76 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 52 ~afV~f~~~~~a~~a~~~l~g 72 (104) T 1p1t_A 52 YGFCEYQDQETALSAMRNLNG 72 (104) T ss_dssp EEEEECSCHHHHHHHHHHSSS T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 569999999999988876543No 120>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Probab=35.62 E-value=33 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 49 ~afV~f~~~~~a~~A~~~l~g 69 (115) T 3lqv_A 49 TAYVVYEDIFDAKNAVDHLSG 69 (115) T ss_dssp CEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999887654No 121>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Probab=35.24 E-value=33 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 66 ~afV~f~~~~~A~~A~~~l~g 86 (126) T 3ex7_B 66 YTLVEYETYKEAQAAMEGLNG 86 (126) T ss_dssp CEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999887654No 122>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Probab=35.10 E-value=32 Score=25.08 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=31.1 Q ss_pred ccceeEEEec--CCCChhHHHHHhhhhccCCCC--CCeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLN--KQTDIGDLAQKFNAARQNSNQ--RPEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 115 EeKT~IYVL~--Kq~d~~dla~~l~~~~~~~~~--KPEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .+.+.|||-+ ...+..||-..+..--.-..- .--.-||.|.+.++|..|...+... T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (108) T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGK 88 (108) T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTC T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEECCEEEEEECCHHHHHHHHHHhCCC Confidence 4456667644 333345555443321100000 0125699999999999998876543No 123>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Probab=35.00 E-value=35 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 70 ~afV~f~~~~~a~~A~~~l~g~ 91 (110) T 1oo0_B 70 YALVEYETHKQALAAKEALNGA 91 (110) T ss_dssp EEEEEESSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHhCCC Confidence 6799999999999998877543No 124>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A Probab=34.77 E-value=31 Score=26.22 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=34.9 Q ss_pred ccceeEEEecC--CCChhHHHHHhhhh---cc-CCCCC-CeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLNK--QTDIGDLAQKFNAA---RQ-NSNQR-PEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 115 EeKT~IYVL~K--q~d~~dla~~l~~~---~~-~~~~K-PEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) ...+.|||-+- ..+..||...+... .- ....+ --.-||+|.+.++|..|...+... T Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175) T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175) T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEE T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCcEEEccCCCCcCceEEEEECCHHHHHHHHHHhCCe Confidence 34578898764 44455666544321 10 11222 236799999999999999887654No 125>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=34.56 E-value=27 Score=24.27 Aligned_cols=20 Identities=5% Similarity=-0.092 Sum_probs=17.3 Q ss_pred eEEEEEeCCHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAI 167 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~I 167 (229) -.-||.|.+.++|..|...+ T Consensus 46 g~afV~f~~~~~a~~A~~~~ 65 (94) T 2e5g_A 46 VFAIVEMGDVGAREAVLSQS 65 (94) T ss_dssp CEEEEEESSHHHHHHHHTCS T ss_pred CEEEEEECCHHHHHHHHHHC Confidence 37899999999999987665No 126>4lir_A Nucleoporin NUP53; PF05172 family, NUP53/35/40-type RNA recognition motif, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Homo sapiens} SCOP: d.58.7.1 Probab=34.02 E-value=24 Score=27.69 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=34.0 Q ss_pred ccceeEEEecCCCChh-HHHHHhhhh----ccCCCCCCeEEEEEeCCHHHHHHHHHHHHHHhhhcCCcc Q FBpp0084426 115 EQRTAIYVLNKQTDIG-DLAQKFNAA----RQNSNQRPEVHFVKYRTPEDAANAQRAIQSQYDNLGGSS 178 (229) Q Consensus 115 EeKT~IYVL~Kq~d~~-dla~~l~~~----~~~~~~KPEV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGsS 178 (229) -+.|-|||-.=-++.. ++-..+..- .-.-+..----||+|++.++|.+|.+. .--.|||.- T Consensus 22 ~~~~~V~V~G~~~~~~~~vl~~F~~fGeI~~v~~~~~~n~~fV~f~s~~~Ae~AL~~---nG~~i~g~~ 87 (117) T 4lir_A 22 LDDSWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK---DGRIFGESI 87 (117) T ss_dssp CGGGEEEEECCCGGGHHHHHHHHTTSSCEEEEEECSSSSEEEEEESSHHHHHHHHTT---TTEEETTTE T ss_pred CCCCEEEEECCChhhHHHHHHHHHhcCCEEEEEccCCCCEEEEEeCCHHHHHHHHHh---CCeEECCcE Confidence 3456778877655533 332222110 000112334679999999999887754 444566654No 127>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Probab=33.91 E-value=29 Score=22.60 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=14.8 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.+ T Consensus 43 ~afV~f~~~~~a~~a~~ 59 (75) T 2mss_A 43 FGFVTFESEDIVEKVCE 59 (75) T ss_dssp EEEEECSCHHHHHHHHS T ss_pred EEEEEECCHHHHHHHHH Confidence 78999999999988764No 128>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2rug_A Probab=33.72 E-value=23 Score=25.35 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=17.8 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.=||.|.+.++|..|...+. T Consensus 53 g~afV~f~~~~~a~~A~~~~~ 73 (114) T 2dnl_A 53 GYAFLLFQEESSVQALIDACL 73 (114) T ss_dssp SEEEECCSSHHHHHHHHHHSE T ss_pred cEEEEEECCHHHHHHHHHHhh Confidence 468999999999998887754No 129>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=33.57 E-value=38 Score=24.17 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.9 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.-||.|.+.++|..|...+. T Consensus 53 g~afV~f~~~~~A~~Ai~~l~ 73 (105) T 1sjq_A 53 NQAFIEMNTEEAANTMVNYYT 73 (105) T ss_dssp TEEEEEESSHHHHHHHHHHHT T ss_pred CEEEEEECCHHHHHHHHHHhc Confidence 377999999999999987665No 130>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rra_A 2rrb_A Probab=33.51 E-value=37 Score=25.62 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.+||..|...+.. T Consensus 90 ~afV~F~~~~~A~~Ai~~l~g 110 (129) T 2kxn_B 90 FAFVYFENVDDAKEAKERANG 110 (129) T ss_dssp EEEEEESCHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHHCC Confidence 679999999999999887654No 131>4cq1_A Polypyrimidine tract-binding protein 2; translation, RNA binding protein, NPTB, BRPTB; 1.69A {Homo sapiens} SCOP: d.58.7.1 d.58.7.0 PDB: 2mju_A 1qm9_A Probab=33.38 E-value=35 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.5 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .=||.|.+.++|..|...+... T Consensus 158 ~afV~f~~~~~A~~Ai~~l~g~ 179 (196) T 4cq1_A 158 MALLQMATVEEAIQALIDLHNY 179 (196) T ss_dssp CEEEEESSHHHHHHHHHHHTTC T ss_pred eEEEEeCCHHHHHHHHHHhcCC Confidence 6899999999999999888664No 132>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A Probab=33.36 E-value=1.7e+02 Score=21.72 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-||.|.+.++|..|...