Query FBpp0290327 type=protein; loc=3L:join(7012190..7012289,7012739..7013277,7033869..7033964,7034503..7034538,7034635..7034703,7034972..7035038,7035170..7035315,7035744..7035881,7038005..7038151,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0290327; name=Mp-PB; parent=FBgn0260660,FBtr0301105; dbxref=REFSEQ:NP_001163356,GB_protein:ACZ94627,FlyBase:FBpp0290327,FlyBase_Annotation_IDs:CG42543-PB,FlyMine:FBpp0290327,modMine:FBpp0290327; MD5=8044c763f7a579bf163a0b0574128f23; length=1008; release=r6.06; species=Dmel; Match_columns 1008 No_of_seqs 780 out of 2757 Neff 6.3 Searched_HMMs 35384 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1dy2_A Collagen alpha1(XV) cha 100.0 1.7E-62 4.7E-67 489.8 12.8 173 795-971 3-176 (180) 2 1koe_A Endostatin; angiogenesi 100.0 9.6E-62 2.7E-66 489.4 11.2 170 799-968 1-171 (172) 3 2uur_A Collagen alpha-1(IX) ch 100.0 2.6E-34 7.2E-39 310.8 18.9 194 35-238 30-235 (245) 4 2erf_A Thrombospondin-1; TSP-1 100.0 1.4E-32 3.9E-37 290.5 16.2 194 34-234 2-209 (209) 5 3hqv_A Collagen alpha-1(I) cha 100.0 4.6E-29 1.3E-33 313.4 40.7 32 653-684 997-1028(1056) 6 1za4_A Thrombospondin 1; TSP-1 100.0 3.2E-31 9.1E-36 287.5 16.6 197 34-237 12-222 (251) 7 3hqv_B Collagen alpha-2(I) cha 100.0 1.1E-28 3E-33 309.5 40.0 9 675-683 1014-1022(1028) 8 3hsh_A Endostatin, collagen al 99.5 3.4E-15 9.6E-20 123.2 4.6 53 716-768 3-55 (56) 9 3n3f_A Collagen alpha-1(XV) ch 99.5 5.2E-15 1.5E-19 121.3 5.4 52 717-768 2-53 (54) 10 3sh4_A LG3 peptide; actin disa 98.9 2E-08 5.6E-13 103.8 16.2 151 62-224 5-168 (195) 11 3v64_A Low-density lipoprotein 98.9 3.6E-08 1E-12 101.5 17.6 152 63-225 3-172 (191) 12 3pve_A Agrin, AGRN protein; mR 98.8 1.1E-07 3.2E-12 97.8 17.2 150 64-224 11-170 (189) 13 1pz7_A Agrin; structural prote 98.8 9.8E-08 2.8E-12 99.6 16.8 126 87-223 49-183 (204) 14 4pbp_A C-reactive protein; acu 98.8 1.2E-07 3.3E-12 98.8 15.8 158 54-228 2-172 (210) 15 3flp_A SAP-like pentraxin; phy 98.7 3.8E-07 1.1E-11 95.3 17.1 158 62-228 6-175 (217) 16 2h0b_A Neurexin-1-alpha; B-san 98.7 3.3E-07 9.2E-12 93.8 16.0 136 87-234 29-178 (184) 17 2r16_A Neurexin-1-alpha; beta- 98.7 3.4E-07 9.6E-12 93.8 15.9 126 87-225 28-158 (182) 18 4avs_A Serum amyloid P-compone 98.6 8.6E-07 2.4E-11 91.9 16.6 150 62-228 6-166 (204) 19 3bod_A Neurexin-1-alpha; neure 98.6 7.9E-07 2.2E-11 91.0 15.9 126 87-224 30-156 (178) 20 3pvn_A C-reactive protein; pen 98.5 1.4E-06 4.1E-11 90.3 16.0 150 62-228 6-168 (206) 21 3asi_A Neurexin-1-alpha; beta- 98.4 3.5E-06 1E-10 97.3 15.5 127 87-225 250-377 (410) 22 1d2s_A SHBG, sex hormone-bindi 98.4 7.1E-06 2E-10 83.3 15.3 123 87-225 27-157 (170) 23 4c1w_A Neuraminidase; sugar bi 98.3 6.4E-06 1.8E-10 84.5 14.4 136 87-228 34-181 (188) 24 2v73_A CBM40, putative EXO-alp 98.3 1.7E-05 4.7E-10 82.5 17.4 135 86-228 40-180 (191) 25 1f5f_A SHBG, sex hormone-bindi 98.3 1.6E-05 4.5E-10 83.2 16.3 128 87-225 39-175 (205) 26 2jd4_A Laminin subunit alpha-1 98.2 1.6E-05 4.5E-10 90.8 16.1 125 87-224 221-356 (383) 27 2r1d_A Neurexin-1-beta, neurex 98.2 1.8E-05 5.1E-10 84.4 15.4 126 87-224 64-190 (226) 28 1dyk_A Laminin alpha 2 chain; 98.1 3E-05 8.5E-10 88.9 15.8 126 87-225 233-369 (394) 29 2r1b_A Neurexin-1-beta, neurex 98.1 5.9E-05 1.7E-09 79.9 15.2 127 87-224 36-192 (220) 30 4qvs_A S-layer domain-containi 98.0 9.4E-06 2.7E-10 84.9 8.7 164 53-228 38-213 (227) 31 1h30_A GAS6, growth-arrest-spe 97.8 0.00034 9.7E-09 81.0 17.6 127 87-223 62-196 (422) 32 2jd4_A Laminin subunit alpha-1 97.8 0.00059 1.7E-08 77.9 17.5 126 87-224 44-177 (383) 33 1a8d_A Tetanus neurotoxin; clo 97.6 0.0028 7.9E-08 74.3 20.1 165 51-228 47-235 (452) 34 4dqa_A Uncharacterized protein 97.6 0.0013 3.7E-08 74.7 16.8 150 62-228 140-295 (355) 35 1dyk_A Laminin alpha 2 chain; 97.5 0.0013 3.6E-08 75.4 16.2 126 87-225 58-191 (394) 36 2wjs_A Laminin subunit alpha-2 97.5 0.0009 2.6E-08 81.3 14.7 124 87-223 408-540 (608) 37 3asi_A Neurexin-1-alpha; beta- 97.4 0.0015 4.3E-08 75.3 15.3 123 87-224 27-162 (410) 38 2jkb_A Sialidase B; intramolec 97.4 0.0015 4.3E-08 80.7 15.7 163 62-232 34-210 (686) 39 1h30_A GAS6, growth-arrest-spe 97.4 0.00082 2.3E-08 77.9 12.6 127 87-221 250-392 (422) 40 2vu9_A Botulinum neurotoxin A 97.4 0.006 1.7E-07 69.7 18.0 167 50-230 48-230 (444) 41 3vuo_A NTNHA; protection of bo 97.2 0.0078 2.2E-07 75.8 17.5 155 51-228 864-1025(1196) 42 2wjs_A Laminin subunit alpha-2 97.1 0.0071 2E-07 73.5 16.6 126 87-222 226-363 (608) 43 3n7l_A Neurotoxin; HCR/D-SA, g 97.0 0.0036 1E-07 72.5 12.1 163 51-229 32-218 (424) 44 3qcw_A Neurexin-1-alpha; synap 97.0 0.0074 2.1E-07 79.5 16.1 123 89-223 1084-1207(1245) 45 3v0a_B NTNH; botulinum neuroto 97.0 0.013 3.7E-07 73.6 16.9 155 51-228 867-1028(1196) 46 3pme_A Type C neurotoxin; stru 96.9 0.015 4.4E-07 66.2 15.7 166 51-230 31-209 (420) 47 3rsj_A BONT/F; clostridium bot 96.8 0.087 2.5E-06 59.7 20.3 163 50-229 29-210 (413) 48 2nyy_A Botulinum neurotoxin ty 96.6 0.061 1.7E-06 67.7 18.9 165 50-228 900-1080(1295) 49 1epw_A Bontoxilysin B, botulin 96.6 0.071 2E-06 68.0 19.2 153 61-228 894-1067(1290) 50 2sli_A Intramolecular trans-si 96.4 0.04 1.1E-06 68.1 15.9 136 85-228 34-184 (679) 51 3qcw_A Neurexin-1-alpha; synap 96.4 0.026 7.3E-07 74.4 15.0 122 87-223 859-993 (1245) 52 2vxr_A Botulinum neurotoxin ty 96.1 0.13 3.5E-06 59.0 16.4 164 50-230 76-261 (482) 53 3ffz_A Botulinum neurotoxin ty 94.6 1 3E-05 56.9 18.7 161 51-228 876-1056(1252) 54 4b1m_A Levanase; hydrolase, CB 94.1 0.25 7.1E-06 50.6 10.1 89 87-182 65-157 (185) 55 1ms9_A Trans-sialidase; trans- 89.8 5.1 0.00014 49.2 15.9 126 87-227 495-627 (648) 56 1ei8_A Collagen-like peptide ( 89.4 0.58 1.6E-05 33.8 4.4 12 324-335 15-26 (29) 57 4ccd_A Galactocerebrosidase; h 88.9 3.1 8.8E-05 51.2 13.3 88 87-181 528-621 (654) 58 1pwb_A SP-D, PSP-D, pulmonary 83.2 0.28 7.9E-06 49.0 0.0 11 954-964 165-175 (177) 59 1pwb_A SP-D, PSP-D, pulmonary 77.3 0.58 1.6E-05 46.7 0.0 7 909-915 112-118 (177) 60 3w9a_A CCGH131A, putative unch 73.5 16 0.00045 39.4 9.7 76 87-175 93-175 (245) 61 2zzj_A Glucuronan lyase A; bet 67.2 1.1E+02 0.0031 32.6 14.8 177 50-235 21-233 (238) 62 4le3_A Beta-glucanase; GH131, 66.2 23 0.00065 38.3 9.1 77 87-175 94-181 (252) 63 2dpr_A Conantokin-T, CON-T; co 57.2 5.5 0.00016 25.6 1.4 12 996-1007 2-13 (21) 64 3zyp_A CIP1; metal binding pro 54.6 71 0.002 33.9 10.2 118 59-184 36-165 (218) 65 3imm_A Putative secreted glyco 50.4 22 0.00061 36.9 5.6 103 79-182 39-146 (201) 66 1buu_A Protein (mannose-bindin 47.1 4.9 0.00014 40.1 0.0 13 952-964 152-164 (168) 67 3s5q_A Putative glycosylhydrol 44.8 29 0.00081 36.5 5.5 103 79-182 52-159 (214) 68 3h3l_A Putative sugar hydrolas 36.5 29 0.00083 37.1 4.0 104 80-183 70-180 (241) 69 3u1x_A Putative glycosyl hydro 35.9 72 0.002 33.8 6.9 30 154-183 158-187 (236) 70 3hbk_A Putative glycosyl hydro 33.8 1.3E+02 0.0036 32.2 8.4 103 79-183 77-191 (245) 71 3i8t_A Galectin-4; S-type lect 33.7 4.2E+02 0.012 26.5 13.1 122 60-182 10-136 (164) 72 1o91_A Collagen alpha 1(VIII) 30.5 13 0.00036 38.1 0.0 55 867-927 70-125 (178) 73 4jqt_A Putative glycosyl hydro 28.0 1.6E+02 0.0045 34.1 8.6 101 79-181 44-153 (431) 74 3wvj_A Beta-glucanase; thermos 25.8 6.3E+02 0.018 26.0 15.6 28 155-182 143-170 (220) 75 1ajo_A CPA16M-127, circularly 24.8 2E+02 0.0057 30.0 7.9 74 155-232 15-96 (214) 76 1buu_A Protein (mannose-bindin 23.6 20 0.00058 35.5 0.0 6 821-826 71-76 (168) 77 1axk_A Gluxyn-1; bifunctional, 23.2 1E+03 0.028 27.4 14.9 68 155-226 83-158 (394) 78 3iln_A Laminarinase; jelly ROW 22.7 7.2E+02 0.02 26.1 12.0 35 149-183 158-192 (251) 79 3i4i_A 1,3-1,4-beta-glucanase; 22.0 7.8E+02 0.022 25.7 16.1 29 154-182 160-188 (234) 80 1umz_A Xyloglucan endotransgly 21.8 8.9E+02 0.025 26.3 17.8 28 155-182 130-157 (278) 81 4qhz_A Putative glycosyl hydro 21.0 80 0.0023 34.0 4.0 91 78-181 86-200 (246) 82 1dyp_A Kappa-carrageenase; hyd 21.0 2.5E+02 0.0071 30.0 8.0 30 154-183 188-217 (271)No 1>1dy2_A Collagen alpha1(XV) chain; angiogenesis inhibitor; 2.0A {Mus musculus} SCOP: d.169.1.5 Probab=100.00 E-value=1.7e-62 Score=489.81 Aligned_cols=173 Identities=51% Similarity=0.971 Sum_probs=164.4 Q ss_pred CCCCCCcEEEEEccCCCCCCCCCcccchhhhHHHhhhcCCCCceeEEEeccccCcccccCCCCC-CCccccCCCcEEecC Q FBpp0290327 795 PLLNTPTLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDTIVRPADR-DLPVVNTRGDVLFNS 873 (1008) Q Consensus 795 ~~~~~~~l~~~a~~~~~~g~~~Gi~GaD~~C~~~a~~~g~~gt~rA~Ls~~~~~~~~~V~~~dr-~~p~vn~~g~vl~~~ 873 (1008) ....+|+|||||||+|++|||+ ||++||+|||++|++||||||||+++||+++||+++|| ++||||+||+|||+| T Consensus 3 ~~~~~~~L~lvALN~P~sG~m~----AD~~C~~qAraaGl~gTfRAfLSs~~qdl~~iV~~~DR~~~PivNlkGevLf~s 78 (180) T 1dy2_A 3 LAYERPVLHLVALNTPVAGDIR----ADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNN 78 (180) T ss_dssp ----CCCEEEEECSSCBCSBCC----HHHHHHHHHHHTTCCSCEEESSCBTTBCGGGSSCGGGSSSCCEECTTSCEEESC T ss_pred ccCCCccEEEEEcCCCCCCCch----HHHHHHHHHHHhCCCCceEEEeecccccCccccCHhHcCCCCeEcCCCCEEecC Confidence 3457899999999999999999 99999999999999999999999999999999999999 799999999999999 Q ss_pred ccccccCCCCcccCCCceeecCCCccCCCCCCCCceEEecCCCCcccccccccccccCCCCCceeecccCCccccccccc Q FBpp0290327 874 WKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLDGHKLLEQKR 953 (1008) Q Consensus 874 ~~~l~~~~~~~~~~~~~i~~f~~~~~l~~~~~~~k~vw~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~~~~~~~~~~ 953 (1008) |++||++++++|+.+.+||+||+||||+|++||||+|||||++||++.+++||++|||++.+++|+||+|.+++||.|+. T Consensus 79 w~~lf~g~~~~l~~~~~Iysfdg~dVl~d~~wP~K~vWhGS~~~G~r~~d~~C~~W~s~~~~~~G~Assl~~g~ll~q~~ 158 (180) T 1dy2_A 79 WDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVVWHGSNPHGVRLVDKYCEAWRTTDMAVTGFASPLSTGKILDQKA 158 (180) T ss_dssp SGGGGSSSCCBCCTTSCCBBTTSCBTTTCTTCSSCEEECCBCTTSCBCTTSBHHHHBCCCTTCEEEEEEGGGTBSSCCEE T ss_pred HHHHhCCCCCccCCCCCeeccCCcccccCCCccccccccCCCCCCCCcccccccCCccCCCCceEeeeecCCCCcccCcc Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCCceEEEEecccHh Q FBpp0290327 954 QSCDSKLIILCVEALSQD 971 (1008) Q Consensus 954 ~~C~~~~~~lCve~~~~~ 971 (1008) +||+++||||||||+... T Consensus 159 ~sC~~~~ivLCIEn~~~~ 176 (180) T 1dy2_A 159 YSCANRLIVLCIENSFMT 176 (180) T ss_dssp EETTSCBBCEEEECCC-- T ss_pred cCCCCceEEEEEEccccc Confidence 999999999999998653No 2>1koe_A Endostatin; angiogenesis inhibitor, collagen XVIII, non-collageneous domain, heparin-binding domain; 1.50A {Mus musculus} SCOP: d.169.1.5 PDB: 1dy0_A 1dy1_A 1bnl_A Probab=100.00 E-value=9.6e-62 Score=489.39 Aligned_cols=170 Identities=48% Similarity=0.921 Sum_probs=166.6 Q ss_pred CCcEEEEEccCCCCCCCCCcccchhhhHHHhhhcCCCCceeEEEeccccCcccccCCCCC-CCccccCCCcEEecCcccc Q FBpp0290327 799 TPTLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGI 877 (1008) Q Consensus 799 ~~~l~~~a~~~~~~g~~~Gi~GaD~~C~~~a~~~g~~gt~rA~Ls~~~~~~~~~V~~~dr-~~p~vn~~g~vl~~~~~~l 877 (1008) +|+|||||||+||+|||+||+|||++||+||+++|++||||||||+++||+++||+++|| ++||||+||||||+||+|| T Consensus 1 ~~~l~lvaln~p~~GnlgGi~GAD~~C~~~A~aaGl~gtfRAfLSs~~q~~~~iV~~~dr~~~P~vN~kg~vl~~~~~~l 80 (172) T 1koe_A 1 QPVLHLVALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSL 80 (172) T ss_dssp CCCEEEEECSSCBCSCSSHHHHHHHHHHHHHHHTTCCSCEEESCCBTTBCGGGGSCGGGTTTCCEECTTCCEEESCHHHH T ss_pred CCceEEEEeCCCcCCCcccchhHHHHHHHHHHhcCCCCeeEEEEEcccCCccceeccccccCCCeECCcCcEEeCCHHHh Confidence 478999999999999999999999999999999999999999999999999999999999 7999999999999999999 Q ss_pred ccCCCCcccCCCceeecCCCccCCCCCCCCceEEecCCCCcccccccccccccCCCCCceeecccCCccccccccccccc Q FBpp0290327 878 FNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCD 957 (1008) Q Consensus 878 ~~~~~~~~~~~~~i~~f~~~~~l~~~~~~~k~vw~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C~ 957 (1008) |++++++|+++..||+||+||||+|++||+|+|||||++||+|.+++||++|||++.+++|+||+|++++||+|+.++|+ T Consensus 81 ~~~~~~~~~~~~~i~sfn~~dvl~d~~wp~k~vWtGs~~~G~~~~~~~C~~Wts~~~~~~G~assl~~~~ll~q~~~sCs 160 (172) T 1koe_A 81 FSGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTETTGATGQASSLLSGRLLEQKAASCH 160 (172) T ss_dssp TSSSCSBCCTTCCCBBTTSCBTTTCTTSSSCEEECCBCTTSCBCTTSBHHHHTCCCTTCEEEEEEGGGTBSCCCEEEETT T ss_pred cCCCCccccCCCceEccCCCccccCCCCccceeEECCCCCCcCcCCCcccCCcCCCCCceEeeccCCCCCcccCcCCCcC Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999 Q ss_pred CCceEEEEecc Q FBpp0290327 958 SKLIILCVEAL 968 (1008) Q Consensus 958 ~~~~~lCve~~ 968 (1008) ++|+||||||+ T Consensus 161 ~~~~vLCIE~~ 171 (172) T 1koe_A 161 NSYIVLCIENS 171 (172) T ss_dssp SCBBCEEEECC T ss_pred CCcEEEEEeec Confidence 99999999996No 3>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Probab=100.00 E-value=2.6e-34 Score=310.77 Aligned_cols=194 Identities=18% Similarity=0.266 Sum_probs=163.5 Q ss_pred cchhcccchhcCCC---CCCcEEEeccCCC-CcceEecCCCccCCCcccccCCcCC-ceEEEEEEeecCCCC---ceEEE Q FBpp0290327 35 ALAEYTLTDIMNNN---QFAGIEFGEAEDG-FPAFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKG---GYLFS 106 (1008) Q Consensus 35 ~l~e~dL~~l~~~~---~~~GV~~v~G~d~-~pAyrf~~~a~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~---g~Lfs 106 (1008) .++.|||+++++.+ .+.||++++|++. ++||+|.+.+++.+|++++||++|| ||||++|||+.+.+. |+||+ T Consensus 30 ~~~~~Dll~~l~l~~~~~~~gv~~v~G~~~~~~ay~~~~~a~l~~pt~~~fP~~lp~eFsi~~tlr~~~~~~~~~~~Lfs 109 (245) T 2uur_A 30 DLPGFDLISQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQ 109 (245) T ss_dssp CCCEEEHHHHTTHHHHHTTTSSCEEECSSTTCEEEEECSSCCCEEEHHHHCTTCCCSSEEEEEEEECCGGGGGCEEEEEE T ss_pred CCCCcceeHhhCCCCcCCCCCeeEccCCCCCccEEEECCCcccCcchHHhccccCCCCEEEEEEEEccCCCCCCceEEEE Confidence 34455555555444 3799999999875 8999999999999999999999999 999999999865444 59999 Q ss_pred EEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeee--ccCCCCeeEEEEEEeCCeEEEEEcCccceeeec Q FBpp0290327 107 VVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGV--AHVPDKWNSIALQVLSDKVSFYYDCELRNTTLV 184 (1008) Q Consensus 107 V~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v--~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l 184 (1008) |+++ ++.+||+|++++. ++.|.|+|++.++.. +.++|.+ +++|++||||+|+|++++|+|||||+++.++.+ T Consensus 110 i~~~-~~~~qlgl~l~~~---~~~v~~~y~~~~G~~--~~~~F~~~~~l~dg~WH~lalsV~~~~VtLyvDC~~~~~~~l 183 (245) T 2uur_A 110 IQDS-SGKEQVGIKINGQ---TQSVVFSYKGLDGSL--QTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPI 183 (245) T ss_dssp EECT-TSCEEEEEEEEGG---GTEEEEEEEBTTSCE--EEEEECCCGGGCSSSCEEEEEEEETTEEEEEETTEEEEEEEC T ss_pred EEcC-CCCEEEEEEEcCC---CCEEEEEEECCCCCE--EEEEECCCCccCCCCEEEEEEEEECCEEEEEEeCCcCccccc Confidence 9997 6799999999986 567999999865433 6789965 999999999999999999999999999999999 Q ss_pred cCCCceeeccCCceEEEEecccccCC-ceeeeeeeeEEecCcccc-cccCCCCCCC Q FBpp0290327 185 TREPIELVFDSASTLYIGQAGSIIGG-KFEGYLEKINVYGNPDAI-NVTCMPPPKA 238 (1008) Q Consensus 185 ~r~~~~l~~~~~~~l~IGq~g~~~~~-~F~G~LQ~l~i~~dp~~a-~~~C~~~~~~ 238 (1008) ++. . .++.++.++||++.. .++ .|+|+||+|+|+||++++ +++|++++.+ T Consensus 184 ~~~-~--~l~~~g~~~lG~~~~-~~~~~f~G~lQ~l~i~~~p~~a~~~~C~e~~~~ 235 (245) T 2uur_A 184 KPR-G--PIDIDGFAVLGKLAD-NPQVSVPFELQWMLIHCDPLRPRRETCHELPAR 235 (245) T ss_dssp CCB-C--CCCCSSEEEEEEESS-CTTCBCCEEEEEEEEESCTTGGGGCCCTTCC-- T ss_pred cCC-C--ccCcCCEEEEEeccC-CCCCeEEEEEEEEEEEcCCCchhhCccccCCCC Confidence 863 2 345678999999953 455 899999999999999998 9999998853No 4>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Probab=100.00 E-value=1.4e-32 Score=290.49 Aligned_cols=194 Identities=16% Similarity=0.190 Sum_probs=161.8 Q ss_pred ccchhcccchhcCCCC-CCcEEEeccCCC-CcceEecCCCccCCCcccccCCc-----CC-ceEEEEEEeecCCCCceEE Q FBpp0290327 34 DALAEYTLTDIMNNNQ-FAGIEFGEAEDG-FPAFRFLQTADVKSPYRMLLPEK-----LY-EFAILITFRQSSLKGGYLF 105 (1008) Q Consensus 34 D~l~e~dL~~l~~~~~-~~GV~~v~G~d~-~pAyrf~~~a~l~~pt~~~fP~~-----~~-eFSilaTlR~~~~~~g~Lf 105 (1008) |+++.|||+++++.+. +.||++++|++. ++||+|.+.+++.+|++++||+. |+ ||||++|||+.+++.++|| T Consensus 2 ~d~~~~Dll~~~~l~~~~~gv~~~~G~~~~~~ay~~~~~a~l~~~t~~~~P~~~~~l~~~~~Fsi~~tlr~~~~~~~~L~ 81 (209) T 2erf_A 2 GDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLL 81 (209) T ss_dssp CTTCEEEHHHHHTTTTSCSSEEEECCSSTTSCEEEESCGGGSCCCCHHHHHHHHHHHHHHTEEEEEEEEEECTTCEEEEE T ss_pred CCcceeeehhhhCCCCccCceEEeeCCCCCccEEEEecccccccCchHhccchhhhhcCCCcEEEEEEEEeCCCCCeEEE Confidence 5677788888888776 789999999886 99999999999999999999999 88 9999999999999999999 Q ss_pred EEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe-eeccCCCCeeEEEEEEeCCeEEEEEcCccceeeec Q FBpp0290327 106 SVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLV 184 (1008) Q Consensus 106 sV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l 184 (1008) +|+++.+..+||+|++++. .++|.|+|++.+ .++.++| .++++|++||||+|+|++++|+|||||+++.++.+ T Consensus 82 si~~~~~~~~~lgl~l~~~---~~~l~~~y~~~g---~~~~~~f~~~~l~dg~WH~lal~V~~~~V~LyvDC~~~~~~~l 155 (209) T 2erf_A 82 ALERKDHSGQVFSVVSNGK---AGTLDLSLTVQG---KQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAEL 155 (209) T ss_dssp EEEETTSSCEEEEEEEETT---TTEEEEEEEETT---EEEEEEESSCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEEC T ss_pred EEECCCCCEEEEEEEEeCC---CcEEEEEEecCC---CEEEEEEcCccccCCcEEEEEEEEECCEEEEEECCcccceeEc Confidence 9999855557899999986 457999999743 3466788 59999999999999999999999999999999999 Q ss_pred cCCCceeeccCCceEEEEecccc--cCCceeeeeeeeEEecCcccc---cccCCC Q FBpp0290327 185 TREPIELVFDSASTLYIGQAGSI--IGGKFEGYLEKINVYGNPDAI---NVTCMP 234 (1008) Q Consensus 185 ~r~~~~l~~~~~~~l~IGq~g~~--~~~~F~G~LQ~l~i~~dp~~a---~~~C~~ 234 (1008) ++.. ...++.+..+++|++... ..++|+|+||+|+|+++++++ +..||+ T Consensus 156 ~~~~-~~~~~~g~~~~~G~~~~~~g~~~~F~G~iq~l~i~~~~~~~~~~~~~~c~ 209 (209) T 2erf_A 156 DVPI-QSVFTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS 209 (209) T ss_dssp SSCG-GGTCCTTHHHHEEEEESCCTTTCBCCEEEEEEEEECSCCHHHHHHTTCCC T ss_pred CCcc-ccccCCCCeeeEEEEecCCCCcccceEEeeEEEEEeCCCHHHhhhhccCC Confidence 8742 222344545567776321 124899999999999999875 566664No 5>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 3hr2_A Probab=99.97 E-value=4.6e-29 Score=313.40 Aligned_cols=32 Identities=44% Similarity=0.767 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q FBpp0290327 653 SGPKGEPGVDSRSSFFGDASYYGRPEPPRQPG 684 (1008) Q Consensus 653 ~G~~G~~G~~g~~~~~g~~~~~G~pgppg~~g 684 (1008) +|+.|++|..+.++..|..+.+|.++++++++ T Consensus 997 ~G~~G~~G~~G~~G~~G~~G~~G~pGppGpPG 1028 (1056) T 3hqv_A 997 PGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPG 1028 (1056) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 33444444444444444444444444444444No 6>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Probab=99.97 E-value=3.2e-31 Score=287.52 Aligned_cols=197 Identities=16% Similarity=0.214 Sum_probs=156.1 Q ss_pred ccchhcccchhcCCCC-CCcEEEeccCCC-CcceEecCCCccCCCcccccCCc---C--C-ceEEEEEEeecCCCCceEE Q FBpp0290327 34 DALAEYTLTDIMNNNQ-FAGIEFGEAEDG-FPAFRFLQTADVKSPYRMLLPEK---L--Y-EFAILITFRQSSLKGGYLF 105 (1008) Q Consensus 34 D~l~e~dL~~l~~~~~-~~GV~~v~G~d~-~pAyrf~~~a~l~~pt~~~fP~~---~--~-eFSilaTlR~~~~~~g~Lf 105 (1008) |+.