Query FBpp0290330 type=protein; loc=3L:join(7012190..7012289,7012739..7013277,7033869..7033964,7034503..7034538,7034635..7034703,7034972..7035038,7035170..7035315,7035744..7035881,7038005..7038151,7040546..7040575,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7050173..7050187,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0290330; name=Mp-PG; parent=FBgn0260660,FBtr0301108; dbxref=REFSEQ:NP_001163358,GB_protein:ACZ94629,FlyBase:FBpp0290330,FlyBase_Annotation_IDs:CG42543-PG,FlyMine:FBpp0290330,modMine:FBpp0290330; MD5=294526d739f967e5e356c555f2c58f2b; length=1023; release=r6.06; species=Dmel; Match_columns 1023 No_of_seqs 749 out of 2851 Neff 6.3 Searched_HMMs 35384 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1dy2_A Collagen alpha1(XV) cha 100.0 2E-60 5.6E-65 475.6 12.9 170 813-986 6-176 (180) 2 1koe_A Endostatin; angiogenesi 100.0 3.9E-60 1.1E-64 478.4 11.2 169 815-983 2-171 (172) 3 2uur_A Collagen alpha-1(IX) ch 100.0 9.6E-34 2.7E-38 306.8 18.9 197 29-238 30-235 (245) 4 2erf_A Thrombospondin-1; TSP-1 100.0 6E-32 1.7E-36 286.1 16.3 193 34-234 2-209 (209) 5 3hqv_A Collagen alpha-1(I) cha 100.0 3.7E-29 1E-33 314.8 40.4 32 663-694 997-1028(1056) 6 3hqv_B Collagen alpha-2(I) cha 100.0 5.4E-29 1.5E-33 312.7 39.1 29 666-694 995-1023(1028) 7 1za4_A Thrombospondin 1; TSP-1 100.0 2.1E-30 5.8E-35 281.7 16.8 197 34-237 12-222 (251) 8 3hsh_A Endostatin, collagen al 99.6 1.2E-15 3.3E-20 126.1 4.2 52 727-778 4-55 (56) 9 3n3f_A Collagen alpha-1(XV) ch 99.6 1.8E-15 5.2E-20 124.1 5.2 52 727-778 2-53 (54) 10 3v64_A Low-density lipoprotein 98.9 2.6E-08 7.4E-13 102.7 17.4 152 63-225 3-172 (191) 11 3sh4_A LG3 peptide; actin disa 98.9 1.6E-08 4.6E-13 104.6 15.6 151 62-224 5-168 (195) 12 4pbp_A C-reactive protein; acu 98.9 3E-08 8.4E-13 103.5 14.9 158 54-228 2-172 (210) 13 1pz7_A Agrin; structural prote 98.8 6.2E-08 1.8E-12 101.3 16.5 126 87-223 49-183 (204) 14 3pve_A Agrin, AGRN protein; mR 98.8 7.2E-08 2E-12 99.4 16.7 150 64-224 11-170 (189) 15 3flp_A SAP-like pentraxin; phy 98.8 1.7E-07 4.7E-12 98.2 18.0 158 62-228 6-175 (217) 16 2h0b_A Neurexin-1-alpha; B-san 98.7 2.4E-07 6.9E-12 95.0 16.4 127 87-225 29-163 (184) 17 4avs_A Serum amyloid P-compone 98.7 2.4E-07 6.9E-12 96.2 15.9 150 62-228 6-166 (204) 18 2r16_A Neurexin-1-alpha; beta- 98.7 3E-07 8.6E-12 94.3 16.3 147 62-225 5-158 (182) 19 3pvn_A C-reactive protein; pen 98.7 3.3E-07 9.5E-12 95.2 15.7 150 62-228 6-168 (206) 20 3bod_A Neurexin-1-alpha; neure 98.6 8.7E-07 2.5E-11 90.9 15.5 125 87-224 30-156 (178) 21 2v73_A CBM40, putative EXO-alp 98.5 3.7E-06 1E-10 87.6 17.5 136 86-228 40-180 (191) 22 4c1w_A Neuraminidase; sugar bi 98.5 1.4E-06 4.1E-11 89.5 14.2 137 86-228 33-181 (188) 23 3asi_A Neurexin-1-alpha; beta- 98.4 3.7E-06 1E-10 97.4 15.5 127 87-225 250-377 (410) 24 1d2s_A SHBG, sex hormone-bindi 98.3 6.9E-06 1.9E-10 83.5 14.8 123 87-225 27-157 (170) 25 1f5f_A SHBG, sex hormone-bindi 98.3 1.6E-05 4.4E-10 83.5 15.5 128 87-225 39-175 (205) 26 2jd4_A Laminin subunit alpha-1 98.2 1.5E-05 4.2E-10 91.3 15.8 126 87-225 221-357 (383) 27 2r1d_A Neurexin-1-beta, neurex 98.2 1.7E-05 4.8E-10 84.8 15.2 125 87-224 64-190 (226) 28 4qvs_A S-layer domain-containi 98.2 2.1E-06 6.1E-11 90.0 7.7 164 53-228 38-213 (227) 29 1dyk_A Laminin alpha 2 chain; 98.1 2.7E-05 7.5E-10 89.5 15.4 126 87-225 233-369 (394) 30 2r1b_A Neurexin-1-beta, neurex 98.1 3.8E-05 1.1E-09 81.6 14.3 127 87-224 36-192 (220) 31 1h30_A GAS6, growth-arrest-spe 97.9 0.00025 7.1E-09 82.3 17.6 147 63-223 41-196 (422) 32 1a8d_A Tetanus neurotoxin; clo 97.9 0.00047 1.3E-08 80.9 19.5 165 51-228 47-235 (452) 33 4dqa_A Uncharacterized protein 97.8 0.00027 7.8E-09 80.4 15.9 150 62-228 140-295 (355) 34 2jd4_A Laminin subunit alpha-1 97.8 0.00041 1.2E-08 79.3 17.0 126 87-224 44-177 (383) 35 2jkb_A Sialidase B; intramolec 97.7 0.00036 1E-08 86.4 15.7 163 62-232 34-210 (686) 36 2vu9_A Botulinum neurotoxin A 97.6 0.0016 4.5E-08 74.4 17.9 168 50-231 48-231 (444) 37 1dyk_A Laminin alpha 2 chain; 97.6 0.00068 1.9E-08 77.9 15.5 126 87-225 58-191 (394) 38 2wjs_A Laminin subunit alpha-2 97.5 0.00078 2.2E-08 82.1 14.5 124 87-223 408-540 (608) 39 3vuo_A NTNHA; protection of bo 97.5 0.0018 5E-08 81.5 17.3 155 51-228 864-1025(1196) 40 3pme_A Type C neurotoxin; stru 97.4 0.0022 6.2E-08 73.1 15.8 167 51-231 31-210 (420) 41 3asi_A Neurexin-1-alpha; beta- 97.4 0.0016 4.4E-08 75.4 14.9 123 87-224 27-162 (410) 42 3v0a_B NTNH; botulinum neuroto 97.4 0.0024 6.7E-08 80.2 16.6 155 51-228 867-1028(1196) 43 1h30_A GAS6, growth-arrest-spe 97.4 0.00088 2.5E-08 77.8 12.1 128 87-222 250-393 (422) 44 3n7l_A Neurotoxin; HCR/D-SA, g 97.3 0.0014 3.9E-08 76.2 13.1 165 51-230 32-219 (424) 45 3rsj_A BONT/F; clostridium bot 97.3 0.018 5E-07 65.3 20.6 164 50-230 29-211 (413) 46 2nyy_A Botulinum neurotoxin ty 97.2 0.011 3E-07 74.3 18.9 167 50-230 900-1082(1295) 47 2wjs_A Laminin subunit alpha-2 97.1 0.0059 1.7E-07 74.4 16.2 126 87-222 226-363 (608) 48 1epw_A Bontoxilysin B, botulin 97.1 0.014 4E-07 74.2 18.8 153 61-228 894-1067(1290) 49 2vxr_A Botulinum neurotoxin ty 97.0 0.014 4.1E-07 66.5 16.2 165 50-231 76-262 (482) 50 3qcw_A Neurexin-1-alpha; synap 96.9 0.0084 2.4E-07 79.2 15.7 123 89-223 1084-1207(1245) 51 2sli_A Intramolecular trans-si 96.7 0.027 7.6E-07 69.8 16.7 136 85-228 34-184 (679) 52 3qcw_A Neurexin-1-alpha; synap 96.4 0.022 6.3E-07 75.2 14.3 122 87-223 859-993 (1245) 53 3ffz_A Botulinum neurotoxin ty 95.8 0.29 8.2E-06 61.8 18.9 163 51-230 876-1058(1252) 54 4b1m_A Levanase; hydrolase, CB 93.8 0.34 9.6E-06 49.7 10.6 90 87-183 65-158 (185) 55 1ms9_A Trans-sialidase; trans- 91.0 3.5 9.8E-05 50.8 16.0 69 155-227 555-627 (648) 56 4ccd_A Galactocerebrosidase; h 89.9 2.7 7.6E-05 51.8 13.8 89 87-182 528-622 (654) 57 1ei8_A Collagen-like peptide ( 88.5 0.73 2.1E-05 33.3 4.4 9 326-334 17-25 (29) 58 1pwb_A SP-D, PSP-D, pulmonary 83.4 0.27 7.6E-06 49.2 0.0 13 967-979 163-175 (177) 59 1pwb_A SP-D, PSP-D, pulmonary 79.0 0.48 1.4E-05 47.4 0.0 7 924-930 112-118 (177) 60 2zzj_A Glucuronan lyase A; bet 76.0 55 0.0016 35.0 15.0 178 50-236 21-234 (238) 61 3w9a_A CCGH131A, putative unch 64.8 32 0.00089 37.2 9.8 76 87-175 93-175 (245) 62 4le3_A Beta-glucanase; GH131, 59.0 35 0.001 37.0 9.0 76 88-175 95-181 (252) 63 3zyp_A CIP1; metal binding pro 58.7 64 0.0018 34.3 10.7 117 59-183 36-164 (218) 64 2dpr_A Conantokin-T, CON-T; co 56.0 6 0.00017 25.5 1.4 12 1011-1022 2-13 (21) 65 1buu_A Protein (mannose-bindin 44.7 5.6 0.00016 39.7 0.0 13 967-979 152-164 (168) 66 1dyp_A Kappa-carrageenase; hyd 35.5 1.1E+02 0.0031 32.9 8.5 29 155-183 189-217 (271) 67 1ajo_A CPA16M-127, circularly 29.8 1.7E+02 0.0048 30.7 8.4 76 155-234 15-98 (214) 68 3i8t_A Galectin-4; S-type lect 26.7 5.6E+02 0.016 25.7 12.8 122 60-182 10-136 (164) 69 1buu_A Protein (mannose-bindin 25.8 17 0.00049 36.0 0.0 8 835-842 70-77 (168) 70 4jqt_A Putative glycosyl hydro 25.7 1.5E+02 0.0044 34.3 7.9 99 79-182 44-154 (431) 71 3wvj_A Beta-glucanase; thermos 25.7 6.4E+02 0.018 26.0 16.0 65 155-223 143-215 (220) 72 3imm_A Putative secreted glyco 25.4 75 0.0021 32.9 4.7 95 87-182 48-146 (201) 73 4qhz_A Putative glycosyl hydro 23.1 64 0.0018 34.9 3.7 29 154-182 161-201 (246) 74 1axk_A Gluxyn-1; bifunctional, 22.8 1E+03 0.029 27.4 15.3 68 155-226 83-158 (394) 75 1ajk_A CPA16M-84, circularly p 22.7 3.7E+02 0.011 28.0 9.5 70 155-228 58-135 (214) 76 1umz_A Xyloglucan endotransgly 22.5 8.7E+02 0.025 26.4 17.5 67 155-225 130-214 (278) 77 2cws_A Alginate lyase A1-II'; 21.7 8.4E+02 0.024 26.0 12.7 87 87-179 88-182 (237) 78 4bpz_A Endo-1,3-beta-glucanase 20.3 3.4E+02 0.0095 29.0 8.8 32 151-182 179-210 (256) 79 3s5q_A Putative glycosylhydrol 20.2 1.1E+02 0.0031 32.1 4.7 102 80-182 53-159 (214)No 1>1dy2_A Collagen alpha1(XV) chain; angiogenesis inhibitor; 2.0A {Mus musculus} SCOP: d.169.1.5 Probab=100.00 E-value=2e-60 Score=475.59 Aligned_cols=170 Identities=52% Similarity=0.973 Sum_probs=163.6 Q ss_pred CCceeEEEecCCCCCCCCCCcccchHHHHHHhhhcCCccccceeeeccccccccccCCCCC-CCcccccCCcEEecCccc Q FBpp0290330 813 YPRMLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDTIVRPADR-DLPVVNTRGDVLFNSWKG 891 (1023) Q Consensus 813 ~~~~~~~~a~~~~~~g~~~Gi~GAD~~C~~~a~~~g~~~t~rA~Ls~~~~~~~~~v~~~dr-~~p~~n~~g~vl~~~~~~ 891 (1023) +.++|||||||+|++|||+ ||++||+||+++||.+|||||||+++||+++||+++|| .+||||+||+|||+||++ T Consensus 6 ~~~~L~lvALN~P~sG~m~----AD~~C~~qAraaGl~gTfRAfLSs~~qdl~~iV~~~DR~~~PivNlkGevLf~sw~~ 81 (180) T 1dy2_A 6 ERPVLHLVALNTPVAGDIR----ADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDS 81 (180) T ss_dssp -CCCEEEEECSSCBCSBCC----HHHHHHHHHHHTTCCSCEEESSCBTTBCGGGSSCGGGSSSCCEECTTSCEEESCSGG T ss_pred CCccEEEEEcCCCCCCCch----HHHHHHHHHHHhCCCCceEEEeecccccCccccCHhHcCCCCeEcCCCCEEecCHHH Confidence 3468999999999999999 99999999999999999999999999999999999999 799999999999999999 Q ss_pred cccCCCCcccCCCceEeeCCCcccCCCCCCcceEEecCCCCcccccCcccccccCCCCCceeecccCCcccccccccccc Q FBpp0290330 892 IFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLDGHKLLEQKRQSC 971 (1023) Q Consensus 892 l~~~~~~~~~~~~~i~~f~g~~~~~~~~~~~~~vw~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C 971 (1023) ||++++++|+.+++||+||+||||+|++||||.|||||++||++.+++||++|||++.+++|+||+|.+++||.|+.+|| T Consensus 82 lf~g~~~~l~~~~~Iysfdg~dVl~d~~wP~K~vWhGS~~~G~r~~d~~C~~W~s~~~~~~G~Assl~~g~ll~q~~~sC 161 (180) T 1dy2_A 82 IFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVVWHGSNPHGVRLVDKYCEAWRTTDMAVTGFASPLSTGKILDQKAYSC 161 (180) T ss_dssp GGSSSCCBCCTTSCCBBTTSCBTTTCTTCSSCEEECCBCTTSCBCTTSBHHHHBCCCTTCEEEEEEGGGTBSSCCEEEET T ss_pred HhCCCCCccCCCCCeeccCCcccccCCCccccccccCCCCCCCCcccccccCCccCCCCceEeeeecCCCCcccCcccCC Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCcEEEEEecccHH Q FBpp0290330 972 DSKLIILCVEALSQD 986 (1023) Q Consensus 972 ~~~~~~lCve~~~~~ 986 (1023) +++||||||||+... T Consensus 162 ~~~~ivLCIEn~~~~ 176 (180) T 1dy2_A 162 ANRLIVLCIENSFMT 176 (180) T ss_dssp TSCBBCEEEECCC-- T ss_pred CCceEEEEEEccccc Confidence 999999999998654No 2>1koe_A Endostatin; angiogenesis inhibitor, collagen XVIII, non-collageneous domain, heparin-binding domain; 1.50A {Mus musculus} SCOP: d.169.1.5 PDB: 1dy0_A 1dy1_A 1bnl_A Probab=100.00 E-value=3.9e-60 Score=478.42 Aligned_cols=169 Identities=47% Similarity=0.913 Sum_probs=165.7 Q ss_pred ceeEEEecCCCCCCCCCCcccchHHHHHHhhhcCCccccceeeeccccccccccCCCCC-CCcccccCCcEEecCccccc Q FBpp0290330 815 RMLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIF 893 (1023) Q Consensus 815 ~~~~~~a~~~~~~g~~~Gi~GAD~~C~~~a~~~g~~~t~rA~Ls~~~~~~~~~v~~~dr-~~p~~n~~g~vl~~~~~~l~ 893 (1023) ++|||||||+|++|||+||+|||++||+||+++|+.+|||||||+++|++++||+++|| .+||||+||||||+||+||| T Consensus 2 ~~l~lvaln~p~~GnlgGi~GAD~~C~~~A~aaGl~gtfRAfLSs~~q~~~~iV~~~dr~~~P~vN~kg~vl~~~~~~l~ 81 (172) T 1koe_A 2 PVLHLVALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSLF 81 (172) T ss_dssp CCEEEEECSSCBCSCSSHHHHHHHHHHHHHHHTTCCSCEEESCCBTTBCGGGGSCGGGTTTCCEECTTCCEEESCHHHHT T ss_pred CceEEEEeCCCcCCCcccchhHHHHHHHHHHhcCCCCeeEEEEEcccCCccceeccccccCCCeECCcCcEEeCCHHHhc Confidence 57999999999999999999999999999999999999999999999999999999999 79999999999999999999 Q ss_pred cCCCCcccCCCceEeeCCCcccCCCCCCcceEEecCCCCcccccCcccccccCCCCCceeecccCCccccccccccccCC Q FBpp0290330 894 NGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDS 973 (1023) Q Consensus 894 ~~~~~~~~~~~~i~~f~g~~~~~~~~~~~~~vw~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C~~ 973 (1023) ++++++|++++.||+||+||||+|++||+|+|||||++||+|..++||++|||++.+++|+||+|++++||+|+.++|++ T Consensus 82 ~~~~~~~~~~~~i~sfn~~dvl~d~~wp~k~vWtGs~~~G~~~~~~~C~~Wts~~~~~~G~assl~~~~ll~q~~~sCs~ 161 (172) T 1koe_A 82 SGSQGQLQPGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTETTGATGQASSLLSGRLLEQKAASCHN 161 (172) T ss_dssp SSSCSBCCTTCCCBBTTSCBTTTCTTSSSCEEECCBCTTSCBCTTSBHHHHTCCCTTCEEEEEEGGGTBSCCCEEEETTS T ss_pred CCCCccccCCCceEccCCCccccCCCCccceeEECCCCCCcCcCCCcccCCcCCCCCceEeeccCCCCCcccCcCCCcCC Confidence 99988999999999999999999999999999999999999988999999999999999999999999999999999999 Q ss_pred CcEEEEEecc Q FBpp0290330 974 KLIILCVEAL 983 (1023) Q Consensus 974 ~~~~lCve~~ 983 (1023) +|+||||||+ T Consensus 162 ~~~vLCIE~~ 171 (172) T 1koe_A 162 SYIVLCIENS 171 (172) T ss_dssp CBBCEEEECC T ss_pred CcEEEEEeec Confidence 9999999996No 3>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Probab=100.00 E-value=9.6e-34 Score=306.82 Aligned_cols=197 Identities=17% Similarity=0.252 Sum_probs=163.7 Q ss_pred CCcccchhhhcccchhccCCCCCcEEEccCCCC-CcceEEcCCCcCCCccccccCCCCC-ceEEEEEEeecCCCC---ce Q FBpp0290330 29 GQSIKDALAEYTLTDIMNNNQFAGIEFGEAEDG-FPAFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKG---GY 103 (1023) Q Consensus 29 ~~~~~D~l~e~dL~~l~~~~~~~GV~~v~G~d~-~pAyrf~~~a~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~---g~ 103 (1023) +...+|+|++|+|.+. ..+.||++++|.+. ++||+|.+.+++++|++++||++|+ ||||++|||+.+.+. |+ T Consensus 30 ~~~~~Dll~~l~l~~~---~~~~gv~~v~G~~~~~~ay~~~~~a~l~~pt~~~fP~~lp~eFsi~~tlr~~~~~~~~~~~ 106 (245) T 2uur_A 30 DLPGFDLISQFQVDKA---ASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMTGSTLKKNWN 106 (245) T ss_dssp CCCEEEHHHHTTHHHH---HTTTSSCEEECSSTTCEEEEECSSCCCEEEHHHHCTTCCCSSEEEEEEEECCGGGGGCEEE T ss_pred CCCCcceeHhhCCCCc---CCCCCeeEccCCCCCccEEEECCCcccCcchHHhccccCCCCEEEEEEEEccCCCCCCceE Confidence 4444555555554221 13789999999765 8999999999999999999999999 999999999865443 59 Q ss_pred EEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeee--ccCCCCeeEEEEEEeCCeEEEEEcCcccee Q FBpp0290330 104 LFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGV--AHVPDKWNSIALQVLSDKVSFYYDCELRNT 181 (1023) Q Consensus 104 LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v--~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t 181 (1023) ||+|++. ++.+||+|++++.. ++|+|+|++.++.. +.++|.+ +++|++||||+|+|++++|+|||||+++.