+... T Consensus 75 ~afV~f~~~~~A~~Ai~~l~g~ 96 (121) T 2bz2_A 75 CAFVTYEKMESADQAVAELNGT 96 (121) T ss_dssp EEEEECSSHHHHHHHHHHHTTC T ss_pred EEEEEECCHHHHHHHHHHHCCC Confidence 6799999999999998877543No 133>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} PDB: 2yka_A Probab=33.31 E-value=37 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.6 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 77 g~afV~f~~~~~a~~A~~~l~g 98 (124) T 2kt5_A 77 GTADVHFERRADALKAMKQYKG 98 (124) T ss_dssp SEEEEEESSHHHHHHHHHHHTT T ss_pred eEEEEEECCHHHHHHHHHHcCC Confidence 3789999999999999887654No 134>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=33.20 E-value=30 Score=25.04 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.9 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 71 ~afV~f~~~~~A~~A~~~l~g 91 (109) T 2err_A 71 FGFVTFENSADADRAREKLHG 91 (109) T ss_dssp EEEEECCCSHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999999876644No 135>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} PDB: 2mb0_B 2mks_A Probab=32.98 E-value=26 Score=25.66 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=17.9 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.+||..|...+.. T Consensus 49 g~afV~f~~~~~A~~Ai~~l~g 70 (116) T 2fy1_A 49 GFAFITFENPADAKNAAKDMNG 70 (116) T ss_dssp CEEEEECSSHHHHHHHHHHCSS T ss_pred eEEEEEECCHHHHHHHHHHhCC Confidence 3689999999999998876543No 136>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Probab=32.63 E-value=30 Score=25.31 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=17.8 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|.+.+.. T Consensus 106 g~afV~f~~~~~a~~a~~~l~~ 127 (140) T 2ku7_A 106 GFAFVEFELAEDAAAAIDNMNE 127 (140) T ss_dssp SEEEEEESCHHHHHHHHHHSTE T ss_pred cEEEEEECCHHHHHHHHHHcCC Confidence 3679999999999998776543No 137>2mql_A Protein HNRNPL; RRM, RNA binding protein; NMR {Rattus norvegicus} Probab=32.43 E-value=19 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .=||.|.+.++|..|...+.. T Consensus 51 ~afV~f~~~~~A~~a~~~l~~ 71 (105) T 2mql_A 51 QALVEFEDVLGACNAVNYAAD 71 (105) T ss_dssp EEEEEESSHHHHHTTHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhhC Confidence 679999999999998877664No 138>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Probab=32.41 E-value=29 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|..|...+... T Consensus 73 g~afV~f~~~~~A~~A~~~l~g~ 95 (127) T 2a3j_A 73 GKAYIVFATQESAQAFVEAFQGY 95 (127) T ss_dssp CCEEEEESSHHHHHHHHHHSTTC T ss_pred eEEEEEECCHHHHHHHHHHhCCc Confidence 35799999999999998776553No 139>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.0 PDB: 2kg0_A Probab=32.30 E-value=13 Score=28.15 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.9 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|++.+||..|... T Consensus 86 ~afV~F~~~~~A~~Al~~ 103 (126) T 2hgm_A 86 EAFVQFASQELAEKALGK 103 (126) T ss_dssp EEEEEESSTTHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHH Confidence 679999999999888776No 140>3vaj_A Splicing factor U2AF 65 kDa subunit; RNA splicing factor, RNA recognition motif, RNA binding PROT binding protein-DNA complex; HET: DNA BRU CPQ; 1.90A {Homo sapiens} PDB: 3vaf_A* 3vah_A* 3vai_A* 3vag_A* 3vak_A* 3val_A* 3vam_A* 4tu8_A* 4tu9_A* 4tu7_A* 2g4b_A 2u2f_A Probab=32.18 E-value=28 Score=26.22 Aligned_cols=53 Identities=6% Similarity=0.120 Sum_probs=33.9 Q ss_pred ceeEEEec--CCCChhHHHHHhhhhc---------cCCCCCCe-EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 117 RTAIYVLN--KQTDIGDLAQKFNAAR---------QNSNQRPE-VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 117 KT~IYVL~--Kq~d~~dla~~l~~~~---------~~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .+.|||-+ ...+..||...+..-- .....++. .-||+|.+.++|..|...+.. T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 160 (174) T 3vaj_A 96 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 160 (174) T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSTTHHHHHHHHHTT T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCEeEEEEecccccCCcccEEEEEeccHHHHHHHHHhcCC Confidence 56788865 4444556666544311 01223333 679999999999999987765No 141>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=32.05 E-value=31 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.7 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|.+.+||..|... T Consensus 59 ~afV~f~~~~~a~~A~~~ 76 (104) T 1wg5_A 59 EAFVQFASQEIAEKALKK 76 (104) T ss_dssp EEEEEESSHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHh Confidence 679999999999888764No 142>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Probab=32.01 E-value=40 Score=24.84 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.1 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.++|..|...+... T Consensus 42 g~afV~f~~~~~a~~A~~~l~~~ 64 (166) T 3md3_A 42 NYAFVEYHQSHDANIALQTLNGK 64 (166) T ss_dssp EEEEEEESSHHHHHHHHHHHTTC T ss_pred cEEEEEeCCHHHHHHHHHHhcCC Confidence 36899999999999998776543No 143>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Probab=31.93 E-value=40 Score=25.08 Aligned_cols=57 Identities=26% Similarity=0.464 Sum_probs=33.1 Q ss_pred cccceeEEEec--CCCChhHHHHHhhhh---ccC--CCCCCeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 114 AEQRTAIYVLN--KQTDIGDLAQKFNAA---RQN--SNQRPEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 114 ~EeKT~IYVL~--Kq~d~~dla~~l~~~---~~~--~~~KPEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) ....+.|||-+ ...+..||-.-+..- ..- ....--.-||.|.+.++|..|.+.+... T Consensus 70 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~g~ 133 (150) T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 133 (150) T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC Confidence 34557778755 333344554433321 110 0112347899999999999998776543No 144>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=31.81 E-value=29 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.2 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 68 g~afV~f~~~~~a~~A~~~l~g 89 (115) T 2cpx_A 68 GQAFITFPNKEIAWQALHLVNG 89 (115) T ss_dssp SEEEEECSSHHHHHHHHHHSTT T ss_pred eEEEEEeCCHHHHHHHHHHhCC Confidence 3789999999999998876554No 145>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=31.79 E-value=35 Score=23.43 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.7 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 52 ~afV~f~~~~~a~~A~~ 68 (91) T 2dgw_A 52 YIFVDFSNEEEVKQALK 68 (91) T ss_dssp EEEEECSSHHHHHHHHH T ss_pred EEEEEECCHHHHHHHHh Confidence 67999999999988873No 146>4qu7_A GRSF-1, G-rich sequence factor 1; canonical RNA binding domain, RRM_6, PF14259; 2.50A {Homo sapiens} Probab=31.72 E-value=31 Score=23.27 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=14.5 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 43 ~afV~f~~~~~a~~A~ 58 (81) T 4qu7_A 43 EADVHFETHEDAVAAM 58 (81) T ss_dssp EEEEECSSHHHHHHHG T ss_pred EEEEEECCHHHHHHHH Confidence 6799999999999887No 147>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Probab=31.48 E-value=39 Score=26.24 Aligned_cols=27 Identities=41% Similarity=0.629 Sum_probs=20.