+.|||+++++.+. +.||++++|.+. ++||+|.+.+.+..+++++||.+ | + ||||++|||+.++++|||| T Consensus 12 ~d~~~~DLl~~lgl~~~~~GV~~~~G~~~~~~Ay~~~~~~~~~~~t~~~~P~g~~~~~~p~eFsi~~tlr~~~~~~~~Lf 91 (251) T 1za4_A 12 GDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLL 91 (251) T ss_dssp ---CEEEHHHHHCCCCTTSSEEEECCSSTTSCEEEESCGGGSCCCCHHHHHHHHHHHHHHTEEEEEEEEEECTTCEEEEE T ss_pred CcccCcceehhhCCCCccCCeEEccCCCCCccEEEEcCcccccCChhHhCcchhhccCCCCcEEEEEEEEecCCCCcEEE Confidence 4577788888888876 689999999886 99999999999999999999994 8 8 9999999999999999999 Q ss_pred EEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe-eeccCCCCeeEEEEEEeCCeEEEEEcCccceeeec Q FBpp0290327 106 SVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLV 184 (1008) Q Consensus 106 sV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l 184 (1008) +|+++.+..++|+|+|++. .++|.|+|++.+ .+++++| .++++|++||||+|+|++++|+|||||+++.++.+ T Consensus 92 si~d~~~~~q~lgv~l~g~---~~~l~~~y~~~G---~~~~~~f~~~~L~dg~WH~lalsV~~~~VtLyvDC~~~~~~~l 165 (251) T 1za4_A 92 ALERKDHSGQVFSVVSNGK---AGTLDLSLTVQG---KQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAEL 165 (251) T ss_dssp EEEETTSSCEEEEEEEETT---TTEEEEEEEETT---EEEEEEESSCCCCSSSCEEEEEEEETTEEEEEETTSCCEEEEC T ss_pred EEEcCCCCEEEEEEEEeCC---CcEEEEEEecCC---CEEEEEEeccccCCCcEEEEEEEEECCEEEEEECCcccccccc Confidence 9999865555689999986 457999999843 3467788 59999999999999999999999999999999988 Q ss_pred cCCCceeeccCCceEEEEeccc--ccCCceeeeeeeeEE--ecCcccc-cccCCCCCC Q FBpp0290327 185 TREPIELVFDSASTLYIGQAGS--IIGGKFEGYLEKINV--YGNPDAI-NVTCMPPPK 237 (1008) Q Consensus 185 ~r~~~~l~~~~~~~l~IGq~g~--~~~~~F~G~LQ~l~i--~~dp~~a-~~~C~~~~~ 237 (1008) ++....+ +..+..++.+.+.. ...+.|+|+||+|+| +|+++++ ++.||+++. T Consensus 166 ~~~~~~~-~~~G~~~~g~~~~~~g~~~~~f~G~lq~L~Iv~~~d~~~a~~~~~Ce~~~ 222 (251) T 1za4_A 166 DVPIQSV-FTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSST 222 (251) T ss_dssp SSCGGGT-SCTTGGGTEEEEESCCSTTCBCCEEEEEEEEECSCCHHHHHHHTTCC--- T ss_pred cCCcccc-cCCCcEEEEEEEecCCCCccceEEEEEEEEEEccCChhhhccccCCCCCC Confidence 8742233 33443333333211 113589999999999 7888776 566777664No 7>3hqv_B Collagen alpha-2(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 3hr2_B Probab=99.97 E-value=1.1e-28 Score=309.46 Aligned_cols=9 Identities=56% Similarity=1.261 Sum_probs=3.3 Q ss_pred CCCCCCCCC Q FBpp0290327 675 GRPEPPRQP 683 (1008) Q Consensus 675 G~pgppg~~ 683 (1008) |.+++++++ T Consensus 1014 G~pGppGpP 1022 (1028) T 3hqv_B 1014 GPPGPPGPP 1022 (1028) T ss_pred CCCCCCCCC Confidence 333333333No 8>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A Probab=99.54 E-value=3.4e-15 Score=123.16 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=50.9 Q ss_pred CceeEecchhhHhhccCCCCCCceeeecccceEEEEEcCCceEeccCccccCC Q FBpp0290327 716 PGAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIA 768 (1008) Q Consensus 716 pgv~t~~n~~~m~~~s~~s~eGtlaYi~~~~~l~vrv~~g~~~I~lg~~~p~~ 768 (1008) .++++|+|+++|+++++..+||||+|++|+++|||||+||||+|+|+.++|++ T Consensus 3 ~gv~~~~t~~~ml~~~~~~~eGtL~yv~d~~eLyiRVr~Gwr~V~Lg~~~pip 55 (56) T 3hsh_A 3 SGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGFRKVQLEARTPLP 55 (56) T ss_dssp CCEEEESSHHHHHHHGGGSCTTCEEEETTTTEEEEEETTEEEEECEEEEEECC T ss_pred CcEEEEecHHHHHhhCccCCCeEEEEEEecceEEEEEcCcEEEEeecccccCC Confidence 36899999999999999999999999999999999999999999999999986No 9>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens} Probab=99.54 E-value=5.2e-15 Score=121.33 Aligned_cols=52 Identities=35% Similarity=0.742 Sum_probs=49.7 Q ss_pred ceeEecchhhHhhccCCCCCCceeeecccceEEEEEcCCceEeccCccccCC Q FBpp0290327 717 GAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIA 768 (1008) Q Consensus 717 gv~t~~n~~~m~~~s~~s~eGtlaYi~~~~~l~vrv~~g~~~I~lg~~~p~~ 768 (1008) ++++|+|+++|+++++..+||||+|++|+++|||||+||||+|+||+++|++ T Consensus 2 ~v~~~~t~~~M~~~~~~~~eGtL~yv~d~~eLyiRVr~Gwr~V~Lg~~ip~p 53 (54) T 3n3f_A 2 LVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIP 53 (54) T ss_dssp CEEEESSHHHHHTTGGGSCTTEEEEETTTTEEEEEETTEEEECCCCCCCCCC T ss_pred CcEEEecHHHHHhhCccCCCeEEEEEEecceEEEEEcCceeeeeecccccCC Confidence 4789999999999999999999999999999999999999999999999874No 10>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3sh5_A Probab=98.92 E-value=2e-08 Score=103.77 Aligned_cols=151 Identities=12% Similarity=0.089 Sum_probs=101.2 Q ss_pred CcceEecCCCccCCCcccccCCc-CC-ceEEEEEEeecCCCCceEEEEEec----CCCeeEEEEEEcccccCceeEEEEE Q FBpp0290327 62 FPAFRFLQTADVKSPYRMLLPEK-LY-EFAILITFRQSSLKGGYLFSVVNP----LDTVVQLGVHLSPVVKNSYNVSLVY 135 (1008) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~-~~-eFSilaTlR~~~~~~g~LfsV~~~----~~~~~qlgL~ls~~~~~~~~i~l~Y 135 (1008) ..+..|...+.+..|... |+.. .. +|+|.+.||.... .+.||.+.+. .....+|.|+|..- .|.|.| T Consensus 5 ~~~~~F~g~sy~~~~~~~-~~~~~~~~~~~is~~frT~~~-~Glll~~~~~~~~~~~~~d~~~l~l~~G-----~l~~~~ 77 (195) T 3sh4_A 5 QYGAYFHDDGFLAFPGHV-FSRSLPEVPETIELEVRTSTA-SGLLLWQGVEVGEAGQGKDFISLGLQDG-----HLVFRY 77 (195) T ss_dssp TTEEEEEEEEEEEECGGG-GCCCSTTCCEEEEEEEEECCS-SEEEEEECCCTTCTTSTTCEEEEEEETT-----EEEEEE T ss_pred ccccEECCCceEEECccc-ccccccCCCcEEEEEEEeCCC-CeEEEEccCcccCCCCCCCeEEEEEECC-----EEEEEE Confidence 345667655566656543 3433 24 8999999997654 4688876541 23457888888654 277777 Q ss_pred EecccccceeeeEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc-------c Q FBpp0290327 136 TQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------I 208 (1008) Q Consensus 136 ~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~ 208 (1008) ....+. ..+.....+.|++||+|+|...+..++|||||....+...+..... ++....||||..... . T Consensus 78 ~~g~g~---~~i~s~~~l~Dg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~--l~~~~~l~iGG~~~~~~~~~~~~ 152 (195) T 3sh4_A 78 QLGSGE---ARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVA--VNAKGSVYIGGAPDVATLTGGRF 152 (195) T ss_dssp ECSSCE---EEEEEEEECCSSSCEEEEEEEETTEEEEEETTCCCEEEECCSSCCC--CCCCSCEEESCCTTHHHHTTTSC T ss_pred ECCCCE---EEEEcCCeecCCCeEEEEEEEeCCEEEEEECCcceeeEECCCccce--ecCCCCEEECCCCCccccccccc Confidence 644321 2233467888999999999999999999999998766544432222 334578999876221 1 Q ss_pred CCceeeeeeeeEEecC Q FBpp0290327 209 GGKFEGYLEKINVYGN 224 (1008) Q Consensus 209 ~~~F~G~LQ~l~i~~d 224 (1008) ...|+|-|++|+|.-. T Consensus 153 ~~~F~GCi~~v~i~~~ 168 (195) T 3sh4_A 153 SSGITGCVKNLVLHSA 168 (195) T ss_dssp CCCCSEEEEEEEEEEC T ss_pred cCCcEEEeeEEEECCc Confidence 3469999999999643No 11>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3v65_A Probab=98.91 E-value=3.6e-08 Score=101.48 Aligned_cols=152 Identities=14% Similarity=0.188 Sum_probs=100.4 Q ss_pred cceEecCCCccCCCccc-------ccCCc-CC-ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEE Q FBpp0290327 63 PAFRFLQTADVKSPYRM-------LLPEK-LY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSL 133 (1008) Q Consensus 63 pAyrf~~~a~l~~pt~~-------~fP~~-~~-eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l 133 (1008) .|+.|...+.+..+... .||.. .. +|+|.+.||... ..+.||...+..+...+|.|+|..- .|.| T Consensus 3 ~~~~F~G~syv~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~-~~glll~~~~~~~~~~~~~l~l~~G-----~l~~ 76 (191) T 3v64_A 3 ETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEA-TQGLVLWIGKAAERADYMALAIVDG-----HLQL 76 (191) T ss_dssp CEEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSC-SSEEEEEESCCSTTCCEEEEEEETT-----EEEE T ss_pred cceeECCceeEEecCccccccccccCcccccccceEEEEEEEeCC-CCeEEEEeCCCCCCCCEEEEEEECC-----EEEE Confidence 45666555554444322 23332 34 899999999765 4468776655333567888888643 3777 Q ss_pred EEEecccccceeeeEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc------ Q FBpp0290327 134 VYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI------ 207 (1008) Q Consensus 134 ~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~------ 207 (1008) .|...++. ..+.....+.|++||+|+|...+..++||||+....+...+.....+ +....+|||..... T Consensus 77 ~~~~g~~~---~~~~~~~~v~Dg~WH~V~v~~~~~~~~L~vD~~~~~~~~~~~~~~~l--~~~~~l~iGg~~~~~~~~~~ 151 (191) T 3v64_A 77 SYDLGSQP---VVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQL--DTDGALWLGGLQKLPVGQAL 151 (191) T ss_dssp EEESSSCC---EEEEEEEECTTSSCEEEEEEEETTEEEEEETTSCCEEEECCTTCCCE--EECSEEEESCCSSCCSSCCS T ss_pred EEECCCCc---EEEEeCCEecCCCcEEEEEEEEccEEEEEECCcceEeeECCCCcccC--cCCCCEEECCCCcccccccc Confidence 77654321 22334577889999999999999999999999877665443322233 23568999976321 Q ss_pred ---cCCceeeeeeeeEEecCc Q FBpp0290327 208 ---IGGKFEGYLEKINVYGNP 225 (1008) Q Consensus 208 ---~~~~F~G~LQ~l~i~~dp 225 (1008) ....|.|-|++|+|...+ T Consensus 152 ~~~~~~~F~Gci~~v~i~~~~ 172 (191) T 3v64_A 152 PKAYGTGFVGCLRDVVVGHRQ 172 (191) T ss_dssp CGGGTSBCEEEEEEEEETTEE T ss_pred cccccCCCeEEeeEEEECCEE Confidence 134699999999996543No 12>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} SCOP: b.29.1.0 Probab=98.81 E-value=1.1e-07 Score=97.81 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=97.7 Q ss_pred ceEecCCCccCCCcccccCCcCC-ceEEEEEEeecCCCCceEEEEEec-CCCeeEEEEEEcccccCceeEEEEEEecccc Q FBpp0290327 64 AFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNP-LDTVVQLGVHLSPVVKNSYNVSLVYTQADQN 141 (1008) Q Consensus 64 Ayrf~~~a~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~LfsV~~~-~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~ 141 (1008) +..|...+.+..+....++..+. +|+|.+.||.... .+.||...+. .....++.|+|..- .|.|.|....+ T Consensus 11 ~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~~-~GlLl~~~~~~~~~~d~~~l~l~~G-----~l~~~~~~g~~- 83 (189) T 3pve_A 11 LADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGP-SGLLLYNGQKTDGKGDFVSLALHNR-----HLEFRYDLGKG- 83 (189) T ss_dssp CEEEESSCEEEECCGGGC-------CEEEEEEEESSS-CEEEEEEESCC-CCSCEEEEEEETT-----EEEEEEESSSC- T ss_pred eeEECCCceEEEcCcccccccccceEEEEEEEecCCC-CeEEEEecCCCCCCCCeEEEEEECC-----EEEEEEECCCC- Confidence 45666666666666665555555 8999999998754 4688877753 13356888888654 37777764332 Q ss_pred cceeeeEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc--------cCCcee Q FBpp0290327 142 IGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--------IGGKFE 213 (1008) Q Consensus 142 ~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--------~~~~F~ 213 (1008) ...+.....+.|++||+|+|...+..++||||+....+...+.....+ +....+|||..... ....|. T Consensus 84 --~~~~~s~~~v~Dg~WH~V~v~~~~~~~~L~vD~~~~~~~~~~~~~~~l--~~~~~l~iGG~~~~~~~~~~~~~~~~F~ 159 (189) T 3pve_A 84 --AAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTML--NLKEPLYVGGAPDFSKLARGAAVASGFD 159 (189) T ss_dssp --EEEEECSSCCCTTSEEEEEEEEETTEEEEEETTSCCEEEECCSSCCCC--CCCSCEEESCCSCGGGSCGGGCCCSBCE T ss_pred --eEEEeCCCcccCCCeEEEEEEEeCCEEEEEECCCceeeeEcCCCccee--cCCCCEEECccCChhhcccccccCCCCe Confidence 122233567889999999999999999999999876554443222223 33467999875211 235699 Q ss_pred eeeeeeEEecC Q FBpp0290327 214 GYLEKINVYGN 224 (1008) Q Consensus 214 G~LQ~l~i~~d 224 (1008) |-|++|+|... T Consensus 160 GCi~~v~i~~~ 170 (189) T 3pve_A 160 GAIQLVSLRGH 170 (189) T ss_dssp EEEEEEEETTE T ss_pred EEeeEEEECCE Confidence 99999998644No 13>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Probab=98.81 E-value=9.8e-08 Score=99.56 Aligned_cols=126 Identities=13% Similarity=0.174 Sum_probs=87.4 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) +|+|.+.||.... .+.||...+..+...+|.|+|..- .|.|.|...++. ..+.....+.|++||+|+|... T Consensus 49 ~~~is~~frT~~~-~GlLl~~~~~~~~~d~~~l~l~~G-----~l~~~~~~g~g~---~~l~s~~~v~Dg~WH~V~v~~~ 119 (204) T 1pz7_A 49 SNHFELSIKTEAT-QGLILWSGKGLERSDYIALAIVDG-----FVQMMYDLGSKP---VVLRSTVPINTNHWTHIKAYRV 119 (204) T ss_dssp EEEEEEEEEECCS-SEEEEEESCCSTTCCEEEEEEETT-----EEEEEEESSSCC---EEEEEEEECCSSSCEEEEEEEE T ss_pred ceEEEEEEEeCCC-CeEEEEecCCCCCCceEEEEEECC-----EEEEEEECCCCe---EEEECCccccCCCcEEEEEEEE Confidence 7999999997654 567776655323567888888754 277777543322 2233467888999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc---------cCCceeeeeeeeEEec Q FBpp0290327 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI---------IGGKFEGYLEKINVYG 223 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~---------~~~~F~G~LQ~l~i~~ 223 (1008) +..++||||+....+...+.....+ +....+|||..... ....|.|-|++|+|.. T Consensus 120 ~~~~~L~VD~~~~~~~~~~~~~~~l--~~~~~l~lGG~~~~~~~~~~~~~~~~~F~GCi~~v~in~ 183 (204) T 1pz7_A 120 QREGSLQVGNEAPITGSSPLGATQL--DTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDR 183 (204) T ss_dssp TTEEEEEETTSCCEEEECCSSCCCE--EECCEEEESSCSCCSTTTTSCGGGGSBCEEEEEEEEETT T ss_pred eCEEEEEECCeeeEeeecCCCccee--cCCCCEEECCCCccccccccccccCCCCeEEEeEEEECC Confidence 9999999999887554433322233 23568999875221 1246999999999943No 14>4pbp_A C-reactive protein; acute phase protein, pentraxin; 1.65A {Danio rerio} PDB: 4pbo_A Probab=98.77 E-value=1.2e-07 Score=98.80 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=102.1 Q ss_pred EEeccCCCCcceEecCC---CccCCCcccccCCcCCceEEEEEEeecCC--CCceEEEEEecCCCeeEEEEEEcccccCc Q FBpp0290327 54 EFGEAEDGFPAFRFLQT---ADVKSPYRMLLPEKLYEFAILITFRQSSL--KGGYLFSVVNPLDTVVQLGVHLSPVVKNS 128 (1008) Q Consensus 54 ~~v~G~d~~pAyrf~~~---a~l~~pt~~~fP~~~~eFSilaTlR~~~~--~~g~LfsV~~~~~~~~qlgL~ls~~~~~~ 128 (1008) +++.|.. ..|+.|... +.+..+....+ ...+|||.+++|+... ....||+..+... . .|.|.++.. T Consensus 2 ~~~~g~~-g~al~F~g~s~~~~v~~~~~~~~--~~~~fTi~~Wvk~~~~~~~~~~i~s~~~~~~-~-~~~l~~~~~---- 72 (210) T 4pbp_A 2 EFFKNLS-GKVLQFKTATDNSYVKLYPEKPL--SLSAFTLCMRVATELPLDREVILFAYYTPDV-D-ELNVWRERD---- 72 (210) T ss_dssp ---CCCT-TEEEEECSCCSSCEEEEECSSCC--CBSEEEEEEEEECCSCTTSCEEEEEEEETTE-E-EEEEEECTT---- T ss_pred eeeeccc-CcEEECCCCCccCeEEEcCCCCC--CcCCEEEEEEEEcCCCCCCCceEEEEEcCCC-C-cEEEEEcCC---- Confidence 4454443 367888654 33444332211 1229999999999766 4578999887532 2 666666532 Q ss_pred eeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeccCCceEEEEeccc Q FBpp0290327 129 YNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS 206 (1008) Q Consensus 129 ~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~ 206 (1008) ..+.|.....+. .+.+...+.+++||+|++.+.+. .++||||.+++.+..+... ..+.....++||+... T Consensus 73 ~~~~~~~~~~~~-----~~~~~~~~~~~~W~hva~t~d~~~g~~~lYvnG~~~~~~~~~~~---~~~~~~~~l~iG~~~~ 144 (210) T 4pbp_A 73 GRVSLYIQSSKD-----AAFFRLPPLSTLQTHLCVAWESATGLTAFWMDGRRSLHQVYRKG---YSIRSGGTVVLGQDPD 144 (210) T ss_dssp SCEEEEESCSSC-----CEEECCCCCCSSCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCS T ss_pred CcEEEEEEcCCc-----eEEecCcccCCCEEEEEEEEECCCCcEEEEECCeEccCcccCCC---cEECCCCeEEEccccc Confidence 235565533221 12455677899999999999976 8999999999887544321 1234567899998632 Q ss_pred c------cCCceeeeeeeeEEecCcccc Q FBpp0290327 207 I------IGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 207 ~------~~~~F~G~LQ~l~i~~dp~~a 228 (1008) . ....|.|.|.+|+|+..+..+ T Consensus 145 ~~gg~~~~~~~f~G~idevri~~~aLs~ 172 (210) T 4pbp_A 145 SYVGSFDVDQSFVGEIANLQMWDYVLSS 172 (210) T ss_dssp BTTBCCCGGGCCCEEEEEEEEESSCCCH T ss_pred cCCCccCccccceEEecceEEecccCCH Confidence 1 235799999999999987443No 15>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Probab=98.70 E-value=3.8e-07 Score=95.28 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=103.4 Q ss_pred CcceEecCC---CccCCCcccccCCcCCceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEec Q FBpp0290327 62 FPAFRFLQT---ADVKSPYRMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQA 138 (1008) Q Consensus 62 ~pAyrf~~~---a~l~~pt~~~fP~~~~eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~ 138 (1008) ..|+.|... +.+..+....|+ ...+|||.+++|+.......||+..+. .....|.|.+.........+.|+. . T Consensus 6 ~~al~F~G~s~~~yv~~~~~~~l~-~~~~fTi~~Wvk~~~~~~~~i~s~~~~-~~~~~~~l~~~~~~~~~~~~~~~~--~ 81 (217) T 3flp_A 6 DVKISFPGTQNPKFPHLRFMQTLP-AVRQLTVCQRIKPFHRNTGYIFSCATS-NQDNQFITSMYVKSDGTLNLGLQV--N 81 (217) T ss_dssp GEEEEECCCBTTBCCEEEESSCBC-CBSEEEEEEEEEESCSSCEEEEEEEET-TEEEEEEEEEEECTTSEEEEEEEE--T T ss_pred CeEEECCCCCccCeEEeccCCCCC-CcCeEEEEEEEEeCCCCCcEEEEEECC-CCCCeEEEEEccCCCcceEEEEEE--C Confidence 467888653 445555543343 123999999999877556679998875 334566666654322222344444 2 Q ss_pred ccccceeeeEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeee-ccCCCceeeccCCceEEEEecccc------cC Q FBpp0290327 139 DQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTL-VTREPIELVFDSASTLYIGQAGSI------IG 209 (1008) Q Consensus 139 ~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~--~VtLyVDC~~~~t~~-l~r~~~~l~~~~~~~l~IGq~g~~------~~ 209 (1008) +.. ...+.....+.+++||+|++...+. .++||||.+++.+.. +... ..+.....++||+.... .. T Consensus 82 g~~--~~~~~~~~~~~~~~W~hva~t~d~~~g~~~lYvnG~~~~~~~~~~~~---~~~~~~~~l~iG~~~~~~gg~~~~~ 156 (217) T 3flp_A 82 ASS--NKYISCPIEIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKG---HQISAGGTVVIGQEQDKIGGGFEEQ 156 (217) T ss_dssp TCC--CEEEEEEEECCTTSCEEEEEEEETTTTEEEEEETTEEEEEESCSSTT---CCBCSCBEEEESSCCSBTTBCCCGG T ss_pred Ccc--ceEEecCCccCCCCEEEEEEEEECCCCeEEEEECCEEcccccccCcC---cEeCCCCeEEECcccccCCCCcCcC Confidence 321 1223345677899999999999976 899999999987732 2221 12345678999987321 23 Q ss_pred CceeeeeeeeEEecCcccc Q FBpp0290327 210 GKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 210 ~~F~G~LQ~l~i~~dp~~a 228 (1008) ..|.|.|.+|+|+..+..+ T Consensus 157 ~~f~G~idevri~~~aLs~ 175 (217) T 3flp_A 157 ESWSGELSDLQVWDEALTT 175 (217) T ss_dssp GCCCEEEEEEEEESSCCCH T ss_pred CCceEEeeeEEEECccCCH Confidence 5799999999999987544No 16>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} SCOP: b.29.1.4 Probab=98.69 E-value=3.3e-07 Score=93.82 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=91.5 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeE-eeeccCCCCeeEEEEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS-FGVAHVPDKWNSIALQV 165 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~s-F~v~l~dg~WHrlaLsV 165 (1008) .|+|.+.||... ..+.||..- +...+|.|+|..- .|.|.|....+.. ...+. -...+.|++||+|+|.. T Consensus 29 ~~~i~l~frT~~-~~GlLl~~~---~~~d~~~l~l~~G-----~l~~~~~~g~g~~-~~~~~~~~~~l~Dg~WH~V~v~~ 98 (184) T 2h0b_A 29 SDEITLSFKTLQ-RNGLMLHTG---KSADYVNLALKNG-----AVSLVINLGSGAF-EALVEPVNGKFNDNAWHDVKVTR 98 (184) T ss_dssp EEEEEEEEEESC-SCEEEEEEC---CTTEEEEEEEETT-----EEEEEEEESSCEE-EEEECCSSSCSSSSSCEEEEEEE T ss_pred ccEEEEEEEeCC-CCEEEEEec---CCCCEEEEEEECC-----EEEEEEECCCCeE-EEEEccCCCcccCCCeEEEEEEE Confidence 799999999865 456887652 3567888888654 2777776533211 11111 24578899999999999 Q ss_pred eCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc-------cCCceeeeeeeeEEecCc------ccccccC Q FBpp0290327 166 LSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------IGGKFEGYLEKINVYGNP------DAINVTC 232 (1008) Q Consensus 166 ~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~~~~F~G~LQ~l~i~~dp------~~a~~~C 232 (1008) .