+ T Consensus 107 Lfsi~~~-~~~~qlgl~l~~~~---~~v~~~y~~~~G~~--~~~~F~~~~~l~dg~WH~lalsV~~~~VtLyvDC~~~~~ 180 (245) T 2uur_A 107 IWQIQDS-SGKEQVGIKINGQT---QSVVFSYKGLDGSL--QTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIES 180 (245) T ss_dssp EEEEECT-TSCEEEEEEEEGGG---TEEEEEEEBTTSCE--EEEEECCCGGGCSSSCEEEEEEEETTEEEEEETTEEEEE T ss_pred EEEEEcC-CCCEEEEEEEcCCC---CEEEEEEECCCCCE--EEEEECCCCccCCCCEEEEEEEEECCEEEEEEeCCcCcc Confidence 9999997 67999999999863 48999999865433 5789965 999999999999999999999999999999 Q ss_pred eeccCCCceeeecCCceEEEEeccccCCC-eeeeeeeeeEEecCcccc-cccCCCCCCC Q FBpp0290330 182 TLVTREPIELVFDSASTLYIGQAGSIIGG-KFEGYLEKINVYGNPDAI-NVTCMPPPKA 238 (1023) Q Consensus 182 ~~l~r~~~~l~~~~~~~l~IGq~g~~~~~-~F~G~LQ~l~i~~dp~~a-~~~C~~~~~~ 238 (1023) +.+.+. .. |+.++.++||++.. .++ .|+|+||+|+|+|||+++ +++|++++.. T Consensus 181 ~~l~~~-~~--l~~~g~~~lG~~~~-~~~~~f~G~lQ~l~i~~~p~~a~~~~C~e~~~~ 235 (245) T 2uur_A 181 LPIKPR-GP--IDIDGFAVLGKLAD-NPQVSVPFELQWMLIHCDPLRPRRETCHELPAR 235 (245) T ss_dssp EECCCB-CC--CCCSSEEEEEEESS-CTTCBCCEEEEEEEEESCTTGGGGCCCTTCC-- T ss_pred ccccCC-Cc--cCcCCEEEEEeccC-CCCCeEEEEEEEEEEEcCCCchhhCccccCCCC Confidence 988764 33 45678999999964 455 999999999999999998 9999998754No 4>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Probab=99.97 E-value=6e-32 Score=286.09 Aligned_cols=193 Identities=17% Similarity=0.192 Sum_probs=160.3 Q ss_pred chhhhcccchhccCCC-CCcEEEccCCCC-CcceEEcCCCcCCCccccccCCC-----CC-ceEEEEEEeecCCCCceEE Q FBpp0290330 34 DALAEYTLTDIMNNNQ-FAGIEFGEAEDG-FPAFRFLQTADVKSPYRMLLPEK-----LY-EFAILITFRQSSLKGGYLF 105 (1023) Q Consensus 34 D~l~e~dL~~l~~~~~-~~GV~~v~G~d~-~pAyrf~~~a~l~~pt~~~fP~~-----~~-eFSilaTlR~~~~~~g~Lf 105 (1023) |.++.|||+++++.+. +.||++++|.+. ++||+|.+.+++..|++++||+. |+ ||||++|||+.++++++|| T Consensus 2 ~d~~~~Dll~~~~l~~~~~gv~~~~G~~~~~~ay~~~~~a~l~~~t~~~~P~~~~~l~~~~~Fsi~~tlr~~~~~~~~L~ 81 (209) T 2erf_A 2 GDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLL 81 (209) T ss_dssp CTTCEEEHHHHHTTTTSCSSEEEECCSSTTSCEEEESCGGGSCCCCHHHHHHHHHHHHHHTEEEEEEEEEECTTCEEEEE T ss_pred CCcceeeehhhhCCCCccCceEEeeCCCCCccEEEEecccccccCchHhccchhhhhcCCCcEEEEEEEEeCCCCCeEEE Confidence 5566777777777775 789999999886 99999999999999999999999 88 9999999999999999999 Q ss_pred EEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe-eeccCCCCeeEEEEEEeCCeEEEEEcCccceeeec Q FBpp0290330 106 SVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLV 184 (1023) Q Consensus 106 sI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l 184 (1023) +|++..+..+||+|++++.. ++|+|+|++.+ .++.++| .++++|++||||+|+|++++|+|||||+++.++.+ T Consensus 82 si~~~~~~~~~lgl~l~~~~---~~l~~~y~~~g---~~~~~~f~~~~l~dg~WH~lal~V~~~~V~LyvDC~~~~~~~l 155 (209) T 2erf_A 82 ALERKDHSGQVFSVVSNGKA---GTLDLSLTVQG---KQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAEL 155 (209) T ss_dssp EEEETTSSCEEEEEEEETTT---TEEEEEEEETT---EEEEEEESSCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEEC T ss_pred EEECCCCCEEEEEEEEeCCC---cEEEEEEecCC---CEEEEEEcCccccCCcEEEEEEEEECCEEEEEECCcccceeEc Confidence 99998554578999999863 47999999743 3356778 59999999999999999999999999999999988 Q ss_pred cCCCceeeecCCceEEEEeccccCC---CeeeeeeeeeEEecCcccc---cccCCC Q FBpp0290330 185 TREPIELVFDSASTLYIGQAGSIIG---GKFEGYLEKINVYGNPDAI---NVTCMP 234 (1023) Q Consensus 185 ~r~~~~l~~~~~~~l~IGq~g~~~~---~~F~G~LQ~l~i~~dp~~a---~~~C~~ 234 (1023) ++.... .++.+..+++|++.. .. ++|+|+||||+|+++|+++ +..||+ T Consensus 156 ~~~~~~-~~~~g~~~~~G~~~~-~~g~~~~F~G~iq~l~i~~~~~~~~~~~~~~c~ 209 (209) T 2erf_A 156 DVPIQS-VFTRDLASIARLRIA-KGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCS 209 (209) T ss_dssp SSCGGG-TCCTTHHHHEEEEES-CCTTTCBCCEEEEEEEEECSCCHHHHHHTTCCC T ss_pred CCcccc-ccCCCCeeeEEEEec-CCCCcccceEEeeEEEEEeCCCHHHhhhhccCC Confidence 875212 234444556777633 22 4899999999999999776 566663No 5>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 3hr2_A Probab=99.97 E-value=3.7e-29 Score=314.78 Aligned_cols=32 Identities=44% Similarity=0.767 Sum_probs=15.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q FBpp0290330 663 SGPKGEPGVDSRSSFFGDASYYGRPEPPRQPG 694 (1023) Q Consensus 663 ~G~~G~~G~~g~~~~~g~~~~~g~pgppg~~g 694 (1023) +|+.|++|..+..+..|..+.+|++++++++| T Consensus 997 ~G~~G~~G~~G~~G~~G~~G~~G~pGppGpPG 1028 (1056) T 3hqv_A 997 PGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPG 1028 (1056) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 44444444444444445444455555555544No 6>3hqv_B Collagen alpha-2(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 3hr2_B Probab=99.97 E-value=5.4e-29 Score=312.66 Aligned_cols=29 Identities=38% Similarity=0.610 Sum_probs=10.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q FBpp0290330 666 KGEPGVDSRSSFFGDASYYGRPEPPRQPG 694 (1023) Q Consensus 666 ~G~~G~~g~~~~~g~~~~~g~pgppg~~g 694 (1023) .|++|..+..+..|..+.+|++++|+++| T Consensus 995 ~G~~G~~G~~G~~G~~G~~G~pGppGpPG 1023 (1028) T 3hqv_B 995 VGPAGVRGSQGSQGPAGPPGPPGPPGPPG 1023 (1028) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 33333333333333333333444444333No 7>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Probab=99.97 E-value=2.1e-30 Score=281.67 Aligned_cols=197 Identities=16% Similarity=0.213 Sum_probs=154.3 Q ss_pred chhhhcccchhccCCC-CCcEEEccCCCC-CcceEEcCCCcCCCccccccCCC---C--C-ceEEEEEEeecCCCCceEE Q FBpp0290330 34 DALAEYTLTDIMNNNQ-FAGIEFGEAEDG-FPAFRFLQTADVKSPYRMLLPEK---L--Y-EFAILITFRQSSLKGGYLF 105 (1023) Q Consensus 34 D~l~e~dL~~l~~~~~-~~GV~~v~G~d~-~pAyrf~~~a~l~~pt~~~fP~~---~--~-eFSilaTlR~~~~~~g~Lf 105 (1023) |+...|||+++++++. +.||++++|.+. .+||+|.+.+.+..+++++||.. | + ||||++|||+.++++|+|| T Consensus 12 ~d~~~~DLl~~lgl~~~~~GV~~~~G~~~~~~Ay~~~~~~~~~~~t~~~~P~g~~~~~~p~eFsi~~tlr~~~~~~~~Lf 91 (251) T 1za4_A 12 GDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLL 91 (251) T ss_dssp ---CEEEHHHHHCCCCTTSSEEEECCSSTTSCEEEESCGGGSCCCCHHHHHHHHHHHHHHTEEEEEEEEEECTTCEEEEE T ss_pred CcccCcceehhhCCCCccCCeEEccCCCCCccEEEEcCcccccCChhHhCcchhhccCCCCcEEEEEEEEecCCCCcEEE Confidence 4466788888877776 689999999886 99999999999999999999994 8 8 9999999999999999999 Q ss_pred EEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe-eeccCCCCeeEEEEEEeCCeEEEEEcCccceeeec Q FBpp0290330 106 SVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLV 184 (1023) Q Consensus 106 sI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l 184 (1023) +|++..+..++|+|+|++.. ++|+|+|++.+ .+++++| .++++|++||||+|+|++++|+|||||+++.++.+ T Consensus 92 si~d~~~~~q~lgv~l~g~~---~~l~~~y~~~G---~~~~~~f~~~~L~dg~WH~lalsV~~~~VtLyvDC~~~~~~~l 165 (251) T 1za4_A 92 ALERKDHSGQVFSVVSNGKA---GTLDLSLTVQG---KQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAEL 165 (251) T ss_dssp EEEETTSSCEEEEEEEETTT---TEEEEEEEETT---EEEEEEESSCCCCSSSCEEEEEEEETTEEEEEETTSCCEEEEC T ss_pred EEEcCCCCEEEEEEEEeCCC---cEEEEEEecCC---CEEEEEEeccccCCCcEEEEEEEEECCEEEEEECCcccccccc Confidence 99998555556899999863 48999999843 3357788 59999999999999999999999999999999988 Q ss_pred cCCCceeeecCCceEEEEeccc--cCCCeeeeeeeeeEE--ecCcccc-cccCCCCCC Q FBpp0290330 185 TREPIELVFDSASTLYIGQAGS--IIGGKFEGYLEKINV--YGNPDAI-NVTCMPPPK 237 (1023) Q Consensus 185 ~r~~~~l~~~~~~~l~IGq~g~--~~~~~F~G~LQ~l~i--~~dp~~a-~~~C~~~~~ 237 (1023) ++....+ +..+..++.+.+.. ...+.|+|+||||+| +|+++++ ++.||+++. T Consensus 166 ~~~~~~~-~~~G~~~~g~~~~~~g~~~~~f~G~lq~L~Iv~~~d~~~a~~~~~Ce~~~ 222 (251) T 1za4_A 166 DVPIQSV-FTRDLASIARLRIAKGGVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSST 222 (251) T ss_dssp SSCGGGT-SCTTGGGTEEEEESCCSTTCBCCEEEEEEEEECSCCHHHHHHHTTCC--- T ss_pred cCCcccc-cCCCcEEEEEEEecCCCCccceEEEEEEEEEEccCChhhhccccCCCCCC Confidence 8752222 23333232222211 123589999999999 7888777 566766654No 8>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A Probab=99.57 E-value=1.2e-15 Score=126.07 Aligned_cols=52 Identities=27% Similarity=0.484 Sum_probs=50.5 Q ss_pred cceeeccHHHHHhccCCCCCcceeeecccceEEEEEcCCceeecccccccCC Q FBpp0290330 727 GAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIA 778 (1023) Q Consensus 727 g~~~~~~~~~m~~~s~~~~eGtlayi~~~~~l~vrv~~gw~~i~lg~~~p~~ 778 (1023) |+++|+|+++|+++++..+||||+|++|++||||||+||||+|+|+.++|++ T Consensus 4 gv~~~~t~~~ml~~~~~~~eGtL~yv~d~~eLyiRVr~Gwr~V~Lg~~~pip 55 (56) T 3hsh_A 4 GVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVQNGFRKVQLEARTPLP 55 (56) T ss_dssp CEEEESSHHHHHHHGGGSCTTCEEEETTTTEEEEEETTEEEEECEEEEEECC T ss_pred cEEEEecHHHHHhhCccCCCeEEEEEEecceEEEEEcCcEEEEeecccccCC Confidence 6899999999999999999999999999999999999999999999999986No 9>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens} Probab=99.57 E-value=1.8e-15 Score=124.15 Aligned_cols=52 Identities=35% Similarity=0.742 Sum_probs=49.7 Q ss_pred cceeeccHHHHHhccCCCCCcceeeecccceEEEEEcCCceeecccccccCC Q FBpp0290330 727 GAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIA 778 (1023) Q Consensus 727 g~~~~~~~~~m~~~s~~~~eGtlayi~~~~~l~vrv~~gw~~i~lg~~~p~~ 778 (1023) ++++|+|+++|+++++..+||||+|++|+++|||||+||||+|+||+++|++ T Consensus 2 ~v~~~~t~~~M~~~~~~~~eGtL~yv~d~~eLyiRVr~Gwr~V~Lg~~ip~p 53 (54) T 3n3f_A 2 LVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIP 53 (54) T ss_dssp CEEEESSHHHHHTTGGGSCTTEEEEETTTTEEEEEETTEEEECCCCCCCCCC T ss_pred CcEEEecHHHHHhhCccCCCeEEEEEEecceEEEEEcCceeeeeecccccCC Confidence 4789999999999999999999999999999999999999999999999874No 10>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3v65_A Probab=98.93 E-value=2.6e-08 Score=102.67 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=101.8 Q ss_pred cceEEcCCCcCCCcccc-------ccCCC-CC-ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEE Q FBpp0290330 63 PAFRFLQTADVKSPYRM-------LLPEK-LY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSL 133 (1023) Q Consensus 63 pAyrf~~~a~l~~pt~~-------~fP~~-~~-eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l 133 (1023) .|+.|.....+..+... .||.. .. +|+|.++||... ..+.||...+..+...+|.|+|..- .|.| T Consensus 3 ~~~~F~G~syv~~~~~~~~~~~~~~~~~~~~~~~~~is~~frT~~-~~glll~~~~~~~~~~~~~l~l~~G-----~l~~ 76 (191) T 3v64_A 3 ETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEA-TQGLVLWIGKAAERADYMALAIVDG-----HLQL 76 (191) T ss_dssp CEEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSC-SSEEEEEESCCSTTCCEEEEEEETT-----EEEE T ss_pred cceeECCceeEEecCccccccccccCcccccccceEEEEEEEeCC-CCeEEEEeCCCCCCCCEEEEEEECC-----EEEE Confidence 46777665555444322 23332 23 899999999765 4478777655323467888888653 4777 Q ss_pred EEEecccCcceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc------ Q FBpp0290330 134 VYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI------ 207 (1023) Q Consensus 134 ~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~------ 207 (1023) .|...++. ..+.....+.|++||+|+|...+..++||||+....+...+.....++ ....+|||..... T Consensus 77 ~~~~g~~~---~~~~~~~~v~Dg~WH~V~v~~~~~~~~L~vD~~~~~~~~~~~~~~~l~--~~~~l~iGg~~~~~~~~~~ 151 (191) T 3v64_A 77 SYDLGSQP---VVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLD--TDGALWLGGLQKLPVGQAL 151 (191) T ss_dssp EEESSSCC---EEEEEEEECTTSSCEEEEEEEETTEEEEEETTSCCEEEECCTTCCCEE--ECSEEEESCCSSCCSSCCS T ss_pred EEECCCCc---EEEEeCCEecCCCcEEEEEEEEccEEEEEECCcceEeeECCCCcccCc--CCCCEEECCCCcccccccc Confidence 77654322 233346678899999999999999999999998776654433333343 3578999976321 Q ss_pred ---CCCeeeeeeeeeEEecCc Q FBpp0290330 208 ---IGGKFEGYLEKINVYGNP 225 (1023) Q Consensus 208 ---~~~~F~G~LQ~l~i~~dp 225 (1023) ....|+|-|++|+|...+ T Consensus 152 ~~~~~~~F~Gci~~v~i~~~~ 172 (191) T 3v64_A 152 PKAYGTGFVGCLRDVVVGHRQ 172 (191) T ss_dssp CGGGTSBCEEEEEEEEETTEE T ss_pred cccccCCCeEEeeEEEECCEE Confidence 135699999999996543No 11>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3sh5_A Probab=98.92 E-value=1.6e-08 Score=104.57 Aligned_cols=151 Identities=13% Similarity=0.107 Sum_probs=101.8 Q ss_pred CcceEEcCCCcCCCccccccCCCC-C-ceEEEEEEeecCCCCceEEEEEcC----CCCeEEEEEEEcccccCceeEEEEE Q FBpp0290330 62 FPAFRFLQTADVKSPYRMLLPEKL-Y-EFAILITFRQSSLKGGYLFSVVNP----LDTVVQLGVHLSPVVKNSYNVSLVY 135 (1023) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~~-~-eFSilaTlR~~~~~~g~LfsI~~~----~~~~~qlgL~ls~~~k~~~~i~l~Y 135 (1023) ..+..|.....+..+.. .|+... . +|+|.++||.... .+.||.+... .....+|.|.|... .|.|.| T Consensus 5 ~~~~~F~g~sy~~~~~~-~~~~~~~~~~~~is~~frT~~~-~Glll~~~~~~~~~~~~~d~~~l~l~~G-----~l~~~~ 77 (195) T 3sh4_A 5 QYGAYFHDDGFLAFPGH-VFSRSLPEVPETIELEVRTSTA-SGLLLWQGVEVGEAGQGKDFISLGLQDG-----HLVFRY 77 (195) T ss_dssp TTEEEEEEEEEEEECGG-GGCCCSTTCCEEEEEEEEECCS-SEEEEEECCCTTCTTSTTCEEEEEEETT-----EEEEEE T ss_pred ccccEECCCceEEECcc-cccccccCCCcEEEEEEEeCCC-CeEEEEccCcccCCCCCCCeEEEEEECC-----EEEEEE Confidence 34567766555665554 334332 4 8999999997644 4788876531 23456888888654 477777 Q ss_pred EecccCcceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc-------C Q FBpp0290330 136 TQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------I 208 (1023) Q Consensus 136 ~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~ 208 (1023) ....+. ..+.....+.|++||+|+|...+..++|||||....+...+.....+ +....+|||..... . T Consensus 78 ~~g~g~---~~i~s~~~l~Dg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~l--~~~~~l~iGG~~~~~~~~~~~~ 152 (195) T 3sh4_A 78 QLGSGE---ARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAV--NAKGSVYIGGAPDVATLTGGRF 152 (195) T ss_dssp ECSSCE---EEEEEEEECCSSSCEEEEEEEETTEEEEEETTCCCEEEECCSSCCCC--CCCSCEEESCCTTHHHHTTTSC T ss_pred ECCCCE---EEEEcCCeecCCCeEEEEEEEeCCEEEEEECCcceeeEECCCcccee--cCCCCEEECCCCCccccccccc Confidence 644322 22334677889999999999999999999999987665444322233 44678999975321 1 Q ss_pred CCeeeeeeeeeEEecC Q FBpp0290330 209 GGKFEGYLEKINVYGN 224 (1023) Q Consensus 209 ~~~F~G~LQ~l~i~~d 224 (1023) ...|+|-|++|+|.