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) .-||.|.+.++|..|...+.... |+|. T Consensus 72 ~afV~f~~~~~A~~A~~~l~~~~--~~g~ 98 (216) T 2qfj_A 72 FAFVEYEVPEAAQLALEQMNSVM--LGGR 98 (216) T ss_dssp EEEEEESSHHHHHHHHHHHSSCC--CC-C T ss_pred eEEEEeCCHHHHHHHHHhcCCce--eCCe Confidence 67999999999999988775542 4554No 148>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=31.00 E-value=39 Score=23.42 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=14.9 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 54 ~afV~f~~~~~a~~a~~ 70 (99) T 2dgs_A 54 FGFITFEDEQSVDQAVN 70 (99) T ss_dssp EEEEEESSHHHHHHHHH T ss_pred eEEEEECCHHHHHHHHh Confidence 67999999999988863No 149>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=30.56 E-value=34 Score=24.04 Aligned_cols=16 Identities=6% Similarity=0.227 Sum_probs=14.5 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 59 ~afV~f~~~~~a~~a~ 74 (104) T 1wi8_A 59 FGYAEFEDLDSLLSAL 74 (104) T ss_dssp CEEEEESSHHHHHHHH T ss_pred EEEEEECCHHHHHHHH Confidence 6799999999999886No 150>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=30.41 E-value=29 Score=25.17 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.6 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...+. T Consensus 59 ~afV~F~~~~~A~~Ai~~l~ 78 (116) T 2lcw_A 59 EATVSFDDPPSAKAAIDWFD 78 (116) T ss_dssp EEEECBSCHHHHHHHHHHSS T ss_pred EEEEEECCHHHHHHHHHHhC Confidence 67999999999988876554No 151>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Probab=30.37 E-value=24 Score=23.21 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=15.4 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|-+ T Consensus 44 ~afV~f~~~~~a~~a~~ 60 (77) T 1uaw_A 44 FGFVTFMDQAGVDKVLA 60 (77) T ss_dssp EEEECCCCTTHHHHHHH T ss_pred EEEEEEecHHHHHHHHH Confidence 67999999999998876No 152>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} SCOP: d.58.7.0 PDB: 3b4d_A 3b4m_A Probab=30.33 E-value=31 Score=23.47 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=16.2 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.-||.|.+.++|..|. .+. T Consensus 49 g~afV~f~~~~~a~~a~-~l~ 68 (89) T 3ucg_A 49 GFAYIEFSDKESVRTSL-ALD 68 (89) T ss_dssp EEEEEEESSTHHHHHHG-GGT T ss_pred cEEEEEECCHHHHHHHH-hcC Confidence 37899999999998887 443No 153>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 4qqb_A 3sxl_A* 1sxl_A 2sxl_A Probab=30.28 E-value=44 Score=24.93 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=18.1 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .=||.|.+.++|..|...+.. T Consensus 47 ~afV~f~~~~~A~~a~~~l~~ 67 (168) T 1b7f_A 47 YAFVDFTSEMDSQRAIKVLNG 67 (168) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEeCCHHHHHHHHHHhcC Confidence 679999999999999887654No 154>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Probab=30.25 E-value=36 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.8 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.+||..|...+. T Consensus 86 ~afV~f~~~~~a~~A~~~l~ 105 (139) T 1u6f_A 86 YGFVKFQSGSSAQQAIAGLN 105 (139) T ss_dssp EEEEEESSHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHcC Confidence 57999999999998877553No 155>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Probab=30.00 E-value=36 Score=25.77 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=18.2 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 82 g~afV~f~~~~~a~~A~~~l~g 103 (156) T 1h2v_Z 82 GFCFVEYYSRADAENAMRYING 103 (156) T ss_dssp EEEEEEESSHHHHHHHHHHTTT T ss_pred cEEEEEeCCHHHHHHHHHHhCC Confidence 3679999999999998876644No 156>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Probab=29.90 E-value=37 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=20.3 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) .-||.|.+.++|..|.+.+... .|+|. T Consensus 69 ~afV~f~~~~~A~~Ai~~l~g~--~~~g~ 95 (111) T 2jvr_A 69 TGALEFPSEEILVEALERLNNI--EFRGS 95 (111) T ss_dssp CEEEEESSHHHHHHHHHHTTTE--EETTE T ss_pred EEEEEECCHHHHHHHHHHhCCC--EECCE Confidence 6799999999999998765543 34553No 157>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} SCOP: d.58.7.1 Probab=29.86 E-value=37 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=27.4 Q ss_pred ceeEEEecC--CCChhHHHHHhhhhcc------CCCCCCeEEEEEeCCHHHHHHHHH Q FBpp0084426 117 RTAIYVLNK--QTDIGDLAQKFNAARQ------NSNQRPEVHFVKYRTPEDAANAQR 165 (229) Q Consensus 117 KT~IYVL~K--q~d~~dla~~l~~~~~------~~~~KPEV~FIKYrT~eeAa~AQ~ 165 (229) .|.+||-+= ..+..||...+..--. ... .--.-||.|.+.++|.+|.. T Consensus 11 ~~~l~v~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-~kg~aFV~f~~~~~A~~A~~ 66 (89) T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQSLCG 66 (89) T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHHHTT T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeeC-CCCEEEEEECCHHHHHHHHh Confidence 366777663 3334556554432110 011 12468999999999987644No 158>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Probab=29.62 E-value=43 Score=23.32 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=15.4 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 60 ~afV~f~~~~~a~~A~~ 76 (101) T 1fj7_A 60 FGYVDFESAEDLEKALE 76 (101) T ss_dssp EEEEEESSHHHHHHHHH T ss_pred EEEEEECCHHHHHHHHh Confidence 78999999999998885No 159>2mxy_A Heterogeneous nuclear ribonucleoproteins C1/C2; hnRNP C, RRM, complex, RNA binding protein-RNA complex; NMR {Homo sapiens} Probab=29.52 E-value=25 Score=24.88 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.1 Q ss_pred eEEEEEeCCHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ 168 (229) -.-||.|.+.++|..|...+. T Consensus 50 g~afV~f~~~~~a~~A~~~l~ 70 (105) T 2mxy_A 50 GFAFVQYVNERNARAAVAGED 70 (105) T ss_dssp SEEEEEESSHHHHHHHHTTTT T ss_pred CEEEEEECCHHHHHHHHHHcC Confidence 467999999999998877543No 160>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=29.37 E-value=40 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.9 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .=||.|.+.+||..|... T Consensus 58 ~afV~f~~~~~a~~A~~~ 75 (109) T 2dnn_A 58 NGLVKFLSPQDTFEALKR 75 (109) T ss_dssp EEEEECSSHHHHHHHHHT T ss_pred EEEEEECCHHHHHHHHHH Confidence 679999999999988776No 161>2mkc_A U2 snRNP component IST3; spliceosome, SNU17P, BUD13P, PML1P, heterotrimer, cooperativ splicing, RRM, protein binding, IST3P; NMR {Saccharomyces cerevisiae} PDB: 4uqt_A Probab=29.08 E-value=37 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.7 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 54 ~afV~f~~~~~a~~A~~~l~g 74 (118) T 2mkc_A 54 FAYLKYEDQRSTILAVDNLNG 74 (118) T ss_dssp EEEEEESSHHHHHHHHHHSTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999998876544No 162>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Probab=29.08 E-value=38 Score=23.94 Aligned_cols=19 Identities=5% Similarity=0.272 Sum_probs=15.9 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|. .