+..++||||+....+.........+ +....+|||-.... ....|.|-|++|+|...+ +.+...| T Consensus 99 ~~~~~~L~VD~~~~~~~~~~~~~~~l--~~~~~l~iGG~~~~~~~~~~~~~~~F~GCi~~v~i~~~~l~~~~~~~a~~~~ 176 (184) T 2h0b_A 99 NLRQVTISVDGILTTTGYTQEDYTML--GSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGD 176 (184) T ss_dssp ETTEEEEEETTTEEEEEECSTTCCCE--EECSEEEESCCTTGGGSTTCSCCCBCEEEEEEEEEEESSCEECHHHHHHHCC T ss_pred eCCEEEEEECCeeeeeeeCCCCceee--cCCCCEEECCCCccccccCCcccCCCEEEeeEEEECCEEccccHHHHHhhcC Confidence 99999999999987654443222223 23567999876321 124699999999997654 3345566 Q ss_pred CC Q FBpp0290327 233 MP 234 (1008) Q Consensus 233 ~~ 234 (1008) +. T Consensus 177 ~~ 178 (184) T 2h0b_A 177 PK 178 (184) T ss_dssp TT T ss_pred Cc Confidence 54No 17>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Probab=98.68 E-value=3.4e-07 Score=93.81 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=88.7 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) .|+|.+.||... ..+.||.+.+. +...+|.|+|..- .|.|.|....+. ..+.....+.|++||+|.|... T Consensus 28 ~~~isl~frT~~-~~GlLl~~~~~-~~~d~l~l~L~~G-----~l~~~~~~g~~~---~~~~~~~~l~Dg~WH~V~v~~~ 97 (182) T 2r16_A 28 AEDVSLRFRSQR-AYGILMATTSR-DSADTLRLELDAG-----RVKLTVNLGKGP---ETLFAGYNLNDNEWHTVRVVRR 97 (182) T ss_dssp EEEEEEEEECSC-SSEEEEEEECS-SSCCEEEEEEETT-----EEEEEEESSSCC---EEEEECSSCCSSSCEEEEEEEE T ss_pred ccEEEEEEEeCC-CCEEEEEcCCC-CCCCEEEEEEECC-----EEEEEEEcCCcc---eEeccCCcccCCCcEEEEEEEE Confidence 789999999764 56799988874 4467888888654 377777643322 2233457888999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeccCCceEEEEeccc-----ccCCceeeeeeeeEEecCc Q FBpp0290327 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS-----IIGGKFEGYLEKINVYGNP 225 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~-----~~~~~F~G~LQ~l~i~~dp 225 (1008) +..++|+||+....+.........+.++ .+|||-... .....|.|-|++|+|-..+ T Consensus 98 ~~~~~L~VD~~~~~~~~~~~~~~~l~~~---~l~~Gg~~~~~~~~~~~~~F~GCi~~v~in~~~ 158 (182) T 2r16_A 98 GKSLKLTVDDQQAMTGQMAGDHTRLEFH---NIETGIITERRYLSSVPSNFIGHLQSLTFNGMA 158 (182) T ss_dssp TTEEEEEETTCCEEEEECCSSCCCEEEE---EEEESSCCCCTTCSSCCCCCEEEEEEEEETTEE T ss_pred CCEEEEEEeCCceeeEEcCCCCcEEEec---ceEEcCcccccccCCCCCCCEEEEeEEEECCEE Confidence 9999999999987665454433344443 288875411 1234699999999995443No 18>4avs_A Serum amyloid P-component; sugar binding protein, glycoprotein, disulfide bond, lectin, metal-binding; HET: NAG N7P; 1.40A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* 3kqr_A* 4avt_A* 4avv_A* 4ayu_A* Probab=98.61 E-value=8.6e-07 Score=91.90 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=99.1 Q ss_pred CcceEecCCC---ccCCCcccccCCcCCceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEec Q FBpp0290327 62 FPAFRFLQTA---DVKSPYRMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQA 138 (1008) Q Consensus 62 ~pAyrf~~~a---~l~~pt~~~fP~~~~eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~ 138 (1008) ..|+.|.... .+..+.. ++....+|||.+++|+.......||+..+. .....|.|.++.. ..+.|+. . T Consensus 6 G~al~F~g~~~~~yv~~~~~--~~~~~~~fTi~~Wvk~~~~~~~~i~s~~~~-~~~~~~~l~~~~~----~~~~~~~--~ 76 (204) T 4avs_A 6 GKVFVFPRESVTDHVNLITP--LEKPLQNFTLCFRAYSDLSRAYSLFSYNTQ-GRDNELLVYKERV----GEYSLYI--G 76 (204) T ss_dssp TEEEEECSCCSSCEEEECCC--CCSCBSEEEEEEEEECCCCSCEEEEEEEET-TEEEEEEEEEEET----TEEEEEE--T T ss_pred ccEEECCCCCCCCeEEEecC--CCCCccCEEEEEEEEcCCCCCcEEEEEEcC-CCCceEEEEEeCC----CeEEEEE--C Confidence 3567775442 2333321 221222999999999887677789998775 3344566655432 2355554 2 Q ss_pred ccccceeeeEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc------cCC Q FBpp0290327 139 DQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI------IGG 210 (1008) Q Consensus 139 ~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~------~~~ 210 (1008) + ....+...+.+++||+|++...+. .++||||.+++.+..+... ..+.....++||+.... ... T Consensus 77 ~-----~~~~~~~~~~~~~W~Hva~t~d~~~g~~~lYvnG~~~~~~~~~~~---~~~~~~~~l~iG~~~~~~gg~~~~~~ 148 (204) T 4avs_A 77 R-----HKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQG---YFVEAQPKIVLGQEQDSYGGKFDRSQ 148 (204) T ss_dssp T-----EEEEEECCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSSSSCCCCGGG T ss_pred C-----EEEEecccccCCCEEEEEEEEECCCCeEEEEECCeEecccccCCC---ceECCCceEEEcccccccCccccCCc Confidence 2 123455677899999999999976 8999999999887544321 12345678999986321 135 Q ss_pred ceeeeeeeeEEecCcccc Q FBpp0290327 211 KFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 211 ~F~G~LQ~l~i~~dp~~a 228 (1008) .|.|.|.+|+|+..+..+ T Consensus 149 ~f~G~idevri~~~aLs~ 166 (204) T 4avs_A 149 SFVGEIGDLYMWDSVLPP 166 (204) T ss_dssp CCCEEEEEEEEESSCCCH T ss_pred cceEEeceeEEECccCCH Confidence 799999999999987543No 19>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} SCOP: b.29.1.4 PDB: 3vkf_C* 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Probab=98.60 E-value=7.9e-07 Score=90.99 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=87.0 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) .|+|.+.||... ..+.||.+.+......+|.|+|..- .|.|.|....+.. .+......+.|++||+|.|... T Consensus 30 ~~~isl~frT~~-~~GlLl~~~~~~~~~d~l~l~L~~G-----~l~~~~~~g~~~~--~~~~~~~~l~Dg~WH~V~v~r~ 101 (178) T 3bod_A 30 ADRLAIGFSTVQ-KEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDDI--AIEESNAIINDGKYHVVRFTRS 101 (178) T ss_dssp EEEEEEEEECCC-SSEEEEEEEESSSSCCEEEEEEETT-----EEEEEEESSSCCE--EEECCSSCCCSSSCEEEEEEEE T ss_pred CCEEEEEEEECC-CCEEEEEEcCCCCCCCEEEEEEECC-----EEEEEEEcCCCcE--EEecCCcccCCCCcEEEEEEEe Confidence 678888888654 4678888877433457888888654 3778886443211 2212256788999999999999 Q ss_pred CCeEEEEEcCcccee-eeccCCCceeeccCCceEEEEecccccCCceeeeeeeeEEecC Q FBpp0290327 167 SDKVSFYYDCELRNT-TLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGN 224 (1008) Q Consensus 167 g~~VtLyVDC~~~~t-~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~d 224 (1008) +..++|+|||....+ ......... ++....+|||... ....|+|-|++|+|-.. T Consensus 102 ~~~~~L~VD~~~~~~~~~~~~~~~~--l~~~~~l~iGG~~--~~~~F~GCi~~v~in~~ 156 (178) T 3bod_A 102 GGNATLQVDSWPVIERYPAGRQLTI--FNSQATIIIGGKE--QGQPFQGQLSGLYYNGL 156 (178) T ss_dssp TTEEEEEETTSCCEEECCCSCCCCC--BCCEEEEEESCCT--TSCBCCEEEEEEEETTE T ss_pred CCEEEEEECCceeeeEecCCCcceE--ecCCCCEEEeCcc--CCCCCeEEEceEEECCe Confidence 999999999987533 233322222 3345679998762 34679999999998544No 20>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Probab=98.54 E-value=1.4e-06 Score=90.25 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=98.9 Q ss_pred CcceEecCC---CccCCCcccccCCcCCceEEEEEEeecCC--CCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEE Q FBpp0290327 62 FPAFRFLQT---ADVKSPYRMLLPEKLYEFAILITFRQSSL--KGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYT 136 (1008) Q Consensus 62 ~pAyrf~~~---a~l~~pt~~~fP~~~~eFSilaTlR~~~~--~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~ 136 (1008) ..|+.|... ..+..+... +....+|||.+++|+... ....||+..+. .....|.|.++.. ..+.|.. T Consensus 6 g~al~F~g~s~~~yv~~~~~~--~~~~~~fTi~~Wvk~~~~~~~~~~i~s~~~~-~~~~~~~l~~~~~----~~~~~~~- 77 (206) T 3pvn_A 6 RKAFVFPKESDTSYVSLKAPL--TKPLKAFTVCLHFYTELSSTRGYSIFSYATK-RQDNEILIFWSKD----IGYSFTV- 77 (206) T ss_dssp TEEEEECSCCSSCEEEECCCC--CSCBSEEEEEEEEEESGGGTCCEEEEEEEET-TEEEEEEEEEETT----TEEEEEE- T ss_pred CCEEECCCCCccCeEEEcCCC--CCChhcEEEEEEEEeCCCCCCCcEEEEEECC-CCCCEEEEEEeCC----CEEEEEE- Confidence 357777654 223333221 111229999999999764 66789998774 3344566665432 2355544 Q ss_pred ecccccceeeeEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeccCCceEEEEeccc------cc Q FBpp0290327 137 QADQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS------II 208 (1008) Q Consensus 137 ~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~------~~ 208 (1008) .+ ....+...+.+++||+|++...+. .++||||.+++.+..+... ..+.....++||+... .. T Consensus 78 -~~-----~~~~~~~~~~~~~W~hva~t~d~~~g~~~lYvnG~~~~~~~~~~~---~~~~~~~~l~iG~~~~~~gg~~~~ 148 (206) T 3pvn_A 78 -GG-----SEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKG---YTVGAEASIILGQEQDSFGGNFEG 148 (206) T ss_dssp -TT-----EEEEEECSSCCSSCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSBTTBCCCG T ss_pred -CC-----eeeEeecccCCCCcEEEEEEEECCCceEEEEECCcCcccccccCC---ceECCCCEEEEeeccccCCCCccc Confidence 22 123445677899999999999975 8999999999887544322 1234567899998631 12 Q ss_pred CCceeeeeeeeEEecCcccc Q FBpp0290327 209 GGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 209 ~~~F~G~LQ~l~i~~dp~~a 228 (1008) ...|.|.|.+|+|+..+... T Consensus 149 ~~~f~G~idevri~~~aLs~ 168 (206) T 3pvn_A 149 SQSLVGDIGNVNMWDFVLSP 168 (206) T ss_dssp GGCCCEEEEEEEEESSCCCH T ss_pred ccceEEEecceEEEcccCCH Confidence 35799999999999987443No 21>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Probab=98.38 E-value=3.5e-06 Score=97.31 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=87.5 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe-eeccCCCCeeEEEEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQV 165 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV 165 (1008) .+.|.+.||.. ...++||.+.+......+|.|.|..- .|.|.|..... ...+.+ ...+.||+||+|.|.+ T Consensus 250 ~~~isl~frT~-~~~GlLl~~~~~~~~~~~l~l~l~~G-----~l~~~~~~g~~---~~~~~~~~~~l~DG~WH~V~v~~ 320 (410) T 3asi_A 250 ADRLAIGFSTV-QKEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTD---DIAIEESNAIINDGKYHVVRFTR 320 (410) T ss_dssp EEEEEEEEECC-CSEEEEEEEEECTTCCCEEEEEEETT-----EEEEEEESSSS---CEEEECCSCCCCSSSCEEEEEEE T ss_pred ccEEEEEEEec-CCCeEEEEEecCCCCCcEEEEEEeCC-----EEEEEEECCCC---CeEEccCCcCCCCCCeEEEEEEE Confidence 45666777754 45679998877543467888888743 26777754332 122333 5678899999999999 Q ss_pred eCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccccCCceeeeeeeeEEecCc Q FBpp0290327 166 LSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNP 225 (1008) Q Consensus 166 ~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp 225 (1008) .+..++|+|||..+.+....... ...+.....+|||... ....|+|-|++|+|-..+ T Consensus 321 ~~~~~~L~VD~~~~~~~~~~~~~-~~~l~~~~~l~lGg~~--~~~~F~Gci~~v~in~~~ 377 (410) T 3asi_A 321 SGGNATLQVDSWPVIERYPAGRQ-LTIFNSQATIIIGGKE--QGQPFQGQLSGLYYNGLK 377 (410) T ss_dssp ETTEEEEEETTSCCEEECCSSCC-CCCBCCEEEEEESSTT--TTCCCCEEEEEEEETTBC T ss_pred ECCEEEEEECCccceeecCCCcc-cEEecCCceEEEcCCc--CCCCCEEEEEEEEECCHH Confidence 99999999999887653222111 1123456789999762 346799999999996544No 22>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Probab=98.36 E-value=7.1e-06 Score=83.30 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=84.3 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) +|+|.+.||... ..+.||...+. +...+|.|+|..- .|.|.|..... ...+.....+.|++||+|.|... T Consensus 27 ~~~isl~frT~~-~~GlLl~~~~~-~~~d~l~l~L~~G-----~l~~~~~~g~~---~~~~~~~~~v~DG~WH~V~v~~~ 96 (170) T 1d2s_A 27 KTSSSFEVRTWD-PEGVIFYGDTN-PKDDWFMLGLRDG-----RPEIQLHNHWA---QLTVGAGPRLDDGRWHQVEVKME 96 (170) T ss_dssp CCEEEEEEEESC-SSEEEEEEEEE-TTTEEEEEEEETT-----EEEEEEESSSC---EEEEECSCCCCSSSCEEEEEEEE T ss_pred CcEEEEEEEECC-CCEEEEEeCCC-CCCCEEEEEEECC-----EEEEEEECCCc---cEEeeCCCccCCCCCEEEEEEEe Confidence 788889999874 45788887764 3457888888654 27777754331 12222356788999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeccCCceEEEEeccc-------ccCCceeeeeee-eEEecCc Q FBpp0290327 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEK-INVYGNP 225 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~-l~i~~dp 225 (1008) +..++|+||.+...+.... +. . ....+|||-... .....|+|=|++ ++|-..+ T Consensus 97 ~~~~~L~VD~~~~~~~~~~--~g-~---~~~~lylGG~p~~~~~~~~~~~~~F~GCi~~~~~in~~~ 157 (170) T 1d2s_A 97 GDSVLLEVDGEEVLRLRQV--SG-H---PIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQA 157 (170) T ss_dssp TTEEEEEETTEEEEEETTC--CC-C---CEEEEEESSCSSCGGGSSSCCCCCCCEEEEEEEESCGGG T ss_pred CCEEEEEECCeeeeeeccC--CC-C---cCCCEEECCccccccccccCCCCCeeEecccceecCCee Confidence 9999999999876543211 11 1 246799987521 113469999999 7765443No 23>4c1w_A Neuraminidase; sugar binding protein, carbohydrate-binding module, sialic A binding; HET: SLT; 1.84A {Streptococcus pneumoniae} PDB: 4c1x_A* Probab=98.33 E-value=6.4e-06 Score=84.47 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=87.9 Q ss_pred ceEEEEEEeecC--CCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccc-eeeeEeeeccCCCCeeEEEE Q FBpp0290327 87 EFAILITFRQSS--LKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIG-RKLASFGVAHVPDKWNSIAL 163 (1008) Q Consensus 87 eFSilaTlR~~~--~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~-q~~~sF~v~l~dg~WHrlaL 163 (1008) +|||.+++|+.. .....||++.+......+|.|.+... . ..|.+....+... ...++-...+.+++||+|++ T Consensus 34 ~fTv~~Wvk~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~---~--~~~~~~~~~g~~~~~~~~~~~~~~~~g~W~Hva~ 108 (188) T 4c1w_A 34 NATVHMEFKPDAKAPAFYNLFSVSSATKKDEYFTMAVYNN---T--ATLEGRGSDGKQFYNNYNDAPLKVKPGQWNSVTF 108 (188) T ss_dssp SEEEEEEEEECSSCCSEEEEEEEECSSCTTCEEEEEEETT---E--EEEEEECTTCCBSSCCCTTCSCBCCTTSCEEEEE T ss_pred CeEEEEEEECCCCCCCccEEEEccCCcccCceEEEEEeCC---c--cEEEEEECCCCeEeccccccccccCCCCEEEEEE Confidence 999999999976 44457999887543345777777654 1 2344443222110 00011134567999999999 Q ss_pred EEeC-------CeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc--cCCceeeeeeeeEEecCcccc Q FBpp0290327 164 QVLS-------DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--IGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 164 sV~g-------~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--~~~~F~G~LQ~l~i~~dp~~a 228 (1008) ...+ ..++||||.+++.+......+. ..+.....++||+.... ....|.|.|.+|+|+..+..+ T Consensus 109 t~d~~~~~~~~~~~~lYvnG~~~~~~~~~~~~~-~~~~~~~~~~iG~~~~~g~~~~~f~G~idevriy~~aLs~ 181 (188) T 4c1w_A 109 TVEKPTAELPKGRVRLYVNGVLSRTSLRSGNFI-KDMPDVTHVQIGATKRANNTVWGSNLQIRNLTVYNRALTP 181 (188) T ss_dssp EEECCCSSSTTCEEEEEETTEEEEEECSCCCCG-GGCTTCCEEEEESEEETTEEECCCCEEEEEEEEESSCCCH T ss_pred EEeCCcccCCCceEEEEECCEEeeeeeccCCcc-ccCCCCccEEECccccCCCcccccccEEeeEEEECCcCCH Confidence 9999 8999999999987742221111 11223568999986211 123599999999999876543No 24>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Probab=98.32 E-value=1.7e-05 Score=82.49 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=88.9 Q ss_pred CceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEeccccccee-eeEeeeccCCCCeeEEEEE Q FBpp0290327 86 YEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRK-LASFGVAHVPDKWNSIALQ 164 (1008) Q Consensus 86 ~eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~-~~sF~v~l~dg~WHrlaLs 164 (1008) -+|||.+++|+.......||++.+......+|.|.+... ++.|............ .....+.+.+ +||+|++. T Consensus 40 ~~fTvs~Wvk~~~~~~~~lfs~~~~~~~~~~~~l~~~~g-----~l~~~~~~~~~~~~~~~~~~~~~~~~~-~W~Hva~t 113 (191) T 2v73_A 40 EEGTIVTRFNMNDTSIQSLIGLSDGNKANNYFSLYVSGG-----KVGYELRRQEGNGDFNVHHSADVTFNR-GINTLALK 113 (191) T ss_dssp SSEEEEEEEEECCCSCEEEEEEECTTCSSCEEEEEECSS-----EEEEEEEECTTSSCEEEEEEEECCCCS-SCEEEEEE T ss_pred CCEEEEEEEEeCCCCceEEEEecCCCCcCcEEEEEEECC-----EEEEEEEecCCCcceeeecccccccCC-ceEEEEEE Confidence 399999999998755557999987654445677777622 3666665543211111 1112333334 99999999 Q ss_pred EeC-CeEEEEEcCccceeeeccC-CCceeeccCCceEEEEecccc---cCCceeeeeeeeEEecCcccc Q FBpp0290327 165 VLS-DKVSFYYDCELRNTTLVTR-EPIELVFDSASTLYIGQAGSI---IGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 165 V~g-~~VtLyVDC~~~~t~~l~r-~~~~l~~~~~~~l~IGq~g~~---~~~~F~G~LQ~l~i~~dp~~a 228 (1008) ..+ ..++||||-+++.+..... .... .+ ....++||+.... ....|.|.|-+|+|+.....+ T Consensus 114 ~d~~~~~~lYvnG~~~~~~~~~~~~~~~-~~-~~~~~~iG~~~~~~g~~~~~f~G~Idevri~~~aLs~ 180 (191) T 2v73_A 114 IEKGIGAKIFLNGSLVKTVSDPNIKFLN-AI-NLNSGFIGKTDRANGYNEYLFRGNIDFMNIYDKPVSD 180 (191) T ss_dssp EETTTEEEEEETTEEEEEEECTTCCCGG-GS-CCCEEEESSCCCCSSSCCCCCCEEEEEEEEESSCCCH T ss_pred EeCCCcEEEEECCEEeeeeccCCccccc-cc-CCceEEECCCCCCCCccCcCCceEEeEEEEECCcCCH Confidence 997 7899999999988765532 1111 11 3457999986321 134699999999999876544No 25>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Probab=98.28 E-value=1.6e-05 Score=83.24 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=85.2 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) +|+|.+.||... ..+.||...+. ....+|.|+|..- .|.|.|..... ...+.-...+.|++||+|.|... T Consensus 39 ~~~is~~frT~~-~~GlLl~~~~~-~~~d~l~L~L~~G-----~l~~~~~~g~~---~~~~~s~~~vnDG~WH~V~l~~~ 108 (205) T 1f5f_A 39 KTSSSFEVRTWD-PEGVIFYGDTN-PKDDWFMLGLRDG-----RPEIQLHNHWA---QLTVGAGPRLDDGRWHQVEVKME 108 (205) T ss_dssp CCEEEEEEEESC-SSEEEEEEEEE-TTTEEEEEEEETT-----EEEEEEESSSC---EEEEECSCCCCSSSCEEEEEEEE T ss_pred CcEEEEEEEECC-CCEEEEEeCCC-CCCCEEEEEEeCC-----EEEEEEECCCc---eEEEecCCccCCCCCEEEEEEEe Confidence 889999999775 45788887764 3457888888654 26777764321 12222356788999999999999 Q ss_pred CCeEEEEEcCccceee-eccCCCceeeccCCceEEEEeccc-------ccCCceeeeeee-eEEecCc Q FBpp0290327 167 SDKVSFYYDCELRNTT-LVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEK-INVYGNP 225 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~-~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~-l~i~~dp 225 (1008) +..++|+||.....+. ..... ..........||||-... .....|+|=|++ |+|-..+ T Consensus 109 ~~~~~L~VD~~~~~~~~~~~~~-~~~~~~~~~~lyvGG~p~~~~~~~~~~~~~F~GCi~~~v~in~~~ 175 (205) T 1f5f_A 109 GDSVLLEVDGEEVLRLRQVSGP-LTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQA 175 (205) T ss_dssp TTEEEEEETTEEEEEECSCCCC-C----CCEEEEEESSCSSCGGGSSSCCCCCCCEEEEEEECSCGGG T ss_pred CCEEEEEECCccceeeecccCc-cccCCCcCccEEECCccCcccccccCCCCCccEEecccEEECCeE Confidence 9999999999876542 22111 111112246899987521 113469999999 7776554No 26>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} SCOP: b.29.1.0 Probab=98.23 E-value=1.6e-05 Score=90.83 Aligned_cols=125 Identities=16% Similarity=0.302 Sum_probs=84.6 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe----eeccCCCCeeEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF----GVAHVPDKWNSIA 162 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF----~v~l~dg~WHrla 162 (1008) +|+|.+.||.. ...+.||.+.+. ...+|.|.|... .|.|.|....+ .....+ ...+.|++||+|. T Consensus 221 ~~~isl~frT~-~~~GlLl~~~~~--~~d~l~l~L~~G-----~l~~~~~~g~g---~~~~~~~~~~~~~l~DG~WH~V~ 289 (383) T 2jd4_A 221 DLQITLEFRTT-SKNGVLLGISSA--KVDAIGLEIVDG-----KVLFHVNNGAG---RITATYQPRAARALCDGKWHTLQ 289 (383) T ss_dssp CEEEEEEEEES-CSCEEEEEEECS--SSCEEEEEEETT-----EEEEEEESSSC---EEEEEECCSSTTGGGSSSCEEEE T ss_pred ceEEEEEEEeC-CCCEEEEEecCC--CCCEEEEEEECC-----EEEEEEECCCC---cEEEEEecCCCccccCCCcEEEE Confidence 88999999966 556799988763 346888888654 37777754322 122233 3577899999999 Q ss_pred EEEeCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEeccc-------ccCCceeeeeeeeEEecC Q FBpp0290327 163 LQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEKINVYGN 224 (1008) Q Consensus 163 LsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~l~i~~d 224 (1008) |...