-. T Consensus 153 ~~~F~GCi~~v~i~~~ 168 (195) T 3sh4_A 153 SSGITGCVKNLVLHSA 168 (195) T ss_dssp CCCCSEEEEEEEEEEC T ss_pred cCCcEEEeeEEEECCc Confidence 4569999999999653No 12>4pbp_A C-reactive protein; acute phase protein, pentraxin; 1.65A {Danio rerio} PDB: 4pbo_A Probab=98.85 E-value=3e-08 Score=103.48 Aligned_cols=158 Identities=17% Similarity=0.165 Sum_probs=102.2 Q ss_pred EEccCCCCCcceEEcCC---CcCCCccccccCCCCCceEEEEEEeecCC--CCceEEEEEcCCCCeEEEEEEEcccccCc Q FBpp0290330 54 EFGEAEDGFPAFRFLQT---ADVKSPYRMLLPEKLYEFAILITFRQSSL--KGGYLFSVVNPLDTVVQLGVHLSPVVKNS 128 (1023) Q Consensus 54 ~~v~G~d~~pAyrf~~~---a~l~~pt~~~fP~~~~eFSilaTlR~~~~--~~g~LfsI~~~~~~~~qlgL~ls~~~k~~ 128 (1023) +++.|.. ..|++|... ..+..+....+ ...+|||.+|+|+... ....||+..+.. .. .|.|.++.. T Consensus 2 ~~~~g~~-g~al~F~g~s~~~~v~~~~~~~~--~~~~fTi~~Wvk~~~~~~~~~~i~s~~~~~-~~-~~~l~~~~~---- 72 (210) T 4pbp_A 2 EFFKNLS-GKVLQFKTATDNSYVKLYPEKPL--SLSAFTLCMRVATELPLDREVILFAYYTPD-VD-ELNVWRERD---- 72 (210) T ss_dssp ---CCCT-TEEEEECSCCSSCEEEEECSSCC--CBSEEEEEEEEECCSCTTSCEEEEEEEETT-EE-EEEEEECTT---- T ss_pred eeeeccc-CcEEECCCCCccCeEEEcCCCCC--CcCCEEEEEEEEcCCCCCCCceEEEEEcCC-CC-cEEEEEcCC---- Confidence 4444443 357888754 22433332211 1239999999999765 457899988753 22 666666543 Q ss_pred eeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeecCCceEEEEeccc Q FBpp0290330 129 YNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS 206 (1023) Q Consensus 129 ~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~ 206 (1023) ..+.|.....+. .+.+...+.+++||||++.+.+. .++||||.+++.+..+... ..+.....++||+... T Consensus 73 ~~~~~~~~~~~~-----~~~~~~~~~~~~W~hva~t~d~~~g~~~lYvnG~~~~~~~~~~~---~~~~~~~~l~iG~~~~ 144 (210) T 4pbp_A 73 GRVSLYIQSSKD-----AAFFRLPPLSTLQTHLCVAWESATGLTAFWMDGRRSLHQVYRKG---YSIRSGGTVVLGQDPD 144 (210) T ss_dssp SCEEEEESCSSC-----CEEECCCCCCSSCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCS T ss_pred CcEEEEEEcCCc-----eEEecCcccCCCEEEEEEEEECCCCcEEEEECCeEccCcccCCC---cEECCCCeEEEccccc Confidence 245555533221 13445667799999999999976 9999999999887544332 1234567899998632 Q ss_pred c------CCCeeeeeeeeeEEecCcccc Q FBpp0290330 207 I------IGGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 207 ~------~~~~F~G~LQ~l~i~~dp~~a 228 (1023) . ....|.|.|.+|+|+...... T Consensus 145 ~~gg~~~~~~~f~G~idevri~~~aLs~ 172 (210) T 4pbp_A 145 SYVGSFDVDQSFVGEIANLQMWDYVLSS 172 (210) T ss_dssp BTTBCCCGGGCCCEEEEEEEEESSCCCH T ss_pred cCCCccCccccceEEecceEEecccCCH Confidence 1 236799999999999987443No 13>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Probab=98.84 E-value=6.2e-08 Score=101.26 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=88.2 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1023) +|+|.++||.... ++.||...+..+...+|.|+|..- .|.|.|...++. ..+.....+.|++||+|+|... T Consensus 49 ~~~is~~frT~~~-~GlLl~~~~~~~~~d~~~l~l~~G-----~l~~~~~~g~g~---~~l~s~~~v~Dg~WH~V~v~~~ 119 (204) T 1pz7_A 49 SNHFELSIKTEAT-QGLILWSGKGLERSDYIALAIVDG-----FVQMMYDLGSKP---VVLRSTVPINTNHWTHIKAYRV 119 (204) T ss_dssp EEEEEEEEEECCS-SEEEEEESCCSTTCCEEEEEEETT-----EEEEEEESSSCC---EEEEEEEECCSSSCEEEEEEEE T ss_pred ceEEEEEEEeCCC-CeEEEEecCCCCCCceEEEEEECC-----EEEEEEECCCCe---EEEECCccccCCCcEEEEEEEE Confidence 7999999997644 567776655323567888888754 477777543322 2333467788999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc---------CCCeeeeeeeeeEEec Q FBpp0290330 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI---------IGGKFEGYLEKINVYG 223 (1023) Q Consensus 167 ~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~---------~~~~F~G~LQ~l~i~~ 223 (1023) +..++||||+....+...+.....|+ ....+|||..... ....|.|-|++|+|.. T Consensus 120 ~~~~~L~VD~~~~~~~~~~~~~~~l~--~~~~l~lGG~~~~~~~~~~~~~~~~~F~GCi~~v~in~ 183 (204) T 1pz7_A 120 QREGSLQVGNEAPITGSSPLGATQLD--TDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDR 183 (204) T ss_dssp TTEEEEEETTSCCEEEECCSSCCCEE--ECCEEEESSCSCCSTTTTSCGGGGSBCEEEEEEEEETT T ss_pred eCEEEEEECCeeeEeeecCCCcceec--CCCCEEECCCCccccccccccccCCCCeEEEeEEEECC Confidence 99999999998875544333223343 3578999875321 1346999999999943No 14>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} SCOP: b.29.1.0 Probab=98.83 E-value=7.2e-08 Score=99.42 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=98.3 Q ss_pred ceEEcCCCcCCCccccccCCCCC-ceEEEEEEeecCCCCceEEEEEcC-CCCeEEEEEEEcccccCceeEEEEEEecccC Q FBpp0290330 64 AFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNP-LDTVVQLGVHLSPVVKNSYNVSLVYTQADQN 141 (1023) Q Consensus 64 Ayrf~~~a~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~LfsI~~~-~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~ 141 (1023) +..|...+.+..+....++..+. +|+|.++||.... .+.||...+. .....+|.|.|..- .|.|.|....+. T Consensus 11 ~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~~-~GlLl~~~~~~~~~~d~~~l~l~~G-----~l~~~~~~g~~~ 84 (189) T 3pve_A 11 LADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGP-SGLLLYNGQKTDGKGDFVSLALHNR-----HLEFRYDLGKGA 84 (189) T ss_dssp CEEEESSCEEEECCGGGC-------CEEEEEEEESSS-CEEEEEEESCC-CCSCEEEEEEETT-----EEEEEEESSSCE T ss_pred eeEECCCceEEEcCcccccccccceEEEEEEEecCCC-CeEEEEecCCCCCCCCeEEEEEECC-----EEEEEEECCCCe Confidence 45676666666666655554555 8999999998654 4688877753 12356778887654 477777643321 Q ss_pred cceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc--------CCCeee Q FBpp0290330 142 IGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--------IGGKFE 213 (1023) Q Consensus 142 ~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--------~~~~F~ 213 (1023) ..+.....+.|++||+|+|...+..++||||+....+...+.....|+ ....+|||..... ....|. T Consensus 85 ---~~~~s~~~v~Dg~WH~V~v~~~~~~~~L~vD~~~~~~~~~~~~~~~l~--~~~~l~iGG~~~~~~~~~~~~~~~~F~ 159 (189) T 3pve_A 85 ---AIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLN--LKEPLYVGGAPDFSKLARGAAVASGFD 159 (189) T ss_dssp ---EEEECSSCCCTTSEEEEEEEEETTEEEEEETTSCCEEEECCSSCCCCC--CCSCEEESCCSCGGGSCGGGCCCSBCE T ss_pred ---EEEeCCCcccCCCeEEEEEEEeCCEEEEEECCCceeeeEcCCCcceec--CCCCEEECccCChhhcccccccCCCCe Confidence 223335678899999999999999999999998765544433223333 3567999864221 235799 Q ss_pred eeeeeeEEecC Q FBpp0290330 214 GYLEKINVYGN 224 (1023) Q Consensus 214 G~LQ~l~i~~d 224 (1023) |-|++|+|... T Consensus 160 GCi~~v~i~~~ 170 (189) T 3pve_A 160 GAIQLVSLRGH 170 (189) T ss_dssp EEEEEEEETTE T ss_pred EEeeEEEECCE Confidence 99999999654No 15>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Probab=98.79 E-value=1.7e-07 Score=98.21 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=103.3 Q ss_pred CcceEEcCC---CcCCCccccccCCCCCceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEec Q FBpp0290330 62 FPAFRFLQT---ADVKSPYRMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQA 138 (1023) Q Consensus 62 ~pAyrf~~~---a~l~~pt~~~fP~~~~eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~ 138 (1023) ..|+.|... +.+..+....|+ ...+|||.+|+|+.......||+..+. .....|.|.+....+....+.|+. . T Consensus 6 ~~al~F~G~s~~~yv~~~~~~~l~-~~~~fTi~~Wvk~~~~~~~~i~s~~~~-~~~~~~~l~~~~~~~~~~~~~~~~--~ 81 (217) T 3flp_A 6 DVKISFPGTQNPKFPHLRFMQTLP-AVRQLTVCQRIKPFHRNTGYIFSCATS-NQDNQFITSMYVKSDGTLNLGLQV--N 81 (217) T ss_dssp GEEEEECCCBTTBCCEEEESSCBC-CBSEEEEEEEEEESCSSCEEEEEEEET-TEEEEEEEEEEECTTSEEEEEEEE--T T ss_pred CeEEECCCCCccCeEEeccCCCCC-CcCeEEEEEEEEeCCCCCcEEEEEECC-CCCCeEEEEEccCCCcceEEEEEE--C Confidence 467888764 445555543443 223999999999876566779998875 334556666654321112244433 3 Q ss_pred ccCcceeEEEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeee-ccCCCceeeecCCceEEEEecccc------CC Q FBpp0290330 139 DQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTL-VTREPIELVFDSASTLYIGQAGSI------IG 209 (1023) Q Consensus 139 ~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~--~VtLyVDC~~~~t~~-l~r~~~~l~~~~~~~l~IGq~g~~------~~ 209 (1023) +.. ...+.....+.+++||||++...+. .++||||.+++.+.. +... ..+.....++||+.... .. T Consensus 82 g~~--~~~~~~~~~~~~~~W~hva~t~d~~~g~~~lYvnG~~~~~~~~~~~~---~~~~~~~~l~iG~~~~~~gg~~~~~ 156 (217) T 3flp_A 82 ASS--NKYISCPIEIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKG---HQISAGGTVVIGQEQDKIGGGFEEQ 156 (217) T ss_dssp TCC--CEEEEEEEECCTTSCEEEEEEEETTTTEEEEEETTEEEEEESCSSTT---CCBCSCBEEEESSCCSBTTBCCCGG T ss_pred Ccc--ceEEecCCccCCCCEEEEEEEEECCCCeEEEEECCEEcccccccCcC---cEeCCCCeEEECcccccCCCCcCcC Confidence 322 1223345667799999999999976 999999999987742 2221 12345778999986321 23 Q ss_pred CeeeeeeeeeEEecCcccc Q FBpp0290330 210 GKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 210 ~~F~G~LQ~l~i~~dp~~a 228 (1023) ..|.|.|.+|+|+..+... T Consensus 157 ~~f~G~idevri~~~aLs~ 175 (217) T 3flp_A 157 ESWSGELSDLQVWDEALTT 175 (217) T ss_dssp GCCCEEEEEEEEESSCCCH T ss_pred CCceEEeeeEEEECccCCH Confidence 6799999999999987544No 16>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} SCOP: b.29.1.4 Probab=98.73 E-value=2.4e-07 Score=94.97 Aligned_cols=127 Identities=18% Similarity=0.259 Sum_probs=87.9 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEE-eeeccCCCCeeEEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS-FGVAHVPDKWNSIALQV 165 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~s-F~v~l~dg~WHrlaLsV 165 (1023) .|+|.++||... ..+.||..- +...+|.|+|..- .|.|.|....+.. ...+. -...+.|++||+|++.. T Consensus 29 ~~~i~l~frT~~-~~GlLl~~~---~~~d~~~l~l~~G-----~l~~~~~~g~g~~-~~~~~~~~~~l~Dg~WH~V~v~~ 98 (184) T 2h0b_A 29 SDEITLSFKTLQ-RNGLMLHTG---KSADYVNLALKNG-----AVSLVINLGSGAF-EALVEPVNGKFNDNAWHDVKVTR 98 (184) T ss_dssp EEEEEEEEEESC-SCEEEEEEC---CTTEEEEEEEETT-----EEEEEEEESSCEE-EEEECCSSSCSSSSSCEEEEEEE T ss_pred ccEEEEEEEeCC-CCEEEEEec---CCCCEEEEEEECC-----EEEEEEECCCCeE-EEEEccCCCcccCCCeEEEEEEE Confidence 799999999865 457888662 3467888888654 4777776533211 11111 24567899999999999 Q ss_pred eCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc-------CCCeeeeeeeeeEEecCc Q FBpp0290330 166 LSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------IGGKFEGYLEKINVYGNP 225 (1023) Q Consensus 166 ~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~~~~F~G~LQ~l~i~~dp 225 (1023) .+..++||||+....+.........++ ....+|||-.... ....|.|-|++|+|...+ T Consensus 99 ~~~~~~L~VD~~~~~~~~~~~~~~~l~--~~~~l~iGG~~~~~~~~~~~~~~~F~GCi~~v~i~~~~ 163 (184) T 2h0b_A 99 NLRQVTISVDGILTTTGYTQEDYTMLG--SDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNND 163 (184) T ss_dssp ETTEEEEEETTTEEEEEECSTTCCCEE--ECSEEEESCCTTGGGSTTCSCCCBCEEEEEEEEEEESS T ss_pred eCCEEEEEECCeeeeeeeCCCCceeec--CCCCEEECCCCccccccCCcccCCCEEEeeEEEECCEE Confidence 999999999999876554433222333 3567999875321 135799999999997664No 17>4avs_A Serum amyloid P-component; sugar binding protein, glycoprotein, disulfide bond, lectin, metal-binding; HET: NAG N7P; 1.40A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* 3kqr_A* 4avt_A* 4avv_A* 4ayu_A* Probab=98.71 E-value=2.4e-07 Score=96.23 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=99.4 Q ss_pred CcceEEcCCC---cCCCccccccCCCCCceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEec Q FBpp0290330 62 FPAFRFLQTA---DVKSPYRMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQA 138 (1023) Q Consensus 62 ~pAyrf~~~a---~l~~pt~~~fP~~~~eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~ 138 (1023) ..|+.|.... .+..+.. ++....+|||.+|+|+.......||+..+. .....|.|.++.. ..+.|+. . T Consensus 6 G~al~F~g~~~~~yv~~~~~--~~~~~~~fTi~~Wvk~~~~~~~~i~s~~~~-~~~~~~~l~~~~~----~~~~~~~--~ 76 (204) T 4avs_A 6 GKVFVFPRESVTDHVNLITP--LEKPLQNFTLCFRAYSDLSRAYSLFSYNTQ-GRDNELLVYKERV----GEYSLYI--G 76 (204) T ss_dssp TEEEEECSCCSSCEEEECCC--CCSCBSEEEEEEEEECCCCSCEEEEEEEET-TEEEEEEEEEEET----TEEEEEE--T T ss_pred ccEEECCCCCCCCeEEEecC--CCCCccCEEEEEEEEcCCCCCcEEEEEEcC-CCCceEEEEEeCC----CeEEEEE--C Confidence 3577776543 2332221 222223999999999887677889998775 3344566655432 2455554 2 Q ss_pred ccCcceeEEEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc------CCC Q FBpp0290330 139 DQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI------IGG 210 (1023) Q Consensus 139 ~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~------~~~ 210 (1023) + ....+...+.+++||||++...+. .++||||++++.+..+... ..+.....++||+.... ... T Consensus 77 ~-----~~~~~~~~~~~~~W~Hva~t~d~~~g~~~lYvnG~~~~~~~~~~~---~~~~~~~~l~iG~~~~~~gg~~~~~~ 148 (204) T 4avs_A 77 R-----HKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQG---YFVEAQPKIVLGQEQDSYGGKFDRSQ 148 (204) T ss_dssp T-----EEEEEECCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSSSSCCCCGGG T ss_pred C-----EEEEecccccCCCEEEEEEEEECCCCeEEEEECCeEecccccCCC---ceECCCceEEEcccccccCccccCCc Confidence 2 123445667799999999999976 9999999999887544332 11345678999986321 136 Q ss_pred eeeeeeeeeEEecCcccc Q FBpp0290330 211 KFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 211 ~F~G~LQ~l~i~~dp~~a 228 (1023) .|.|.|.+|+|+..+... T Consensus 149 ~f~G~idevri~~~aLs~ 166 (204) T 4avs_A 149 SFVGEIGDLYMWDSVLPP 166 (204) T ss_dssp CCCEEEEEEEEESSCCCH T ss_pred cceEEeceeEEECccCCH Confidence 799999999999987443No 18>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Probab=98.70 E-value=3e-07 Score=94.35 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=98.0 Q ss_pred CcceEEcCCCcCCCccccccCCC-CC-ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecc Q FBpp0290330 62 FPAFRFLQTADVKSPYRMLLPEK-LY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQAD 139 (1023) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~-~~-eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~ 139 (1023) ..++.|.....+.. .+|.. .. .|+|.++||... ..+.||...+. +...+|.|+|..- .|.|.|.... T Consensus 5 ~~~~~F~G~s~~~~----~~p~~~~~~~~~isl~frT~~-~~GlLl~~~~~-~~~d~l~l~L~~G-----~l~~~~~~g~ 73 (182) T 2r16_A 5 ATVLSYDGSMFMKI----QLPVVMHTEAEDVSLRFRSQR-AYGILMATTSR-DSADTLRLELDAG-----RVKLTVNLGK 73 (182) T ss_dssp CCEEEEESSCCEEE----EEEEEEEESEEEEEEEEECSC-SSEEEEEEECS-SSCCEEEEEEETT-----EEEEEEESSS T ss_pred ceeEEEcCCeeEEE----ECCCCCCccccEEEEEEEeCC-CCEEEEEcCCC-CCCCEEEEEEECC-----EEEEEEEcCC Confidence 45677765533211 12222 23 799999999764 56899988874 4467888888654 4777776433 Q ss_pred cCcceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEeccc-----cCCCeeee Q FBpp0290330 140 QNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS-----IIGGKFEG 214 (1023) Q Consensus 140 ~~~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~-----~~~~~F~G 214 (1023) +. ..