+. T Consensus 63 ~afV~f~~~~~a~~A~-~l~ 81 (100) T 2j76_E 63 FGYAEFEDLDSLLSAL-SLN 81 (100) T ss_dssp CEEEEECCHHHHHHHH-HTT T ss_pred EEEEEECCHHHHHHHH-hcC Confidence 6799999999999887 543No 163>4cq1_A Polypyrimidine tract-binding protein 2; translation, RNA binding protein, NPTB, BRPTB; 1.69A {Homo sapiens} SCOP: d.58.7.1 d.58.7.0 PDB: 2mju_A 1qm9_A Probab=29.06 E-value=46 Score=25.76 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=19.7 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|++.++|..|.+.+... T Consensus 41 g~afV~f~~~~~a~~A~~~l~~~ 63 (196) T 4cq1_A 41 DSALIQMADGNQSQLAMNHLNGQ 63 (196) T ss_dssp EEEEEEESSHHHHHHHHHHHTTC T ss_pred CEEEEEECCHHHHHHHHHHhCCc Confidence 57899999999999998887654No 164>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} SCOP: d.58.7.1 PDB: 1hd0_A 1hd1_A Probab=28.95 E-value=40 Score=22.73 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=14.9 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 55 ~afV~f~~~~~a~~a~~ 71 (87) T 3s7r_A 55 FGFILFKDAASVEKVLD 71 (87) T ss_dssp EEEEEESSTHHHHHHHH T ss_pred EEEEEECCHHHHHHHHH Confidence 67999999999988865No 165>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=28.77 E-value=45 Score=23.38 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=14.6 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 59 ~afV~f~~~~~a~~a~~ 75 (103) T 2cqg_A 59 FGFVRFTEYETQVKVMS 75 (103) T ss_dssp EEEEEESSHHHHHHHHH T ss_pred EEEEEECCHHHHHHHHH Confidence 67999999999887765No 166>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} Probab=28.77 E-value=45 Score=26.76 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=20.8 Q ss_pred EEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 150 HFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 150 ~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) =||+|.+++||..|.+.+...+ ++|. T Consensus 178 ~fV~f~~~~~a~~Ai~~lng~~--~~gr 203 (222) T 3dxb_A 178 IFVEFSIASETHKAIQALNGRW--FAGR 203 (222) T ss_dssp EEEEESSHHHHHHHHHHHTTCB--SSSS T ss_pred EEEEeCChHHHHHHHHHhcCCE--eCCe Confidence 4999999999999998887643 4554No 167>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Probab=28.70 E-value=32 Score=29.22 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHh Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQY 171 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qY 171 (229) .=||+|++.++|..|..++..+. T Consensus 181 ~aFV~F~~~~~A~~A~~~l~g~~ 203 (240) T 3u1l_A 181 CGFVKFKYQANAEFAKEAMSNQT 203 (240) T ss_dssp EEEEEESSHHHHHHHHHHHTTCC T ss_pred EEEEEECCHHHHHHHHHHHcCCE Confidence 67999999999999988876543No 168>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.0 Probab=28.54 E-value=39 Score=23.69 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=14.4 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 58 ~afV~f~~~~~a~~a~ 73 (103) T 2dng_A 58 FCYVEFDEVDSLKEAL 73 (103) T ss_dssp EEEEEESSHHHHHHHG T ss_pred EEEEEECCHHHHHHHH Confidence 6799999999998886No 169>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Probab=28.52 E-value=22 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.0 Q ss_pred eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -.-||.|.+.++|..|...+.. T Consensus 62 g~afV~f~~~~~A~~A~~~l~g 83 (105) T 2nlw_A 62 GYIFLEYASPAHAVDAVKNADG 83 (105) T ss_dssp CEEEEEECSSSHHHHHHHHCSS T ss_pred EEEEEEECCHHHHHHHHHHhcC Confidence 4679999999999998876544No 170>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 4ed5_A 4egl_A* 1d8z_A 1d9a_A 3hi9_A Probab=28.42 E-value=50 Score=24.33 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|++.++|..|...+.. T Consensus 46 ~afV~f~~~~~a~~a~~~l~~ 66 (167) T 1fxl_A 46 YGFVNYIDPKDAEKAINTLNG 66 (167) T ss_dssp EEEEEESSHHHHHHHHHHHTT T ss_pred EEEEEecCHHHHHHHHHHcCC Confidence 569999999999999877654No 171>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Probab=28.19 E-value=48 Score=25.83 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=32.7 Q ss_pred ceeEEEecC--CCChhHHHHHhhhhcc--------CCCCCCeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 117 RTAIYVLNK--QTDIGDLAQKFNAARQ--------NSNQRPEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 117 KT~IYVL~K--q~d~~dla~~l~~~~~--------~~~~KPEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .+-|||-+- ..+..+|...+..--. .....--.-||.|.+.++|..|.+.+... T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 166 (213) T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 166 (213) T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTC T ss_pred CceEEEcCCCCcCCHHHHHHHhcCCCCEEEEEEEecCCCCccEEEEEECCHHHHHHHHHHhcCC Confidence 356888664 4445677665443210 01111124699999999999999887653No 172>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Probab=28.14 E-value=41 Score=23.49 Aligned_cols=18 Identities=17% Similarity=0.528 Sum_probs=15.1 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|.+.++|..|... T Consensus 47 ~afV~f~~~~~A~~A~~~ 64 (96) T 2kvi_A 47 FGFIQFDNPQSVRDAIEC 64 (96) T ss_dssp EEEEEESCHHHHHHHCCC T ss_pred EEEEEECCHHHHHHHHHH Confidence 569999999999888643No 173>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Probab=27.94 E-value=37 Score=27.08 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=17.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|.+.+.. T Consensus 86 ~aFV~F~~~~~A~~Ai~~lng 106 (164) T 1sjr_A 86 QALLQYADPVSAQHAKLSLDG 106 (164) T ss_dssp EEEEEESCHHHHHHHHHHSTT T ss_pred EEEEEeCCHHHHHHHHHHhCC Confidence 389999999999999877654No 174>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=27.85 E-value=38 Score=24.31 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.3 Q ss_pred EEEEEeCCHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAI 167 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~I 167 (229) .-||.|.+.+||..| ..+ T Consensus 59 ~afV~f~~~~~a~~A-~~~ 76 (114) T 2cpy_A 59 QALVQFKNEDDARKS-ERL 76 (114) T ss_dssp CEEEECSSHHHHHHH-GGG T ss_pred EEEEEECCHHHHHHH-HHh Confidence 679999999999999 443No 175>4h75_A Spindlin-1; tudor domain, H3K4ME3 binding, methylation, gene regulation; HET: M3L NHE; 2.10A {Homo sapiens} PDB: 2ns2_A Probab=27.81 E-value=21 Score=32.09 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=13.0 Q ss_pred CCCCCCeEEEEEeCC Q FBpp0084426 142 NSNQRPEVHFVKYRT 156 (229) Q Consensus 142 ~~~~KPEV~FIKYrT 156 (229) +.+-||.