+..++|+||+....+...... ...++....+|||-... .....|+|-|++|+|.-. T Consensus 290 v~~~~~~~~L~VD~~~~~~~~~~~~--~~~l~~~~~l~iGG~p~~~~~~~~~~~~~F~GCi~~v~in~~ 356 (383) T 2jd4_A 290 AHKSKHRIVLTVDGNSVRAESPHTH--STSADTNDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRG 356 (383) T ss_dssp EEEETTEEEEEETTEEEEEC----C--CCCBCCCEEEEESCCCTTSCCTTCSCCCBCEEEEEEEEEC-- T ss_pred EEEeCCEEEEEECCeeeccccCCcc--cccccCCCCEEEcCccCcccccccccCCCCceEeeeEEECCC Confidence 9999999999999988655322111 12234467899987421 123469999999999654No 27>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Probab=98.22 E-value=1.8e-05 Score=84.40 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=86.3 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) .+.|.+.||... ..+.||.+.+......+|.|+|..- .|.|.|....+.. .+......+.|++||+|.|... T Consensus 64 ~~~isl~FrT~~-~~GlLl~~~~~~~~~dfl~L~L~~G-----~l~~~~~~G~~~~--~l~~~~~~l~DG~WH~V~v~r~ 135 (226) T 2r1d_A 64 ADRLAIGFSTVQ-KEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDDI--AIEESNAIINDGKYHVVRFTRS 135 (226) T ss_dssp EEEEEEEEECCC-SSEEEEEEEECTTCCCEEEEEEETT-----EEEEEEESSSCEE--EEECCSSCCCSSSCEEEEEEEE T ss_pred cCEEEEEEEECC-CCeEEEEecCCCCCCCEEEEEEECC-----EEEEEEECCCCeE--EEecCCcCccCCCcEEEEEEEc Confidence 678888888754 5678888877423457888888654 3778886543211 1112256788999999999999 Q ss_pred CCeEEEEEcCcccee-eeccCCCceeeccCCceEEEEecccccCCceeeeeeeeEEecC Q FBpp0290327 167 SDKVSFYYDCELRNT-TLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGN 224 (1008) Q Consensus 167 g~~VtLyVDC~~~~t-~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~d 224 (1008) +..++|+||.....+ ......... ++....||||-.. ....|.|-|++|+|-.. T Consensus 136 ~~~~~L~VD~~~~~~~~~~~~~~~~--l~~~~~l~lGG~p--~~~~F~GCi~~v~in~~ 190 (226) T 2r1d_A 136 GGNATLQVDSWPVIERYPAGRQLTI--FNSQATIIIGGKE--QGQPFQGQLSGLYYNGL 190 (226) T ss_dssp TTEEEEEETTSCCEEECCSSCCCCC--BCSEEEEEESSTT--TTCCCCEEEEEEEETTB T ss_pred CCEEEEEECCeeeeeEecCCCcceE--EcCCCCEEEeccc--CCCCCEEEEeeEEECCE Confidence 999999999986433 233222222 3345679998762 34679999999998544No 28>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Probab=98.13 E-value=3e-05 Score=88.92 Aligned_cols=126 Identities=10% Similarity=0.236 Sum_probs=85.9 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe----eeccCCCCeeEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF----GVAHVPDKWNSIA 162 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF----~v~l~dg~WHrla 162 (1008) +|+|.+.||... ..+.||.+.+. ...+|.|.|..- .|.|.|....+. ....+ ...+.||+||+|+ T Consensus 233 ~~~is~~frT~~-~~GlLl~~~~~--~~~~l~l~L~~G-----~l~~~~~~g~g~---~~~~~~~~~~~~l~DG~WH~V~ 301 (394) T 1dyk_A 233 DLLVEFEFRTTR-PTGVLLGVSSQ--KMDGMGIEMIDE-----KLMFHVDNGAGR---FTAIYDAEIPGHMCNGQWHKVT 301 (394) T ss_dssp EEEEEEEEEESC-SCEEEEEEECS--SSCEEEEEEETT-----EEEEEEESSSCC---EEEEECCCSTTSTTSSSCEEEE T ss_pred ceEEEEEEEeCC-CCcEEEEeccC--CCCEEEEEEECC-----EEEEEEECCCCc---eEEEEecCCCCcCcCCCcEEEE Confidence 788889998754 45789888763 346788887643 377777543221 22233 3577899999999 Q ss_pred EEEeCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc-------cCCceeeeeeeeEEecCc Q FBpp0290327 163 LQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------IGGKFEGYLEKINVYGNP 225 (1008) Q Consensus 163 LsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~~~~F~G~LQ~l~i~~dp 225 (1008) |...+..++|+||+.......... ....++....+|||..... ....|+|-|++|+|-..+ T Consensus 302 v~~~~~~~~L~VD~~~~~~~~~~~--~~~~~~~~~~l~iGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~ 369 (394) T 1dyk_A 302 AKKIKNRLELVVDGNQVDAQSPNS--ASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGT 369 (394) T ss_dssp EEEETTEEEEEETTEEEEEECCCT--TCCCBCCCBCCEESCCCTTCCCTTCSCCCCCEEEEEEEEEECTT T ss_pred EEEeCCEEEEEECCcccccccCCc--cccccccCCCEEECCCCCcccccCccccCCccccccEEEECCcc Confidence 999999999999998765432211 1222445678999875211 134699999999996543No 29>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3mw2_A* 3b3q_E* 3mw3_A* Probab=98.06 E-value=5.9e-05 Score=79.92 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=82.7 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe-eeccCCCCeeEEEEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQV 165 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV 165 (1008) .++|.+.||... ..+.||.+.+......+|.|+|..- .|.|.|....+. ..... ...+.|++||+|.|.. T Consensus 36 ~~~isl~frT~~-~~GlLl~~~~~~~~~d~l~l~L~~G-----~l~~~~~~G~~~---~~~~~~~~~l~DG~WH~V~v~r 106 (220) T 2r1b_A 36 ADRLAIGFSTVQ-KEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDD---IAIEESNAIINDGKYHVVRFTR 106 (220) T ss_dssp EEEEEEEEECCC-SSEEEEEEEESTTCCCEEEEEEETT-----EEEEEEESSSSC---EEEECTTCCCCSSSCEEEEEEE T ss_pred CCEEEEEEEECC-CCeEEEEEcCCCCCCCEEEEEEeCC-----EEEEEEECCCCc---EEEecCCcCcCCCCCEEEEEEE Confidence 678888888765 4578888777422457888888543 377888654321 22233 5678899999999999 Q ss_pred eCCeEEEEEcCccceee-ec-cCCCcee---------------------------eccCCceEEEEecccccCCceeeee Q FBpp0290327 166 LSDKVSFYYDCELRNTT-LV-TREPIEL---------------------------VFDSASTLYIGQAGSIIGGKFEGYL 216 (1008) Q Consensus 166 ~g~~VtLyVDC~~~~t~-~l-~r~~~~l---------------------------~~~~~~~l~IGq~g~~~~~~F~G~L 216 (1008) .+..++|.||.....+. .. ......+ .+.....||||-.. ....|.|=| T Consensus 107 ~~~~~~L~VD~~~~~~~~~~g~~~~~~l~~~~~~~~~~~g~~~~~~~~d~~~~~~~~n~~~~l~iGG~p--~~~~F~GCi 184 (220) T 2r1b_A 107 SGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKE--QGQPFQGQL 184 (220) T ss_dssp ETTEEEEEETTSCCEEECC-----------------CHHHHHHHHHHHHHHHGGGSBCCEEEEEESSTT--TTCCCCEEE T ss_pred eCCEEEEEECCCcceeeccCCCCccceeeccccccceeecccccccccccccceeEecCcCcEEECCcc--CCCCCeEEE Confidence 99999999998764331 11 0000000 11223679998752 245699999 Q ss_pred eeeEEecC Q FBpp0290327 217 EKINVYGN 224 (1008) Q Consensus 217 Q~l~i~~d 224 (1008) ++|+|--. T Consensus 185 ~~v~in~~ 192 (220) T 2r1b_A 185 SGLYYNGL 192 (220) T ss_dssp EEEEETTB T ss_pred CcEEECCE Confidence 99998544No 30>4qvs_A S-layer domain-containing protein; human microbiome, midwest center for structural genomics, MC biology; 2.10A {Ruminiclostridium thermocellum atcc 27ORGANISM_TAXID} Probab=98.05 E-value=9.4e-06 Score=84.93 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=97.2 Q ss_pred EEEeccCCCCcceEecCC-CccCCCcccccCCcCCceEEEEEEeecCCCC---ceEEEEEecCCCeeEEEEEEcccccCc Q FBpp0290327 53 IEFGEAEDGFPAFRFLQT-ADVKSPYRMLLPEKLYEFAILITFRQSSLKG---GYLFSVVNPLDTVVQLGVHLSPVVKNS 128 (1008) Q Consensus 53 V~~v~G~d~~pAyrf~~~-a~l~~pt~~~fP~~~~eFSilaTlR~~~~~~---g~LfsV~~~~~~~~qlgL~ls~~~~~~ 128 (1008) ++++.|..+ .|++|... ..+..|.. ++ ....+|+|.++||+..... ..||+.-+ ....+-|..... T Consensus 38 ~~~~~g~~g-~al~f~G~~~~v~~~~~-~~-~~~~~fTi~~Wvk~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~---- 107 (227) T 4qvs_A 38 NGVVPGLNG-NSVSLDGVDDYVALPDG-IA-GTFYNFTIAFWVRLDTIGEQPIFDFFDSGS---NNKYMRLTAESD---- 107 (227) T ss_dssp SCEEECSSS-EEECCCSSSCEEECCTT-SS-TTCSSCCCCCCCCCSSCSSEEEEEEECTTC---SSCEEEEEECTT---- T ss_pred ceeccCCCC-cEEEecCcCCEEEcCcc-cc-cCCCCeEEEEEEEeCCCCCCcceeeEecCC---CCcEEEEEEcCC---- Confidence 455555433 68888654 34555532 11 1112999999999987664 34554322 223444433322 Q ss_pred eeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccC-CCceeeccCCceEEEEecccc Q FBpp0290327 129 YNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR-EPIELVFDSASTLYIGQAGSI 207 (1008) Q Consensus 129 ~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r-~~~~l~~~~~~~l~IGq~g~~ 207 (1008) ..+.|.+...+... ...+.-...+.+++||+|++...+..++||||.+++.+..... .+..+ +.....++||..... T Consensus 108 g~l~~~~~~~~~~~-~~~~~~~~~~~~~~W~hva~t~d~~~~~lYvnG~~~~~~~~~~~~~~~~-~~~~~~~~iG~~~~~ 185 (227) T 4qvs_A 108 GKIKFAMTQSGYYG-EKTITSGSALTEGVWKHVAVTLSGDTGTLYINGENVGENNTLSLRPLTF-LGETSKGYIGKSHQT 185 (227) T ss_dssp SCEEEEEESSCGGG-CEEEECCCCCCTTCCCCEEEEEETTEEEEEETTEEEEEETTCCC-CCSS-SGGGCCCCSSCCCCC T ss_pred CcEEEEEeCCCCCc-ceEEecCCcccCCcEEEEEEEEeCCeEEEEECCEEeeeccCCCCCcccc-cCCCcceeecCCcCC Confidence 12556654332211 1222223566799999999999999999999999988754321 12211 122456888886321 Q ss_pred c-------CCceeeeeeeeEEecCcccc Q FBpp0290327 208 I-------GGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 208 ~-------~~~F~G~LQ~l~i~~dp~~a 228 (1008) . ...|.|.|.+|+|+..+..+ T Consensus 186 ~~~~~~~~~~~f~G~idevri~~~aLs~ 213 (227) T 4qvs_A 186 DSSEDPYYNSYLHGMIDDFRIFDRALSA 213 (227) T ss_dssp SCTTCSSTTCCCCSCCCCCCCCSSCCCH T ss_pred CccCCcccccccCcEeeEEEEEcccCCH Confidence 1 13799999999999876543No 31>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* 4ra0_A* Probab=97.84 E-value=0.00034 Score=81.03 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=85.4 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) .|+|.+.||... ..|.||...+. +...+|.|+|..- .|.|.|...+.. .+..-...+.|++||+|.|... T Consensus 62 ~~~isl~frT~~-~~GlLl~~~~~-~~~d~~~L~L~~G-----~l~~~~~~g~~~---~~~~~~~~lnDg~WH~V~v~~~ 131 (422) T 1h30_A 62 RLVAEFDFRTFD-PEGILLFAGGH-QDSTWIVLALRAG-----RLELQLRYNGVG---RVTSSGPVINHGMWQTISVEEL 131 (422) T ss_dssp CCEEEEEEEECC-SSEEEEEEESC-TTSEEEEEEEETT-----EEEEEEEETTEE---EEEEEEEECCSSCCEEEEEEEC T ss_pred cEEEEEEEEeCC-CCeEEEEeCCC-CCCCEEEEEEECC-----EEEEEEECCCCc---eEEeCCceecCCCCEEEEEEEc Confidence 788888998765 55788888775 4457899998765 377777654321 2222345788999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeecc-CCceEEEEeccc-------ccCCceeeeeeeeEEec Q FBpp0290327 167 SDKVSFYYDCELRNTTLVTREPIELVFD-SASTLYIGQAGS-------IIGGKFEGYLEKINVYG 223 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~~l~r~~~~l~~~-~~~~l~IGq~g~-------~~~~~F~G~LQ~l~i~~ 223 (1008) +..++|+||-....+.........+... -...+|||-... .....|.|=|++|+|+- T Consensus 132 ~~~~~l~vD~~~~~~~~~~g~~~~l~~~~~~~~lyvGG~p~~~~~~~~~~~~~F~GCi~~l~~~n 196 (422) T 1h30_A 132 ARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLN 196 (422) T ss_dssp SSEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSSCGGGSSSCCCCCCCEEEEEEEEC- T ss_pred CCEEEEEECCcceEeeecCCcccccccCcccceEEEecccCcccccccccCCCCCEEeeeeEEcC Confidence 9999999998765443333332233210 135799986521 11246999999999633No 32>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} SCOP: b.29.1.0 Probab=97.75 E-value=0.00059 Score=77.91 Aligned_cols=126 Identities=16% Similarity=0.266 Sum_probs=83.7 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) +|+|.+.||.... .+.||-..+. +...+|.|+|..- .|.|.|.-.++. ..+.....+.|++||+|.|... T Consensus 44 ~~~is~~frT~~~-~GlLl~~~~~-~~~d~~~l~L~~G-----~l~~~~~~g~~~---~~~~~~~~v~Dg~WH~V~v~r~ 113 (383) T 2jd4_A 44 RLQVQLSIRTFAS-SGLIYYVAHQ-NQMDYATLQLQEG-----RLHFMFDLGKGR---TKVSHPALLSDGKWHTVKTEYI 113 (383) T ss_dssp EEEEEEEEEECCS-CEEEEEEECT-TSSSEEEEEEETT-----EEEEEEECSSCE---EEEECCCCCTTSSCEEEEEEEE T ss_pred ceEEEEEEEeCCC-CeEEEEeCCC-CCCcEEEEEEECC-----EEEEEEECCCCe---EEEeCCccccCCCCEEEEEEEE Confidence 8899999997654 4687777653 3456888888654 377777543321 2223355678999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc--------cCCceeeeeeeeEEecC Q FBpp0290327 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--------IGGKFEGYLEKINVYGN 224 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--------~~~~F~G~LQ~l~i~~d 224 (1008) +..++|+||=..............+ +....+|||-.... ....|.|-|++|+|... T Consensus 114 ~~~~~L~vD~~~~~~~~~~~~~~~l--~~~~~l~iGG~p~~~~~~~~~~~~~~F~GCi~~l~in~~ 177 (383) T 2jd4_A 114 KRKAFMTVDGQESPSVTVVGKATTL--DVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNGQ 177 (383) T ss_dssp TTEEEEEETTEECCCEECCSSCCCC--CCCSEEEESSCCTTCCCCSSCSCCSBCCEEEEEEEETTE T ss_pred CCEEEEEEeCCccceeecCCCCcee--cCCCCEEEeCcCccccccccccccCCeeeEeeeEEECCE Confidence 9999999997654433322222222 33567999864210 12459999999998543No 33>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Probab=97.59 E-value=0.0028 Score=74.29 Aligned_cols=165 Identities=10% Similarity=0.149 Sum_probs=97.0 Q ss_pred CcEEEeccCCCCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCCC-C------ceEEEEEecCC-----C Q FBpp0290327 51 AGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLK-G------GYLFSVVNPLD-----T 113 (1008) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~-~------g~LfsV~~~~~-----~ 113 (1008) ..++++.|.. ..|+.|..... |..|.. ++...+. +|||.+++|+.... . .-+++|.+... . T Consensus 47 G~vs~v~G~~-GkAl~fdG~~~S~~~V~lp~~-ll~~~~~~sFTISfWVK~~~~~t~~~~~y~~g~~~Ii~~~~~~w~~~ 124 (452) T 1a8d_A 47 PDAQLVPGIN-GKAIHLVNNESSEVIVHKAMD-IEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSI 124 (452) T ss_dssp TTCEEEECSS-SEEEEEESSTTCCEEEECCGG-GTTTTTTSCEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEECGGGC T ss_pred CCceecCCcc-cceEEEcCCCCceEEEecCch-hcccCCCCCEEEEEEEeccccCcccccccccCceEEEeccCcccccC Confidence 4577887755 47999976542 444443 3444455 99999999997653 1 12345553321 1 Q ss_pred eeEEEEEEcccccCceeEEEEEEecccccceeeeEe-----eec-cCCCCeeEEEEEEe-CCeEEEEEcCccceeeeccC Q FBpp0290327 114 VVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-----GVA-HVPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTR 186 (1008) Q Consensus 114 ~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-----~v~-l~dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r 186 (1008) ...+.|.+... .+.|.+....+. .+...| .++ +.+++||+||+.+. ...++||||-+++.+..+.. T Consensus 125 ~~G~~i~l~~g-----~l~f~~~~~~G~--~~~i~~~~~~~~i~~v~~g~W~HVAvT~D~~~~~~lYVNG~lv~~~~~~~ 197 (452) T 1a8d_A 125 GSGWSVSLKGN-----NLIWTLKDSAGE--VRQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITG 197 (452) T ss_dssp EEEEEEEEETT-----EEEEEEECTTSC--EEEEEEECCSBTTSCSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECTT T ss_pred CCCcEEEEcCC-----eEEEEEEeCCCC--cceeEeeccccccCcCCCCceEEEEEEEeCCCCEEEeECCEEeeeecccc Confidence 34455555432 245554432221 121212 122 23799999999998 55679999999987765432 Q ss_pred CCceeeccCCceEEEEecccccCCceeeeeeeeEEecCcccc Q FBpp0290327 187 EPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 187 ~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) . ..+ .....+.|+..+. ....|.|.|.+|+|+..+..+ T Consensus 198 ~-~~i--~~~~~~~lgiG~~-~d~~f~G~IDEvRIynrALS~ 235 (452) T 1a8d_A 198 L-GAI--REDNNITLKLDRC-NNNNQYVSIDKFRIFCKALNP 235 (452) T ss_dssp C-CCC--CCCSEEEEEEESC-CCTTCEEEEEEEEEESSCCCH T ss_pred c-ccc--ccCCeEEEEEccC-CCCCCcEEEEEEEEECCcCCH Confidence 1 111 2233455554321 245699999999999987444No 34>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Probab=97.58 E-value=0.0013 Score=74.72 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=90.8 Q ss_pred CcceEecCCCccCCCcccccCCcCCceEEEEEEeecCCC-CceEEEEEecCCCeeEEEEEEcccccCc-eeEEEEEEecc Q FBpp0290327 62 FPAFRFLQTADVKSPYRMLLPEKLYEFAILITFRQSSLK-GGYLFSVVNPLDTVVQLGVHLSPVVKNS-YNVSLVYTQAD 139 (1008) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~~~eFSilaTlR~~~~~-~g~LfsV~~~~~~~~qlgL~ls~~~~~~-~~i~l~Y~~~~ 139 (1008) ..|++|.. ..+..+.... ....+|+|.+++|+.... ...||+ . ++ .|.|++.....+. ..-.|.+... T Consensus 140 ~~al~f~G-~yi~v~~~~~--~~~~~fTi~~Wvk~~~~~~~~~i~g---~-~g--~~~l~~~~~~~gi~~~~~l~~~g~- 209 (355) T 4dqa_A 140 TKAGNFSN-HYISVKFPVG--TFFSSFTYEALINVDYFLDNNTIMG---T-EG--VMILRIGDAGGGITPKDYLEVAGG- 209 (355) T ss_dssp CEEEEEES-CCEEECCCTT--CCBSSEEEEEEEEESCCCSSEEEEE---E-TT--TEEEEEEEGGGTSEEEEEEEEEES- T ss_pred ccccccCC-ceEEecCCCC--CCccCEEEEEEEEccccCCcceEEc---C-CC--cEEEEecCCCcCcCcCCEEEEcCC- Confidence 56777765 4454442221 111299999999997654 334554 2 22 3444553221000 1122333221 Q ss_pred cccceeeeEeeeccCCCCeeEEEEEEe--CCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc--cCCceeee Q FBpp0290327 140 QNIGRKLASFGVAHVPDKWNSIALQVL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--IGGKFEGY 215 (1008) Q Consensus 140 ~~~~q~~~sF~v~l~dg~WHrlaLsV~--g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--~~~~F~G~ 215 (1008) . .+ .-...+.+++||+|++... +..++||||.+++.+....... +.+.....++||+.... ....|.|. T Consensus 210 --~--~~-~s~~~~~~~~W~Hva~t~d~~~~~~~lYvnG~~~~~~~~~~~~--~~~~~~~~l~IG~~~~~~~~~~~f~G~ 282 (355) T 4dqa_A 210 --Q--NY-RVTKPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGIDG--FDPNSDMGFYIGRIYGFKWGERPFHGK 282 (355) T ss_dssp --S--CE-ECSSCCCSSCEEEEEEEEETTTTEEEEEETTEEEEEEECCCCC--BCTTSTTCEEESCCTTCTTCCCCCEEE T ss_pred --C--cc-ccCCccCCCCEEEEEEEEECCCCEEEEEECCEEEeEEEcCCCc--cccCCCceEEEcCCCCCCCCCccceEE Confidence 1 11 1134667999999999999 8999999999998876654322 22233467999986321 24579999 Q ss_pred eeeeEEecCcccc Q FBpp0290327 216 LEKINVYGNPDAI 228 (1008) Q Consensus 216 LQ~l~i~~dp~~a 228 (1008) |.+|||+...... T Consensus 283 idevri~~~aLs~ 295 (355) T 4dqa_A 283 MSEVRVWSVARTE 295 (355) T ss_dssp EEEEEEESSCCCH T ss_pred EEEEEEECCCCCH Confidence 9999999987544No 35>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Probab=97.54 E-value=0.0013 Score=75.40 Aligned_cols=126 Identities=15% Similarity=0.231 Sum_probs=83.5 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) +|+|.+.||... ..+.||-..+. +...+|.|+|..- .|.|.|....+. ..+.....+.|++||+|.|... T Consensus 58 ~~~is~~frT~~-~~GlLl~~~~~-~~~d~~~l~l~~G-----~l~~~~~~g~g~---~~~~~~~~~nDg~WH~V~v~~~ 127 (394) T 1dyk_A 58 RLTIELEVRTEA-ESGLLFYMARI-NHADFATVQLRNG-----FPYFSYDLGSGD---TSTMIPTKINDGQWHKIKIVRV 127 (394) T ss_dssp EEEEEEEEEECC-SCEEEEEEECT-TSSSEEEEEEETT-----EEEEEEESSSCE---EEEECCSCCCSSSCEEEEEEEE T ss_pred ceEEEEEEEECC-CCeEEEEeCCC-CCCCeEEEEEECC-----EEEEEEECCCCc---EEEEecceecCCCeEEEEEEEe Confidence 788889999765 45687776653 3457888888654 377777543321 2223355778999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc--------cCCceeeeeeeeEEecCc Q FBpp0290327 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--------IGGKFEGYLEKINVYGNP 225 (1008) Q Consensus 167 g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--------~~~~F~G~LQ~l~i~~dp 225 (1008) +..++|+||=....... ...... ++....+|||-.... ....|.|-|++|+|...+ T Consensus 128 ~~~~~L~vD~~~~~~~~-~~~~~~--l~~~~~l~lGG~p~~~~~~~~~~~~~~F~GCi~~l~in~~~ 191 (394) T 1dyk_A 128 KQEGILYVDDASSQTIS-PKKADI--LDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQAP 191 (394) T ss_dssp TTEEEEEETTEEEEEEC-STTCCC--CCCCSEEEESSCCTTCCCCSSCSCCSBCSEEEEEEEESSSC T ss_pred CCEEEEEECCcccccCc-CCCCcc--ccCCCceEEcccCCcccccccccCCCCceEEeeEEEECCEE Confidence 99999999976543322 111111 334568999764211 113599999999986543No 36>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Probab=97.48 E-value=0.0009 Score=81.34 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=79.2 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeee--EeeeccCCCCeeEEEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLA--SFGVAHVPDKWNSIALQ 164 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~--sF~v~l~dg~WHrlaLs 164 (1008) ++.