+.....+.|++||+|.|...+..++|+||+....+...+.....|+++ .+|||-... .....|+| T Consensus 74 ~~---~~~~~~~~l~Dg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~l~~~---~l~~Gg~~~~~~~~~~~~~F~G 147 (182) T 2r16_A 74 GP---ETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH---NIETGIITERRYLSSVPSNFIG 147 (182) T ss_dssp CC---EEEEECSSCCSSSCEEEEEEEETTEEEEEETTCCEEEEECCSSCCCEEEE---EEEESSCCCCTTCSSCCCCCEE T ss_pred cc---eEeccCCcccCCCcEEEEEEEECCEEEEEEeCCceeeEEcCCCCcEEEec---ceEEcCcccccccCCCCCCCEE Confidence 22 22334567889999999999999999999999987655444433445443 288875421 12357999 Q ss_pred eeeeeEEecCc Q FBpp0290330 215 YLEKINVYGNP 225 (1023) Q Consensus 215 ~LQ~l~i~~dp 225 (1023) -|++|+|...+ T Consensus 148 Ci~~v~in~~~ 158 (182) T 2r16_A 148 HLQSLTFNGMA 158 (182) T ss_dssp EEEEEEETTEE T ss_pred EEeEEEECCEE Confidence 99999995543No 19>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Probab=98.67 E-value=3.3e-07 Score=95.21 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=99.1 Q ss_pred CcceEEcCC---CcCCCccccccCCCCCceEEEEEEeecCC--CCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEE Q FBpp0290330 62 FPAFRFLQT---ADVKSPYRMLLPEKLYEFAILITFRQSSL--KGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYT 136 (1023) Q Consensus 62 ~pAyrf~~~---a~l~~pt~~~fP~~~~eFSilaTlR~~~~--~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~ 136 (1023) ..|+.|... ..+..+... +....+|||.+|+|+... ....||+..+. .....|.|.++.. ..+.|+. T Consensus 6 g~al~F~g~s~~~yv~~~~~~--~~~~~~fTi~~Wvk~~~~~~~~~~i~s~~~~-~~~~~~~l~~~~~----~~~~~~~- 77 (206) T 3pvn_A 6 RKAFVFPKESDTSYVSLKAPL--TKPLKAFTVCLHFYTELSSTRGYSIFSYATK-RQDNEILIFWSKD----IGYSFTV- 77 (206) T ss_dssp TEEEEECSCCSSCEEEECCCC--CSCBSEEEEEEEEEESGGGTCCEEEEEEEET-TEEEEEEEEEETT----TEEEEEE- T ss_pred CCEEECCCCCccCeEEEcCCC--CCChhcEEEEEEEEeCCCCCCCcEEEEEECC-CCCCEEEEEEeCC----CEEEEEE- Confidence 357788654 223333221 111239999999999754 67789998775 3344566655433 2455544 Q ss_pred ecccCcceeEEEeeeccCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc------C Q FBpp0290330 137 QADQNIGRKLASFGVAHVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI------I 208 (1023) Q Consensus 137 ~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~------~ 208 (1023) .+ ....+...+.+++||||++...+. .++||||.+++.+..+... ..+.....++||+.... . T Consensus 78 -~~-----~~~~~~~~~~~~~W~hva~t~d~~~g~~~lYvnG~~~~~~~~~~~---~~~~~~~~l~iG~~~~~~gg~~~~ 148 (206) T 3pvn_A 78 -GG-----SEILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKG---YTVGAEASIILGQEQDSFGGNFEG 148 (206) T ss_dssp -TT-----EEEEEECSSCCSSCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSBTTBCCCG T ss_pred -CC-----eeeEeecccCCCCcEEEEEEEECCCceEEEEECCcCcccccccCC---ceECCCCEEEEeeccccCCCCccc Confidence 22 123445677799999999999975 8999999999887544332 11345678999986321 2 Q ss_pred CCeeeeeeeeeEEecCcccc Q FBpp0290330 209 GGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 209 ~~~F~G~LQ~l~i~~dp~~a 228 (1023) ...|.|.|.+|+|+...... T Consensus 149 ~~~f~G~idevri~~~aLs~ 168 (206) T 3pvn_A 149 SQSLVGDIGNVNMWDFVLSP 168 (206) T ss_dssp GGCCCEEEEEEEEESSCCCH T ss_pred ccceEEEecceEEEcccCCH Confidence 36799999999999987443No 20>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} SCOP: b.29.1.4 PDB: 3vkf_C* 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Probab=98.58 E-value=8.7e-07 Score=90.87 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=87.5 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEE-EeeeccCCCCeeEEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLA-SFGVAHVPDKWNSIALQV 165 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~-sF~v~l~dg~WHrlaLsV 165 (1023) .|+|.+.||... ..+.||.+.+..+...+|.|+|..- .|.|.|....+. ... .....+.|++||+|.|.. T Consensus 30 ~~~isl~frT~~-~~GlLl~~~~~~~~~d~l~l~L~~G-----~l~~~~~~g~~~---~~~~~~~~~l~Dg~WH~V~v~r 100 (178) T 3bod_A 30 ADRLAIGFSTVQ-KEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDD---IAIEESNAIINDGKYHVVRFTR 100 (178) T ss_dssp EEEEEEEEECCC-SSEEEEEEEESSSSCCEEEEEEETT-----EEEEEEESSSCC---EEEECCSSCCCSSSCEEEEEEE T ss_pred CCEEEEEEEECC-CCEEEEEEcCCCCCCCEEEEEEECC-----EEEEEEEcCCCc---EEEecCCcccCCCCcEEEEEEE Confidence 788889998764 4578888877423456888888654 477777644322 122 225678899999999999 Q ss_pred eCCeEEEEEcCccceee-eccCCCceeeecCCceEEEEeccccCCCeeeeeeeeeEEecC Q FBpp0290330 166 LSDKVSFYYDCELRNTT-LVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGN 224 (1023) Q Consensus 166 ~~~~VtLyVDC~~~~t~-~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~d 224 (1023) .+..++|+|||....+. ........ ++....+|||... ....|+|-|++|+|-.. T Consensus 101 ~~~~~~L~VD~~~~~~~~~~~~~~~~--l~~~~~l~iGG~~--~~~~F~GCi~~v~in~~ 156 (178) T 3bod_A 101 SGGNATLQVDSWPVIERYPAGRQLTI--FNSQATIIIGGKE--QGQPFQGQLSGLYYNGL 156 (178) T ss_dssp ETTEEEEEETTSCCEEECCCSCCCCC--BCCEEEEEESCCT--TSCBCCEEEEEEEETTE T ss_pred eCCEEEEEECCceeeeEecCCCcceE--ecCCCCEEEeCcc--CCCCCeEEEceEEECCe Confidence 99999999999875432 23322222 3445689998752 34679999999998544No 21>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Probab=98.49 E-value=3.7e-06 Score=87.57 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=89.6 Q ss_pred CceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCccee-EEEeeeccCCCCeeEEEEE Q FBpp0290330 86 YEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRK-LASFGVAHVPDKWNSIALQ 164 (1023) Q Consensus 86 ~eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~-~~sF~v~l~dg~WHrlaLs 164 (1023) .+|||.+|+|+.......||++.+......+|.|.+... .+.|............ .....+.+.+ +||||++. T Consensus 40 ~~fTvs~Wvk~~~~~~~~lfs~~~~~~~~~~~~l~~~~g-----~l~~~~~~~~~~~~~~~~~~~~~~~~~-~W~Hva~t 113 (191) T 2v73_A 40 EEGTIVTRFNMNDTSIQSLIGLSDGNKANNYFSLYVSGG-----KVGYELRRQEGNGDFNVHHSADVTFNR-GINTLALK 113 (191) T ss_dssp SSEEEEEEEEECCCSCEEEEEEECTTCSSCEEEEEECSS-----EEEEEEEECTTSSCEEEEEEEECCCCS-SCEEEEEE T ss_pred CCEEEEEEEEeCCCCceEEEEecCCCCcCcEEEEEEECC-----EEEEEEEecCCCcceeeecccccccCC-ceEEEEEE Confidence 499999999998755567999987644445677777632 4666665543321111 1112333334 99999999 Q ss_pred EeC-CeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc---CCCeeeeeeeeeEEecCcccc Q FBpp0290330 165 VLS-DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI---IGGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 165 V~~-~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~---~~~~F~G~LQ~l~i~~dp~~a 228 (1023) ..+ ..++||||-+++.+.........-.+ ....++||+.... ....|.|.|-+|+|+...... T Consensus 114 ~d~~~~~~lYvnG~~~~~~~~~~~~~~~~~-~~~~~~iG~~~~~~g~~~~~f~G~Idevri~~~aLs~ 180 (191) T 2v73_A 114 IEKGIGAKIFLNGSLVKTVSDPNIKFLNAI-NLNSGFIGKTDRANGYNEYLFRGNIDFMNIYDKPVSD 180 (191) T ss_dssp EETTTEEEEEETTEEEEEEECTTCCCGGGS-CCCEEEESSCCCCSSSCCCCCCEEEEEEEEESSCCCH T ss_pred EeCCCcEEEEECCEEeeeeccCCccccccc-CCceEEECCCCCCCCccCcCCceEEeEEEEECCcCCH Confidence 997 78999999999887655421000011 3457999986331 134699999999999876443No 22>4c1w_A Neuraminidase; sugar binding protein, carbohydrate-binding module, sialic A binding; HET: SLT; 1.84A {Streptococcus pneumoniae} PDB: 4c1x_A* Probab=98.49 E-value=1.4e-06 Score=89.52 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=88.5 Q ss_pred CceEEEEEEeecC--CCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCccee-EEEeeeccCCCCeeEEE Q FBpp0290330 86 YEFAILITFRQSS--LKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRK-LASFGVAHVPDKWNSIA 162 (1023) Q Consensus 86 ~eFSilaTlR~~~--~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~-~~sF~v~l~dg~WHrla 162 (1023) .+|||.+|+|+.. .....||++.+......+|.|.+.... ..|.+....+..... .+.-...+.+++||||+ T Consensus 33 ~~fTv~~Wvk~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~g~W~Hva 107 (188) T 4c1w_A 33 ENATVHMEFKPDAKAPAFYNLFSVSSATKKDEYFTMAVYNNT-----ATLEGRGSDGKQFYNNYNDAPLKVKPGQWNSVT 107 (188) T ss_dssp SSEEEEEEEEECSSCCSEEEEEEEECSSCTTCEEEEEEETTE-----EEEEEECTTCCBSSCCCTTCSCBCCTTSCEEEE T ss_pred CCeEEEEEEECCCCCCCccEEEEccCCcccCceEEEEEeCCc-----cEEEEEECCCCeEeccccccccccCCCCEEEEE Confidence 3999999999976 455679998875433456777776541 244444332221000 01113455689999999 Q ss_pred EEEeC-------CeEEEEEcCccceeeeccCCCceeeecCCceEEEEeccccC--CCeeeeeeeeeEEecCcccc Q FBpp0290330 163 LQVLS-------DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSII--GGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 163 LsV~~-------~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~--~~~F~G~LQ~l~i~~dp~~a 228 (1023) +.... ..++||||.+++.+........ ..+.....++||+..... ...|.|.|.+|+|+...... T Consensus 108 ~t~d~~~~~~~~~~~~lYvnG~~~~~~~~~~~~~-~~~~~~~~~~iG~~~~~g~~~~~f~G~idevriy~~aLs~ 181 (188) T 4c1w_A 108 FTVEKPTAELPKGRVRLYVNGVLSRTSLRSGNFI-KDMPDVTHVQIGATKRANNTVWGSNLQIRNLTVYNRALTP 181 (188) T ss_dssp EEEECCCSSSTTCEEEEEETTEEEEEECSCCCCG-GGCTTCCEEEEESEEETTEEECCCCEEEEEEEEESSCCCH T ss_pred EEEeCCcccCCCceEEEEECCEEeeeeeccCCcc-ccCCCCccEEECccccCCCcccccccEEeeEEEECCcCCH Confidence 99999 8999999999988742221111 112245689999863211 23599999999999876543No 23>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Probab=98.37 E-value=3.7e-06 Score=97.36 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=88.3 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe-eeccCCCCeeEEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQV 165 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV 165 (1023) .+.|.+.||.. ...++||.+.+......+|.|.|..- .|.|.|...... ..+.+ ...+.||+||+|.|.. T Consensus 250 ~~~isl~frT~-~~~GlLl~~~~~~~~~~~l~l~l~~G-----~l~~~~~~g~~~---~~~~~~~~~l~DG~WH~V~v~~ 320 (410) T 3asi_A 250 ADRLAIGFSTV-QKEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDD---IAIEESNAIINDGKYHVVRFTR 320 (410) T ss_dssp EEEEEEEEECC-CSEEEEEEEEECTTCCCEEEEEEETT-----EEEEEEESSSSC---EEEECCSCCCCSSSCEEEEEEE T ss_pred ccEEEEEEEec-CCCeEEEEEecCCCCCcEEEEEEeCC-----EEEEEEECCCCC---eEEccCCcCCCCCCeEEEEEEE Confidence 46777778754 45689998877533457888888754 467777543321 22333 5678899999999999 Q ss_pred eCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEeccccCCCeeeeeeeeeEEecCc Q FBpp0290330 166 LSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNP 225 (1023) Q Consensus 166 ~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp 225 (1023) .+..++|+|||....+........ ..++....+|||... ....|+|-||+|+|-..+ T Consensus 321 ~~~~~~L~VD~~~~~~~~~~~~~~-~~l~~~~~l~lGg~~--~~~~F~Gci~~v~in~~~ 377 (410) T 3asi_A 321 SGGNATLQVDSWPVIERYPAGRQL-TIFNSQATIIIGGKE--QGQPFQGQLSGLYYNGLK 377 (410) T ss_dssp ETTEEEEEETTSCCEEECCSSCCC-CCBCCEEEEEESSTT--TTCCCCEEEEEEEETTBC T ss_pred ECCEEEEEECCccceeecCCCccc-EEecCCceEEEcCCc--CCCCCEEEEEEEEECCHH Confidence 999999999998876543221111 123456789999652 457899999999996544No 24>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Probab=98.34 E-value=6.9e-06 Score=83.54 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=84.9 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1023) +|+|.+.||... .++.||...+. +...+|.|+|..- .|.|.|..... ...+.....+.|++||+|.|... T Consensus 27 ~~~isl~frT~~-~~GlLl~~~~~-~~~d~l~l~L~~G-----~l~~~~~~g~~---~~~~~~~~~v~DG~WH~V~v~~~ 96 (170) T 1d2s_A 27 KTSSSFEVRTWD-PEGVIFYGDTN-PKDDWFMLGLRDG-----RPEIQLHNHWA---QLTVGAGPRLDDGRWHQVEVKME 96 (170) T ss_dssp CCEEEEEEEESC-SSEEEEEEEEE-TTTEEEEEEEETT-----EEEEEEESSSC---EEEEECSCCCCSSSCEEEEEEEE T ss_pred CcEEEEEEEECC-CCEEEEEeCCC-CCCCEEEEEEECC-----EEEEEEECCCc---cEEeeCCCccCCCCCEEEEEEEe Confidence 788999999874 45788887764 3467888888654 47777754321 12222356788999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeecCCceEEEEeccc-------cCCCeeeeeeee-eEEecCc Q FBpp0290330 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEK-INVYGNP 225 (1023) Q Consensus 167 ~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~-l~i~~dp 225 (1023) +..++|+||.+...+... .+. + ....+|||-... .....|+|=|++ |+|-..+ T Consensus 97 ~~~~~L~VD~~~~~~~~~--~~g-~---~~~~lylGG~p~~~~~~~~~~~~~F~GCi~~~~~in~~~ 157 (170) T 1d2s_A 97 GDSVLLEVDGEEVLRLRQ--VSG-H---PIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQA 157 (170) T ss_dssp TTEEEEEETTEEEEEETT--CCC-C---CEEEEEESSCSSCGGGSSSCCCCCCCEEEEEEEESCGGG T ss_pred CCEEEEEECCeeeeeecc--CCC-C---cCCCEEECCccccccccccCCCCCeeEecccceecCCee Confidence 999999999987654321 111 1 246799987521 123569999999 7775544No 25>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Probab=98.25 E-value=1.6e-05 Score=83.47 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=85.6 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1023) +|+|.+.||... .++.||...+. +...+|.|+|..- .|.|.|..... ...+.-...+.|++||+|.|... T Consensus 39 ~~~is~~frT~~-~~GlLl~~~~~-~~~d~l~L~L~~G-----~l~~~~~~g~~---~~~~~s~~~vnDG~WH~V~l~~~ 108 (205) T 1f5f_A 39 KTSSSFEVRTWD-PEGVIFYGDTN-PKDDWFMLGLRDG-----RPEIQLHNHWA---QLTVGAGPRLDDGRWHQVEVKME 108 (205) T ss_dssp CCEEEEEEEESC-SSEEEEEEEEE-TTTEEEEEEEETT-----EEEEEEESSSC---EEEEECSCCCCSSSCEEEEEEEE T ss_pred CcEEEEEEEECC-CCEEEEEeCCC-CCCCEEEEEEeCC-----EEEEEEECCCc---eEEEecCCccCCCCCEEEEEEEe Confidence 899999999775 45788887764 3457888888754 46777754321 11222356778999999999999 Q ss_pred CCeEEEEEcCccceee-eccCCCceeeecCCceEEEEeccc-------cCCCeeeeeeee-eEEecCc Q FBpp0290330 167 SDKVSFYYDCELRNTT-LVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEK-INVYGNP 225 (1023) Q Consensus 167 ~~~VtLyVDC~~~~t~-~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~-l~i~~dp 225 (1023) +..++|+||.....+. ..... ..........||||-... .....|+|=|++ |+|-..+ T Consensus 109 ~~~~~L~VD~~~~~~~~~~~~~-~~~~~~~~~~lyvGG~p~~~~~~~~~~~~~F~GCi~~~v~in~~~ 175 (205) T 1f5f_A 109 GDSVLLEVDGEEVLRLRQVSGP-LTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQA 175 (205) T ss_dssp TTEEEEEETTEEEEEECSCCCC-C----CCEEEEEESSCSSCGGGSSSCCCCCCCEEEEEEECSCGGG T ss_pred CCEEEEEECCccceeeecccCc-cccCCCcCccEEECCccCcccccccCCCCCccEEecccEEECCeE Confidence 9999999999876542 12111 111112246899987521 123569999999 8876654No 26>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} SCOP: b.29.1.0 Probab=98.22 E-value=1.5e-05 Score=91.27 Aligned_cols=126 Identities=15% Similarity=0.289 Sum_probs=84.8 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe----eeccCCCCeeEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF----GVAHVPDKWNSIA 162 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF----~v~l~dg~WHrla 162 (1023) +|+|.