||||||.. T Consensus 134 Qvp~~ps~y~Ikyd~ 148 (238) T 4h75_A 134 RAPVMNTWFYITYEK 148 (238) T ss_dssp ECSSSTTSEEEEETT T ss_pred EeecCCcEEEEEecC Confidence 578899999999964No 176>2m88_A Protein NRD1; NRD1 complex, RNA processing and degradation, RRM structure, binding protein; NMR {Saccharomyces cerevisiae} Probab=27.59 E-value=56 Score=26.79 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.0 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -.-||.|.+.+||..|...+... T Consensus 70 g~aFV~f~~~~~A~~Ai~~l~g~ 92 (194) T 2m88_A 70 KHAFVKVYSRHEAENVLQNFNKD 92 (194) T ss_dssp TEEEEEESCHHHHHHHHHHHHHS T ss_pred CEEEEEeCCHHHHHHHHHHhcCC Confidence 37899999999999999888765No 177>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Probab=27.49 E-value=47 Score=23.88 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=15.6 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|.+.+||..|... T Consensus 69 ~afV~f~~~~~a~~A~~~ 86 (109) T 2rs2_A 69 FGFVTFMDQAGVDKVLAQ 86 (109) T ss_dssp CEEEEESSHHHHHHHHHS T ss_pred EEEEEECCHHHHHHHHHH Confidence 689999999999888764No 178>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens} SCOP: d.58.7.0 Probab=27.35 E-value=51 Score=24.46 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.0 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 94 ~afV~f~~~~~A~~A~~~l~g 114 (143) T 3egn_A 94 QAFIGLPNEKAAAKALKEANG 114 (143) T ss_dssp EEEEECSSHHHHHHHHHHHTT T ss_pred EEEEEECCHHHHHHHHHHhCC Confidence 679999999999998877654No 179>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Probab=27.28 E-value=29 Score=24.84 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.9 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...+. T Consensus 84 ~afV~f~~~~~a~~a~~~l~ 103 (118) T 2khc_A 84 FGFVSFDNPDSAQVAIKAMN 103 (118) T ss_dssp EEEEEEESSHHHHHHHHHCC T ss_pred EEEEEECCHHHHHHHHHHCC Confidence 67999999999998877643No 180>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=26.54 E-value=35 Score=24.74 Aligned_cols=19 Identities=11% Similarity=0.260 Sum_probs=15.8 Q ss_pred EEEEeCCHHHHHHHHHHHHH Q FBpp0084426 150 HFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 150 ~FIKYrT~eeAa~AQ~~IQ~ 169 (229) -||.|+++++|..|. .+.. T Consensus 61 ~FV~f~~~~~A~~Ai-~lng 79 (95) T 1ufw_A 61 MLVTFADSHSALSVL-DVDG 79 (95) T ss_dssp EEEECSCSHHHHHHH-HGGG T ss_pred EEEEECCHHHHHHHH-hcCC Confidence 599999999999987 5543No 181>4d0i_1 Extracellular hemoglobin linker L2 subunit; transport protein; 8.10A {Lumbricus terrestris} Probab=26.46 E-value=17 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=0.0 Q ss_pred CchhHHHHHHHHhhc-cccC Q FBpp0084426 1 MRFLIAFCLIGAACA-QYNY 19 (229) Q Consensus 1 Mr~~i~lcl~a~a~a-gYnY 19 (229) |+.|++|.+.|+... .-+| T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (288) T 4d0i_1 2 LRLLLLSALSGLILADHHQP 21 (288) T ss_dssp -------------------- T ss_pred ceehHhHHhhheeEEEeecc Confidence 888888888877655 6666No 182>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.0 Probab=25.70 E-value=33 Score=24.19 Aligned_cols=16 Identities=25% Similarity=0.521 Sum_probs=14.5 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 60 ~afV~f~~~~~a~~a~ 75 (105) T 2dh8_A 60 FGFVKFKDPNCVGTVL 75 (105) T ss_dssp EEEEEESSTTHHHHHH T ss_pred EEEEEECCHHHHHHHH Confidence 6799999999998887No 183>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} PDB: 4qu6_A Probab=25.69 E-value=45 Score=23.67 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=15.3 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 57 ~afV~f~~~~~a~~A~~ 73 (107) T 2lmi_A 57 DALIEMESEQDVQKALE 73 (107) T ss_dssp EEEEEBSSHHHHHHHHT T ss_pred EEEEEECCHHHHHHHHH Confidence 67999999999998876No 184>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1 Probab=25.69 E-value=41 Score=26.61 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=39.5 Q ss_pred cccceeEEEecCCCCh-hHHHHHhhhhcc----CCCCCCeEEEEEeCCHHHHHHHHHHHHHHhhhcCCcccccCCccccc Q FBpp0084426 114 AEQRTAIYVLNKQTDI-GDLAQKFNAARQ----NSNQRPEVHFVKYRTPEDAANAQRAIQSQYDNLGGSSQSINGGVANA 188 (229) Q Consensus 114 ~EeKT~IYVL~Kq~d~-~dla~~l~~~~~----~~~~KPEV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGsS~~~~~gvApv 188 (229) ....|.|+|--=.++. +++-..+...-. .-....---||+|++.++|++|.+. .=-.+||+-. .||.|. T Consensus 21 ~~~~~~V~V~Gf~~~~~~~vL~~F~~~GeIv~~~~~~~~nw~~V~f~sr~~AerAL~~---nG~~i~G~~~---Vgv~~~ 94 (119) T 1wwh_A 21 HLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK---DGRIFGESIM---IGVKPC 94 (119) T ss_dssp CGGGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT---TTCEETTTEE---CEEEEC T ss_pred CCCCCEEEEEeeCHHHHHHHHHHHHhccCEEEEEcCCCCCEEEEEeCCHHHHHHHHHh---CCeEeCCCEE---EEEEEc Confidence 3456788888876663 333333322100 0112334678999999999888765 3335566322 455555 Q ss_pred c Q FBpp0084426 189 I 189 (229) Q Consensus 189 ~ 189 (229) . T Consensus 95 ~ 95 (119) T 1wwh_A 95 I 95 (119) T ss_dssp C T ss_pred c Confidence 4No 185>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Probab=25.62 E-value=57 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=20.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) .-||.|.+.++|..|.+.+.... |+|. T Consensus 59 ~afV~f~~~~~A~~A~~~l~~~~--~~g~ 85 (213) T 4f02_A 59 YAYVNFQQPADAERALDTMNFDV--IKGK 85 (213) T ss_dssp EEEEEESSHHHHHHHHHHHTTCE--ETTE T ss_pred EEEEEECCHHHHHHHHHHhCCCE--EcCc Confidence 57999999999999988765432 5554No 186>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2lxu_A Probab=25.44 E-value=46 Score=24.01 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.9 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.++|..|.. T Consensus 63 ~afV~f~~~~~a~~A~~ 79 (118) T 2db1_A 63 EAFVELESEDDVKLALK 79 (118) T ss_dssp EEEEEBSSHHHHHHHGG T ss_pred EEEEEECCHHHHHHHHH Confidence 56999999999988866No 187>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=25.37 E-value=38 Score=23.14 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.2 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 44 ~afV~f~~~~~a~~a~ 59 (88) T 1wf0_A 44 FAFVTFADDQIAQSLC 59 (88) T ss_dssp CCEEECSCHHHHHHTT T ss_pred EEEEEECCHHHHHHHH Confidence 6799999999986543No 188>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=25.36 E-value=40 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.5 Q ss_pred EEEEeCCHHHHHHHH Q FBpp0084426 150 HFVKYRTPEDAANAQ 164 (229) Q Consensus 150 ~FIKYrT~eeAa~AQ 164 (229) -||.|.+.++|..|. T Consensus 52 ~FV~f~~~~~A~~Ai 66 (91) T 2dnr_A 52 MWVTFLEGSSALNVL 66 (91) T ss_dssp EEEEESSHHHHHHGG T ss_pred EEEEECCHHHHHHHH Confidence 599999999998876No 189>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=25.12 E-value=38 Score=23.89 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=14.3 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 57 ~afV~f~~~~~a~~A~ 72 (102) T 1wez_A 57 EADVEFATHEDAVAAM 72 (102) T ss_dssp EEEEECSSSHHHHHHH T ss_pred EEEEEECCHHHHHHHH Confidence 6799999999998876No 190>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Probab=25.11 E-value=20 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.3 Q ss_pred EEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 150 HFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 150 ~FIKYrT~eeAa~AQ~~IQ~q 170 (229) -||-|.