|.+.||.. ...|.||.+.+. ...+|.|.|..- .|.|.|....... ..++ .....+.||+||+|.|. T Consensus 408 ~~~i~~~FRT~-~~~GlLl~~~~~--~~~~l~l~L~~G-----~l~~~~~~g~~~~-~~~~~~~~~~~l~DG~WH~V~l~ 478 (608) T 2wjs_A 408 GTEINLSFSTR-NESGIILLGSGG--GQAYYAIFLNKG-----RLEVHLSSGTRTM-RKIVIKPEPNRFHDGREHSVHVE 478 (608) T ss_dssp TEEEEEEEEES-CSSEEEEEEC-----CCEEEEEEETT-----EEEEEEEC----C-EEEEECCCSSCSSSSSCEEEEEE T ss_pred CcEEEEEEEeC-CCceEEEEEcCC--CCCEEEEEEECC-----EEEEEEECCCCce-eeEEEecCCcccCCCCEEEEEEE Confidence 67788888765 456788876653 345788888643 2677775433211 1122 23567889999999999 Q ss_pred EeCCeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc-------cCCceeeeeeeeEEec Q FBpp0290327 165 VLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------IGGKFEGYLEKINVYG 223 (1008) Q Consensus 165 V~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~~~~F~G~LQ~l~i~~ 223 (1008) ..+..++|+||.+...+..+... ..+.+ ..+|||-.... ....|+|=||+|+|-. T Consensus 479 ~~~~~~~L~VD~~~~~~~~~~~~-~~l~~---~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in~ 540 (608) T 2wjs_A 479 RTRGIFTVQIDEDRRHMQNLTEE-QPIEV---KKLFVGGAPPEFQPSPLRNIPAFQGCVWNLVINS 540 (608) T ss_dssp ECSSEEEEEESSSCCEEEECCCC-SCBCC---SCEEESCCCC--------CCCCCCEEEEEEEETT T ss_pred EeCCEEEEEECCCcceeeccCCC-ccccc---ccEEEeCCCccccccccccCCCCEEEcCeeEECC Confidence 99999999999987655443221 22222 36999875211 1246999999999853No 37>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Probab=97.44 E-value=0.0015 Score=75.30 Aligned_cols=123 Identities=18% Similarity=0.308 Sum_probs=80.1 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeE--eeeccCCCCeeEEEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS--FGVAHVPDKWNSIALQ 164 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~s--F~v~l~dg~WHrlaLs 164 (1008) +|+|.+.||.... .+.||-..+ +...+|.|+|..- .|.|.|....+. .... -...+.|++||+|.|. T Consensus 27 ~~~is~~frT~~~-~GlLl~~~~--~~~df~~l~L~~G-----~l~~~~~~G~g~---~~~~~~s~~~vnDg~WH~V~v~ 95 (410) T 3asi_A 27 SMHLFFQFKTTSL-DGLILYNSG--DGNDFIVVELVKG-----YLHYVFDLGNGA---NLIKGSSNKPLNDNQWHNVMIS 95 (410) T ss_dssp CEEEEEEEECSCS-CEEEEEEEB--STTCEEEEEEETT-----EEEEEEESSSCE---EEEECCCSSCSCSSSCEEEEEE T ss_pred eEEEEEEEEECCC-CEEEEEeCC--CCCCeEEEEEECC-----EEEEEEECCCCc---EEEEecCCCccCCCCCEEEEEE Confidence 7888889987654 467765443 3457888888654 277777543221 2222 2457889999999999 Q ss_pred EeCCe-EEEEEcCccceeeeccCCCceeeccCCceEEEEecccc----------cCCceeeeeeeeEEecC Q FBpp0290327 165 VLSDK-VSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI----------IGGKFEGYLEKINVYGN 224 (1008) Q Consensus 165 V~g~~-VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~----------~~~~F~G~LQ~l~i~~d 224 (1008) ....+ ++|+||-....... . ....+ +....+|||-.... ....|+|=|++|+|-.. T Consensus 96 ~~~~~~~~L~vD~~~~~~~~-~-~~~~l--~~~~~lyvGG~p~~~~~~~~~~~~~~~~F~GCi~~v~in~~ 162 (410) T 3asi_A 96 RDTSNLHTVKIDTKITTQIT-A-GARNL--DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGR 162 (410) T ss_dssp ECTTCEEEEEETTEEEEEEC-T-TCCCC--CBCSCEEESCCCGGGGGGSCTTCCCSSBCCEEEEEEESSSC T ss_pred EcCCccEEEEECCccceecC-C-Cceee--ccCCCeEEcccccchhcccccccccccCcceEeeeeEECCe Confidence 99876 69999987543321 1 11122 33567999875211 12469999999988543No 38>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* 4foq_A 4fov_A* 4fow_A 4foy_A* 4fp2_A* 4fp3_A* 4fpc_A* 4fpe_A* 4fpf_A* 4fpg_A* 4fph_A* 4fpj_A* 4fpk_A* 4fpl_A* 4fpo_B* 4fpy_A* 4fq4_A* Probab=97.42 E-value=0.0015 Score=80.72 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=100.0 Q ss_pred CcceEecCCCccCCCcccccCCcC--CceEEEEEEeecC-CCCceEEEEEecCC--CeeEEEEEEcccccCceeEEEEEE Q FBpp0290327 62 FPAFRFLQTADVKSPYRMLLPEKL--YEFAILITFRQSS-LKGGYLFSVVNPLD--TVVQLGVHLSPVVKNSYNVSLVYT 136 (1008) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~~--~eFSilaTlR~~~-~~~g~LfsV~~~~~--~~~qlgL~ls~~~~~~~~i~l~Y~ 136 (1008) ..|+.|.... +..+... -..+ -+|||.++||+.. .+...||+..+... ...+|.|.+.... ++.|... T Consensus 34 g~a~~fdG~~-v~l~~~~--~~~l~~~~fTv~~Wvk~~~~~~~~~lfs~~~~~~~~~~~~~~l~~~~~g----~~~~~~~ 106 (686) T 2jkb_A 34 GGSYQLNNKS-IDISSLL--LDKLSGESQTVVMKFKADKPNSLQALFGLSNSKAGFKNNYFSIFMRDSG----EIGVEIR 106 (686) T ss_dssp EEEEEEESSC-EECHHHH--GGGCCSSCEEEEEEEECSSCCSEEEEEEEECCSTTCTTCEEEEEEETTS----CEEEEEE T ss_pred cceEEecCce-EECchhc--cccCCCCCeEEEEEEEeCCCCCCCEEEEecCCCCCCccccEEEEEeCCC----eEEEEEE Confidence 4688885443 4444332 2345 3999999999975 44456999886422 2356777776531 2666665 Q ss_pred ecccccceeeeEeeec-----cCCCCeeEEEEEEeC--CeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccc-- Q FBpp0290327 137 QADQNIGRKLASFGVA-----HVPDKWNSIALQVLS--DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-- 207 (1008) Q Consensus 137 ~~~~~~~q~~~sF~v~-----l~dg~WHrlaLsV~g--~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-- 207 (1008) ..+.... ..+..... ..+++||+|++.... ..++||||-+++.+........--.+.....|+||+.... T Consensus 107 ~~~~~~~-~~~~~~~~~~~~~~~~g~W~Hva~t~d~~~g~~~lYvnG~~~~~~~~~~~~~~~~~~~~~~~~IG~~~~~g~ 185 (686) T 2jkb_A 107 DAQKGIN-YLFSRPASLWGKHKGQAVENTLVFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNREGK 185 (686) T ss_dssp ETTTTEE-EEEEESSCCCCEETTEECCEEEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEETTE T ss_pred eCCCcee-EEeeccccccccccCCCCeEEEEEEEECCCCeEEEEECCEEEEeeccccceecccCCCCceEEECCeecCCC Confidence 4432211 11111111 125899999999976 4899999999988765532111011223457999984211 Q ss_pred cCCceeeeeeeeEEecCcccccccC Q FBpp0290327 208 IGGKFEGYLEKINVYGNPDAINVTC 232 (1008) Q Consensus 208 ~~~~F~G~LQ~l~i~~dp~~a~~~C 232 (1008) ....|.|.|-+|+|+..+....+.. T Consensus 186 ~~~~f~G~Idev~i~~~aLs~~eI~ 210 (686) T 2jkb_A 186 EHYLAKGSIDEISLFNKAISDQEVS 210 (686) T ss_dssp EESCCEEEEEEEEEESSCCCHHHHH T ss_pred ccccccceEEEEEEecccCCHHHHH Confidence 1224999999999998876654443No 39>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* 4ra0_A* Probab=97.42 E-value=0.00082 Score=77.87 Aligned_cols=127 Identities=16% Similarity=0.232 Sum_probs=80.8 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccc-cCcee---EEEEEEecccccceeeeEeeeccCCCCeeEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVV-KNSYN---VSLVYTQADQNIGRKLASFGVAHVPDKWNSIA 162 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~-~~~~~---i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrla 162 (1008) +|+|.+.||... ..|+||.+.+......+|.|.|..-. .++.+ |.|.+. .. .+......+.||+||+|. T Consensus 250 ~~~is~~frT~~-~~GlLl~~~~~~~~~d~l~l~L~~g~~~g~l~~~~v~~~~~--~~----~~~~~~~~l~DG~WH~V~ 322 (422) T 1h30_A 250 EVEVVAHIRPAA-DTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVE--HT----ALALMEIKVCDGQEHVVT 322 (422) T ss_dssp CEEEEEEEEESS-SCEEEEEEEEGGGTEEEEEEEEESCC-----CCCEEEEEET--TE----EEEEEECCTTSSCCEEEE T ss_pred eeEEEEEEEeCC-CCEEEEEEeccCCCcCceEEEEeeccccccccccEEEEEEC--Ce----EEEEeeeeecCCCEEEEE Confidence 899999999774 45799988864344568888875320 01112 556652 21 122335778899999999 Q ss_pred EEEeCCeEEEEEcCccceeeeccCCCc------eeeccCCceEEEEecccc------cCCceeeeeeeeEE Q FBpp0290327 163 LQVLSDKVSFYYDCELRNTTLVTREPI------ELVFDSASTLYIGQAGSI------IGGKFEGYLEKINV 221 (1008) Q Consensus 163 LsV~g~~VtLyVDC~~~~t~~l~r~~~------~l~~~~~~~l~IGq~g~~------~~~~F~G~LQ~l~i 221 (1008) |.+.+..++|+||.....+........ ...+.....+|||-.-.. ....|+|=|+ |+| T Consensus 323 l~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~l~~~l~~~~~lylGG~p~~~~~~~~~~~~F~GCi~-v~i 392 (422) T 1h30_A 323 VSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTAFYRGCMT-LEV 392 (422) T ss_dssp EEEETTEEEEEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCCCSCCTTSSSCCSBCCEEEE-EEE T ss_pred EEEECCEEEEEeCCccceeeccccchhhhhhhhhHhhccCccEEEcCcCCCcccccccCCCceEEEE-EEE Confidence 999999999999998765433211000 012445678999875211 1245999995 765No 40>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease, ganglioside, metal-B toxin, protease, membrane, receptor, secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 PDB: 2vua_A 4jra_A 3fuo_A 4iqp_A Probab=97.36 E-value=0.006 Score=69.70 Aligned_cols=167 Identities=9% Similarity=0.139 Sum_probs=103.6 Q ss_pred CCcEEEeccCCCCcceEecCCC----ccCCCcccccCCcCC-ceEEEEEEeecCCCCce----EEEEEecCCCeeEEEEE Q FBpp0290327 50 FAGIEFGEAEDGFPAFRFLQTA----DVKSPYRMLLPEKLY-EFAILITFRQSSLKGGY----LFSVVNPLDTVVQLGVH 120 (1008) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a----~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~----LfsV~~~~~~~~qlgL~ 120 (1008) ...|+++.| . ..||.+.... .|. -+..++-+.++ +|||.+++|..+.+..+ .++|.+.-....-..|. T Consensus 48 ~G~v~~~~G-~-g~A~~L~~s~~s~~~v~-~~ndii~n~~~nnFSIsFWvr~~k~~~~~~~~~e~tIIn~k~~NsGW~Is 124 (444) T 2vu9_A 48 GSKVNFDPI-D-KNQIQLFNLESSKIEVI-LKNAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVS 124 (444) T ss_dssp CTTEEECSS-C-TTCEEEESSTTCCEEEE-CCGGGSCEESSCCEEEEEEEECCCCCSGGGTTCCEEEEEEEETTEEEEEE T ss_pred CCceEEEec-C-CcEEEeccCCCceEEEe-cCchhhhccccCceEEEEEEECCCCCcccccCCceEeEeeccCCCCeEEE Confidence 456888888 4 4588885544 233 34455666777 99999999987766633 45555433223334444 Q ss_pred EcccccCceeEEEEEEecccccceeeeEee----eccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCceeec Q FBpp0290327 121 LSPVVKNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIELVF 193 (1008) Q Consensus 121 ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~~~~l~~ 193 (1008) +... .+.+-..+.. ..++...|. ..+. .++||.|+++|. -..+++|+|-+++.+..+.-. ..+.+ T Consensus 125 l~~n-----~liwtl~dsn--gn~k~i~f~y~~~~~I~dyinkW~hVtIt~Drlg~a~IYING~lv~~k~I~~l-g~I~~ 196 (444) T 2vu9_A 125 LNYG-----EIIWTLQDTQ--EIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNL-GNIHA 196 (444) T ss_dssp EETT-----EEEEEEECTT--SCEEEEEEECCSBSSSCSSTTSCEEEEEEECTTSEEEEEETTEEEEEEECTTC-CCEEC T ss_pred ECCC-----eEEEEEEecC--CceeeEEEecccccccccccCceEEEEEEECCCCCEEEEECCEEeeecchhhc-cceee Confidence 4433 1333333322 233444553 2222 389999999999 567899999999999877542 23322 Q ss_pred cCCceEEEEecccccCCceeeeeeeeEEecCcccccc Q FBpp0290327 194 DSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1008) Q Consensus 194 ~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1008) +..+.|+-.+ .....|.+.|.+|+|+..+-...+ T Consensus 197 --sn~i~l~v~~-~~d~~~~~~ID~f~Ifnk~Lt~~E 230 (444) T 2vu9_A 197 --SNNIMFKLDG-CRDTHRYIWIKYFNLFDKELNEKE 230 (444) T ss_dssp --CSEEEEEEES-CCCTTCEEEEEEEEEESSCCCHHH T ss_pred --CCeEEEEecc-cCCCccceeeeeeEEecccCCHHH Confidence 3344444432 245668899999999998855433No 41>3vuo_A NTNHA; protection of botulinum neurotoxin, botulinum neurotoxin, to; 3.90A {Clostridium botulinum} Probab=97.16 E-value=0.0078 Score=75.76 Aligned_cols=155 Identities=11% Similarity=0.160 Sum_probs=91.3 Q ss_pred CcEEEeccCCCCcceEecCCCc-cCCCcccccCCcCC-ceEEEEEEeec-CCC-CceEEEEEecCCCeeEEEEEEccccc Q FBpp0290327 51 AGIEFGEAEDGFPAFRFLQTAD-VKSPYRMLLPEKLY-EFAILITFRQS-SLK-GGYLFSVVNPLDTVVQLGVHLSPVVK 126 (1008) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~-l~~pt~~~fP~~~~-eFSilaTlR~~-~~~-~g~LfsV~~~~~~~~qlgL~ls~~~~ 126 (1008) .+++++.|.. ..|+.|..... +..|.. ++...+. +|||.+++|+. ... ...+|+-.+ ....+.|.+... T Consensus 864 G~~sfv~Gv~-GkAL~FDGSd~yV~LPn~-li~nslt~sFTVSFWVKplg~~T~~t~IIsskd---nnsGw~LsL~~n-- 936 (1196) T 3vuo_A 864 ESVELVYGVN-GESLYLKSPNETVEFSNN-FFTNGLTNNFTICFWLRFTGKDDDKTRLIGNKV---NNCGWEIYFEDN-- 936 (1196) T ss_dssp TTCEEEECSS-SEEEEECSSSCCEEEECG-GGGCCSSCCEEEEEEEEECCCCSSCEEEEEEEC---SSCEEEEEEETT-- T ss_pred CCceecCCCc-CceeEEcCCCceEEeCCc-ccccCCCCcEEEEEEEccCCCCCccceEEEecC---CCCCcEEEEcCC-- Confidence 3567776654 45888876443 443332 2222334 89999999994 222 122553332 122234445332 Q ss_pred CceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe--CCeEEEEEcCccceeeeccCCCceeeccCCceEE-EEe Q FBpp0290327 127 NSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLY-IGQ 203 (1008) Q Consensus 127 ~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~--g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~-IGq 203 (1008) .+.|...+..+ ..+...+. .+..++||+|++.+. +..++||||-+++.+..+.... ++. .+..+. +|. T Consensus 937 ---tL~Fsi~Ds~G--neqsI~~d-dI~~GkW~HVAVTyDr~G~aLKLYVNGeLVaS~sisgL~-dI~--ssg~IsFIG~ 1007 (1196) T 3vuo_A 937 ---GLVFEIIDSNG--NQESVYLS-NVINNNWYYISISVDRLKDQLLIFINDKNVANVSIEQIL-NIY--STNVISLVNK 1007 (1196) T ss_dssp ---EEEEEEECTTC--CEEEEEEC-SCTTSCCEEEEEEEETTTTEEEEEETTEEEEEEECTTCC-CCC--CCSEEEECCC T ss_pred ---cEEEEEEeCCC--cceeeecC-CCCCCCEEEEEEEEECCCCEEEEeECCEEccccccccCc-ccc--cCCceeEecC Confidence 24555543332 22333443 556899999999998 6677999999998887554321 221 123333 443 Q ss_pred cccccCCceeeeeeeeEEecCcccc Q FBpp0290327 204 AGSIIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 204 ~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) . |.|.|.+|+|+..+..+ T Consensus 1008 n-------FnG~IDEVRIYNRALSa 1025 (1196) T 3vuo_A 1008 N-------NSIYVEELSVLDKPVAS 1025 (1196) T ss_dssp S-------SCEEEEEEEEESSCCCH T ss_pred C-------CcEEeeEEEEECCCCCH Confidence 2 89999999999987433No 42>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Probab=97.11 E-value=0.0071 Score=73.50 Aligned_cols=126 Identities=17% Similarity=0.276 Sum_probs=81.0 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1008) .++|.+.||... ..|.||...+. +...+|.|+|..- .|.|.|.-..+. ..+.-...+.|++||+|.|... T Consensus 226 ~~~isl~FrT~~-~~GlLl~~~~~-~~~d~l~L~L~~G-----~l~~~~~~g~~~---~~l~~~~~lnDg~WH~V~v~~~ 295 (608) T 2wjs_A 226 ISTVMFKFRTFS-SSALLMYLATR-DLKDFMSVELSDG-----HVKVSYDLGSGM---TSVVSNQNHNDGKWKAFTLSRI 295 (608) T ss_dssp EEEEEEEEEESC-SEEEEEEEECT-TSSSEEEEEEETT-----EEEEEEECSSCE---EEEEEEEECCSSSCEEEEEEEE T ss_pred cceEEEEEEeCC-CCeEEEEecCC-CCCceEEEEEECC-----EEEEEEECCCCc---eEeecCccccCCCeEEEEEEEc Confidence 477777787654 56788887764 4457888888654 267777543221 1222345778999999999999 Q ss_pred CCeEEEEE-cCcccee--e--eccCCCceeeccCCceEEEEeccc-------ccCCceeeeeeeeEEe Q FBpp0290327 167 SDKVSFYY-DCELRNT--T--LVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEKINVY 222 (1008) Q Consensus 167 g~~VtLyV-DC~~~~t--~--~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~l~i~ 222 (1008) ++.++|.| ||..... . ........+.+.....+|||-.-. .....|.|=|++|+|- T Consensus 296 ~~~~~l~vdd~~~~~~~~~~~~~~g~~~~l~l~~~~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in 363 (608) T 2wjs_A 296 QKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEIS 363 (608) T ss_dssp TTEEEEEEEETTTCCEEEEEEECCSSCCCCCCCTTCEEEESCCCCCSCCCTTCCCCCCEEEEEEEEET T ss_pred ccEEEEEEEeccCCcccccccccCCcccccccCCCceEEEcCcccccccCccccccCcCccccccEEC Confidence 99999998 6654222 1 111112234444457899985421 1123599999999884No 43>3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 3azw_A 3azv_A 4isr_A 4isq_A 3n7m_A 4fvv_A* 3n7k_A 3r4s_A* 3r4u_A Probab=97.02 E-value=0.0036 Score=72.55 Aligned_cols=163 Identities=12% Similarity=0.204 Sum_probs=90.5 Q ss_pred CcEEEeccCCCCcceEecCCCc------cCCCcccccCCcCC-ceEEEEEEeecC-C---CCceEEEEEecCCCeeEEEE Q FBpp0290327 51 AGIEFGEAEDGFPAFRFLQTAD------VKSPYRMLLPEKLY-EFAILITFRQSS-L---KGGYLFSVVNPLDTVVQLGV 119 (1008) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~------l~~pt~~~fP~~~~-eFSilaTlR~~~-~---~~g~LfsV~~~~~~~~qlgL 119 (1008) ..|+++.| ...|+.|..... |..|.. ++-+.+. +|||.+++|+.. . ....||+..+. . .-+.+ T Consensus 32 g~v~~~~G--~g~Al~l~g~~~~~s~v~V~lPn~-li~n~~~~~FTVSfWVK~~~~~t~~~~~~If~~~~~-~--sGW~I 105 (424) T 3n7l_A 32 GNVQLNPI--FPFDFKLGSSGDDRGKVIVTQNEN-IVYNAMYESFSISFWIRINKWVSNLPGYTIIDSVKN-N--SGWSI 105 (424) T ss_dssp SBCEECSS--TTCCEEEESCSTTBCEEEEECCHH-HHHTTTTTEEEEEEEEEEETCCTTCCCEEEEEEESS-S--CEEEE T ss_pred CceEEecC--CCcEEEEccCCCccceEEEECChH-HhcccCCCcEEEEEEeccccccCCCCccEEEeccCC-C--CCeEE Confidence 45888888 456888865432 344433 2223345 899999999876 2 23456666542 2 22344 Q ss_pred EEcccccCceeEEEEEEecccccceeeeEe------eeccCCCCeeEEEEEEe-CCeEEEEEcCccceeeeccCC----- Q FBpp0290327 120 HLSPVVKNSYNVSLVYTQADQNIGRKLASF------GVAHVPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTRE----- 187 (1008) Q Consensus 120 ~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF------~v~l~dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~----- 187 (1008) .+... .+.+...+..+. .+...| .+++. ++||+|++.+. ...++||||-+++.+..+... T Consensus 106 ~l~~n-----~l~ws~~d~~G~--~~~iwfdy~~~~~~~l~-n~W~HVAvTyD~~g~~kiYINGelv~s~~i~~~~~i~~ 177 (424) T 3n7l_A 106 GIISN-----FLVFTLKQNENS--EQDINFSYDISKNAAGY-NKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINF 177 (424) T ss_dssp EEETT-----EEEEEEEEETTE--EEEEEEECCGGGCTTCC-CSCEEEEEEEETTSEEEEEETTEEEEEEECCCCTTCCC T ss_pred EeCCC-----ceEEEEecCCCc--cceeeecccccccCCCC-CceEEEEEEECCCCCEEEEECCEEeeeeeecccccccc Confidence 44322 233333322211 121222 23445 99999999999 778899999998877543211 Q ss_pred CceeeccCCceEEEEeccccc-CCceeeeeeeeEEecCccccc Q FBpp0290327 188 PIELVFDSASTLYIGQAGSII-GGKFEGYLEKINVYGNPDAIN 229 (1008) Q Consensus 188 ~~~l~~~~~~~l~IGq~g~~~-~~~F~G~LQ~l~i~~dp~~a~ 229 (1008) +..+.+.....+.||+. .. +..|.|.|.+|+|+..+..++ T Consensus 178 ~~~i~~~~g~~~~iG~~--~~~d~~f~G~IDE~RIynrALTae 218 (424) T 3n7l_A 178 SKTITFQMNKIPNTGLI--TSDSDNINMWIRDFYIFAKELDDK 218 (424) T ss_dssp CSEEEEEEEECTTSCCC--C----CCEEEEEEEEEESSCCCHH T ss_pred CceeeeccCcceeeccc--ccCCCCCcEEEeEEEEECCcCCHH Confidence 01111111111222332 11 345899999999999875543No 44>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Probab=96.97 E-value=0.0074 Score=79.53 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=81.6 Q ss_pred EEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEe-eeccCCCCeeEEEEEEeC Q FBpp0290327 89 AILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQVLS 167 (1008) Q Consensus 89 SilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV~g 167 (1008) .|.+.|| ++...++||.|.+......+|.|.|..- .|.|.|..... ...+.+ ...+.||+||+|.|.-.+ T Consensus 1084 ~i~l~fr-T~~~~g~Ll~~~s~~~~~~~l~l~l~~G-----~l~~~~~~g~~---~~~~~~~~~~v~DG~wH~v~~~r~~ 1154 (1245) T 3qcw_A 1084 RLAIGFS-TVQKEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTD---DIAIEESNAIINDGKYHVVRFTRSG 1154 (1245) T ss_dssp EEEEEEE-BCCSSEEEEEEEECTTCCCEEEEEEETT-----EEEEEEESSSC---CEEEECCSCCCBSSSCEEEEEEEET T ss_pred eEEEEEE-EecCCeEEEEEeccCCCCceEEEEEECC-----EEEEEEECCCC---ceEeecCceEcCCCcEEEEEEEEcC Confidence 4555555 3466789999987543356788887643 37777764321 222333 467889999999999999 Q ss_pred CeEEEEEcCccceeeeccCCCceeeccCCceEEEEecccccCCceeeeeeeeEEec Q FBpp0290327 168 DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYG 223 (1008) Q Consensus 168 ~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~ 223 (1008) ..++|+||=..+.+. +........+.....||||.. .....|+|-|+.