++||.. ...+.||.+.+. ...+|.|.|... .|.|.|....+. ....+ ...+.|++||+|. T Consensus 221 ~~~isl~frT~-~~~GlLl~~~~~--~~d~l~l~L~~G-----~l~~~~~~g~g~---~~~~~~~~~~~~l~DG~WH~V~ 289 (383) T 2jd4_A 221 DLQITLEFRTT-SKNGVLLGISSA--KVDAIGLEIVDG-----KVLFHVNNGAGR---ITATYQPRAARALCDGKWHTLQ 289 (383) T ss_dssp CEEEEEEEEES-CSCEEEEEEECS--SSCEEEEEEETT-----EEEEEEESSSCE---EEEEECCSSTTGGGSSSCEEEE T ss_pred ceEEEEEEEeC-CCCEEEEEecCC--CCCEEEEEEECC-----EEEEEEECCCCc---EEEEEecCCCccccCCCcEEEE Confidence 89999999976 456799988763 346778887654 477777543221 22333 3567899999999 Q ss_pred EEEeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEeccc-------cCCCeeeeeeeeeEEecCc Q FBpp0290330 163 LQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEKINVYGNP 225 (1023) Q Consensus 163 LsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~l~i~~dp 225 (1023) |...+..++|+||+....+...... ...++....+|||-... .....|+|-|++|+|.-.+ T Consensus 290 v~~~~~~~~L~VD~~~~~~~~~~~~--~~~l~~~~~l~iGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~ 357 (383) T 2jd4_A 290 AHKSKHRIVLTVDGNSVRAESPHTH--STSADTNDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGS 357 (383) T ss_dssp EEEETTEEEEEETTEEEEEC----C--CCCBCCCEEEEESCCCTTSCCTTCSCCCBCEEEEEEEEEC--- T ss_pred EEEeCCEEEEEECCeeeccccCCcc--cccccCCCCEEEcCccCcccccccccCCCCceEeeeEEECCCC Confidence 9999999999999988665432111 11234567899987421 1235799999999996543No 27>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Probab=98.22 E-value=1.7e-05 Score=84.79 Aligned_cols=125 Identities=16% Similarity=0.158 Sum_probs=86.6 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEE-eeeccCCCCeeEEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS-FGVAHVPDKWNSIALQV 165 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~s-F~v~l~dg~WHrlaLsV 165 (1023) .+.|.+.||... .++.||.+.+......+|.|+|..- .|.|.|....+. ..+. ....+.|++||+|.|.. T Consensus 64 ~~~isl~FrT~~-~~GlLl~~~~~~~~~dfl~L~L~~G-----~l~~~~~~G~~~---~~l~~~~~~l~DG~WH~V~v~r 134 (226) T 2r1d_A 64 ADRLAIGFSTVQ-KEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDD---IAIEESNAIINDGKYHVVRFTR 134 (226) T ss_dssp EEEEEEEEECCC-SSEEEEEEEECTTCCCEEEEEEETT-----EEEEEEESSSCE---EEEECCSSCCCSSSCEEEEEEE T ss_pred cCEEEEEEEECC-CCeEEEEecCCCCCCCEEEEEEECC-----EEEEEEECCCCe---EEEecCCcCccCCCcEEEEEEE Confidence 678888888754 5578888877423456888888654 477777653321 1222 25677899999999999 Q ss_pred eCCeEEEEEcCcccee-eeccCCCceeeecCCceEEEEeccccCCCeeeeeeeeeEEecC Q FBpp0290330 166 LSDKVSFYYDCELRNT-TLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGN 224 (1023) Q Consensus 166 ~~~~VtLyVDC~~~~t-~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~d 224 (1023) .+..++|+||.....+ ......... ++....||||-.. ....|+|-|++|+|-.. T Consensus 135 ~~~~~~L~VD~~~~~~~~~~~~~~~~--l~~~~~l~lGG~p--~~~~F~GCi~~v~in~~ 190 (226) T 2r1d_A 135 SGGNATLQVDSWPVIERYPAGRQLTI--FNSQATIIIGGKE--QGQPFQGQLSGLYYNGL 190 (226) T ss_dssp ETTEEEEEETTSCCEEECCSSCCCCC--BCSEEEEEESSTT--TTCCCCEEEEEEEETTB T ss_pred cCCEEEEEECCeeeeeEecCCCcceE--EcCCCCEEEeccc--CCCCCEEEEeeEEECCE Confidence 9999999999987433 223222222 3445689998752 34679999999998654No 28>4qvs_A S-layer domain-containing protein; human microbiome, midwest center for structural genomics, MC biology; 2.10A {Ruminiclostridium thermocellum atcc 27ORGANISM_TAXID} Probab=98.20 E-value=2.1e-06 Score=90.02 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=98.0 Q ss_pred EEEccCCCCCcceEEcCC-CcCCCccccccCCCCCceEEEEEEeecCCCC---ceEEEEEcCCCCeEEEEEEEcccccCc Q FBpp0290330 53 IEFGEAEDGFPAFRFLQT-ADVKSPYRMLLPEKLYEFAILITFRQSSLKG---GYLFSVVNPLDTVVQLGVHLSPVVKNS 128 (1023) Q Consensus 53 V~~v~G~d~~pAyrf~~~-a~l~~pt~~~fP~~~~eFSilaTlR~~~~~~---g~LfsI~~~~~~~~qlgL~ls~~~k~~ 128 (1023) ++.+.|..+ .|++|... ..|..+.. ++ ....+|||.+|||+..... ..||+.-+ ...++-|..... T Consensus 38 ~~~~~g~~g-~al~f~G~~~~v~~~~~-~~-~~~~~fTi~~Wvk~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~---- 107 (227) T 4qvs_A 38 NGVVPGLNG-NSVSLDGVDDYVALPDG-IA-GTFYNFTIAFWVRLDTIGEQPIFDFFDSGS---NNKYMRLTAESD---- 107 (227) T ss_dssp SCEEECSSS-EEECCCSSSCEEECCTT-SS-TTCSSCCCCCCCCCSSCSSEEEEEEECTTC---SSCEEEEEECTT---- T ss_pred ceeccCCCC-cEEEecCcCCEEEcCcc-cc-cCCCCeEEEEEEEeCCCCCCcceeeEecCC---CCcEEEEEEcCC---- Confidence 455555443 68888665 33555532 11 1122999999999977654 34554322 223444433322 Q ss_pred eeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccC-CCceeeecCCceEEEEecccc Q FBpp0290330 129 YNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR-EPIELVFDSASTLYIGQAGSI 207 (1023) Q Consensus 129 ~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r-~~~~l~~~~~~~l~IGq~g~~ 207 (1023) ..+.|.+...+... ...+.-...+.+++||||++...+..++||||.+++.+..... .+..+ +.....++||..... T Consensus 108 g~l~~~~~~~~~~~-~~~~~~~~~~~~~~W~hva~t~d~~~~~lYvnG~~~~~~~~~~~~~~~~-~~~~~~~~iG~~~~~ 185 (227) T 4qvs_A 108 GKIKFAMTQSGYYG-EKTITSGSALTEGVWKHVAVTLSGDTGTLYINGENVGENNTLSLRPLTF-LGETSKGYIGKSHQT 185 (227) T ss_dssp SCEEEEEESSCGGG-CEEEECCCCCCTTCCCCEEEEEETTEEEEEETTEEEEEETTCCC-CCSS-SGGGCCCCSSCCCCC T ss_pred CcEEEEEeCCCCCc-ceEEecCCcccCCcEEEEEEEEeCCeEEEEECCEEeeeccCCCCCcccc-cCCCcceeecCCcCC Confidence 13556654332211 1122223556689999999999999999999999988764421 22222 123456888886431 Q ss_pred C-------CCeeeeeeeeeEEecCcccc Q FBpp0290330 208 I-------GGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 208 ~-------~~~F~G~LQ~l~i~~dp~~a 228 (1023) . ...|.|.|.+|+|+...... T Consensus 186 ~~~~~~~~~~~f~G~idevri~~~aLs~ 213 (227) T 4qvs_A 186 DSSEDPYYNSYLHGMIDDFRIFDRALSA 213 (227) T ss_dssp SCTTCSSTTCCCCSCCCCCCCCSSCCCH T ss_pred CccCCcccccccCcEeeEEEEEcccCCH Confidence 1 23799999999999876443No 29>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Probab=98.13 E-value=2.7e-05 Score=89.53 Aligned_cols=126 Identities=10% Similarity=0.233 Sum_probs=86.4 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe----eeccCCCCeeEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF----GVAHVPDKWNSIA 162 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF----~v~l~dg~WHrla 162 (1023) +|+|.+.||.... .+.||.+.+. ...+|.|.|... .|.|.|....+. ....+ ...+.||+||+|. T Consensus 233 ~~~is~~frT~~~-~GlLl~~~~~--~~~~l~l~L~~G-----~l~~~~~~g~g~---~~~~~~~~~~~~l~DG~WH~V~ 301 (394) T 1dyk_A 233 DLLVEFEFRTTRP-TGVLLGVSSQ--KMDGMGIEMIDE-----KLMFHVDNGAGR---FTAIYDAEIPGHMCNGQWHKVT 301 (394) T ss_dssp EEEEEEEEEESCS-CEEEEEEECS--SSCEEEEEEETT-----EEEEEEESSSCC---EEEEECCCSTTSTTSSSCEEEE T ss_pred ceEEEEEEEeCCC-CcEEEEeccC--CCCEEEEEEECC-----EEEEEEECCCCc---eEEEEecCCCCcCcCCCcEEEE Confidence 8899999997544 5789888753 346777777643 477777543222 22333 3567799999999 Q ss_pred EEEeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc-------CCCeeeeeeeeeEEecCc Q FBpp0290330 163 LQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------IGGKFEGYLEKINVYGNP 225 (1023) Q Consensus 163 LsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~~~~F~G~LQ~l~i~~dp 225 (1023) |...+..++|+||+........... ...++....+|||..... ....|+|-|++|+|...+ T Consensus 302 v~~~~~~~~L~VD~~~~~~~~~~~~--~~~~~~~~~l~iGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~ 369 (394) T 1dyk_A 302 AKKIKNRLELVVDGNQVDAQSPNSA--STSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGT 369 (394) T ss_dssp EEEETTEEEEEETTEEEEEECCCTT--CCCBCCCBCCEESCCCTTCCCTTCSCCCCCEEEEEEEEEECTT T ss_pred EEEeCCEEEEEECCcccccccCCcc--ccccccCCCEEECCCCCcccccCccccCCccccccEEEECCcc Confidence 9999999999999987655432111 222345678999874210 235699999999996543No 30>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3mw2_A* 3b3q_E* 3mw3_A* Probab=98.08 E-value=3.8e-05 Score=81.56 Aligned_cols=127 Identities=16% Similarity=0.177 Sum_probs=83.2 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe-eeccCCCCeeEEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQV 165 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV 165 (1023) .++|.+.||... ..+.||.+.+......+|.|+|..- .|.|.|....+. ..... ...+.|++||+|.|.. T Consensus 36 ~~~isl~frT~~-~~GlLl~~~~~~~~~d~l~l~L~~G-----~l~~~~~~G~~~---~~~~~~~~~l~DG~WH~V~v~r 106 (220) T 2r1b_A 36 ADRLAIGFSTVQ-KEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTDD---IAIEESNAIINDGKYHVVRFTR 106 (220) T ss_dssp EEEEEEEEECCC-SSEEEEEEEESTTCCCEEEEEEETT-----EEEEEEESSSSC---EEEECTTCCCCSSSCEEEEEEE T ss_pred CCEEEEEEEECC-CCeEEEEEcCCCCCCCEEEEEEeCC-----EEEEEEECCCCc---EEEecCCcCcCCCCCEEEEEEE Confidence 688888888764 4578888777422456788887543 477888653322 22333 4678899999999999 Q ss_pred eCCeEEEEEcCccceee-ec-cCCCcee---------------------------eecCCceEEEEeccccCCCeeeeee Q FBpp0290330 166 LSDKVSFYYDCELRNTT-LV-TREPIEL---------------------------VFDSASTLYIGQAGSIIGGKFEGYL 216 (1023) Q Consensus 166 ~~~~VtLyVDC~~~~t~-~l-~r~~~~l---------------------------~~~~~~~l~IGq~g~~~~~~F~G~L 216 (1023) .+..++|.||.....+. .. ......+ .++....+|||-.. ....|+|=| T Consensus 107 ~~~~~~L~VD~~~~~~~~~~g~~~~~~l~~~~~~~~~~~g~~~~~~~~d~~~~~~~~n~~~~l~iGG~p--~~~~F~GCi 184 (220) T 2r1b_A 107 SGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKE--QGQPFQGQL 184 (220) T ss_dssp ETTEEEEEETTSCCEEECC-----------------CHHHHHHHHHHHHHHHGGGSBCCEEEEEESSTT--TTCCCCEEE T ss_pred eCCEEEEEECCCcceeeccCCCCccceeeccccccceeecccccccccccccceeEecCcCcEEECCcc--CCCCCeEEE Confidence 99999999998764332 11 0000001 11223679998652 356799999 Q ss_pred eeeEEecC Q FBpp0290330 217 EKINVYGN 224 (1023) Q Consensus 217 Q~l~i~~d 224 (1023) ++|+|-.. T Consensus 185 ~~v~in~~ 192 (220) T 2r1b_A 185 SGLYYNGL 192 (220) T ss_dssp EEEEETTB T ss_pred CcEEECCE Confidence 99998544No 31>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* 4ra0_A* Probab=97.89 E-value=0.00025 Score=82.31 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=90.9 Q ss_pred cceEEcCCCcCCCccccccCCCCC-ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccC Q FBpp0290330 63 PAFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQN 141 (1023) Q Consensus 63 pAyrf~~~a~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~ 141 (1023) .||+|..... ....|+..-. .|+|.+.||... .+|.||...+. +...+|.|+|..- .|.|.|...+.. T Consensus 41 ~~~~F~g~~~----~~~~f~~~~~~~~~isl~frT~~-~~GlLl~~~~~-~~~d~~~L~L~~G-----~l~~~~~~g~~~ 109 (422) T 1h30_A 41 LGRMFSGTPV----IRLRFKRLQPTRLVAEFDFRTFD-PEGILLFAGGH-QDSTWIVLALRAG-----RLELQLRYNGVG 109 (422) T ss_dssp CCC-----CC----EEEECCBSSCCCCEEEEEEEECC-SSEEEEEEESC-TTSEEEEEEEETT-----EEEEEEEETTEE T ss_pred hcceECCcce----EEEEecCCCCCcEEEEEEEEeCC-CCeEEEEeCCC-CCCCEEEEEEECC-----EEEEEEECCCCc Confidence 4567765422 1222332223 889999999765 55788888775 4457889988765 477777654321 Q ss_pred cceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeec-CCceEEEEeccc-------cCCCeee Q FBpp0290330 142 IGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFD-SASTLYIGQAGS-------IIGGKFE 213 (1023) Q Consensus 142 ~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~-~~~~l~IGq~g~-------~~~~~F~ 213 (1023) .+..-...+.|++||+|.|...+..++|+||.....+.........+... -...+|||-... .....|. T Consensus 110 ---~~~~~~~~lnDg~WH~V~v~~~~~~~~l~vD~~~~~~~~~~g~~~~l~~~~~~~~lyvGG~p~~~~~~~~~~~~~F~ 186 (422) T 1h30_A 110 ---RVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLD 186 (422) T ss_dssp ---EEEEEEEECCSSCCEEEEEEECSSEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSSCGGGSSSCCCCCCC T ss_pred ---eEEeCCceecCCCCEEEEEEEcCCEEEEEECCcceEeeecCCcccccccCcccceEEEecccCcccccccccCCCCC Confidence 22223457789999999999999999999998765443333322233200 136799986421 1135699 Q ss_pred eeeeeeEEec Q FBpp0290330 214 GYLEKINVYG 223 (1023) Q Consensus 214 G~LQ~l~i~~ 223 (1023) |=|++|+|+- T Consensus 187 GCi~~l~~~n 196 (422) T 1h30_A 187 GCMRSWNWLN 196 (422) T ss_dssp EEEEEEEEC- T ss_pred EEeeeeEEcC Confidence 9999999633No 32>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Probab=97.88 E-value=0.00047 Score=80.87 Aligned_cols=165 Identities=10% Similarity=0.160 Sum_probs=97.6 Q ss_pred CcEEEccCCCCCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCCC-C------ceEEEEEcCCC-----C Q FBpp0290330 51 AGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLK-G------GYLFSVVNPLD-----T 113 (1023) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~-~------g~LfsI~~~~~-----~ 113 (1023) ..++++.|.. ..|+.|..... |..|.. ++...+. +|||.+|+|+.... . .-+++|.+..+ . T Consensus 47 G~vs~v~G~~-GkAl~fdG~~~S~~~V~lp~~-ll~~~~~~sFTISfWVK~~~~~t~~~~~y~~g~~~Ii~~~~~~w~~~ 124 (452) T 1a8d_A 47 PDAQLVPGIN-GKAIHLVNNESSEVIVHKAMD-IEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSI 124 (452) T ss_dssp TTCEEEECSS-SEEEEEESSTTCCEEEECCGG-GTTTTTTSCEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEECGGGC T ss_pred CCceecCCcc-cceEEEcCCCCceEEEecCch-hcccCCCCCEEEEEEEeccccCcccccccccCceEEEeccCcccccC Confidence 4577887765 47999976543 444433 3334455 99999999997653 1 11344443211 1 Q ss_pred eEEEEEEEcccccCceeEEEEEEecccCcceeEEEe-----eec-cCCCCeeEEEEEEe-CCeEEEEEcCccceeeeccC Q FBpp0290330 114 VVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-----GVA-HVPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTR 186 (1023) Q Consensus 114 ~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF-----~v~-l~dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r 186 (1023) ...+.|.+... .+.|.+....+.. +...| .++ +.+++||||++.+. ...++||||-+++.+..+.. T Consensus 125 ~~G~~i~l~~g-----~l~f~~~~~~G~~--~~i~~~~~~~~i~~v~~g~W~HVAvT~D~~~~~~lYVNG~lv~~~~~~~ 197 (452) T 1a8d_A 125 GSGWSVSLKGN-----NLIWTLKDSAGEV--RQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITG 197 (452) T ss_dssp EEEEEEEEETT-----EEEEEEECTTSCE--EEEEEECCSBTTSCSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECTT T ss_pred CCCcEEEEcCC-----eEEEEEEeCCCCc--ceeEeeccccccCcCCCCceEEEEEEEeCCCCEEEeECCEEeeeecccc Confidence 34455555432 3555554422221 12222 122 22799999999998 55679999999987765432 Q ss_pred CCceeeecCCceEEEEeccccCCCeeeeeeeeeEEecCcccc Q FBpp0290330 187 EPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 187 ~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1023) . ..