++++|++|.++++.. T Consensus 49 a~V~F~~~~~A~~A~~~L~g~ 69 (104) T 1wey_A 49 VRINFSNPLSAADARLRLHKT 69 (104) T ss_dssp EEEECSSTTHHHHHHHTSTTS T ss_pred EEEEECCHHHHHHHHHHhCCC Confidence 699999999999999999874No 191>4qpt_A Heterogenous nuclear ribonucleoprotein L; RNA recognition motif, RRM, RNA, RNA binding protein; 1.35A {Rattus norvegicus} PDB: 2mqn_A 3s01_A 3to8_A 3tyt_A Probab=24.90 E-value=56 Score=25.90 Aligned_cols=55 Identities=4% Similarity=0.048 Sum_probs=34.8 Q ss_pred cceeEEE--ecCCCChhHHHHHhhhhccC---------CCCCC-eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 116 QRTAIYV--LNKQTDIGDLAQKFNAARQN---------SNQRP-EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 116 eKT~IYV--L~Kq~d~~dla~~l~~~~~~---------~~~KP-EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) ..+.||| |....+..||-..+..--.- ...++ -.-||+|.+.++|..|...+... T Consensus 125 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~~~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 191 (215) T 4qpt_A 125 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHY 191 (215) T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECCCSSCSSEEEEEECSSHHHHHHHHHHHTTC T ss_pred CCcEEEEeCCCCCcCHHHHHHHHHhcCCccceEEEEeecCCccccEEEEEeCCHHHHHHHHHHhcCc Confidence 3466888 44555556665544332111 11222 57899999999999999887664No 192>4yud_A RNA-binding protein 39; RNA recognition domain, RNP-1, PF00076 family, structural GE joint center for structural genomics, JCSG; 1.28A {Homo sapiens} PDB: 2mhn_A Probab=24.76 E-value=35 Score=23.40 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=16.5 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|. .+.. T Consensus 54 ~afV~f~~~~~a~~a~-~l~g 73 (92) T 4yud_A 54 IAYVEFVDVSSVPLAI-GLTG 73 (92) T ss_dssp EEEEEESSTTHHHHHH-TTTT T ss_pred EEEEEECCHHHHHHHH-hcCC Confidence 7899999999999887 5443No 193>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Probab=24.72 E-value=61 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=22.2 Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHhhhcCCc Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAIQSQYDNLGGS 177 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~IQ~qYD~LGGs 177 (229) -.-||.|++.++|..|...+... .|+|. T Consensus 73 g~afV~F~~~~~A~~A~~~l~~~--~~~g~ 100 (229) T 2adc_A 73 ENALVQMADGNQAQLAMSHLNGH--KLHGK 100 (229) T ss_dssp CCEEEEESCHHHHHHHHHHHTTC--BCSSS T ss_pred CEEEEEECCHHHHHHHHHHHCCC--eeCCc Confidence 47899999999999999887663 34554No 194>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 4yoe_A 2lyv_A 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Probab=24.36 E-value=56 Score=24.96 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=30.9 Q ss_pred ccceeEEEecC--CCChhHHHHHhhhhc---------cCCCCCCe-EEEEEeCCHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLNK--QTDIGDLAQKFNAAR---------QNSNQRPE-VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 115 EeKT~IYVL~K--q~d~~dla~~l~~~~---------~~~~~KPE-V~FIKYrT~eeAa~AQ~~ 166 (229) ...+.|||-+- ..+..+|...+..-- .....++. .-||+|.+.++|.+|... T Consensus 102 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196) T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196) T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC T ss_pred CCcCeEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEeCCCCCccceEEEEECCHHHHHHHHhc Confidence 34467888764 444566666544211 01122222 579999999999988764No 195>4c0o_C Serine/arginine-rich splicing factor 1; transport protein-RNA binding protein complex, nuclear impor repeat, RRM domain, RS domain; HET: SEP; 2.56A {Homo sapiens} PDB: 3beg_B* 2o3d_A 2m8d_B 2m7s_A 1wg4_A Probab=23.93 E-value=37 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.2 Q ss_pred eEEEEEeCCHHHHHHHHHHH Q FBpp0084426 148 EVHFVKYRTPEDAANAQRAI 167 (229) Q Consensus 148 EV~FIKYrT~eeAa~AQ~~I 167 (229) -.-||.|.+.++|..|...+ T Consensus 51 g~afV~f~~~~~a~~A~~~l 70 (125) T 4c0o_C 51 GTGVVEFVRKEDMTYAVRKL 70 (125) T ss_dssp SCEEEEESSHHHHHHCCCCC T ss_pred CEEEEEECCHHHHHHHHHHh Confidence 57799999999998886443No 196>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=23.61 E-value=43 Score=24.42 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=19.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCcc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGSS 178 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGsS 178 (229) .-||.|.+.++|..|... ... .|+|.. T Consensus 70 ~afV~f~~~~~a~~A~~~-~~~--~~~g~~ 96 (123) T 2dha_A 70 DAFVLFACEEYAQNALRK-HKD--LLGKRY 96 (123) T ss_dssp EEEECCSSHHHHHHHHTT-TTE--ESSSCE T ss_pred EEEEEECCHHHHHHHHHh-cCC--ccCCeE Confidence 689999999999888765 222 566653No 197>2mkh_A Cytoplasmic polyadenylation element-binding prote; CPEB1, RNA recognition motif (RRM), cytoplasmic polyadenylat translational regulation; NMR {Homo sapiens} PDB: 2mkk_A Probab=23.41 E-value=49 Score=25.86 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=32.1 Q ss_pred ccceeEEEec--CCCChhHHHHHhh-h---hcc-----CCCCCCe-EEEEEeCCHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLN--KQTDIGDLAQKFN-A---ARQ-----NSNQRPE-VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 115 EeKT~IYVL~--Kq~d~~dla~~l~-~---~~~-----~~~~KPE-V~FIKYrT~eeAa~AQ~~ 166 (229) +..+.|||-+ ...+..||-+.+. . +.. ....++. .=||+|.+.++|..|.+. T Consensus 130 ~~~~~l~v~nLp~~~t~~~l~~~F~~~~G~i~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 193 (212) T 2mkh_A 130 DPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSA 193 (212) T ss_dssp CTTCEEEEESCCSSCCHHHHHHHHHHHTSCCSEEEECCCTTCCCCSEEEEECSSSHHHHHHHHH T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhhcCCEEEEEEEeCCCCCccceEEEEeCCHHHHHHHHHh Confidence 4457788865 4555667766555 1 211 1122333 779999999999877653No 198>2mki_A Cytoplasmic polyadenylation element-binding prote; CPEB4, cytoplasmic polyadenylation, RNA recognition motif (R protein-RNA interaction, translational regulation; NMR {Homo sapiens} PDB: 2mkj_A Probab=23.23 E-value=52 Score=25.45 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=34.7 Q ss_pred ccceeEEEec--CCCChhHHHHHhhh----hcc------CCCCCC-eEEEEEeCCHHHHHHHHHHHHHHhhhcCC Q FBpp0084426 115 EQRTAIYVLN--KQTDIGDLAQKFNA----ARQ------NSNQRP-EVHFVKYRTPEDAANAQRAIQSQYDNLGG 176 (229) Q Consensus 115 EeKT~IYVL~--Kq~d~~dla~~l~~----~~~------~~~~KP-EV~FIKYrT~eeAa~AQ~~IQ~qYD~LGG 176 (229) +..+.|||=+ ...+..||-..+.. +.. ....++ -.=||.|.+.++|..| |+..+..|.