|+|-. T Consensus 1155 ~~~~l~VD~~~~~~~-~~~g~~~~~~~~~~~l~lGg~--~~~~~F~Gcl~~v~~n~ 1207 (1245) T 3qcw_A 1155 GNATLQVDSWPVIER-YPAGRQLTIFNSQATIIIGGK--EQGQPFQGQLSGLYYNG 1207 (1245) T ss_dssp TEEEEEETTSCCEEE-CCCSCCCCCBCSEEEEEESST--TTTCCCCEEEEEEEETT T ss_pred CEEEEEECCccceee-cCCCcceEEeecCCeEEECCc--cCCCCceEEEeEEEECC Confidence 999999998765442 221111112344678999865 23467999999999743No 45>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Probab=96.96 E-value=0.013 Score=73.65 Aligned_cols=155 Identities=11% Similarity=0.165 Sum_probs=90.5 Q ss_pred CcEEEeccCCCCcceEecCCCc-cCCCcccccCCcCC-ceEEEEEEeec-CCCCc-eEEEEEecCCCeeEEEEEEccccc Q FBpp0290327 51 AGIEFGEAEDGFPAFRFLQTAD-VKSPYRMLLPEKLY-EFAILITFRQS-SLKGG-YLFSVVNPLDTVVQLGVHLSPVVK 126 (1008) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~-l~~pt~~~fP~~~~-eFSilaTlR~~-~~~~g-~LfsV~~~~~~~~qlgL~ls~~~~ 126 (1008) .+++++.|..+ .|+.|..... +..|...++ ..+. +|||.+++|+. ....+ .+|+-.+. ... +.|.+... T Consensus 867 G~~sfvdGv~G-kAL~FDGSs~yV~LPn~li~-nS~tdsFTVSFWVK~lge~Ta~ttIISs~dn-nsG--WeIsL~nn-- 939 (1196) T 3v0a_B 867 KDIGLVYGINS-DALYLNGSNQSISFSNDFFE-NGLTNSFSIYFWLRNLGKDTIKSKLIGSKED-NCG--WEIYFQDT-- 939 (1196) T ss_dssp TTCEEEECSSS-EEEEECSSSCCEEEECGGGG-CCSSCCEEEEEEEEECCCCCSCEEEEEEEET-TEE--EEEEEETT-- T ss_pred CCceecCCCcC-ceEEEcCCccEEECCCcccc-cCCCCcEEEEEEeccCCccCccceEEecCCC-CCC--ceEEEcCC-- Confidence 35778777554 5899976543 444443332 1234 89999999994 22212 25543332 111 23334332 Q ss_pred CceeEEEEEEecccccceeeeEeeeccCCCCeeEEEEEEe--CCeEEEEEcCccceeeeccCCCceeeccCCceEE-EEe Q FBpp0290327 127 NSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLY-IGQ 203 (1008) Q Consensus 127 ~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~--g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~-IGq 203 (1008) .+.+...+..+ ..+...|. .+..++||+|++.+. +..++||||-+++.+..+.... ++ ..+..+. +|. T Consensus 940 ---~L~Ws~~DsnG--n~ksI~~D-dI~~GkW~HVAITyDrsG~aVKLYINGeLVas~sisgll-dI--~ssg~IsFIG~ 1010 (1196) T 3v0a_B 940 ---GLVFNMIDSNG--NEKNIYLS-DVSNNSWHYITISVDRLKEQLLIFIDDNLVANESIKEIL-NI--YSSNIISLLSE 1010 (1196) T ss_dssp ---EEEEEEECTTC--CEEEEEEC-SCCSSSCEEEEEEEETTTTEEEEEETTEEEEEEECTTCC-CC--CCCSEEEECCT T ss_pred ---ceEEEEEeCCC--ccceeecc-CCCCCCeEEEEEEEeCCCCEEEEeECCEEccccccccCc-cc--ccCCceeEecc Confidence 24444443322 12333443 556899999999998 5667999999998876544321 22 1233343 332 Q ss_pred cccccCCceeeeeeeeEEecCcccc Q FBpp0290327 204 AGSIIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 204 ~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) . |.|.|-+|+|+..+..+ T Consensus 1011 n-------FnG~IDEVRIYNRALSa 1028 (1196) T 3v0a_B 1011 N-------NPSYIEGLTILNKPTTS 1028 (1196) T ss_dssp T-------CCEEEEEEEEESSCCCH T ss_pred c-------CCcEeeeEEEECCcCCH Confidence 1 99999999999886544No 46>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics center for infectious disease, ssgcid, botulinum neurotoxin; 1.56A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 4f83_A* 3ogg_A 3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A Probab=96.91 E-value=0.015 Score=66.18 Aligned_cols=166 Identities=13% Similarity=0.197 Sum_probs=101.3 Q ss_pred CcEEEeccCCCCcceEecCCCc---cCCCcccccCCcCC-ceEEEEEEeecCCCC--ceEEEEEecCCCeeEEEEEEccc Q FBpp0290327 51 AGIEFGEAEDGFPAFRFLQTAD---VKSPYRMLLPEKLY-EFAILITFRQSSLKG--GYLFSVVNPLDTVVQLGVHLSPV 124 (1008) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~---l~~pt~~~fP~~~~-eFSilaTlR~~~~~~--g~LfsV~~~~~~~~qlgL~ls~~ 124 (1008) -.|+++.| -..||.|..... |.+ +..++-+.++ +|||.+++|..+.+. -..++|.+.-....-..|.+... T Consensus 31 G~v~~~~G--~g~A~~L~gs~~~~~i~~-~ndii~n~~~nsFSIsFWvr~~k~~t~~~~~~tIin~k~~nsGW~Isl~~n 107 (420) T 3pme_A 31 GDVQVNTI--YTNDFKLSSSGDKIIVNL-NNNILYSAIYENSSVSFWIKISKDLTNSHNEYTIINSIKQNSGWKLCIRNG 107 (420) T ss_dssp SCCEESSS--STTEEEECSTTCEEEEEC-CGGGGSSGGGTEEEEEEEEEECHHHHTCCSEEEEEEEEETTEEEEEEEETT T ss_pred CceEEEec--CCcEEEecCCCccEEEec-CcchhhccccCceEEEEEEECCCccccCCCceEeEeeccCCCCeEEEECCC Confidence 55788888 467899876655 333 3445566777 999999999865411 23444443322223334444433 Q ss_pred ccCceeEEEEEEecccccceeeeEee----eccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCceeeccCCc Q FBpp0290327 125 VKNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIELVFDSAS 197 (1008) Q Consensus 125 ~~~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~ 197 (1008) .+.+-..+.. ..++...|+ ..+. .++||+|+++|. -..+++|+|-+++.+..+.-. ..+ -.+. T Consensus 108 -----~liw~l~dsn--gn~~~i~f~y~~~~~I~d~~nkW~~VtIs~Drlg~~~IYING~lv~sk~I~~l-g~I--~~sn 177 (420) T 3pme_A 108 -----NIEWILQDIN--RKYKSLIFDYSESLSHTGYTNKWFFVTITNNIMGYMKLYINGELKQSERIEDL-DEV--KLDK 177 (420) T ss_dssp -----EEEEEEECTT--SCEEEEEEECSTTTCTTSCTTSCEEEEEEEETTSEEEEEETTEEEEEEECTTS-CCC--CCCS T ss_pred -----eEEEEEEecC--CceeeEEEecccccccccccCceEEEEEEECCCCCEEEEECCEEeeecchhhc-ccc--ccCC Confidence 1333333322 233444553 1222 389999999999 567899999999998876542 222 2234 Q ss_pred eEEEEecccccCCceeeeeeeeEEecCcccccc Q FBpp0290327 198 TLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1008) Q Consensus 198 ~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1008) .+.|+-.+ .....|.+.|.+|+|+..+-...+ T Consensus 178 ~i~l~v~~-~~d~~~~~~Id~f~Ifnk~Lt~~E 209 (420) T 3pme_A 178 TIVFGIDE-NIDENQMLWIRDFNIFSKELSNED 209 (420) T ss_dssp EEEESCCS-CCCTTCCEEEEEEEEESSCCCHHH T ss_pred eEEEEEcc-cCCCccceeeeeEEEecccCCHHH Confidence 55555432 234568899999999998855433No 47>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 3fuq_A Probab=96.80 E-value=0.087 Score=59.72 Aligned_cols=163 Identities=8% Similarity=0.128 Sum_probs=102.2 Q ss_pred CCcEEEeccCCCCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCCC-------CceEEEEEecCCCeeEE Q FBpp0290327 50 FAGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLK-------GGYLFSVVNPLDTVVQL 117 (1008) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~-------~g~LfsV~~~~~~~~ql 117 (1008) ...|.+|.| . .-|+.|..... |.+ +..++-+.+. +|||.+++|..+.. .-+||.-.+. ++. -. T Consensus 29 ~g~v~lv~g-~-~~a~~L~~s~~s~i~I~~-~ndii~n~~~~nFSIsFWvri~k~~t~~n~~~e~tII~~~~~-nNs-GW 103 (413) T 3rsj_A 29 NGDVYIYST-N-RNQFGIYSSKPSEVNIAQ-NNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRN-NNS-GW 103 (413) T ss_dssp EECCEECSS-C-TTEEEEESSSSEEEEEEC-CTTTCCCCSSCCEEEEEEEECCCCCSGGGTTCCEEEEEEEET-TTE-EE T ss_pred CCceEEEec-C-CcEEEEccCCCcceEEec-CcceeeccccCcEEEEEEEEcCCcccccccCCcceEEEeeec-CCC-Cc Confidence 356788888 3 46677755444 433 3455556677 99999999986552 2458877743 222 22 Q ss_pred EEEEcccccCceeEEEEEEecccccceeeeEee----eccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCce Q FBpp0290327 118 GVHLSPVVKNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIE 190 (1008) Q Consensus 118 gL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~~~~ 190 (1008) .|.+... .+.+-..+.. ..++.+-|. +.+. -++||.|+++|. -....+|||-+++.+..+.-.. + T Consensus 104 ~Isl~~n-----~liWtl~Ds~--g~~k~i~f~y~~~~~i~dyiNkW~~VtIt~dRlg~a~IYINGkLi~~~~I~~l~-~ 175 (413) T 3rsj_A 104 KISLNYN-----KIIWTLQDTA--GNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLG-D 175 (413) T ss_dssp EEEEETT-----EEEEEEECTT--SCEEEEEEECCSBSSSCSSTTSEEEEEEEECTTSEEEEEETTEEEEEEECTTCC-C T ss_pred EEEECCC-----eEEEEEEcCC--CcceeEEEecccccchhhccCceEEEEEEEcCCCceEEEECCEEeeccChhhhc-c Confidence 2333332 2344444332 233545554 2222 389999999999 6788999999999987665421 2 Q ss_pred eeccCCceEEEEecccccCCceeeeeeeeEEecCccccc Q FBpp0290327 191 LVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAIN 229 (1008) Q Consensus 191 l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~ 229 (1008) + ..+..+.|+--+. .+..| +.|.+|+|+..+-... T Consensus 176 I--~ss~~I~~~vd~~-~d~~~-~~Id~l~If~k~Lt~~ 210 (413) T 3rsj_A 176 I--HVSDNILFKIVGC-NDTRY-VGIRYFKVFDTELGKT 210 (413) T ss_dssp C--CCCSEEEEEEESC-CSSCE-EEEEEEEEESSCCCHH T ss_pred e--eecCeEEEEeccc-CCCce-EEEeeEEEecccCCHH Confidence 3 3355666664322 34478 9999999999885543No 48>2nyy_A Botulinum neurotoxin type A; botulinum, neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A Probab=96.61 E-value=0.061 Score=67.70 Aligned_cols=165 Identities=9% Similarity=0.149 Sum_probs=101.5 Q ss_pred CCcEEEeccCCCCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCCCCc----eEEEEEecCCCeeEEEEE Q FBpp0290327 50 FAGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLKGG----YLFSVVNPLDTVVQLGVH 120 (1008) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g----~LfsV~~~~~~~~qlgL~ 120 (1008) ...|+++.| -..||.|..... |.+ ...++-+.++ +|||.+++|..+.+.. ..++|.+.-....-+.|. T Consensus 900 ~G~V~~v~G--ngnA~~L~gs~~S~~~I~~-~ndii~n~~~~nFSISFWvRipk~~~~~n~~~eyTIIn~k~nNsGW~I~ 976 (1295) T 2nyy_A 900 GSKVNFDPI--DKNQIQLFNLESSKIEVIL-KNAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVS 976 (1295) T ss_dssp CTTEEECTT--CTTCEEEESSTTSCEEEEE-CGGGCCTTTTSEEEEEEEEECCCCCSGGGGGCCEEEEEEEETTEEEEEE T ss_pred CCceEEEec--CCcEEEecCCCCcceEEec-CcchhcccccCceEEEEEEEcCCCCcccccCCceeeEeeccCCCCeEEE Confidence 456778877 457888855333 332 4455667778 9999999998776632 245555332222334444 Q ss_pred EcccccCceeEEEEEEecccccceeeeEee------eccCCCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCceeec Q FBpp0290327 121 LSPVVKNSYNVSLVYTQADQNIGRKLASFG------VAHVPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIELVF 193 (1008) Q Consensus 121 ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~------v~l~dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~~~~l~~ 193 (1008) +... .+.+-.. +.....+...|+ ++-..++||+|+++|. -...++|+|-+++.+..+.-. .++. T Consensus 977 L~~n-----~liWtl~--DsNgn~k~i~f~y~~~~~I~dyiNkW~hVTIt~DRlg~a~IYINGkLv~sk~I~~L-g~I~- 1047 (1295) T 2nyy_A 977 LNYG-----EIIWTLQ--DTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNL-GNIH- 1047 (1295) T ss_dssp EETT-----EEEEEEE--CSSSCEEEEEEECCSBSSSCSSTTSCEEEEEEEETTSEEEEEETTEEEEEEECTTC-CCCC- T ss_pred eCCC-----cEEEEEE--ecCCcceeeEEecccccCcccccCceEEEEEEECCCCCeEEEECCEEeeccccccC-Ccee- Confidence 4433 1333332 222223434443 1212389999999999 567799999999999877553 3332 Q ss_pred cCCceEEEEecccccCCceeeeeeeeEEecCcccc Q FBpp0290327 194 DSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 194 ~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) .+..+.++--+ +.+..|.+.|.+|+|+..+-.. T Consensus 1048 -ssn~Is~gv~g-~~d~n~~g~ID~F~IfnK~Lt~ 1080 (1295) T 2nyy_A 1048 -ASNNIMFKLDG-CRDTHRYIWIKYFNLFDKELNE 1080 (1295) T ss_dssp -CCSEEEEEEES-CCCTTCEEEEEEEEEESSCCCH T ss_pred -ecCeEEEEEec-cCCCCceeeEeeEEEecCcCCH Confidence 24455555332 3557799999999999987554No 49>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 4kbb_A* 2nm1_A 1f82_A ... Probab=96.55 E-value=0.071 Score=67.98 Aligned_cols=153 Identities=9% Similarity=0.186 Sum_probs=91.4 Q ss_pred CCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCC-CC---------ceEEEEEecCCCeeEEEEEEcccc Q FBpp0290327 61 GFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSL-KG---------GYLFSVVNPLDTVVQLGVHLSPVV 125 (1008) Q Consensus 61 ~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~-~~---------g~LfsV~~~~~~~~qlgL~ls~~~ 125 (1008) ...|+.|..... |..|...++ +... +|||.+++|+... .. ..+|+-.+. ...-.+. +... T Consensus 894 ~GkAl~FdGssgS~I~V~LPnnli~-ns~~d~FTISFWVK~~s~~t~~i~~f~~ne~tfIs~~~n-nsGW~IS--Ledn- 968 (1290) T 1epw_A 894 DKNQFKLTSSANSKIRVTQNQNIIF-NSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKN-NSGWKIS--IRGN- 968 (1290) T ss_dssp TTSEEEECSSTTCCEEEECCTTSSC-CCSSCCEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEET-TEEEEEE--EETT- T ss_pred cCceEEecCCCCcceEEEcCccccc-CCCCCCEEEEEEeccccccCccccccccccceEEecccC-CCCceEE--ecCC- Confidence 457888876543 444433222 2234 8999999999775 22 234544432 2222333 3221 Q ss_pred cCceeEEEEEEecccccceeeeEee----eccC--CCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeccCCceE Q FBpp0290327 126 KNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTL 199 (1008) Q Consensus 126 ~~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l 199 (1008) .+.+...+..+ ......|. ..+. .++||+|++++....+++|||-+++.+..+.... ++ .....+ T Consensus 969 ----tL~wsl~DsnG--n~~~Iwfd~~t~~~Ipdy~NkW~HVAITyD~g~vKIYINGeLVas~sitgL~-dI--~ss~~I 1039 (1290) T 1epw_A 969 ----RIIWTLIDING--KTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDIR-EV--IANGEI 1039 (1290) T ss_dssp ----EEEEEEECTTC--CEEEEEEECCSSCSSCSSTTSCEEEEEEECSSEEEEEETTEEEEEEECSSCC-CC--CCCSEE T ss_pred ----eEEEEEecCCC--CcceeEEecccccCCCCCCCceEEEEEEEcCCeEEEEECCEEeeccccccCc-cc--cccCee Confidence 24444433221 11122232 2222 5999999999999999999999998886544321 23 234578 Q ss_pred EEEecccccCCceeeeeeeeEEecCcccc Q FBpp0290327 200 YIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 200 ~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) .||..+. ....|.|.|.+|+|+..+..+ T Consensus 1040 ~LGv~n~-~D~~F~G~IDEfRIYNRALSa 1067 (1290) T 1epw_A 1040 IFKLDGD-IDRTQFIWMKYFSIFNTELSQ 1067 (1290) T ss_dssp EEEEEES-CCTTCCEEEEEEEEESSCCCH T ss_pred EEEecCC-CCcCcceEeeeEEEECCcCCH Confidence 8888632 446699999999999987544No 50>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Probab=96.41 E-value=0.04 Score=68.13 Aligned_cols=136 Identities=16% Similarity=0.179 Sum_probs=87.4 Q ss_pred CCceEEEEEEeecC-CCCceEEEEEecCC--CeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeec------cCC Q FBpp0290327 85 LYEFAILITFRQSS-LKGGYLFSVVNPLD--TVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVA------HVP 155 (1008) Q Consensus 85 ~~eFSilaTlR~~~-~~~g~LfsV~~~~~--~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~------l~d 155 (1008) |.+|+|.+.||... .+...||++.+... ...+|-|.+.... ++.|+.+..+... ...+..+ ..+ T Consensus 34 l~~~Tv~~~~~~~~~~~~~~Lfs~~~~t~~~~n~~~~l~~~~~g----~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~ 106 (679) T 2sli_A 34 MTQGTIILSYKSTSENGIQSLFSVGNSTAGNQDRHFHIYITNSG----GIGIELRNTDGVF---NYTLDRPASVRALYKG 106 (679) T ss_dssp CSSEEEEEEEEECCCCSEEEEEEEECCSTTCTTEEEEEEEETTS----CEEEEEEECTTTC---EEEEEESSCCCSEETT T ss_pred ccccEEEEEEEECCCCCceEEEEecCCCCCCccccEEEEEeCCC----EEEEEEecCCCce---eEEEecCcccceeccC Confidence 34999999999987 45556999996432 2367888886531 3666665543211 1122222 124 Q ss_pred C-CeeEEEEEEeC--CeEEEEEcCccceeeeccCCCcee-eccCCceEEEEecc-c-ccCCceeeeeeeeEEecCcccc Q FBpp0290327 156 D-KWNSIALQVLS--DKVSFYYDCELRNTTLVTREPIEL-VFDSASTLYIGQAG-S-IIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 156 g-~WHrlaLsV~g--~~VtLyVDC~~~~t~~l~r~~~~l-~~~~~~~l~IGq~g-~-~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) + .||+|+++... ..++||||-..+.+..+... ..+ .+..-..++||+.- . .....|.|+|.++.|+...... T Consensus 107 ~~~w~hv~~t~ds~~g~~~lyvnG~~~~~~~~~~~-~~~~~~~g~~~~~iG~~~~~g~~~~~f~G~I~dv~v~~~~ls~ 184 (679) T 2sli_A 107 ERVFNTVALKADAANKQCRLFANGELLATLDKDAF-KFISDITGVDNVTLGGTKRQGKIAYPFGGTIGDIKVYSNALSD 184 (679) T ss_dssp EECCEEEEEEEETTTTEEEEEETTEEEEEEECSSC-CCGGGSTTCCEEEESSEEETTEEESCCCEEEEEEEEESSCCCH T ss_pred CCceEEEEEEEecCCCeEEEEECCEEEEeccCCcc-eeeccCCCcceEEECCeeCCCcccceEeeEEEEEEEcCCCCCH Confidence 3 79999999965 58999999999877655422 111 12334589999841 1 1122499999999999876544No 51>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Probab=96.39 E-value=0.026 Score=74.44 Aligned_cols=122 Identities=16% Similarity=0.285 Sum_probs=79.6 Q ss_pred ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeE--eeeccCCCCeeEEEEE Q FBpp0290327 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS--FGVAHVPDKWNSIALQ 164 (1008) Q Consensus 87 eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~s--F~v~l~dg~WHrlaLs 164 (1008) ++.|.+.||... ..|.||.... +...+|.|+|..- .|.|.|....+. ..++ -...+.||+||+|.|. T Consensus 859 ~~~is~~frT~~-~~GlLl~~~~--~~~dfl~l~L~~G-----~l~~~~~~g~g~---~~~~~~s~~~vnDG~WH~V~~~ 927 (1245) T 3qcw_A 859 SMHLFFQFKTTS-LDGLILYNSG--DGNDFIVVELVKG-----YLHYVFDLGNGA---NLIKGSSNKPLNDNQWHNVMIS 927 (1245) T ss_dssp CEEEEEEEECSC-SCEEEEEEEE--STTCEEEEEEETT-----EEEEEEESSSCC---EEEECCCSSCSCSSSCEEEEEE T ss_pred eEEEEEEEEECC-CCEEEEEeCC--CCCceEEEEEECC-----EEEEEEECCCCc---EEEEecCccccCCCCeEEEEEE Confidence 778888888665 4567776554 2357888888654 377777643321 2222 2567889999999999 Q ss_pred EeCCe-EEEEEcCccceeeeccCCCceeeccCCceEEEEecccc----------cCCceeeeeeeeEEec Q FBpp0290327 165 VLSDK-VSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI----------IGGKFEGYLEKINVYG 223 (1008) Q Consensus 165 V~g~~-VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~----------~~~~F~G~LQ~l~i~~ 223 (1008) ....+ .+|.||-.......-. ... ++....||||-.... ....|+|=|++|+|-- T Consensus 928 ~~~~~~~~L~VD~~~~~~~~~~--~~~--l~~~~~lyvGG~~~~~~~~~~~~~~~~~~F~GCi~~l~ing 993 (1245) T 3qcw_A 928 RDTSNLHTVKIDTKITTQITAG--ARN--LDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNG 993 (1245) T ss_dssp ECTTCEEEEEETTEEEEEECCC--CCC--CCEEEEEEESCCCGGGGGGCCTTCCCSSBCCEEEEEEEETT T ss_pred EcCCceEEEEECCEeeeeecCC--cce--eccCCCeEEccccccccccchhhcccccCccceecceeECC Confidence 98876 5899998754332111 112 233567999864210 1246999999999953No 52>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease, recepto secreted, binding domain, metalloprotease; 1.90A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 3mpp_G Probab=96.14 E-value=0.13 Score=58.95 Aligned_cols=164 Identities=12% Similarity=0.188 Sum_probs=99.8 Q ss_pred CCcEEEeccCCCCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCC-CC---------ceEEEEEecCCCe Q FBpp0290327 50 FAGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSL-KG---------GYLFSVVNPLDTV 114 (1008) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~-~~---------g~LfsV~~~~~~~ 114 (1008) ...|.+|. - ..-||.|..... |.+ ...+|-+.+. +|||.+++|..+. +. -+||.-.+- ... T Consensus 76 ~g~V~lv~-i-n~na~~L~~s~~s~i~I~~-~ndiiyN~~~~nFSIsFWvRipk~~t~~tn~y~~nEyTII~~~~n-NsG 151 (482) T 2vxr_A 76 GSDVIFND-I-GNGQFKLNNSENSNITAHQ-SKFVVYDSMFDNFSINFWVRTPKYNNNDIQTYLQNEYTIISCIKN-DSG 151 (482) T ss_dssp CTTCEEEC-S-TTCEEEEESSTTCCEEEEC-CTTTSCEESSCCEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEET-TEE T ss_pred CCceEEEE-c-cCcEEEecCCCCcceEEEc-ccceeeccccCceEEEEEEEcCCcccccccccccCCceEEEeecC-CCC Confidence 45566665 2 345666644433 333 3455556677 9999999998654 22 257755542 323 Q ss_pred eEEEEEEcccccCceeEEEEEEecccccceeeeEee----eccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCC Q FBpp0290327 115 VQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTRE 187 (1008) Q Consensus 115 ~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~ 187 (1008) -.++ +... .|.+-..+.. ..++.+-|. +.+. -++||.|+++|. -..+.+|||-+++.+..+.-. T Consensus 152 W~Is--l~~n-----~LIWtl~Ds~--g~~k~I~f~y~~~~nisdyiNkW~fITITndRlGna~IYINGkLi~~~~I~~L 222 (482) T 2vxr_A 152 WKVS--IKGN-----RIIWTLIDVN--AKSKSIFFEYSIKDNISDYINKWFSITITNDRLGNANIYINGSLKKSEKILNL 222 (482) T ss_dssp EEEE--EETT-----EEEEEEECTT--SCEEEEEEECCSCCSSCSSTTSCEEEEEEECTTSEEEEEETTEEEEEEECTTC T ss_pred cEEE--ECCC-----eEEEEEEcCC--CcceeEEEecccccchhhccCceEEEEEEEcCCCceEEEECCEEeeccChhhh Confidence 3333 3332 2344443322 233545564 2222 389999999999 678899999999988766432 Q ss_pred CceeeccCCceEEEEecccccCCceeeeeeeeEEecCcccccc Q FBpp0290327 188 PIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1008) Q Consensus 188 ~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1008) . .