+ .....+.|+.... ....|.|.|.+|||+..+..+ T Consensus 198 ~-~~i--~~~~~~~lgiG~~-~d~~f~G~IDEvRIynrALS~ 235 (452) T 1a8d_A 198 L-GAI--REDNNITLKLDRC-NNNNQYVSIDKFRIFCKALNP 235 (452) T ss_dssp C-CCC--CCCSEEEEEEESC-CCTTCEEEEEEEEEESSCCCH T ss_pred c-ccc--ccCCeEEEEEccC-CCCCCcEEEEEEEEECCcCCH Confidence 1 112 2234455554322 345699999999999987444No 33>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Probab=97.81 E-value=0.00027 Score=80.41 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=91.0 Q ss_pred CcceEEcCCCcCCCccccccCCCCCceEEEEEEeecCCC-CceEEEEEcCCCCeEEEEEEEcccccCc-eeEEEEEEecc Q FBpp0290330 62 FPAFRFLQTADVKSPYRMLLPEKLYEFAILITFRQSSLK-GGYLFSVVNPLDTVVQLGVHLSPVVKNS-YNVSLVYTQAD 139 (1023) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~~~eFSilaTlR~~~~~-~g~LfsI~~~~~~~~qlgL~ls~~~k~~-~~i~l~Y~~~~ 139 (1023) ..|++|.. ..+..+.... ....+|||.+|+|+.... ...||+. ++ .|.|++.....+- ..-.|.+... T Consensus 140 ~~al~f~G-~yi~v~~~~~--~~~~~fTi~~Wvk~~~~~~~~~i~g~----~g--~~~l~~~~~~~gi~~~~~l~~~g~- 209 (355) T 4dqa_A 140 TKAGNFSN-HYISVKFPVG--TFFSSFTYEALINVDYFLDNNTIMGT----EG--VMILRIGDAGGGITPKDYLEVAGG- 209 (355) T ss_dssp CEEEEEES-CCEEECCCTT--CCBSSEEEEEEEEESCCCSSEEEEEE----TT--TEEEEEEEGGGTSEEEEEEEEEES- T ss_pred ccccccCC-ceEEecCCCC--CCccCEEEEEEEEccccCCcceEEcC----CC--cEEEEecCCCcCcCcCCEEEEcCC- Confidence 56777765 4444442221 112299999999997654 3445542 22 2344443221000 1123333321 Q ss_pred cCcceeEEEeeeccCCCCeeEEEEEEe--CCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc--CCCeeeee Q FBpp0290330 140 QNIGRKLASFGVAHVPDKWNSIALQVL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--IGGKFEGY 215 (1023) Q Consensus 140 ~~~~q~~~sF~v~l~dg~WHrlaLsV~--~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--~~~~F~G~ 215 (1023) . .. .-...+.+++||||++... +..++||||.+++.+....... +.+.....++||+.... ....|.|. T Consensus 210 --~--~~-~s~~~~~~~~W~Hva~t~d~~~~~~~lYvnG~~~~~~~~~~~~--~~~~~~~~l~IG~~~~~~~~~~~f~G~ 282 (355) T 4dqa_A 210 --Q--NY-RVTKPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGIDG--FDPNSDMGFYIGRIYGFKWGERPFHGK 282 (355) T ss_dssp --S--CE-ECSSCCCSSCEEEEEEEEETTTTEEEEEETTEEEEEEECCCCC--BCTTSTTCEEESCCTTCTTCCCCCEEE T ss_pred --C--cc-ccCCccCCCCEEEEEEEEECCCCEEEEEECCEEEeEEEcCCCc--cccCCCceEEEcCCCCCCCCCccceEE Confidence 1 11 1133567899999999999 8999999999998876654322 22334568999986321 24689999 Q ss_pred eeeeEEecCcccc Q FBpp0290330 216 LEKINVYGNPDAI 228 (1023) Q Consensus 216 LQ~l~i~~dp~~a 228 (1023) |.+|||+...... T Consensus 283 idevri~~~aLs~ 295 (355) T 4dqa_A 283 MSEVRVWSVARTE 295 (355) T ss_dssp EEEEEEESSCCCH T ss_pred EEEEEEECCCCCH Confidence 9999999987544No 34>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} SCOP: b.29.1.0 Probab=97.79 E-value=0.00041 Score=79.34 Aligned_cols=126 Identities=16% Similarity=0.266 Sum_probs=84.6 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1023) +|+|.++||.... ++.||-..+. +...+|.|+|..- .|.|.|...++. ..++....+.|++||+|.|... T Consensus 44 ~~~is~~frT~~~-~GlLl~~~~~-~~~d~~~l~L~~G-----~l~~~~~~g~~~---~~~~~~~~v~Dg~WH~V~v~r~ 113 (383) T 2jd4_A 44 RLQVQLSIRTFAS-SGLIYYVAHQ-NQMDYATLQLQEG-----RLHFMFDLGKGR---TKVSHPALLSDGKWHTVKTEYI 113 (383) T ss_dssp EEEEEEEEEECCS-CEEEEEEECT-TSSSEEEEEEETT-----EEEEEEECSSCE---EEEECCCCCTTSSCEEEEEEEE T ss_pred ceEEEEEEEeCCC-CeEEEEeCCC-CCCcEEEEEEECC-----EEEEEEECCCCe---EEEeCCccccCCCCEEEEEEEE Confidence 8999999997654 4688777653 3356888888654 477777543321 2233355677999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc--------CCCeeeeeeeeeEEecC Q FBpp0290330 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--------IGGKFEGYLEKINVYGN 224 (1023) Q Consensus 167 ~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--------~~~~F~G~LQ~l~i~~d 224 (1023) +..++|+||-..............| +....+|||-.... ....|.|-|++|+|... T Consensus 114 ~~~~~L~vD~~~~~~~~~~~~~~~l--~~~~~l~iGG~p~~~~~~~~~~~~~~F~GCi~~l~in~~ 177 (383) T 2jd4_A 114 KRKAFMTVDGQESPSVTVVGKATTL--DVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNGQ 177 (383) T ss_dssp TTEEEEEETTEECCCEECCSSCCCC--CCCSEEEESSCCTTCCCCSSCSCCSBCCEEEEEEEETTE T ss_pred CCEEEEEEeCCccceeecCCCCcee--cCCCCEEEeCcCccccccccccccCCeeeEeeeEEECCE Confidence 9999999997655443322222233 33567999854210 12469999999998643No 35>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* 4foq_A 4fov_A* 4fow_A 4foy_A* 4fp2_A* 4fp3_A* 4fpc_A* 4fpe_A* 4fpf_A* 4fpg_A* 4fph_A* 4fpj_A* 4fpk_A* 4fpl_A* 4fpo_B* 4fpy_A* 4fq4_A* Probab=97.70 E-value=0.00036 Score=86.35 Aligned_cols=163 Identities=10% Similarity=0.068 Sum_probs=101.1 Q ss_pred CcceEEcCCCcCCCccccccCCCC--CceEEEEEEeecC-CCCceEEEEEcCCC--CeEEEEEEEcccccCceeEEEEEE Q FBpp0290330 62 FPAFRFLQTADVKSPYRMLLPEKL--YEFAILITFRQSS-LKGGYLFSVVNPLD--TVVQLGVHLSPVVKNSYNVSLVYT 136 (1023) Q Consensus 62 ~pAyrf~~~a~l~~pt~~~fP~~~--~eFSilaTlR~~~-~~~g~LfsI~~~~~--~~~qlgL~ls~~~k~~~~i~l~Y~ 136 (1023) ..|+.|.... +..+... -..+ .+|||.++||++. .+...||++.+... ...+|.|.+.... ++.|... T Consensus 34 g~a~~fdG~~-v~l~~~~--~~~l~~~~fTv~~Wvk~~~~~~~~~lfs~~~~~~~~~~~~~~l~~~~~g----~~~~~~~ 106 (686) T 2jkb_A 34 GGSYQLNNKS-IDISSLL--LDKLSGESQTVVMKFKADKPNSLQALFGLSNSKAGFKNNYFSIFMRDSG----EIGVEIR 106 (686) T ss_dssp EEEEEEESSC-EECHHHH--GGGCCSSCEEEEEEEECSSCCSEEEEEEEECCSTTCTTCEEEEEEETTS----CEEEEEE T ss_pred cceEEecCce-EECchhc--cccCCCCCeEEEEEEEeCCCCCCCEEEEecCCCCCCccccEEEEEeCCC----eEEEEEE Confidence 3688896543 4444433 2346 3999999999975 44556999886422 2356777776532 3666665 Q ss_pred ecccCcceeEEEeeec-----cCCCCeeEEEEEEeCC--eEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc-- Q FBpp0290330 137 QADQNIGRKLASFGVA-----HVPDKWNSIALQVLSD--KVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-- 207 (1023) Q Consensus 137 ~~~~~~~q~~~sF~v~-----l~dg~WHrlaLsV~~~--~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-- 207 (1023) ..+.... ..+..... ..+++||||++..... .++||||-+++.+.........-.+.....++||+.... T Consensus 107 ~~~~~~~-~~~~~~~~~~~~~~~~g~W~Hva~t~d~~~g~~~lYvnG~~~~~~~~~~~~~~~~~~~~~~~~IG~~~~~g~ 185 (686) T 2jkb_A 107 DAQKGIN-YLFSRPASLWGKHKGQAVENTLVFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNREGK 185 (686) T ss_dssp ETTTTEE-EEEEESSCCCCEETTEECCEEEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEETTE T ss_pred eCCCcee-EEeeccccccccccCCCCeEEEEEEEECCCCeEEEEECCEEEEeeccccceecccCCCCceEEECCeecCCC Confidence 4432211 11111111 1258999999999764 999999999988765533211011233458999984211 Q ss_pred CCCeeeeeeeeeEEecCcccccccC Q FBpp0290330 208 IGGKFEGYLEKINVYGNPDAINVTC 232 (1023) Q Consensus 208 ~~~~F~G~LQ~l~i~~dp~~a~~~C 232 (1023) ....|.|.|-+|+|+.......++. T Consensus 186 ~~~~f~G~Idev~i~~~aLs~~eI~ 210 (686) T 2jkb_A 186 EHYLAKGSIDEISLFNKAISDQEVS 210 (686) T ss_dssp EESCCEEEEEEEEEESSCCCHHHHH T ss_pred ccccccceEEEEEEecccCCHHHHH Confidence 1234999999999998876654443No 36>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease, ganglioside, metal-B toxin, protease, membrane, receptor, secreted; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 PDB: 2vua_A 4jra_A 3fuo_A 4iqp_A Probab=97.63 E-value=0.0016 Score=74.44 Aligned_cols=168 Identities=9% Similarity=0.152 Sum_probs=103.2 Q ss_pred CCcEEEccCCCCCcceEEcCCC----cCCCccccccCCCCC-ceEEEEEEeecCCCCce----EEEEEcCCCCeEEEEEE Q FBpp0290330 50 FAGIEFGEAEDGFPAFRFLQTA----DVKSPYRMLLPEKLY-EFAILITFRQSSLKGGY----LFSVVNPLDTVVQLGVH 120 (1023) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a----~l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~----LfsI~~~~~~~~qlgL~ 120 (1023) ...|+++.| . ..||.+.... .|..+ ..++-+.++ +|||.+|+|..+.+..+ .++|.+......-..|. T Consensus 48 ~G~v~~~~G-~-g~A~~L~~s~~s~~~v~~~-ndii~n~~~nnFSIsFWvr~~k~~~~~~~~~e~tIIn~k~~NsGW~Is 124 (444) T 2vu9_A 48 GSKVNFDPI-D-KNQIQLFNLESSKIEVILK-NAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVS 124 (444) T ss_dssp CTTEEECSS-C-TTCEEEESSTTCCEEEECC-GGGSCEESSCCEEEEEEEECCCCCSGGGTTCCEEEEEEEETTEEEEEE T ss_pred CCceEEEec-C-CcEEEeccCCCceEEEecC-chhhhccccCceEEEEEEECCCCCcccccCCceEeEeeccCCCCeEEE Confidence 456889988 4 4589995554 23333 344556677 99999999976655522 44444332223334444 Q ss_pred EcccccCceeEEEEEEecccCcceeEEEee----eccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCceeee Q FBpp0290330 121 LSPVVKNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIELVF 193 (1023) Q Consensus 121 ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~~~~l~~ 193 (1023) +... .+.+-..+. ....+...|. ..+. .++||+|+|+|. -...++|+|.+++.+..+.-.. .+. T Consensus 125 l~~n-----~liwtl~ds--ngn~k~i~f~y~~~~~I~dyinkW~hVtIt~Drlg~a~IYING~lv~~k~I~~lg-~I~- 195 (444) T 2vu9_A 125 LNYG-----EIIWTLQDT--QEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLG-NIH- 195 (444) T ss_dssp EETT-----EEEEEEECT--TSCEEEEEEECCSBSSSCSSTTSCEEEEEEECTTSEEEEEETTEEEEEEECTTCC-CEE- T ss_pred ECCC-----eEEEEEEec--CCceeeEEEecccccccccccCceEEEEEEECCCCCEEEEECCEEeeecchhhcc-cee- Confidence 4443 233433332 2233455553 2222 399999999999 5678999999999988665431 332 Q ss_pred cCCceEEEEeccccCCCeeeeeeeeeEEecCccccccc Q FBpp0290330 194 DSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINVT 231 (1023) Q Consensus 194 ~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~~ 231 (1023) .+..+-++-.+ .....+.+.|.+|+|+..+-...+. T Consensus 196 -~sn~i~l~v~~-~~d~~~~~~ID~f~Ifnk~Lt~~EI 231 (444) T 2vu9_A 196 -ASNNIMFKLDG-CRDTHRYIWIKYFNLFDKELNEKEI 231 (444) T ss_dssp -CCSEEEEEEES-CCCTTCEEEEEEEEEESSCCCHHHH T ss_pred -eCCeEEEEecc-cCCCccceeeeeeEEecccCCHHHH Confidence 23344444432 2456789999999999988555433No 37>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Probab=97.62 E-value=0.00068 Score=77.86 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=84.4 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1023) +|+|.++||... .++.||-..+. +...+|.|+|..- .|.|.|....+. ..+.....+.|++||+|.|... T Consensus 58 ~~~is~~frT~~-~~GlLl~~~~~-~~~d~~~l~l~~G-----~l~~~~~~g~g~---~~~~~~~~~nDg~WH~V~v~~~ 127 (394) T 1dyk_A 58 RLTIELEVRTEA-ESGLLFYMARI-NHADFATVQLRNG-----FPYFSYDLGSGD---TSTMIPTKINDGQWHKIKIVRV 127 (394) T ss_dssp EEEEEEEEEECC-SCEEEEEEECT-TSSSEEEEEEETT-----EEEEEEESSSCE---EEEECCSCCCSSSCEEEEEEEE T ss_pred ceEEEEEEEECC-CCeEEEEeCCC-CCCCeEEEEEECC-----EEEEEEECCCCc---EEEEecceecCCCeEEEEEEEe Confidence 789999999764 45788776653 3456888888654 477777543221 2233355677999999999999 Q ss_pred CCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc--------CCCeeeeeeeeeEEecCc Q FBpp0290330 167 SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI--------IGGKFEGYLEKINVYGNP 225 (1023) Q Consensus 167 ~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~--------~~~~F~G~LQ~l~i~~dp 225 (1023) +..++|+||-....... ......| +....+|||-.... ....|.|-|++|+|...+ T Consensus 128 ~~~~~L~vD~~~~~~~~-~~~~~~l--~~~~~l~lGG~p~~~~~~~~~~~~~~F~GCi~~l~in~~~ 191 (394) T 1dyk_A 128 KQEGILYVDDASSQTIS-PKKADIL--DVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQAP 191 (394) T ss_dssp TTEEEEEETTEEEEEEC-STTCCCC--CCCSEEEESSCCTTCCCCSSCSCCSBCSEEEEEEEESSSC T ss_pred CCEEEEEECCcccccCc-CCCCccc--cCCCceEEcccCCcccccccccCCCCceEEeeEEEECCEE Confidence 99999999977544332 1111223 34578999864210 123599999999986544No 38>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Probab=97.50 E-value=0.00078 Score=82.06 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=79.8 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEE--EeeeccCCCCeeEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLA--SFGVAHVPDKWNSIALQ 164 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~--sF~v~l~dg~WHrlaLs 164 (1023) ++.|.+.||.. ...|.||.+.+. ...+|.|.|..- .|.|.|....+.. ..++ .....+.||+||+|.|. T Consensus 408 ~~~i~~~FRT~-~~~GlLl~~~~~--~~~~l~l~L~~G-----~l~~~~~~g~~~~-~~~~~~~~~~~l~DG~WH~V~l~ 478 (608) T 2wjs_A 408 GTEINLSFSTR-NESGIILLGSGG--GQAYYAIFLNKG-----RLEVHLSSGTRTM-RKIVIKPEPNRFHDGREHSVHVE 478 (608) T ss_dssp TEEEEEEEEES-CSSEEEEEEC-----CCEEEEEEETT-----EEEEEEEC----C-EEEEECCCSSCSSSSSCEEEEEE T ss_pred CcEEEEEEEeC-CCceEEEEEcCC--CCCEEEEEEECC-----EEEEEEECCCCce-eeEEEecCCcccCCCCEEEEEEE Confidence 77888888765 456788876653 245777777653 4677775432221 1122 22567889999999999 Q ss_pred EeCCeEEEEEcCccceeeeccCCCceeeecCCceEEEEecccc-------CCCeeeeeeeeeEEec Q FBpp0290330 165 VLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI-------IGGKFEGYLEKINVYG 223 (1023) Q Consensus 165 V~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~-------~~~~F~G~LQ~l~i~~ 223 (1023) ..+..++|+||.....+..+... ..+++ ..+|||-.... ....|+|=||+|+|-. T Consensus 479 ~~~~~~~L~VD~~~~~~~~~~~~-~~l~~---~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in~ 540 (608) T 2wjs_A 479 RTRGIFTVQIDEDRRHMQNLTEE-QPIEV---KKLFVGGAPPEFQPSPLRNIPAFQGCVWNLVINS 540 (608) T ss_dssp ECSSEEEEEESSSCCEEEECCCC-SCBCC---SCEEESCCCC--------CCCCCCEEEEEEEETT T ss_pred EeCCEEEEEECCCcceeeccCCC-ccccc---ccEEEeCCCccccccccccCCCCEEEcCeeEECC Confidence 99999999999987655443322 23322 36999864211 1246999999999954No 39>3vuo_A NTNHA; protection of botulinum neurotoxin, botulinum neurotoxin, to; 3.90A {Clostridium botulinum} Probab=97.49 E-value=0.0018 Score=81.49 Aligned_cols=155 Identities=12% Similarity=0.186 Sum_probs=92.3 Q ss_pred CcEEEccCCCCCcceEEcCCCc-CCCccccccCCCCC-ceEEEEEEeec-CCC-CceEEEEEcCCCCeEEEEEEEccccc Q FBpp0290330 51 AGIEFGEAEDGFPAFRFLQTAD-VKSPYRMLLPEKLY-EFAILITFRQS-SLK-GGYLFSVVNPLDTVVQLGVHLSPVVK 126 (1023) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~-l~~pt~~~fP~~~~-eFSilaTlR~~-~~~-~g~LfsI~~~~~~~~qlgL~ls~~~k 126 (1023) .+++++.|..+ .|+.|..... |..|... +...+. +|||.+|+|+. ... ...+|+-.+. ...+.|.