| T Consensus 118 ~~~~~l~v~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~d~~~~~~kg~afV~F~~~~~A~~A---i~~~~~~l~~ 189 (203) T 2mki_A 118 DPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAA---ISARFVQLQH 189 (203) T ss_dssp CTTSEEEEESCCSCCCHHHHHHHHHHHTCCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHH---SSSSBCCCCC T ss_pred CCCceEEeCCCCCcCCHHHHHHHHHhhCCCeEEEEEeecCCCCCccceEEEEeCCHHHHHHH---HhcCcccccc Confidence 4556788854 55556677765552 110 012222 2579999999998876 4445555544No 199>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=23.10 E-value=56 Score=23.00 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.7 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|.+.++|..|... T Consensus 54 ~afV~f~~~~~a~~A~~~ 71 (103) T 1s79_A 54 SIFVVFDSIESAKKFVET 71 (103) T ss_dssp EEEEEESSHHHHHHHHTS T ss_pred EEEEEECCHHHHHHHHHh Confidence 679999999999988665No 200>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=23.03 E-value=53 Score=23.52 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.6 Q ss_pred EEEEEeCCHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRA 166 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~ 166 (229) .-||.|.+.++|..|... T Consensus 71 ~afV~f~~~~~a~~A~~~ 88 (116) T 1x4b_A 71 FGFVTFSSMAEVDAAMAA 88 (116) T ss_dssp EEEEECSSHHHHHHHHTS T ss_pred eEEEEeCCHHHHHHHHHh Confidence 679999999999888765No 201>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition M RRM, exonuclease, hydrolase, magnesium, metal-binding; HET: MGP; 2.10A {Homo sapiens} Probab=23.01 E-value=30 Score=25.12 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=31.0 Q ss_pred cceeEEEec--CCCChhHHHHHhhhh---ccCCCCCCeEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 116 QRTAIYVLN--KQTDIGDLAQKFNAA---RQNSNQRPEVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 116 eKT~IYVL~--Kq~d~~dla~~l~~~---~~~~~~KPEV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) ..|-|||-+ ...+..||-..+..- ..-.-. -..-||.|.+.++|..|...+.. T Consensus 4 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~~~i~-~~~aFV~f~~~~~A~~Ai~~lng 61 (101) T 3ctr_A 4 GSDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWID-DTSAFVSLSQPEQVKIAVNTSKY 61 (101) T ss_dssp EEEEEEEEECCTTCCHHHHHHHTTTSEEEEEEEEE-TTEEEEEEEEECHHHHHHHHHTT T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEc-CCEEEEEECCHHHHHHHHHHhCC Confidence 345588855 444455665543321 000000 12779999999999999887644No 202>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Probab=22.94 E-value=53 Score=26.27 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.2 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.+||..|...+.. T Consensus 131 ~afV~f~~~~~A~~Ai~~l~g 151 (177) T 2f3j_A 131 TADVHFERRADALKAMKQYKG 151 (177) T ss_dssp CEEEEESCHHHHHHHHHHSTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999988765543No 203>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=22.89 E-value=47 Score=23.69 Aligned_cols=20 Identities=10% Similarity=0.268 Sum_probs=16.8 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|. .+.. T Consensus 69 ~afV~f~~~~~a~~a~-~l~g 88 (114) T 2cq4_A 69 IAYVEFCEIQSVPLAI-GLTG 88 (114) T ss_dssp CEEEEESCGGGHHHHH-HHTT T ss_pred EEEEEECCHHHHHHHH-hcCC Confidence 6799999999999988 5543No 204>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E Probab=22.87 E-value=63 Score=26.39 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=35.0 Q ss_pred ccceeEEEecCCC---ChhHHHHHhhhhc--------cCCCCCC-eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLNKQT---DIGDLAQKFNAAR--------QNSNQRP-EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 115 EeKT~IYVL~Kq~---d~~dla~~l~~~~--------~~~~~KP-EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) ...+.|||-+--. +..||-..+..-- .....++ -.-||+|.|.++|..|...+... T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284) T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284) T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC T ss_pred cCCcceEeCCCCcccCCHHHHHHHHhcCCCceEEEEEeCCCCCcceEEEEEeCCHHHHHHHHHHhcCC Confidence 4457788876433 4466765444311 0112222 35699999999999999887654No 205>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.0 PDB: 2leb_A 2lec_A Probab=22.84 E-value=37 Score=25.75 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.6 Q ss_pred EEEEEeCCHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQ 168 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ 168 (229) .-||.|.+.++|..|...+. T Consensus 91 ~afV~f~~~~~A~~Ai~~l~ 110 (135) T 2lea_A 91 FAFVRFHDKRDAEDAMDAMD 110 (135) T ss_dssp CCEEECSCHHHHHHHHTTTT T ss_pred EEEEEeCCHHHHHHHHHHhC Confidence 56999999999988876554No 206>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Probab=22.62 E-value=1.1e+02 Score=22.92 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=23.4 Q ss_pred EEEEEeCCHHHHHHHHHHHHHHhhhcCCccc Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQSQYDNLGGSSQ 179 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~qYD~LGGsS~ 179 (229) --||.|.+.++|..|...+..... ++|... T Consensus 15 ~afV~f~~~~~a~~A~~~l~~~~~-~~g~~~ 44 (158) T 2kn4_A 15 ETTTEAVDAATAEKVFKQYANDNG-VDGEWT 44 (158) T ss_dssp EEEEECSSHHHHHHHHHHHHHHHT-CCCEEE T ss_pred eeeEEEeehhhHHHHHHHHhcccC-CCCccc Confidence 359999999999999998865543 777544No 207>4pkd_B U1A,SNRNP70, U1 small nuclear ribonucleoprotein A,U1 small NUC ribonucleoprotein 70 kDa; U1-70K, U1 snRNP, PRE-mRNA splicing, spliceosome; HET: GTP; 2.50A {Sus scrofa} PDB: 1fht_A 2l5i_A 2l5j_A* Probab=22.37 E-value=69 Score=26.08 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.4 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 53 ~afV~f~~~~~a~~a~~~l~~ 73 (279) T 4pkd_B 53 QAFVIFKEVSSATNALRSMQG 73 (279) T ss_dssp CEEEEESSHHHHHHHHHHHTT T ss_pred eEEEEeCCHHHHHHHHHHhcC Confidence 679999999999999887665No 208>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Probab=22.27 E-value=73 Score=24.55 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=36.6 Q ss_pred ccccceeEEEec--CCCChhHHHHHhhhhcc---------CCCCCCe-EEEEEeCCHHHHHHHHHHHHHHhhhcCC Q FBpp0084426 113 AAEQRTAIYVLN--KQTDIGDLAQKFNAARQ---------NSNQRPE-VHFVKYRTPEDAANAQRAIQSQYDNLGG 176 (229) Q Consensus 113 ~~EeKT~IYVL~--Kq~d~~dla~~l~~~~~---------~~~~KPE-V~FIKYrT~eeAa~AQ~~IQ~qYD~LGG 176 (229) ...+.+.|||-+ ...+..+|-..+..--. ....++- .-||.|.+.++|..|...+... .|+| T Consensus 68 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g 141 (165) T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA--EIMG 141 (165) T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC--EETT T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEecCCCCcccEEEEEEECCHHHHHHHHHHhCCC--EECC Confidence 345567888855 44445566654442210 1133333 6799999999999988776443 3444No 209>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=22.02 E-value=48 Score=24.13 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.8 Q ss_pred EEEEEeCCHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQR 165 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~ 165 (229) .