+-.+..+.|+--+ ..+..|.+.|.+|+|+..+-...+ T Consensus 223 -~--~I~~s~~I~fgvdn-~~D~n~~i~Id~l~If~keLt~~E 261 (482) T 2vxr_A 223 -D--RINSSNDIDFKLIN-CTDTTKFVWIKDFNIFGRELNATE 261 (482) T ss_dssp -C--CEECCSEEEEEEES-CCCTTCEEEEEEEEEESSCCCHHH T ss_pred -c--ccccCCeEEEEecc-CCCCCceeEEeeEEEecccCCHHH Confidence 1 22345566666432 245669999999999998855433No 53>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E, botulism, domain organization, endopeptidase, translocation, hydrolase; 2.65A {Clostridium botulinum} Probab=94.65 E-value=1 Score=56.93 Aligned_cols=161 Identities=8% Similarity=0.072 Sum_probs=94.1 Q ss_pred CcEEEeccCCCCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCCC-------C-ceEEEEEecCCCeeEE Q FBpp0290327 51 AGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLK-------G-GYLFSVVNPLDTVVQL 117 (1008) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~-------~-g~LfsV~~~~~~~~ql 117 (1008) ..|.+|.| . .-|+.|..... +.+ ...+|-+.+. +|||.+++|..+.+ + -+||.-.+. ++ .-. T Consensus 876 g~V~lv~G-n-~na~~L~ss~~s~~~I~~-~ndii~n~~~~nFSIsFWvRipk~~~~~~n~~neyTII~~~~~-nN-sGW 950 (1252) T 3ffz_A 876 GDVYKYPT-N-KNQFGIYNDKLSEVNISQ-NDYIIYDNKYKNFSISFWVRIPNYDNKIVNVNNEYTIINCMRD-NN-SGW 950 (1252) T ss_dssp ECCEECTT-C-TTCEEEESSSCEEEEEEC-CTTTSCCSSCCCCEEEEEEECCCCCSTTTCCCCCEEEEEEEET-TT-EEE T ss_pred CceEEEec-C-CceEEeccCCCCceEEec-CcceeeccccCceEEEEEEEcCCcCCcccccCCcceEEEeecC-CC-CCc Confidence 44566666 3 45666654332 443 3445556677 99999999985441 1 357765533 22 222 Q ss_pred EEEEcccccCceeEEEEEEecccccceeeeEeeecc------CCCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCce Q FBpp0290327 118 GVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAH------VPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIE 190 (1008) Q Consensus 118 gL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l------~dg~WHrlaLsV~-g~~VtLyVDC~~~~t~~l~r~~~~ 190 (1008) .+-+... .+.+-..+.. ..++.+-|++.+ .-++||.|+++|. -....+|||-+++....+.-. .+ T Consensus 951 ~I~l~~n-----~LiWtl~Dsn--gn~k~i~f~y~~~~~i~dyiNkW~fITIt~dRlg~a~IYINGkLi~~~~I~~l-~~ 1022 (1252) T 3ffz_A 951 KVSLNHN-----EIIWTLQDNA--GINQKLAFNYGNANGISDYINKWIFVTITNDRLGDSKLYINGNLIDQKSILNL-GN 1022 (1252) T ss_dssp EEEEETT-----EEEEEEECSS--SCEEEEEEECCCCSBCCSSTTSCEEEEEEECTTSEEEEEETTEEEEEEECTTC-CC T ss_pred EEEeCCC-----eEEEEEEcCC--CcceeEEEecccccccccccCceEEEEEEEcCCCceeEEECCEEeeccchhhc-cc Confidence 2233222 2333333322 233444554211 1389999999999 577899999999998766543 22 Q ss_pred eeccCCceEEEEecccccCCceeeeeeeeEEecCcccc Q FBpp0290327 191 LVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1008) Q Consensus 191 l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1008) + ..+..+.++=-+.. +. ..+.|.+|+|+..+-.. T Consensus 1023 I--~ss~~I~~kl~g~n-d~-~~v~Id~l~If~k~Lt~ 1056 (1252) T 3ffz_A 1023 I--HVSDNILFKIVNCS-YT-RYIGIRYFNIFDKELDE 1056 (1252) T ss_dssp C--CCCSEEEEEEESCS-SC-CEEEEEEEEEESSCCCH T ss_pred c--eecCeEEEEecCCC-CC-cceeEeeeEeecCcCCH Confidence 3 33555555333322 22 46899999999987554No 54>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Probab=94.06 E-value=0.25 Score=50.60 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=58.5 Q ss_pred ceEEEEEEeecC----CCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEE Q FBpp0290327 87 EFAILITFRQSS----LKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIA 162 (1008) Q Consensus 87 eFSilaTlR~~~----~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrla 162 (1008) +|.|-+.+|... .+.|++|.+.. +....+.+.+.... ..+.|+- ..++. ...++.....+..++|+++. T Consensus 65 df~l~~e~k~~~~~~~~nsGi~~r~~~--d~~~~Y~~~i~~~~---~~~~l~~-~~~g~-~~~l~~~~~~~~~g~W~~~~ 137 (185) T 4b1m_A 65 DFTYESDITIKDGNGRGAGALMFRSDK--DAKNGYLANVDAKH---DLVKFFK-FENGA-ASVIAEYKTPIDVNKKYHLK 137 (185) T ss_dssp SEEEEEEEEEEEEEEEEEEEEEEEECT--TSSSEEEEEEETTT---TEEEEEE-EETTE-EEEEEEEECCCCSSCCEEEE T ss_pred CEEEEEEEEEccCCCCccEEEEEEecC--CCCCeEEEEEECCC---CEEEEEE-ecCCc-eeEeeeccccCCCCCeEEEE Confidence 999999999865 46678887632 33355666666541 1344433 22221 12233333445579999999 Q ss_pred EEEeCCeEEEEEcCccceee Q FBpp0290327 163 LQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 163 LsV~g~~VtLyVDC~~~~t~ 182 (1008) |.|.+++|++|||-+++.+. T Consensus 138 I~~~G~~i~v~vNG~~v~~~ 157 (185) T 4b1m_A 138 TEAEGDRFKIYLDDRLVIDA 157 (185) T ss_dssp EEEETTEEEEEETTEEEEEE T ss_pred EEEECCEEEEEECCEEEEEE Confidence 99999999999999887654No 55>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... Probab=89.77 E-value=5.1 Score=49.21 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=70.3 Q ss_pred ceEEEEEEeecC--CCCceEEEEE-ecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEEEE Q FBpp0290327 87 EFAILITFRQSS--LKGGYLFSVV-NPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIAL 163 (1008) Q Consensus 87 eFSilaTlR~~~--~~~g~LfsV~-~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaL 163 (1008) +|+|+||+-... +..-.|+-+. +...+...|+|..+... + -.+.|.... . .. ...---++=|+|+| T Consensus 495 ~ftlvatv~i~~~p~~~~pl~g~~~~~~~~~~~~glsy~~~~--~--w~~~~~~~~--~-~~----~~~w~~~~~~qv~l 563 (648) T 1ms9_A 495 AFTLVASVTIHEVPKGASPLLGASLDSSGGKKLLGLSYDKRH--Q--WQPIYGSTP--V-TP----TGSWEMGKRYHVVL 563 (648) T ss_dssp EEEEEEEEEECSCCSSCEEEEEEESSSSSSSEEEEEEECTTS--C--EEEEETTSC--C-CC----BSCCCTTCEEEEEE T ss_pred cEEEEEEEEEecCCCCCCceeEEEeccCCCcEEEEEEEeCCC--c--EEEEeCCCC--c-cc----cccccCCceEEEEE Confidence 999999998743 3222344443 22233445555554331 2 223332110 0 00 11122456699999 Q ss_pred EEeCCeEEEEEcCccce-e--eeccCCCceeeccCCceEEEEeccccc-CCceeeeeeeeEEecCccc Q FBpp0290327 164 QVLSDKVSFYYDCELRN-T--TLVTREPIELVFDSASTLYIGQAGSII-GGKFEGYLEKINVYGNPDA 227 (1008) Q Consensus 164 sV~g~~VtLyVDC~~~~-t--~~l~r~~~~l~~~~~~~l~IGq~g~~~-~~~F~G~LQ~l~i~~dp~~ 227 (1008) .+++.+.++|||-+.+. . ..+.- .. ...-+.||||-.+... .......+.++.||-.|.- T Consensus 564 ~l~~~~~s~yvdg~~~~~~~~~~~~~-~~---~~~ishfy~gg~~~~~~~~~~~vtv~nv~lynr~l~ 627 (648) T 1ms9_A 564 TMANKIGSVYIDGEPLEGSGQTVVPD-ER---TPDISHFYVGGYKRSGMPTDSRVTVNNVLLYNRQLN 627 (648) T ss_dssp EEETTEEEEEETTEECTTCCEECSCS-SC---CCCCCEEEESSCSCTTSCCCCCEEEEEEEEESSCCC T ss_pred EEeCCEEEEEECCEeccccccccccC-Cc---ccccceEEEcCCCCccCCCCCCEEEEEeEEecCCCC Confidence 99999999999998873 2 22211 11 1134789998764211 2335677889999887744No 56>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Probab=89.38 E-value=0.58 Score=33.77 Aligned_cols=12 Identities=92% Similarity=2.189 Sum_probs=4.7 Q ss_pred CCCCCCCCCCCC Q FBpp0290327 324 PPGPPGPPGPKG 335 (1008) Q Consensus 324 ~pGppGppG~~G 335 (1008) ++|++|++|++| T Consensus 15 ~pG~~G~pG~~G 26 (29) T 1ei8_A 15 PPGPPGPPGPPG 26 (29) T ss_dssp CCCCCCCCCCCC T ss_pred CCCCCCCCCCCC Confidence 333333333333No 57>4ccd_A Galactocerebrosidase; hydrolase, krabbe disease, glycosyl hydrolase, galactosidase D-galactal, lysosomal storage disease, enzyme-intermediate; HET: 2DG NAG; 1.97A {Mus musculus} PDB: 4ccc_A* 4cce_A* 4ufh_A* 4ufi_A* 4ufj_A* 4ufk_A* 4ufl_A* 4ufm_A* 3zr5_A* 3zr6_A* Probab=88.86 E-value=3.1 Score=51.17 Aligned_cols=88 Identities=8% Similarity=-0.031 Sum_probs=57.1 Q ss_pred ceEEEEEEeecCC-CCc--eEEEEEecC---CCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeE Q FBpp0290327 87 EFAILITFRQSSL-KGG--YLFSVVNPL---DTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNS 160 (1008) Q Consensus 87 eFSilaTlR~~~~-~~g--~LfsV~~~~---~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHr 160 (1008) ||+|-+.+|.... +.+ .+|.+.+.. +....+.+.+... + ++.|... .++ ...+++-.+.+..++||+ T Consensus 528 Dy~v~~dv~~~~~~~g~agl~fR~~~~G~~~~~~~gY~~~i~~~--G--~~~l~k~-~~g--~~~La~~~~~~~~~~w~~ 600 (654) T 4ccd_A 528 NMTVQCDVYIETPRSGGVFIAGRVNKGGILIRSATGVFFWIFAN--G--SYRVTAD-LGG--WITYASGHADVTAKRWYT 600 (654) T ss_dssp EEEEEEEEEECSTTTCEEEEEEEECCCGGGGGGCEEEEEEEETT--T--EEEEEEE-TTC--CSEEEEEECSCCTTCEEE T ss_pred cEEEEEEEEeccCCCCeEEEEEEEcCCCCCccccceEEEEEeCC--C--eEEEEEe-cCC--eEEEEeeeccCCCCceEE Confidence 9999999998763 232 445544421 0234566666543 1 2444433 332 224444456777899999 Q ss_pred EEEEEeCCeEEEEEcCcccee Q FBpp0290327 161 IALQVLSDKVSFYYDCELRNT 181 (1008) Q Consensus 161 laLsV~g~~VtLyVDC~~~~t 181 (1008) |.|.|.+++|++|||-+++-+ T Consensus 601 l~v~v~G~~I~v~vdG~~v~~ 621 (654) T 4ccd_A 601 LTLGIKGYFAFGMLNGTILWK 621 (654) T ss_dssp EEEEEETTEEEEEETTEEEEE T ss_pred EEEEEECCEEEEEECCEEEEE Confidence 999999999999999977654No 58>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 4e52_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A ... Probab=83.17 E-value=0.28 Score=49.01 Aligned_cols=11 Identities=27% Similarity=1.047 Sum_probs=6.0 Q ss_pred ccccCCceEEE Q FBpp0290327 954 QSCDSKLIILC 964 (1008) Q Consensus 954 ~~C~~~~~~lC 964 (1008) .+|+..+..+| T Consensus 165 ~~C~~~~~~iC 175 (177) T 1pwb_A 165 RACGEKRLVVC 175 (177) T ss_dssp ECTTSEEEEEE T ss_pred ccCCCCeeEEE Confidence 45555555555No 59>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 4e52_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A ... Probab=77.28 E-value=0.58 Score=46.70 Aligned_cols=7 Identities=0% Similarity=-0.054 Sum_probs=4.4 Q ss_pred eEEecCC Q FBpp0290327 909 MVWHGSL 915 (1008) Q Consensus 909 ~vw~Gs~ 915 (1008) .+|.|++ T Consensus 112 ~~WiGl~ 118 (177) T 1pwb_A 112 AAFLSMT 118 (177) T ss_dssp CEECSCB T ss_pred eEEEeeE Confidence 5666665No 60>3w9a_A CCGH131A, putative uncharacterized protein; beta-jelly roll, hydrolase; 1.99A {Coprinopsis cinerea} Probab=73.47 E-value=16 Score=39.43 Aligned_cols=76 Identities=8% Similarity=0.113 Sum_probs=49.8 Q ss_pred ceEEEEEEeecC-----CCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEecccccceeeeEeeeccCCCCeeEE Q FBpp0290327 87 EFAILITFRQSS-----LKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSI 161 (1008) Q Consensus 87 eFSilaTlR~~~-----~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrl 161 (1008) --.+.+.||++. .+..|+++.... .++.|+.... .+.. .|.|.... + ..|..++.++.||+| T Consensus 93 ~~~~HfSv~~d~~~pln~sheyq~~f~ES----h~felk~G~~-~~~~--~l~~~~~~-----~-~~wstpf~~~~W~NF 159 (245) T 3w9a_A 93 NLFYHFSIKRTNTNAPDPTLEHQVMFFES----HFTELKYGVG-SNPS--NLGWYAGG-----T-ERWSTPFTADTWFNF 159 (245) T ss_dssp EEEEEEEEECCSTTCCCTTSCEEEEEETT----CSEEEEESCS-SCTT--EEEEEETT-----E-EEEEEECCTTCCEEE T ss_pred eEEEEEEEEeccccCCcCccceeeecccc----ceEEEEeCCC-CCCC--cEEEecCC-----c-eEEEeeecCCcEEEE Confidence 455666676633 355677766663 3788888733 2122 35565533 1 567899999999999 Q ss_pred EEEEeC--CeEEEEEc Q FBpp0290327 162 ALQVLS--DKVSFYYD 175 (1008) Q Consensus 162 aLsV~g--~~VtLyVD 175 (1008) |+.|.= +.|++|.- T Consensus 160 Ai~iDf~~nt~~vy~S 175 (245) T 3w9a_A 160 AYDIDFTAKTVGLWAS 175 (245) T ss_dssp EEEEETTTTEEEEEEE T ss_pred EEEeecCCCEEEEEEe Confidence 998854 67888764No 61>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei} Probab=67.20 E-value=1.1e+02 Score=32.62 Aligned_cols=177 Identities=14% Similarity=0.119 Sum_probs=89.0 Q ss_pred CCcEEEecc--CCCCcceEecCCCc---cCCCcccccCCc-CC---ceEEEEEEeec-----CCCCceEEEEEecC-C-- Q FBpp0290327 50 FAGIEFGEA--EDGFPAFRFLQTAD---VKSPYRMLLPEK-LY---EFAILITFRQS-----SLKGGYLFSVVNPL-D-- 112 (1008) Q Consensus 50 ~~GV~~v~G--~d~~pAyrf~~~a~---l~~pt~~~fP~~-~~---eFSilaTlR~~-----~~~~g~LfsV~~~~-~-- 112 (1008) ...|++|.. .++..|+||.-..+ ....-+++.-.. ++ ++.+-+.++.. ......|++..... . T Consensus 21 ~~~i~~v~~~~~~G~~alr~~~~~d~~~~~~~RsE~~~~~~~~~g~~~wy~fs~~lp~d~~~~~~~~~iaQw~~~~~~~~ 100 (238) T 2zzj_A 21 QGTVSEVSNVVFKGTSALKMTQTYTPGYTGRYHSEVDHNRGYQRGEEQFYGFAFRLSEDWQFQPQSYNIAQFIANRPGAG 100 (238) T ss_dssp TCEEEEESSSCSSTTCEEEEEEECCTTCCSCCEEEEEEEEEEETTEEEEEEEEEEECTTCCCCSSEEEEEEEEEECTTCC T ss_pred CCceEEeCccccCCCCEEEEEEeCCCCCCCccceEEeecCCCCCCCcEEEEEEEECCCCCcCCCCceEEEEEEecCCCCC Confidence 456777766 34678888843222 111112222111 22 44444444442 12333455555422 1 Q ss_pred -C----eeEEEEEEcccccCceeEEEEEEecc--cc-cceeeeEe--eeccCCCCeeEEEEEEe-----CCeEEEEEcCc Q FBpp0290327 113 -T----VVQLGVHLSPVVKNSYNVSLVYTQAD--QN-IGRKLASF--GVAHVPDKWNSIALQVL-----SDKVSFYYDCE 177 (1008) Q Consensus 113 -~----~~qlgL~ls~~~~~~~~i~l~Y~~~~--~~-~~q~~~sF--~v~l~dg~WHrlaLsV~-----g~~VtLyVDC~ 177 (1008) + ..-|.|.+.+. + +.+.+.... .. -.+....| ..++.-|+||+|.|.|. ...+.||+|-+ T Consensus 101 ~~~~~~~P~~~l~v~g~---~--l~~r~~~g~~~~~~~~~~~~~~~~~~~~~~G~W~~~vi~v~ws~d~~G~~~vw~nG~ 175 (238) T 2zzj_A 101 CGGDDWMPSTMIWIQNN---Q--LYSRYVNGHYRQPNCGRNIVTRPNLATVSAGAWHRVVLQIKWASDNTGYFKIWFDGA 175 (238) T ss_dssp CSSSSEEEEEEEEEETT---E--EEEEEEEECCBTTBCCEEEEEEEEEEECCTTSCEEEEEEEEECSSTTEEEEEEETTE T ss_pred CCccCCCCceeEEEECC---E--EEEEEecCCccCccccCceeeecccCccCCCCeEEEEEEEEecCCCCEEEEEEECCE Confidence 1 67788887665 2 333332211 11 11233344 24566899999999997 46899999999 Q ss_pred cceeeeccCCCceeeccCCceE--EEEeccccc--CCceeeeeeeeEEecCcccccccCCCC Q FBpp0290327 178 LRNTTLVTREPIELVFDSASTL--YIGQAGSII--GGKFEGYLEKINVYGNPDAINVTCMPP 235 (1008) Q Consensus 178 ~~~t~~l~r~~~~l~~~~~~~l--~IGq~g~~~--~~~F~G~LQ~l~i~~dp~~a~~~C~~~ 235 (1008) ++....=. ...++..... -+|--.... ....+|......|+.|.-..-..|.+. T Consensus 176 ~v~~~~g~----~~~~~d~~~~yfK~GiYr~~w~~~~~~~g~~~~~~iy~D~v~ig~t~~dv 233 (238) T 2zzj_A 176 KVHEEYNV----ATTVDDDSVFQFRVGLYANSWHDDGHMTGTQGFRQVWYDEVAVGTTFADV 233 (238) T ss_dssp EEEEEEEE----CCSBSSCCEEEEEEEEECHHHHHHSSCCSSCCEEEEEEEEEEEESSHHHH T ss_pred EEEEEeCC----ccccCCCCcceEEEEEcCCccccCcccCCCCcceEEEEeCeEEeCcHHHc Confidence 86553211 1112223333 334432211 113455566667777765555566543No 62>4le3_A Beta-glucanase; GH131, hydrolase; 1.80A {Podospora anserina} PDB: 4le4_A* Probab=66.23 E-value=23 Score=38.33 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=49.3 Q ss_pred ceEEEEEEeecC-----CCCceEEEEEecCCCeeEEEEEEc----ccccCceeEEEEEEecccccceeeeEeeeccCCCC Q FBpp0290327 87 EFAILITFRQSS-----LKGGYLFSVVNPLDTVVQLGVHLS----PVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDK 157 (1008) Q Consensus 87 eFSilaTlR~~~-----~~~g~LfsV~~~~~~~~qlgL~ls----~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~ 157 (1008) --.+.+.||.+. .+..|+++...+ .+++|++. ....+.. .|.+.... ...|.+++.++. T Consensus 94 ~~~~HfSv~~d~~~pln~shEyqi~F~ES----h~~elk~G~~~g~~~~~~~--~l~~~~~~------~~~wstp~~~~~ 161 (252) T 4le3_A 94 KVYYHFSLMRKDINAPATTREHQIAFFES----HFTELKSGWLSGAPGISDT--LLRWCVGG------QTQWSVEWAADV 161 (252) T ss_dssp EEEEEEEEECCSTTCCCTTSCEEEEEETT----CSEEEEESCCSSSCCGGGG--EEEEEETT------EEEEEEECCTTC T ss_pred eEEEEEEEEeCcCcCCCCCcceeEEeecc----cEEEEEeccccCCCCCCCC--eEEEecCC------ceEEEeeeccCc Confidence 345556666532 255787777773 47888876 1111122 34444331 246789999999 Q ss_pred eeEEEEEEe--CCeEEEEEc Q FBpp0290327 158 WNSIALQVL--SDKVSFYYD 175 (1008) Q Consensus 158 WHrlaLsV~--g~~VtLyVD 175 (1008) ||+||+.|. .+.|++|.- T Consensus 162 W~NFA~~iDf~~nt~~v~~S 181 (252) T 4le3_A 162 WHNVAYEIDFAAGTVGFWHS 181 (252) T ss_dssp CEEEEEEEETTTTEEEEEEE T ss_pred EEEEEEEeeecCCEEEEEEe Confidence 999999987 788998864No 63>2dpr_A Conantokin-T, CON-T; conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Conus tulipa} PDB: 1ont_A* Probab=57.18 E-value=5.5 Score=25.62 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=10.7 Q ss_pred hHHHHHHHHhhh Q FBpp0290327 996 ADEYAAHLENLL 1007 (1008) Q Consensus 996 ~~~~~~~~~~~~ 1007 (1008) |+||++.||+|. T Consensus 2 eeeyqemlenlr 13 (21) T 2dpr_A 2 EEEYQEMLENLR 13 (26) T ss_dssp CHHHHHHHHHHH T ss_pred cHHHHHHHHHHH Confidence 689999999985No 64>3zyp_A CIP1; metal binding protein, calcium-binding, CBM-containing, beta sandwich jelly roll, carbohydrate-binding; HET: NAG; 1.50A {Hypocrea jecorina} Probab=54.59 E-value=71 Score=33.88 Aligned_cols=118 Identities=7% Similarity=0.075 Sum_probs=67.9 Q ss_pred CCCCcceEecCCCccCCCccccc-CCcCC--ceEEEEEEeecCC---CCceEEEEEecCCCeeEEEEEEcccccCceeEE Q FBpp0290327 59 EDGFPAFRFLQTADVKSPYRMLL-PEKLY--EFAILITFRQSSL---KGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVS 132 (1008) Q Consensus 59 ~d~~pAyrf~~~a~l~~pt~~~f-P~~~~--eFSilaTlR~~~~---~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~ 132 (1008) |.+..+.||...+. ......+| ...+| +|.+=+.||..+. +...+|++.+..+... .|++.+... + T Consensus 36 hsG~~Slrv~~ga~-g~~~~~~~~~~a~psg~~y~R~~v~~~~~~~~~h~t~~~~~~~~~~~~--~lRiGgq~~----~- 107 (218) T 3zyp_A 36 HSGSNSMKVVGGPN-GYCGHIFFGTTQVPTGDVYVRAWIRLQTALGSNHVTFIIMPDTAQGGK--HLRIGGQSQ----V- 107 (218) T ss_dssp SSSSCEEEEECCSS-GGGGCEEEEECCCCSSSEEEEEEEEESSCCCSSCEEEEEEEBGGGTTC--EEEEEEETT----E- T ss_pred cCCceeEEEecCCC-CCccceeeeeccCCCCceEEEEEEEeccCCCCCcEEEEEeecCCCCCc--cEEEccccc----e- Confidence 55677777743321 11111111 12334 6777788887553 3347888887655433 456665521 2 Q ss_pred EEEEecc--cc---cceeeeEeeeccCCCCeeEEEEEEeC-CeEEEEEcCccceeeec Q FBpp0290327 133 LVYTQAD--QN---IGRKLASFGVAHVPDKWNSIALQVLS-DKVSFYYDCELRNTTLV 184 (1008) Q Consensus 133 l~Y~~~~--~~---~~q~~~sF~v~l~dg~WHrlaLsV~g-~~VtLyVDC~~~~t~~l 184 (1008) |.|.... .. ++..-+.-.+.+..++||-|.+.|.. ..+.+|||-+++..+.+ T Consensus 108 l~~n~~sddat~p~~sp~G~a~s~~l~~~~W~C~E~~v~~~g~~~~WldG~~v~~lt~ 165 (218) T 3zyp_A 108 LDYNRESDDATLPDLSPNGIASTVTLPTGAFQCFEYHLGTDGTIETWLNGSLIPGMTV 165 (218) T ss_dssp EEEEETTTCCEESCSSHHHHHHSCCCCCSSCEEEEEEECSSSCEEEEETTEECGGGCB T ss_pred eeeeeccCcccccccCCCcccccccccCCcEEEEEEEECCCCeEEEEECCEEeeeEEe Confidence 4444332 11 11111111467889999999999965 47999999999877544No 65>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} Probab=50.40 E-value=22 Score=36.94 Aligned_cols=103 Identities=13% Similarity=0.239 Sum_probs=54.1 Q ss_pred cccCCcCC-ceEEEEEEeec-CCCCceEEEEEecCCC-eeEEEEEEcccccCce-eEEEEEEecccccceeee-Eeeecc Q FBpp0290327 79 MLLPEKLY-EFAILITFRQS-SLKGGYLFSVVNPLDT-VVQLGVHLSPVVKNSY-NVSLVYTQADQNIGRKLA-SFGVAH 153 (1008) Q Consensus 79 ~~fP~~~~-eFSilaTlR~~-~~~~g~LfsV~~~~~~-~~qlgL~ls~~~~~~~-~i~l~Y~~~~~~~~q~~~-sF~v~l 153 (1008) .|+-..-+ +|.|.+-+|.. ..++|++|.+....+. ..-+++++........ .+. .+...+..-....+ .-.... T Consensus 39 ~l~t~~~y~df~L~~e~k~~~~~NSGi~~r~~~~~~~~~~G~E~Qi~d~~~~~~~~~~-~~~~~G~ly~~~~~~~~~~~k 117 (201) T 3imm_A 39 SIWTKDEYENFELDLDFKTDVGTNSGVVVYCTDTKDWIPNSVEIQIADDHCEKWGNGK-PYEKCGAIYGHLGAVQDKVVK 117 (201) T ss_dssp CEEESSCBCSEEEEEEEEECTTCEEEEEEEESCSSSCTTSSEEEEEECTTCCTTTTCC-GGGSTTSBTTTBCCSSSCCSC T ss_pred cEEECCcccCEEEEEEEEeCCCCCCEEEEEeccCCCCcCceEEEEEECCCCCcccccC-CccccceeecccCcccccccC Confidence 34433334 99999999985 4677888877653110 0012334322110000 000 00000100000000 001122 Q ss_pred CCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290327 154 VPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 154 ~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1008) ..++|+++.