+... T Consensus 864 G~~sfv~Gv~G-kAL~FDGSd~yV~LPn~l-i~nslt~sFTVSFWVKplg~~T~~t~IIsskdn---nsGw~LsL~~n-- 936 (1196) T 3vuo_A 864 ESVELVYGVNG-ESLYLKSPNETVEFSNNF-FTNGLTNNFTICFWLRFTGKDDDKTRLIGNKVN---NCGWEIYFEDN-- 936 (1196) T ss_dssp TTCEEEECSSS-EEEEECSSSCCEEEECGG-GGCCSSCCEEEEEEEEECCCCSSCEEEEEEECS---SCEEEEEEETT-- T ss_pred CCceecCCCcC-ceeEEcCCCceEEeCCcc-cccCCCCcEEEEEEEccCCCCCccceEEEecCC---CCCcEEEEcCC-- Confidence 45677766544 5899976544 4444322 222344 89999999994 222 1225533321 22234444332 Q ss_pred CceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe--CCeEEEEEcCccceeeeccCCCceeeecCCceEE-EEe Q FBpp0290330 127 NSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLY-IGQ 203 (1023) Q Consensus 127 ~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~--~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~-IGq 203 (1023) .+.|...+..+. .+...+. .+..++||||++.+. +..++||||.+++.+..+.... .+ ..+..+. +|. T Consensus 937 ---tL~Fsi~Ds~Gn--eqsI~~d-dI~~GkW~HVAVTyDr~G~aLKLYVNGeLVaS~sisgL~-dI--~ssg~IsFIG~ 1007 (1196) T 3vuo_A 937 ---GLVFEIIDSNGN--QESVYLS-NVINNNWYYISISVDRLKDQLLIFINDKNVANVSIEQIL-NI--YSTNVISLVNK 1007 (1196) T ss_dssp ---EEEEEEECTTCC--EEEEEEC-SCTTSCCEEEEEEEETTTTEEEEEETTEEEEEEECTTCC-CC--CCCSEEEECCC T ss_pred ---cEEEEEEeCCCc--ceeeecC-CCCCCCEEEEEEEEECCCCEEEEeECCEEccccccccCc-cc--ccCCceeEecC Confidence 355555543322 2333443 456799999999998 6677999999998887554322 22 1223333 443 Q ss_pred ccccCCCeeeeeeeeeEEecCcccc Q FBpp0290330 204 AGSIIGGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 204 ~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1023) . |.|.|.+|||+..+..+ T Consensus 1008 n-------FnG~IDEVRIYNRALSa 1025 (1196) T 3vuo_A 1008 N-------NSIYVEELSVLDKPVAS 1025 (1196) T ss_dssp S-------SCEEEEEEEEESSCCCH T ss_pred C-------CcEEeeEEEEECCCCCH Confidence 2 89999999999987433No 40>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics center for infectious disease, ssgcid, botulinum neurotoxin; 1.56A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 4f83_A* 3ogg_A 3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A Probab=97.43 E-value=0.0022 Score=73.06 Aligned_cols=167 Identities=14% Similarity=0.195 Sum_probs=101.3 Q ss_pred CcEEEccCCCCCcceEEcCCCc---CCCccccccCCCCC-ceEEEEEEeecCCCC--ceEEEEEcCCCCeEEEEEEEccc Q FBpp0290330 51 AGIEFGEAEDGFPAFRFLQTAD---VKSPYRMLLPEKLY-EFAILITFRQSSLKG--GYLFSVVNPLDTVVQLGVHLSPV 124 (1023) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~---l~~pt~~~fP~~~~-eFSilaTlR~~~~~~--g~LfsI~~~~~~~~qlgL~ls~~ 124 (1023) ..|+++.| ...||.|..... |.++ ..++-+.++ +|||.+|+|..+.+. -..++|.+......-..|.+... T Consensus 31 G~v~~~~G--~g~A~~L~gs~~~~~i~~~-ndii~n~~~nsFSIsFWvr~~k~~t~~~~~~tIin~k~~nsGW~Isl~~n 107 (420) T 3pme_A 31 GDVQVNTI--YTNDFKLSSSGDKIIVNLN-NNILYSAIYENSSVSFWIKISKDLTNSHNEYTIINSIKQNSGWKLCIRNG 107 (420) T ss_dssp SCCEESSS--STTEEEECSTTCEEEEECC-GGGGSSGGGTEEEEEEEEEECHHHHTCCSEEEEEEEEETTEEEEEEEETT T ss_pred CceEEEec--CCcEEEecCCCccEEEecC-cchhhccccCceEEEEEEECCCccccCCCceEeEeeccCCCCeEEEECCC Confidence 55788888 468899977665 4433 334456677 999999999744411 12333333222223344444433 Q ss_pred ccCceeEEEEEEecccCcceeEEEeee----ccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCceeeecCCc Q FBpp0290330 125 VKNSYNVSLVYTQADQNIGRKLASFGV----AHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIELVFDSAS 197 (1023) Q Consensus 125 ~k~~~~i~l~Y~~~~~~~~q~~~sF~v----~l~--dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~ 197 (1023) .+.+-.. +.....+...|.. .+. .++||+|+++|. -..+++|+|.+++.+..+.-. .. +..+. T Consensus 108 -----~liw~l~--dsngn~~~i~f~y~~~~~I~d~~nkW~~VtIs~Drlg~~~IYING~lv~sk~I~~l-g~--I~~sn 177 (420) T 3pme_A 108 -----NIEWILQ--DINRKYKSLIFDYSESLSHTGYTNKWFFVTITNNIMGYMKLYINGELKQSERIEDL-DE--VKLDK 177 (420) T ss_dssp -----EEEEEEE--CTTSCEEEEEEECSTTTCTTSCTTSCEEEEEEEETTSEEEEEETTEEEEEEECTTS-CC--CCCCS T ss_pred -----eEEEEEE--ecCCceeeEEEecccccccccccCceEEEEEEECCCCCEEEEECCEEeeecchhhc-cc--cccCC Confidence 2333333 3223334555532 222 389999999999 577899999999998866442 12 22334 Q ss_pred eEEEEeccccCCCeeeeeeeeeEEecCccccccc Q FBpp0290330 198 TLYIGQAGSIIGGKFEGYLEKINVYGNPDAINVT 231 (1023) Q Consensus 198 ~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~~ 231 (1023) .+-++-.+ .....+.+.|.+|+|+..+-...+. T Consensus 178 ~i~l~v~~-~~d~~~~~~Id~f~Ifnk~Lt~~EI 210 (420) T 3pme_A 178 TIVFGIDE-NIDENQMLWIRDFNIFSKELSNEDI 210 (420) T ss_dssp EEEESCCS-CCCTTCCEEEEEEEEESSCCCHHHH T ss_pred eEEEEEcc-cCCCccceeeeeEEEecccCCHHHH Confidence 55555432 2446688999999999988555433No 41>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Probab=97.41 E-value=0.0016 Score=75.39 Aligned_cols=123 Identities=18% Similarity=0.306 Sum_probs=80.5 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEE--eeeccCCCCeeEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS--FGVAHVPDKWNSIALQ 164 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~s--F~v~l~dg~WHrlaLs 164 (1023) +|+|.+.||.... ++.||-..+ +...+|.|+|..- .|.|.|....+. ..+. -...+.|++||+|.|. T Consensus 27 ~~~is~~frT~~~-~GlLl~~~~--~~~df~~l~L~~G-----~l~~~~~~G~g~---~~~~~~s~~~vnDg~WH~V~v~ 95 (410) T 3asi_A 27 SMHLFFQFKTTSL-DGLILYNSG--DGNDFIVVELVKG-----YLHYVFDLGNGA---NLIKGSSNKPLNDNQWHNVMIS 95 (410) T ss_dssp CEEEEEEEECSCS-CEEEEEEEB--STTCEEEEEEETT-----EEEEEEESSSCE---EEEECCCSSCSCSSSCEEEEEE T ss_pred eEEEEEEEEECCC-CEEEEEeCC--CCCCeEEEEEECC-----EEEEEEECCCCc---EEEEecCCCccCCCCCEEEEEE Confidence 7899999997654 467765443 3456788888654 477777533221 1222 2457789999999999 Q ss_pred EeCCe-EEEEEcCccceeeeccCCCceeeecCCceEEEEecccc----------CCCeeeeeeeeeEEecC Q FBpp0290330 165 VLSDK-VSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSI----------IGGKFEGYLEKINVYGN 224 (1023) Q Consensus 165 V~~~~-VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~----------~~~~F~G~LQ~l~i~~d 224 (1023) ....+ ++|+||........- ....| +....+|||-.... ....|+|=|++|+|... T Consensus 96 ~~~~~~~~L~vD~~~~~~~~~--~~~~l--~~~~~lyvGG~p~~~~~~~~~~~~~~~~F~GCi~~v~in~~ 162 (410) T 3asi_A 96 RDTSNLHTVKIDTKITTQITA--GARNL--DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGR 162 (410) T ss_dssp ECTTCEEEEEETTEEEEEECT--TCCCC--CBCSCEEESCCCGGGGGGSCTTCCCSSBCCEEEEEEESSSC T ss_pred EcCCccEEEEECCccceecCC--Cceee--ccCCCeEEcccccchhcccccccccccCcceEeeeeEECCe Confidence 99876 689999876533221 11223 33567999865221 13469999999988654No 42>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Probab=97.39 E-value=0.0024 Score=80.23 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=91.7 Q ss_pred CcEEEccCCCCCcceEEcCCCc-CCCccccccCCCCC-ceEEEEEEeec-CCCCc-eEEEEEcCCCCeEEEEEEEccccc Q FBpp0290330 51 AGIEFGEAEDGFPAFRFLQTAD-VKSPYRMLLPEKLY-EFAILITFRQS-SLKGG-YLFSVVNPLDTVVQLGVHLSPVVK 126 (1023) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~-l~~pt~~~fP~~~~-eFSilaTlR~~-~~~~g-~LfsI~~~~~~~~qlgL~ls~~~k 126 (1023) .+++++.|..+ .|+.|..... |..|...++ +.+. +|||.+|+|+. ..+.+ .+|+-.+... . +.|.+... T Consensus 867 G~~sfvdGv~G-kAL~FDGSs~yV~LPn~li~-nS~tdsFTVSFWVK~lge~Ta~ttIISs~dnns-G--WeIsL~nn-- 939 (1196) T 3v0a_B 867 KDIGLVYGINS-DALYLNGSNQSISFSNDFFE-NGLTNSFSIYFWLRNLGKDTIKSKLIGSKEDNC-G--WEIYFQDT-- 939 (1196) T ss_dssp TTCEEEECSSS-EEEEECSSSCCEEEECGGGG-CCSSCCEEEEEEEEECCCCCSCEEEEEEEETTE-E--EEEEEETT-- T ss_pred CCceecCCCcC-ceEEEcCCccEEECCCcccc-cCCCCcEEEEEEeccCCccCccceEEecCCCCC-C--ceEEEcCC-- Confidence 35778777555 5899977544 444443332 2334 89999999994 22211 2553333211 1 23334332 Q ss_pred CceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe--CCeEEEEEcCccceeeeccCCCceeeecCCceEE-EEe Q FBpp0290330 127 NSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLY-IGQ 203 (1023) Q Consensus 127 ~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~--~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~-IGq 203 (1023) .+.+...+..+. .+...|. .+..++||||++.+. +..++||||.+++.+..+.... . +..+..+. +|. T Consensus 940 ---~L~Ws~~DsnGn--~ksI~~D-dI~~GkW~HVAITyDrsG~aVKLYINGeLVas~sisgll-d--I~ssg~IsFIG~ 1010 (1196) T 3v0a_B 940 ---GLVFNMIDSNGN--EKNIYLS-DVSNNSWHYITISVDRLKEQLLIFIDDNLVANESIKEIL-N--IYSSNIISLLSE 1010 (1196) T ss_dssp ---EEEEEEECTTCC--EEEEEEC-SCCSSSCEEEEEEEETTTTEEEEEETTEEEEEEECTTCC-C--CCCCSEEEECCT T ss_pred ---ceEEEEEeCCCc--cceeecc-CCCCCCeEEEEEEEeCCCCEEEEeECCEEccccccccCc-c--cccCCceeEecc Confidence 344444433322 1333443 456899999999998 5567999999998876544322 2 22233443 332 Q ss_pred ccccCCCeeeeeeeeeEEecCcccc Q FBpp0290330 204 AGSIIGGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 204 ~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1023) . |.|.|-+|||+..+..+ T Consensus 1011 n-------FnG~IDEVRIYNRALSa 1028 (1196) T 3v0a_B 1011 N-------NPSYIEGLTILNKPTTS 1028 (1196) T ss_dssp T-------CCEEEEEEEEESSCCCH T ss_pred c-------CCcEeeeEEEECCcCCH Confidence 1 99999999999886444No 43>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* 4ra0_A* Probab=97.37 E-value=0.00088 Score=77.77 Aligned_cols=128 Identities=15% Similarity=0.218 Sum_probs=81.1 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccc-cCcee---EEEEEEecccCcceeEEEeeeccCCCCeeEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVV-KNSYN---VSLVYTQADQNIGRKLASFGVAHVPDKWNSIA 162 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~-k~~~~---i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrla 162 (1023) +|+|.+.||... ..|.||.+.+..+...+|.|.|..-. ..+.+ |.|.+. .+ .+......+.||+||+|. T Consensus 250 ~~~is~~frT~~-~~GlLl~~~~~~~~~d~l~l~L~~g~~~g~l~~~~v~~~~~--~~----~~~~~~~~l~DG~WH~V~ 322 (422) T 1h30_A 250 EVEVVAHIRPAA-DTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVE--HT----ALALMEIKVCDGQEHVVT 322 (422) T ss_dssp CEEEEEEEEESS-SCEEEEEEEEGGGTEEEEEEEEESCC-----CCCEEEEEET--TE----EEEEEECCTTSSCCEEEE T ss_pred eeEEEEEEEeCC-CCEEEEEEeccCCCcCceEEEEeeccccccccccEEEEEEC--Ce----EEEEeeeeecCCCEEEEE Confidence 899999999774 45799988864344668888775320 00112 555552 21 122335777899999999 Q ss_pred EEEeCCeEEEEEcCccceeeeccCCCc-e-----eeecCCceEEEEecccc------CCCeeeeeeeeeEEe Q FBpp0290330 163 LQVLSDKVSFYYDCELRNTTLVTREPI-E-----LVFDSASTLYIGQAGSI------IGGKFEGYLEKINVY 222 (1023) Q Consensus 163 LsV~~~~VtLyVDC~~~~t~~l~r~~~-~-----l~~~~~~~l~IGq~g~~------~~~~F~G~LQ~l~i~ 222 (1023) |.+....++|+||.....+........ . ..++....+|||-.... ....|+|=|+ |+|- T Consensus 323 l~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~l~~~l~~~~~lylGG~p~~~~~~~~~~~~F~GCi~-v~in 393 (422) T 1h30_A 323 VSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPVTSAPVTAFYRGCMT-LEVN 393 (422) T ss_dssp EEEETTEEEEEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCCCSCCTTSSSCCSBCCEEEE-EEET T ss_pred EEEECCEEEEEeCCccceeeccccchhhhhhhhhHhhccCccEEEcCcCCCcccccccCCCceEEEE-EEEC Confidence 999999999999998765432211000 0 12445678999865211 2246999995 7663No 44>3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 3azw_A 3azv_A 4isr_A 4isq_A 3n7m_A 4fvv_A* 3n7k_A 3r4s_A* 3r4u_A Probab=97.34 E-value=0.0014 Score=76.15 Aligned_cols=165 Identities=13% Similarity=0.194 Sum_probs=92.0 Q ss_pred CcEEEccCCCCCcceEEcCCCc------CCCccccccCCCCC-ceEEEEEEeecC-C---CCceEEEEEcCCCCeEEEEE Q FBpp0290330 51 AGIEFGEAEDGFPAFRFLQTAD------VKSPYRMLLPEKLY-EFAILITFRQSS-L---KGGYLFSVVNPLDTVVQLGV 119 (1023) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~------l~~pt~~~fP~~~~-eFSilaTlR~~~-~---~~g~LfsI~~~~~~~~qlgL 119 (1023) ..|+++.| ...|+.|..... |..|...+ -+.+. +|||.+|+|+.. . ....||+..+. . .-+.+ T Consensus 32 g~v~~~~G--~g~Al~l~g~~~~~s~v~V~lPn~li-~n~~~~~FTVSfWVK~~~~~t~~~~~~If~~~~~-~--sGW~I 105 (424) T 3n7l_A 32 GNVQLNPI--FPFDFKLGSSGDDRGKVIVTQNENIV-YNAMYESFSISFWIRINKWVSNLPGYTIIDSVKN-N--SGWSI 105 (424) T ss_dssp SBCEECSS--TTCCEEEESCSTTBCEEEEECCHHHH-HTTTTTEEEEEEEEEEETCCTTCCCEEEEEEESS-S--CEEEE T ss_pred CceEEecC--CCcEEEEccCCCccceEEEECChHHh-cccCCCcEEEEEEeccccccCCCCccEEEeccCC-C--CCeEE Confidence 45888888 456999865432 34443322 23345 899999999866 2 23456666542 2 22334 Q ss_pred EEcccccCceeEEEEEEecccCcceeEEEee------eccCCCCeeEEEEEEe-CCeEEEEEcCccceeeeccCC----- Q FBpp0290330 120 HLSPVVKNSYNVSLVYTQADQNIGRKLASFG------VAHVPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTRE----- 187 (1023) Q Consensus 120 ~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~------v~l~dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~----- 187 (1023) .+... .+.+...+..+. .+...|. +.+. ++||||++.+. ...+++|||-+++.+..+... T Consensus 106 ~l~~n-----~l~ws~~d~~G~--~~~iwfdy~~~~~~~l~-n~W~HVAvTyD~~g~~kiYINGelv~s~~i~~~~~i~~ 177 (424) T 3n7l_A 106 GIISN-----FLVFTLKQNENS--EQDINFSYDISKNAAGY-NKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINF 177 (424) T ss_dssp EEETT-----EEEEEEEEETTE--EEEEEEECCGGGCTTCC-CSCEEEEEEEETTSEEEEEETTEEEEEEECCCCTTCCC T ss_pred EeCCC-----ceEEEEecCCCc--cceeeecccccccCCCC-CceEEEEEEECCCCCEEEEECCEEeeeeeecccccccc Confidence 34322 334443332221 1222232 3444 99999999999 778899999998877543211 Q ss_pred CceeeecCCceEEEEeccccCCCeeeeeeeeeEEecCcccccc Q FBpp0290330 188 PIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1023) Q Consensus 188 ~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1023) ...+.+.....+.||+.-. .+..|.|.|.+|||+..+..+++ T Consensus 178 ~~~i~~~~g~~~~iG~~~~-~d~~f~G~IDE~RIynrALTaeE 219 (424) T 3n7l_A 178 SKTITFQMNKIPNTGLITS-DSDNINMWIRDFYIFAKELDDKD 219 (424) T ss_dssp CSEEEEEEEECTTSCCCC-----CCEEEEEEEEEESSCCCHHH T ss_pred CceeeeccCcceeeccccc-CCCCCcEEEeEEEEECCcCCHHH Confidence 1111111111122333210 14568999999999998755533No 45>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 3fuq_A Probab=97.29 E-value=0.018 Score=65.30 Aligned_cols=164 Identities=8% Similarity=0.102 Sum_probs=102.7 Q ss_pred CCcEEEccCCCCCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCC-C------CceEEEEEcCCCCeEEE Q FBpp0290330 50 FAGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSL-K------GGYLFSVVNPLDTVVQL 117 (1023) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~-~------~g~LfsI~~~~~~~~ql 117 (1023) ...|.++.| -.-|+.|..... |.++. .++-+.++ +|||.+|+|-... + .-.||.-.+. +. .