-||.|.+.+||..|.. T Consensus 69 ~afV~f~~~~~a~~A~~ 85 (124) T 1wel_A 69 EGFVEFRNEADYKAALC 85 (124) T ss_dssp EEEEEBSSSHHHHHHHT T ss_pred EEEEEECCHHHHHHHHH Confidence 67999999999998853No 210>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Probab=21.73 E-value=69 Score=23.83 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=30.4 Q ss_pred cceeEEEec--CCCChhHHHHHhhhhcc---------CCCCCCe-EEEEEeCCHHHHHHHHH Q FBpp0084426 116 QRTAIYVLN--KQTDIGDLAQKFNAARQ---------NSNQRPE-VHFVKYRTPEDAANAQR 165 (229) Q Consensus 116 eKT~IYVL~--Kq~d~~dla~~l~~~~~---------~~~~KPE-V~FIKYrT~eeAa~AQ~ 165 (229) ..+-|||-+ ...+..||...+..--. ....++. .-||.|.+.++|..|.. T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~ 147 (167) T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167) T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH T ss_pred CCCcEEeCCCCCcCCHHHHHHHHHhCCCEEEEEEEEcCCCCccccEEEEEECCHHHHHHHHh Confidence 345688854 55556677665443211 0123333 68999999999888763No 211>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Probab=21.68 E-value=62 Score=26.23 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.2 Q ss_pred CeEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 147 PEVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 147 PEV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .-.-||+|.+.++|..|...+... T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~ 267 (282) T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGF 267 (282) T ss_pred CCEEEEEeCCHHHHHHHHHHcCCC Confidence 357899999999999999887653No 212>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Probab=21.43 E-value=62 Score=23.50 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=14.5 Q ss_pred EEEEEeCCHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQ 164 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ 164 (229) .-||.|.+.++|..|. T Consensus 80 ~afV~f~~~~~a~~A~ 95 (124) T 2jwn_A 80 YAYIEFAERNSVDAAV 95 (124) T ss_dssp EEEEEESSHHHHHHHH T ss_pred EEEEEECCHHHHHHHH Confidence 7799999999998886No 213>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3 Probab=21.30 E-value=89 Score=24.44 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.3 Q ss_pred CCCCeEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 144 NQRPEVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 144 ~~KPEV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) ..||++|-||++|+|+|..=...|.. T Consensus 105 ~~~~~~~~lrfk~~e~A~~f~~~~~e 130 (134) T 1rrp_B 105 LPKPEQLAIRFKTPEEAALFKCKFEE 130 (134) T ss_dssp SCEEEEEEEECSSHHHHHHHHHHHHH T ss_pred CCceEEEEEEECCHHHHHHHHHHHHH Confidence 45899999999999999876666643No 214>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Probab=21.23 E-value=61 Score=25.21 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=17.6 Q ss_pred EEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 149 VHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 149 V~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-||.|.+.++|..|...+.. T Consensus 101 ~afV~f~~~~~A~~Ai~~l~g 121 (156) T 3n9u_C 101 YAEVVVASENSVHKLLELLPG 121 (156) T ss_dssp EEEEEESCHHHHHHHHHHSTT T ss_pred EEEEEECCHHHHHHHHHHcCC Confidence 679999999999998876543No 215>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} Probab=21.15 E-value=43 Score=20.24 Aligned_cols=9 Identities=56% Similarity=0.899 Sum_probs=7.2 Q ss_pred CCeEEEEEe Q FBpp0084426 146 RPEVHFVKY 154 (229) Q Consensus 146 KPEV~FIKY 154 (229) -|-|||.|+ T Consensus 2 npVVHFfr~ 10 (23) T 1ymm_C 2 NPVVHFFKN 10 (26) T ss_pred Cceeeeeee Confidence 378999887No 216>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A Probab=21.06 E-value=51 Score=25.49 Aligned_cols=55 Identities=5% Similarity=0.144 Sum_probs=34.3 Q ss_pred ccceeEEEec--CCCChhHHHHHhhhh---c------cCCCCCC-eEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 115 EQRTAIYVLN--KQTDIGDLAQKFNAA---R------QNSNQRP-EVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 115 EeKT~IYVL~--Kq~d~~dla~~l~~~---~------~~~~~KP-EV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) +..+.|||-+ ...+..||-..+..- . .....++ -.-||.|.+.++|..|...+.. T Consensus 112 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 178 (198) T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198) T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC Confidence 3457788854 455556666544431 1 0022222 3579999999999999887765No 217>4qpt_A Heterogenous nuclear ribonucleoprotein L; RNA recognition motif, RRM, RNA, RNA binding protein; 1.35A {Rattus norvegicus} PDB: 2mqn_A 3s01_A 3to8_A 3tyt_A Probab=20.98 E-value=79 Score=25.04 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=19.4 Q ss_pred CeEEEEEeCCHHHHHHHHHHHHH Q FBpp0084426 147 PEVHFVKYRTPEDAANAQRAIQS 169 (229) Q Consensus 147 PEV~FIKYrT~eeAa~AQ~~IQ~ 169 (229) .-.-||.|.+.++|..|...+.. T Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~ 67 (215) T 4qpt_A 45 PGAAMVEMADGYAVDRAITHLNN 67 (215) T ss_dssp TTCEEEEESSHHHHHHHHHHHTT T ss_pred CcEEEEEECCHHHHHHHHHHhCC Confidence 35689999999999999887765No 218>4pkd_B U1A,SNRNP70, U1 small nuclear ribonucleoprotein A,U1 small NUC ribonucleoprotein 70 kDa; U1-70K, U1 snRNP, PRE-mRNA splicing, spliceosome; HET: GTP; 2.50A {Sus scrofa} PDB: 1fht_A 2l5i_A 2l5j_A* Probab=20.07 E-value=62 Score=26.39 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=33.5 Q ss_pred ceeEEEec--CCCChhHHHHHhhhhc---------cCCCCCC-eEEEEEeCCHHHHHHHHHHHHHH Q FBpp0084426 117 RTAIYVLN--KQTDIGDLAQKFNAAR---------QNSNQRP-EVHFVKYRTPEDAANAQRAIQSQ 170 (229) Q Consensus 117 KT~IYVL~--Kq~d~~dla~~l~~~~---------~~~~~KP-EV~FIKYrT~eeAa~AQ~~IQ~q 170 (229) .+.|||-+ ...+..||...+..-- .....++ -.-||+|.+.++|..|...+... T Consensus 166 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 231 (279) T 4pkd_B 166 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 231 (279) T ss_dssp GGEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHCTTC T ss_pred CCEEEEECCCCCCCHHHHHHHHHHcCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC Confidence 36788865 3444556665444211 1123344 35699999999999998876543No 219>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1 Probab=20.06 E-value=46 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=16.4 Q ss_pred CCCCeEEEEEeCCHHHHHH Q FBpp0084426 144 NQRPEVHFVKYRTPEDAAN 162 (229) Q Consensus 144 ~~KPEV~FIKYrT~eeAa~ 162 (229) .+.=|+||+.|++.|||.. T Consensus 183 ~~DIeIhF~HYkSfeEAke 201 (306) T 2g6t_A 183 DNKIILNFNHQASFAEAKN 201 (306) T ss_dssp TTCEEEEECSCSSHHHHHH T ss_pred CCCeEEEEEecCCHHHHHH Confidence 4567999999999999965