|.|.+++|++|||-.++... T Consensus 118 p~geWn~~~I~~~g~~i~v~lNG~~v~~~ 146 (201) T 3imm_A 118 KPGEWNHMRIKCAGQHIMVILNGKKVTEM 146 (201) T ss_dssp CTTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred CCCccEEEEEEEECCEEEEEECCEEEEEE Confidence 36899999999999999999999998764No 66>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 Probab=47.15 E-value=4.9 Score=40.06 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.5 Q ss_pred ccccccCCceEEE Q FBpp0290327 952 KRQSCDSKLIILC 964 (1008) Q Consensus 952 ~~~~C~~~~~~lC 964 (1008) ...+|+.++..+| T Consensus 152 ~d~~C~~~~~~IC 164 (168) T 1buu_A 152 NDISCQASHTAVC 164 (168) T ss_dssp EEECTTSCEEEEE T ss_pred ECcCCCCCeeEEE Confidence 3468999999998No 67>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases, structural genomics, center for structural genomics, JCSG; 1.85A {Parabacteroides distasonis} Probab=44.81 E-value=29 Score=36.49 Aligned_cols=103 Identities=12% Similarity=0.230 Sum_probs=54.3 Q ss_pred cccCCcCC-ceEEEEEEeec-CCCCceEEEEEecCCC-eeEEEEEEcccccCcee-EEEEEEecccccceeee-Eeeecc Q FBpp0290327 79 MLLPEKLY-EFAILITFRQS-SLKGGYLFSVVNPLDT-VVQLGVHLSPVVKNSYN-VSLVYTQADQNIGRKLA-SFGVAH 153 (1008) Q Consensus 79 ~~fP~~~~-eFSilaTlR~~-~~~~g~LfsV~~~~~~-~~qlgL~ls~~~~~~~~-i~l~Y~~~~~~~~q~~~-sF~v~l 153 (1008) .|+-..-+ +|.|.+-+|.. ..++|++|.+....+. ..-+++++......... +. .....+..-....+ +-.... T Consensus 52 ~L~t~~~f~dF~L~~e~k~~~~~NSGI~~r~~~~~~~~~~G~E~QIld~~~~~~~~~~-~~~~~GslY~~~~~~~~~~~k 130 (214) T 3s5q_A 52 SIWTKVQYENFILDLEFKTDVNTNSGVVIYCTDKGNWIPSSIEIQIADDHHPEWQSYP-EYWRCGSIYGHKGANEQLVVK 130 (214) T ss_dssp CEEESSCBCSEEEEEEEEECTTCEEEEEEEESCSTTCGGGSEEEEEECTTSGGGGGSC-GGGSTTSBTTTBCCSSSCCSC T ss_pred cEEECCeeccEEEEEEEEECCCCccEEEEEecCCCCCcceEEEEEEECCCCCcccccC-CCCceeeeccccCcccccccC Confidence 34444435 99999999985 4677888877653210 01123333221000000 00 00000100000000 001112 Q ss_pred CCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290327 154 VPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 154 ~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1008) ..++|+++.|.|.+++|++|||-.++... T Consensus 131 p~geWn~~~I~~~g~~i~v~lNG~~v~~~ 159 (214) T 3s5q_A 131 KPGEWNRMIITAKGQQIDIELNGKHIVSA 159 (214) T ss_dssp CTTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEE Confidence 36899999999999999999999988664No 68>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomic center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503} Probab=36.47 E-value=29 Score=37.15 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=54.4 Q ss_pred ccCCcCC-ceEEEEEEeec-CCCCceEEEEEecCCCe---eEEEEEEcccccC-ceeEEE-EEEecccccceeeeEeeec Q FBpp0290327 80 LLPEKLY-EFAILITFRQS-SLKGGYLFSVVNPLDTV---VQLGVHLSPVVKN-SYNVSL-VYTQADQNIGRKLASFGVA 152 (1008) Q Consensus 80 ~fP~~~~-eFSilaTlR~~-~~~~g~LfsV~~~~~~~---~qlgL~ls~~~~~-~~~i~l-~Y~~~~~~~~q~~~sF~v~ 152 (1008) |+-..-+ +|.|.+-+|.. ..|+|++|.+....... .-+++++...... ...+-. -....+..-....+.-... T Consensus 70 L~t~~~y~dF~L~~E~k~~~~~NSGI~~r~~~~~g~~~~~~g~E~QIlD~~~~~~~~~g~~~~~~~GslY~~~~~~~~~~ 149 (241) T 3h3l_A 70 LIYDKKFKNFVFEIEWKIDKAGNSGIFYTAQEIEGTPIYYSSPEYQLLDNENMPDAWEGCDGNRQAGAVYDMIMPDPQPV 149 (241) T ss_dssp EEESSCBSSEEEEEEEEECBTCEEEEEEEECCCTTSCGGGSSCEEEEECTTTCGGGSSSSTTTTSTTSBTTTBCCSSCCC T ss_pred EeEcCccccEEEEEEEEeCCCCCcEEEEEecCCCCCccccceEEEEEeCCCCCCccccccCCCCcccccccccCcccccc Confidence 3333334 99999999985 56778888776432110 1123444211000 000000 0000000000000111122 Q ss_pred cCCCCeeEEEEEEeCCeEEEEEcCccceeee Q FBpp0290327 153 HVPDKWNSIALQVLSDKVSFYYDCELRNTTL 183 (1008) Q Consensus 153 l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~ 183 (1008) ...++|+++-|.|.+++|+++||-.++.... T Consensus 150 ~p~geWN~~~I~~~g~~i~v~lNG~~V~~~~ 180 (241) T 3h3l_A 150 KPYGNWNKTRIVVYNQRVIHYMNDVKILEFQ 180 (241) T ss_dssp CCTTSCEEEEEEEETTEEEEEETTEEEEEEE T ss_pred CCCCceEEEEEEEECCEEEEEECCEEEEEEe Confidence 3368999999999999999999999887643No 69>3u1x_A Putative glycosyl hydrolase; glycosyl hydrolysis, carbohydrate metabolism,, structural GE joint center for structural genomics, JCSG; HET: MSE PGE; 1.70A {Parabacteroides distasonis} Probab=35.91 E-value=72 Score=33.84 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=26.7 Q ss_pred CCCCeeEEEEEEeCCeEEEEEcCccceeee Q FBpp0290327 154 VPDKWNSIALQVLSDKVSFYYDCELRNTTL 183 (1008) Q Consensus 154 ~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~ 183 (1008) ..++|+++.|.|.+++|+++||-.++.... T Consensus 158 ~~geWn~~~I~~~g~~i~v~lNG~~v~~~~ 187 (236) T 3u1x_A 158 PPGEWNSSMVLYKDGYVEHWLNGEKLFSFQ 187 (236) T ss_dssp CTTSCEEEEEEEETTEEEEEETTEEEEEEE T ss_pred CCCcceEEEEEEECCEEEEEECCEEEEEEe Confidence 468999999999999999999999887643No 70>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of U function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503} Probab=33.77 E-value=1.3e+02 Score=32.24 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=54.4 Q ss_pred cccCCcCC-ceEEEEEEeec-CCCCceEEEEEecCCC---eeEEEEEEcccccCceeEEEEEE------ecccccceeee Q FBpp0290327 79 MLLPEKLY-EFAILITFRQS-SLKGGYLFSVVNPLDT---VVQLGVHLSPVVKNSYNVSLVYT------QADQNIGRKLA 147 (1008) Q Consensus 79 ~~fP~~~~-eFSilaTlR~~-~~~~g~LfsV~~~~~~---~~qlgL~ls~~~~~~~~i~l~Y~------~~~~~~~q~~~ 147 (1008) .|+...-+ +|.|.+-+|.. ..|+|++|.+...... ..-+++++....... .. ..+. ..+..-....+ T Consensus 77 ~l~t~~~y~dF~L~~E~k~~~~~NSGI~~r~~~~~~~~~~~~g~E~QIld~~~~~-~~-~~g~~~~~~~~~G~ly~~~~~ 154 (245) T 3hbk_A 77 DIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHP-DA-KLYTTFPGSRTLGSLYDLKKS 154 (245) T ss_dssp CEEESSCBSSEEEEEEEEECTTCEEEEEEEECCCSCSSSCCCCEEEEEECTTTCT-TT-TCCSSSTTTTSTTSBTTTBCC T ss_pred eEEECCccccEEEEEEEEeCCCCCcEEEEEeccCCCCCCcceEEEEEEECCCCCC-cc-ccccccCCCccEeeccccccc Confidence 34444435 99999999985 5677888876543110 112334442210000 00 0000 00000000000 Q ss_pred EeeeccCCCCeeEEEEEE-eCCeEEEEEcCccceeee Q FBpp0290327 148 SFGVAHVPDKWNSIALQV-LSDKVSFYYDCELRNTTL 183 (1008) Q Consensus 148 sF~v~l~dg~WHrlaLsV-~g~~VtLyVDC~~~~t~~ 183 (1008) .-......++|+++-|.| .+++|++|||-.++.... T Consensus 155 ~~~~~~p~geWN~~~I~~~~g~~i~v~lNG~~V~~~~ 191 (245) T 3hbk_A 155 ENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYE 191 (245) T ss_dssp CSCCCCCTTSEEEEEEEECTTCEEEEEETTEEEEEEE T ss_pred ccccCCCCCccEEEEEEEEcCCEEEEEECCEEEEEee Confidence 101122368999999999 899999999999887643No 71>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} SCOP: b.29.1.0 PDB: 2dyc_A Probab=33.73 E-value=4.2e+02 Score=26.49 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=62.2 Q ss_pred CCCcceEecCCCc----cCCCcccccCCcCC-ceEEEEEEeecCCCCceEEEEEecCCCeeEEEEEEcccccCceeEEEE Q FBpp0290327 60 DGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLV 134 (1008) Q Consensus 60 d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~ 134 (1008) ..+|||....... ...|....+|.+|. .=+|+++=+.......+-+.+.........+.|.++.+-+....|..- T Consensus 10 ~~~~~~~~~~~~~~~~~p~vPf~~~ip~gL~~G~~I~I~G~v~~~a~rF~Inl~~g~~~~~dIalHfnpRf~~~~~IV~N 89 (164) T 3i8t_A 10 HTDPAYVPAPGYQPTYNPTLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGWDKVVFN 89 (164) T ss_dssp ---------------CCCCSSEEEECTTCCCTTCEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEECSSSCEEEEE T ss_pred cCCcccccCCCCCcccCCCCCEEeecCCCCcCCCEEEEEEEECCCCCEEEEEeccCCCCCCCEEEEEeeeeCCCCEEEEE Confidence 3478887765543 46778888898886 555555555544444465556543211234556665553221223322 Q ss_pred EEecccccceeeeEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290327 135 YTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 135 Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1008) ....+ ...++-.....+...|+=-.|.|.+..+...++||-....+. T Consensus 90 S~~~g-~WG~EEr~~~~PF~~G~~F~l~I~~~~~~f~V~VNg~~~~~F 136 (164) T 3i8t_A 90 TMQSG-QWGKEEKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEY 136 (164) T ss_dssp EEETT-EECCCEEESCCCCCTTCEEEEEEEECSSEEEEEETTEEEEEE T ss_pred cccCC-EeCCCcccCCCCCccCCEEEEEEEEccCEEEEEECCEEEEEE Confidence 22222 111111111356668888899999999999999998776553No 72>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat, structural protein; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1 Probab=30.53 E-value=13 Score=38.07 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=24.9 Q ss_pred CcEEecCccccccCCCCcccCCCc-eeecCCCccCCCCCCCCceEEecCCCCcccccccccc Q FBpp0290327 867 GDVLFNSWKGIFNGQGGFFSQAPR-IYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTYCD 927 (1008) Q Consensus 867 g~vl~~~~~~l~~~~~~~~~~~~~-i~~f~~~~~l~~~~~~~k~vw~Gs~~~g~~~~~~~C~ 927 (1008) +.|+.+.-...-. .-++|+...+ +|.|+=+-.. ..+.+|..+..++......+|+ T Consensus 70 d~v~~N~G~~yn~-~TG~FTapv~G~Y~Fs~~~~~-----~~~~~~v~L~~Ng~~~~~~~~~ 125 (178) T 1o91_A 70 DKLLYNGRQNYNP-QTGIFTCEVPGVYYFAYHVHC-----KGGNVWVALFKNNEPMMYTYDE 125 (178) T ss_dssp CEEEEEETTCEET-TTTEEECCSCEEEEEEEEEEE-----EEEEEEEEEEETTEEEEEEEEC T ss_pred CEEEEcCCCCccC-CCCeEEeeCCeEEEEEEEEEe-----CCceEEEEEEECCEEEEEEEec Confidence 4455543333332 3335555555 6655322111 1245565665566554444443No 73>4jqt_A Putative glycosyl hydrolase; PF06439 family protein, DUF1080, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.49A {Bacteroides thetaiotaomicron} Probab=27.96 E-value=1.6e+02 Score=34.13 Aligned_cols=101 Identities=16% Similarity=0.288 Sum_probs=55.6 Q ss_pred cccCCcCC-ceEEEEEEeecC-CCCceEEEEEecCC----CeeEEEEEEcccccCceeEEEEEEecccccce--e-eeEe Q FBpp0290327 79 MLLPEKLY-EFAILITFRQSS-LKGGYLFSVVNPLD----TVVQLGVHLSPVVKNSYNVSLVYTQADQNIGR--K-LASF 149 (1008) Q Consensus 79 ~~fP~~~~-eFSilaTlR~~~-~~~g~LfsV~~~~~----~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q--~-~~sF 149 (1008) .++.+.-+ +|.|.+-+|... .++|++|.+..... ...-+.+++....+. .. --+|......... . .... T Consensus 44 ~l~t~~~y~dF~L~~e~k~~~~~NSGI~~r~~~~~~~~~~~~~gyqvqi~~~~~~-~~-g~ly~~~~~g~l~~~~~~p~~ 121 (431) T 4jqt_A 44 FLATTKNYGDFILEFDFKIDDGLNSGVQLRSESKKDYQNGRVHGYQFEIDPSKRA-WS-GGIYDEARRNWLYPLTLNPAA 121 (431) T ss_dssp EEEESSCBSSEEEEEEEEECTTCCEEEEEEEBCCTTTGGGCCBEEEEEECCSTTC-CT-TCEEEETTTEEEECGGGSGGG T ss_pred eEEeCCccccEEEEEEEEeCCCCceEEEEEecCcccccCCceeEEEEEEcCCCCC-Cc-CcccCcCccceecccccCchh Confidence 44444445 999999999864 67888887764211 011234444332110 00 0123211100000 0 0000 Q ss_pred eeccCCCCeeEEEEEEeCCeEEEEEcCcccee Q FBpp0290327 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNT 181 (1008) Q Consensus 150 ~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t 181 (1008) ...+-.++|+++.|.|.+++|++|||-.++.. T Consensus 122 ~~~~~~geWn~~~I~~~g~~i~v~lNG~~v~~ 153 (431) T 4jqt_A 122 KTAFKNNAWNKARIEAIGNSIRTWINGVPCAN 153 (431) T ss_dssp GGCCCTTSCEEEEEEEETTEEEEEETTEEEEE T ss_pred hcccCCCCcEEEEEEEECCEEEEEECCEEEEE Confidence 11233789999999999999999999988755No 74>3wvj_A Beta-glucanase; thermostability, industrial enzyme, pastoris, A classic beta-jellyroll fold, hydrolase; HET: B3P; 1.95A {Clostridium thermocellum} Probab=25.80 E-value=6.3e+02 Score=26.01 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=25.6 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290327 155 PDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 155 dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1008) ...||..+|....++|++|||-+++.+. T Consensus 143 ~~~fH~Y~~~W~~~~i~~yvDg~~~~~~ 170 (220) T 3wvj_A 143 SQDFHTYGFEWRPDYIDFYVDGKKVYRG 170 (220) T ss_dssp TTSCEEEEEEEETTEEEEEETTEEEEEE T ss_pred CCCcEEEEEEEECCEEEEEECCEEEEEE Confidence 5799999999999999999999988764No 75>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Probab=24.79 E-value=2e+02 Score=30.03 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=45.1 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--ccCCCceeeccCCceEEEEe-----ccc-ccCCceeeeeeeeEEecCcc Q FBpp0290327 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--VTREPIELVFDSASTLYIGQ-----AGS-IIGGKFEGYLEKINVYGNPD 226 (1008) Q Consensus 155 dg~WHrlaLsV~g~~VtLyVDC~~~~t~~--l~r~~~~l~~~~~~~l~IGq-----~g~-~~~~~F~G~LQ~l~i~~dp~ 226 (1008) ...||..+|.-..+.|++|||-+++.+.. ++..+..|.+ .|+++. .+. ....-++-.|.-++++.... T Consensus 15 ~~~fH~Y~~eW~~~~i~~~vDg~~~~~~~~~~P~~p~~lil----nl~~g~g~~~W~g~~~~~~p~~m~vDyVrvy~~~~ 90 (214) T 1ajo_A 15 SKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMM----NLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNQT 90 (214) T ss_dssp GGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEE----EEEEBSSCHHHHCCCCCCCCEEEEEEEEEEEESST T ss_pred cCCcEEEEEEEeCCeEEEEECCEEEEEEcCCCCCCCcEEEE----EEEecCCccccCCCCCcCCCceEEEEEEEEeeccc Confidence 56899999999999999999999887753 3323333322 455552 011 01122345566677777654 Q ss_pred cccccC Q FBpp0290327 227 AINVTC 232 (1008) Q Consensus 227 ~a~~~C 232 (1008) +....| T Consensus 91 ~~~~~d 96 (214) T 1ajo_A 91 GGSFFE 96 (214) T ss_dssp TCCEEE T ss_pred cceeec Confidence 443334No 76>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 Probab=23.56 E-value=20 Score=35.47 Aligned_cols=6 Identities=17% Similarity=0.373 Sum_probs=3.0 Q ss_pred chhhhH Q FBpp0290327 821 ADFACY 826 (1008) Q Consensus 821 aD~~C~ 826 (1008) |..+|+ T Consensus 71 A~~~C~ 76 (168) T 1buu_A 71 VKALCS 76 (168) T ss_dssp HHHHHH T ss_pred HHHHHH Confidence 445554No 77>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Probab=23.23 E-value=1e+03 Score=27.41 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=44.3 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--ccCCCceeeccCCceEEEEec-----c-cccCCceeeeeeeeEEecCcc Q FBpp0290327 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--VTREPIELVFDSASTLYIGQA-----G-SIIGGKFEGYLEKINVYGNPD 226 (1008) Q Consensus 155 dg~WHrlaLsV~g~~VtLyVDC~~~~t~~--l~r~~~~l~~~~~~~l~IGq~-----g-~~~~~~F~G~LQ~l~i~~dp~ 226 (1008) ...||..+|....+.|++|||-+++.+.. ++..+..|.| .|+++.. + ......+.-.|.-|||+.... T Consensus 83 ~~~FHtY~veWtp~~I~wyVDG~~v~t~~~~~P~~P~~liL----NlwvGgg~g~W~G~p~~~~P~~m~VDyVRVYq~~~ 158 (394) T 1axk_A 83 SKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMM----NLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNAS 158 (394) T ss_dssp GGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEE----EEEEBSSCHHHHCCCCCCCCEEEEEEEEEEEECCC T ss_pred CCCeEEEEEEEECCEEEEEECCEEEEEECCCCCCCCeEEEE----EEEccCCccccCCCCCCCCCeEEEEEEEEeeccCC Confidence 46899999999999999999999877643 3333333333 3555520 1 111223567788888887653No 78>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Probab=22.74 E-value=7.2e+02 Score=26.08 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=28.8 Q ss_pred eeeccCCCCeeEEEEEEeCCeEEEEEcCccceeee Q FBpp0290327 149 FGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTL 183 (1008) Q Consensus 149 F~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~ 183 (1008) +........||..+|....+.|++|||-+++.+.. T Consensus 158 ~~~~~~~~~fH~Y~~eW~~~~I~~~vDg~~~~~~~ 192 (251) T 3iln_A 158 IRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFP 192 (251) T ss_dssp EECTTTTTSCEEEEEEECSSEEEEEETTEEEEEEE T ss_pred EeCCCCCCCCEEEEEEEECCEEEEEECCEEEEEEC Confidence 34455577999999999999999999998876643No 79>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} SCOP: b.29.1.2 Probab=21.97 E-value=7.8e+02 Score=25.71 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=26.0 Q ss_pred CCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290327 154 VPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 154 ~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1008) ....||..+|....+.|++|||-+++.+. T Consensus 160 ~~~~fH~Y~ieW~~~~I~~yvDg~~~~~~ 188 (234) T 3i4i_A 160 ASEDFHIYAFNWQPNYIAWLVDGEEVYRA 188 (234) T ss_dssp TTTSCEEEEEEEETTEEEEEETTEEEEEE T ss_pred CCCCcEEEEEEEECCEEEEEECCEEEEEE Confidence 36799999999999999999999988764No 80>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Probab=21.81 E-value=8.9e+02 Score=26.27 Aligned_cols=28 Identities=7% Similarity=-0.056 Sum_probs=25.4 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290327 155 PDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1008) Q Consensus 155 dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1008) ...||..+|....+.|++|||-+++.+. T Consensus 130 ~~~fHtY~ieWtp~~I~~yVDG~~v~~~ 157 (278) T 1umz_A 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVF 157 (278) T ss_dssp TTSCEEEEEEECSSEEEEEETTEEEEEE T ss_pred CCCCEEEEEEEeCCeEEEEECCEEEEEE Confidence 5799999999999999999999887664No 81>4qhz_A Putative glycosyl hydrolase; PF06439 family protein, DUF1080, structural genomics, joint for structural genomics, JCSG; HET: MLY; 2.13A {Parabacteroides distasonis} Probab=21.04 E-value=80 Score=34.01 Aligned_cols=91 Identities=11% Similarity=0.232 Sum_probs=51.2 Q ss_pred ccccCCcCC-ceEEEEEEeecC---------CCCceEEEEEecCCCeeEEEEEEcccccCceeEEEEEEe--ccccccee Q FBpp0290327 78 RMLLPEKLY-EFAILITFRQSS---------LKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQ--ADQNIGRK 145 (1008) Q Consensus 78 ~~~fP~~~~-eFSilaTlR~~~---------~~~g~LfsV~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~--~~~~~~q~ 145 (1008) ..|+...-+ +|.|.+-+|... .|+|++|.. ++++++.....+. .|.. .+..-... T Consensus 86 G~L~T~~~f~dF~L~lE~k~~~~~~~~~~~~gNSGI~~r~--------~~EvQIld~~~~~-----~~~~~~~GslY~~~ 152 (246) T 4qhz_A 86 GDIQTXQXFNDFQMHIEWQVPTNITGESQSRGNSGIFLQG--------MYEVQVLDCYNNP-----TYVNGQTGSIYKQS 152 (246) T ss_dssp CCEEESSCBSSEEEEEEEECCTTCCCCGGGSSCEEEEETT--------TEEEEECCCTTCC-----CCGGGSTTCBTTTB T ss_pred ccEEeccccCcEEEEEEEEeCCcccccccCCCccEEEeCc--------eEEEEEeCCCCCC-----CCCCCceeEECccc Confidence 334444435 999999999864 667776631 1455553321100 0110 01000001 Q ss_pred eeEeeeccCCCCeeEEEEEEe------------CCeEEEEEcCcccee Q FBpp0290327 146 LASFGVAHVPDKWNSIALQVL------------SDKVSFYYDCELRNT 181 (1008) Q Consensus 146 ~~sF~v~l~dg~WHrlaLsV~------------g~~VtLyVDC~~~~t 181 (1008) .+......-.++|+++-|.|. +.+|++++|-.++.. T Consensus 153 ~p~~~~~~p~GeWNt~~I~~~a~~f~~~G~~~~g~~itv~lNG~~V~~ 200 (246) T 4qhz_A 153 IPLANAMRXPGEWNVYDIIYTAPTFKEDGSYRTHPTVTVIQNGVVLQN 200 (246) T ss_dssp CCSCBCCCCTTSEEEEEEEEECCEECTTSSEEECCEEEEEETTEEEEE T ss_pred CCccccccCcCcceEEEEEEEecccccccccccCCEEEEEECCEEEEE Confidence 111122334789999999996 689999999998866No 82>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Probab=21.02 E-value=2.5e+02 Score=30.03 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=26.4 Q ss_pred CCCCeeEEEEEEeCCeEEEEEcCccceeee Q FBpp0290327 154 VPDKWNSIALQVLSDKVSFYYDCELRNTTL 183 (1008) Q Consensus 154 ~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~ 183 (1008) ....||..+|....++|++|||-+++.+.. T Consensus 188 ~~~~fH~Y~veW~~~~I~~yvDG~~~~~~~ 217 (271) T 1dyp_A 188 PRNDFHTYGVNVTKDKITWYVDGEIVGEKD 217 (271) T ss_dssp TTSSCEEEEEEECSSEEEEEETTEEEEEEE T ss_pred CCCCeEEEEEEEECCEEEEEECCEEEeeec Confidence 357999999999999999999999887653