-. T Consensus 29 ~g~v~lv~g--~~~a~~L~~s~~s~i~I~~~n-dii~n~~~~nFSIsFWvri~k~~t~~n~~~e~tII~~~~~-nN-sGW 103 (413) T 3rsj_A 29 NGDVYIYST--NRNQFGIYSSKPSEVNIAQNN-DIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTIIDCIRN-NN-SGW 103 (413) T ss_dssp EECCEECSS--CTTEEEEESSSSEEEEEECCT-TTCCCCSSCCEEEEEEEECCCCCSGGGTTCCEEEEEEEET-TT-EEE T ss_pred CCceEEEec--CCcEEEEccCCCcceEEecCc-ceeeccccCcEEEEEEEEcCCcccccccCCcceEEEeeec-CC-CCc Confidence 356788888 356777766544 44443 44445677 9999999997444 2 2458876643 22 222 Q ss_pred EEEEcccccCceeEEEEEEecccCcceeEEEeee----ccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCce Q FBpp0290330 118 GVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGV----AHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIE 190 (1023) Q Consensus 118 gL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v----~l~--dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~~~~ 190 (1023) .|.+... .|.+-..+.. ..++.+-|.. .+. -++||+|+++|. -....+|||.+++....+.-.. T Consensus 104 ~Isl~~n-----~liWtl~Ds~--g~~k~i~f~y~~~~~i~dyiNkW~~VtIt~dRlg~a~IYINGkLi~~~~I~~l~-- 174 (413) T 3rsj_A 104 KISLNYN-----KIIWTLQDTA--GNNQKLVFNYTQMISISDYINKWIFVTITNNRLGNSRIYINGNLIDEKSISNLG-- 174 (413) T ss_dssp EEEEETT-----EEEEEEECTT--SCEEEEEEECCSBSSSCSSTTSEEEEEEEECTTSEEEEEETTEEEEEEECTTCC-- T ss_pred EEEECCC-----eEEEEEEcCC--CcceeEEEecccccchhhccCceEEEEEEEcCCCceEEEECCEEeeccChhhhc-- Confidence 2333333 3444444333 3335556642 222 389999999999 6788999999999988554422 Q ss_pred eeecCCceEEEEeccccCCCeeeeeeeeeEEecCcccccc Q FBpp0290330 191 LVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1023) Q Consensus 191 l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1023) ++..+..+.++--+. ...+| +.|.+|+|+..+-...+ T Consensus 175 -~I~ss~~I~~~vd~~-~d~~~-~~Id~l~If~k~Lt~~E 211 (413) T 3rsj_A 175 -DIHVSDNILFKIVGC-NDTRY-VGIRYFKVFDTELGKTE 211 (413) T ss_dssp -CCCCCSEEEEEEESC-CSSCE-EEEEEEEEESSCCCHHH T ss_pred -ceeecCeEEEEeccc-CCCce-EEEeeEEEecccCCHHH Confidence 233455667764332 34478 99999999998855533No 46>2nyy_A Botulinum neurotoxin type A; botulinum, neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A Probab=97.18 E-value=0.011 Score=74.34 Aligned_cols=167 Identities=9% Similarity=0.141 Sum_probs=101.8 Q ss_pred CCcEEEccCCCCCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCCCCc----eEEEEEcCCCCeEEEEEE Q FBpp0290330 50 FAGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLKGG----YLFSVVNPLDTVVQLGVH 120 (1023) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g----~LfsI~~~~~~~~qlgL~ 120 (1023) ...|+++.| ...||.|..... |.. ...++-+.++ +|||.+|+|..+.+.. ..++|.+......-+.+. T Consensus 900 ~G~V~~v~G--ngnA~~L~gs~~S~~~I~~-~ndii~n~~~~nFSISFWvRipk~~~~~n~~~eyTIIn~k~nNsGW~I~ 976 (1295) T 2nyy_A 900 GSKVNFDPI--DKNQIQLFNLESSKIEVIL-KNAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVS 976 (1295) T ss_dssp CTTEEECTT--CTTCEEEESSTTSCEEEEE-CGGGCCTTTTSEEEEEEEEECCCCCSGGGGGCCEEEEEEEETTEEEEEE T ss_pred CCceEEEec--CCcEEEecCCCCcceEEec-CcchhcccccCceEEEEEEEcCCCCcccccCCceeeEeeccCCCCeEEE Confidence 356788877 467888866433 333 3444556677 9999999997655531 234444322222334444 Q ss_pred EcccccCceeEEEEEEecccCcceeEEEeee------ccCCCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCceeee Q FBpp0290330 121 LSPVVKNSYNVSLVYTQADQNIGRKLASFGV------AHVPDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIELVF 193 (1023) Q Consensus 121 ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v------~l~dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~~~~l~~ 193 (1023) +... .+.+-.. +.....+...|.+ +-..++||+|+++|. -...++|+|.+++.+..+.-. ..+ T Consensus 977 L~~n-----~liWtl~--DsNgn~k~i~f~y~~~~~I~dyiNkW~hVTIt~DRlg~a~IYINGkLv~sk~I~~L-g~I-- 1046 (1295) T 2nyy_A 977 LNYG-----EIIWTLQ--DTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNL-GNI-- 1046 (1295) T ss_dssp EETT-----EEEEEEE--CSSSCEEEEEEECCSBSSSCSSTTSCEEEEEEEETTSEEEEEETTEEEEEEECTTC-CCC-- T ss_pred eCCC-----cEEEEEE--ecCCcceeeEEecccccCcccccCceEEEEEEECCCCCeEEEECCEEeeccccccC-Cce-- Confidence 4433 2333333 3222334445542 111389999999999 567799999999998866543 233 Q ss_pred cCCceEEEEeccccCCCeeeeeeeeeEEecCcccccc Q FBpp0290330 194 DSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1023) Q Consensus 194 ~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1023) ..+..+.++--+ +....|.+.|.+|+|+..+-...+ T Consensus 1047 ~ssn~Is~gv~g-~~d~n~~g~ID~F~IfnK~Lt~~E 1082 (1295) T 2nyy_A 1047 HASNNIMFKLDG-CRDTHRYIWIKYFNLFDKELNEKE 1082 (1295) T ss_dssp CCCSEEEEEEES-CCCTTCEEEEEEEEEESSCCCHHH T ss_pred eecCeEEEEEec-cCCCCceeeEeeEEEecCcCCHHH Confidence 234455555332 355789999999999998855433No 47>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Probab=97.12 E-value=0.0059 Score=74.35 Aligned_cols=126 Identities=17% Similarity=0.276 Sum_probs=82.0 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEEEEEe Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVL 166 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~ 166 (1023) .++|.+.||... ..|.||...+. +...+|.|+|..- .|.|.|....+. ..+.-...+.|++||+|.|... T Consensus 226 ~~~isl~FrT~~-~~GlLl~~~~~-~~~d~l~L~L~~G-----~l~~~~~~g~~~---~~l~~~~~lnDg~WH~V~v~~~ 295 (608) T 2wjs_A 226 ISTVMFKFRTFS-SSALLMYLATR-DLKDFMSVELSDG-----HVKVSYDLGSGM---TSVVSNQNHNDGKWKAFTLSRI 295 (608) T ss_dssp EEEEEEEEEESC-SEEEEEEEECT-TSSSEEEEEEETT-----EEEEEEECSSCE---EEEEEEEECCSSSCEEEEEEEE T ss_pred cceEEEEEEeCC-CCeEEEEecCC-CCCceEEEEEECC-----EEEEEEECCCCc---eEeecCccccCCCeEEEEEEEc Confidence 577888888654 56888887764 4456888888654 477777543221 1222345678999999999999 Q ss_pred CCeEEEEE-cCccceee----eccCCCceeeecCCceEEEEeccc-------cCCCeeeeeeeeeEEe Q FBpp0290330 167 SDKVSFYY-DCELRNTT----LVTREPIELVFDSASTLYIGQAGS-------IIGGKFEGYLEKINVY 222 (1023) Q Consensus 167 ~~~VtLyV-DC~~~~t~----~l~r~~~~l~~~~~~~l~IGq~g~-------~~~~~F~G~LQ~l~i~ 222 (1023) +..++|.| ||...... ........+++.....+|||-... .....|.|=|++|+|- T Consensus 296 ~~~~~l~vdd~~~~~~~~~~~~~~g~~~~l~l~~~~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in 363 (608) T 2wjs_A 296 QKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEIS 363 (608) T ss_dssp TTEEEEEEEETTTCCEEEEEEECCSSCCCCCCCTTCEEEESCCCCCSCCCTTCCCCCCEEEEEEEEET T ss_pred ccEEEEEEEeccCCcccccccccCCcccccccCCCceEEEcCcccccccCccccccCcCccccccEEC Confidence 99999998 66532211 111112234444567899985421 1124699999999884No 48>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 4kbb_A* 2nm1_A 1f82_A ... Probab=97.07 E-value=0.014 Score=74.23 Aligned_cols=153 Identities=9% Similarity=0.190 Sum_probs=92.7 Q ss_pred CCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCC-CC---------ceEEEEEcCCCCeEEEEEEEcccc Q FBpp0290330 61 GFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSL-KG---------GYLFSVVNPLDTVVQLGVHLSPVV 125 (1023) Q Consensus 61 ~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~-~~---------g~LfsI~~~~~~~~qlgL~ls~~~ 125 (1023) ...|+.|..... |..+...++ +... +|||.+|+|+... .. ..+|+-.+. ...-.+. +... T Consensus 894 ~GkAl~FdGssgS~I~V~LPnnli~-ns~~d~FTISFWVK~~s~~t~~i~~f~~ne~tfIs~~~n-nsGW~IS--Ledn- 968 (1290) T 1epw_A 894 DKNQFKLTSSANSKIRVTQNQNIIF-NSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKN-NSGWKIS--IRGN- 968 (1290) T ss_dssp TTSEEEECSSTTCCEEEECCTTSSC-CCSSCCEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEET-TEEEEEE--EETT- T ss_pred cCceEEecCCCCcceEEEcCccccc-CCCCCCEEEEEEeccccccCccccccccccceEEecccC-CCCceEE--ecCC- Confidence 457888876544 444433322 2234 8999999999765 22 234544332 1222333 3221 Q ss_pred cCceeEEEEEEecccCcceeEEEee----eccC--CCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCceeeecCCceE Q FBpp0290330 126 KNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTL 199 (1023) Q Consensus 126 k~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~~~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l 199 (1023) .+.+...+..+. .....|. ..+. .++||||++++....+++|||.+++.+..+.... .+ .....+ T Consensus 969 ----tL~wsl~DsnGn--~~~Iwfd~~t~~~Ipdy~NkW~HVAITyD~g~vKIYINGeLVas~sitgL~-dI--~ss~~I 1039 (1290) T 1epw_A 969 ----RIIWTLIDINGK--TKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDIR-EV--IANGEI 1039 (1290) T ss_dssp ----EEEEEEECTTCC--EEEEEEECCSSCSSCSSTTSCEEEEEEECSSEEEEEETTEEEEEEECSSCC-CC--CCCSEE T ss_pred ----eEEEEEecCCCC--cceeEEecccccCCCCCCCceEEEEEEEcCCeEEEEECCEEeeccccccCc-cc--cccCee Confidence 344544432221 1122332 1222 5999999999999999999999998886544322 22 235678 Q ss_pred EEEeccccCCCeeeeeeeeeEEecCcccc Q FBpp0290330 200 YIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 200 ~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a 228 (1023) .+|.++. ....|.|.|.+|||+..+..+ T Consensus 1040 ~LGv~n~-~D~~F~G~IDEfRIYNRALSa 1067 (1290) T 1epw_A 1040 IFKLDGD-IDRTQFIWMKYFSIFNTELSQ 1067 (1290) T ss_dssp EEEEEES-CCTTCCEEEEEEEEESSCCCH T ss_pred EEEecCC-CCcCcceEeeeEEEECCcCCH Confidence 8888643 446689999999999987544No 49>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease, recepto secreted, binding domain, metalloprotease; 1.90A {Clostridium botulinum} SCOP: b.29.1.0 b.42.4.0 PDB: 3mpp_G Probab=97.00 E-value=0.014 Score=66.53 Aligned_cols=165 Identities=12% Similarity=0.192 Sum_probs=100.2 Q ss_pred CCcEEEccCCCCCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCC-CC---------ceEEEEEcCCCCe Q FBpp0290330 50 FAGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSL-KG---------GYLFSVVNPLDTV 114 (1023) Q Consensus 50 ~~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~-~~---------g~LfsI~~~~~~~ 114 (1023) ...|.++. -..-||.|..... |.++ ..+|-+.++ +|||.+|+|.... +. -.||.-.+- ... T Consensus 76 ~g~V~lv~--in~na~~L~~s~~s~i~I~~~-ndiiyN~~~~nFSIsFWvRipk~~t~~tn~y~~nEyTII~~~~n-NsG 151 (482) T 2vxr_A 76 GSDVIFND--IGNGQFKLNNSENSNITAHQS-KFVVYDSMFDNFSINFWVRTPKYNNNDIQTYLQNEYTIISCIKN-DSG 151 (482) T ss_dssp CTTCEEEC--STTCEEEEESSTTCCEEEECC-TTTSCEESSCCEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEET-TEE T ss_pred CCceEEEE--ccCcEEEecCCCCcceEEEcc-cceeeccccCceEEEEEEEcCCcccccccccccCCceEEEeecC-CCC Confidence 34556655 2345677755443 3333 334445667 9999999997443 22 257755542 222 Q ss_pred EEEEEEEcccccCceeEEEEEEecccCcceeEEEee----eccC--CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCC Q FBpp0290330 115 VQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFG----VAHV--PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTRE 187 (1023) Q Consensus 115 ~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~----v~l~--dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~ 187 (1023) -.++ +... .|.+-..+. ...++.+-|. +.+. -++||.|+++|. -....+|||.+++....+.-. T Consensus 152 W~Is--l~~n-----~LIWtl~Ds--~g~~k~I~f~y~~~~nisdyiNkW~fITITndRlGna~IYINGkLi~~~~I~~L 222 (482) T 2vxr_A 152 WKVS--IKGN-----RIIWTLIDV--NAKSKSIFFEYSIKDNISDYINKWFSITITNDRLGNANIYINGSLKKSEKILNL 222 (482) T ss_dssp EEEE--EETT-----EEEEEEECT--TSCEEEEEEECCSCCSSCSSTTSCEEEEEEECTTSEEEEEETTEEEEEEECTTC T ss_pred cEEE--ECCC-----eEEEEEEcC--CCcceeEEEecccccchhhccCceEEEEEEEcCCCceEEEECCEEeeccChhhh Confidence 3333 4333 344444333 2333556664 2222 389999999999 678899999999988755432 Q ss_pred CceeeecCCceEEEEeccccCCCeeeeeeeeeEEecCccccccc Q FBpp0290330 188 PIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINVT 231 (1023) Q Consensus 188 ~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~~ 231 (1023) +.+..+..+.++--+ .....|.+.|.+|+|+..+....+. T Consensus 223 ---~~I~~s~~I~fgvdn-~~D~n~~i~Id~l~If~keLt~~EI 262 (482) T 2vxr_A 223 ---DRINSSNDIDFKLIN-CTDTTKFVWIKDFNIFGRELNATEV 262 (482) T ss_dssp ---CCEECCSEEEEEEES-CCCTTCEEEEEEEEEESSCCCHHHH T ss_pred ---cccccCCeEEEEecc-CCCCCceeEEeeEEEecccCCHHHH Confidence 233345666676432 2556799999999999988555433No 50>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Probab=96.90 E-value=0.0084 Score=79.17 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=82.0 Q ss_pred EEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe-eeccCCCCeeEEEEEEeC Q FBpp0290330 89 AILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWNSIALQVLS 167 (1023) Q Consensus 89 SilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~dg~WHrlaLsV~~ 167 (1023) .|.+.|| ++...++||.|.+......+|.|.|..- .|.|.|..... ...+.+ ...+.||+||+|.|.-.+ T Consensus 1084 ~i~l~fr-T~~~~g~Ll~~~s~~~~~~~l~l~l~~G-----~l~~~~~~g~~---~~~~~~~~~~v~DG~wH~v~~~r~~ 1154 (1245) T 3qcw_A 1084 RLAIGFS-TVQKEAVLVRVDSSSGLGDYLELHIHQG-----KIGVKFNVGTD---DIAIEESNAIINDGKYHVVRFTRSG 1154 (1245) T ss_dssp EEEEEEE-BCCSSEEEEEEEECTTCCCEEEEEEETT-----EEEEEEESSSC---CEEEECCSCCCBSSSCEEEEEEEET T ss_pred eEEEEEE-EecCCeEEEEEeccCCCCceEEEEEECC-----EEEEEEECCCC---ceEeecCceEcCCCcEEEEEEEEcC Confidence 4555565 3466789999877533356788887643 47777764322 123333 456789999999999999 Q ss_pred CeEEEEEcCccceeeeccCCCceeeecCCceEEEEeccccCCCeeeeeeeeeEEec Q FBpp0290330 168 DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYG 223 (1023) Q Consensus 168 ~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~ 223 (1023) ..++|+||-..+.+. +........++....||||.. .....|+|-|+.|+|-. T Consensus 1155 ~~~~l~VD~~~~~~~-~~~g~~~~~~~~~~~l~lGg~--~~~~~F~Gcl~~v~~n~ 1207 (1245) T 3qcw_A 1155 GNATLQVDSWPVIER-YPAGRQLTIFNSQATIIIGGK--EQGQPFQGQLSGLYYNG 1207 (1245) T ss_dssp TEEEEEETTSCCEEE-CCCSCCCCCBCSEEEEEESST--TTTCCCCEEEEEEEETT T ss_pred CEEEEEECCccceee-cCCCcceEEeecCCeEEECCc--cCCCCceEEEeEEEECC Confidence 999999999765442 221111112345678999865 24578999999999843No 51>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Probab=96.65 E-value=0.027 Score=69.76 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=88.5 Q ss_pred CCceEEEEEEeecC-CCCceEEEEEcCCCC--eEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeec------cCC Q FBpp0290330 85 LYEFAILITFRQSS-LKGGYLFSVVNPLDT--VVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVA------HVP 155 (1023) Q Consensus 85 ~~eFSilaTlR~~~-~~~g~LfsI~~~~~~--~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~------l~d 155 (1023) |.+|||.+++|... .....||++.+...+ ..+|-|.+.... .+.|+.+..+... ...+..+ ..+ T Consensus 34 l~~~Tv~~~~~~~~~~~~~~Lfs~~~~t~~~~n~~~~l~~~~~g----~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~ 106 (679) T 2sli_A 34 MTQGTIILSYKSTSENGIQSLFSVGNSTAGNQDRHFHIYITNSG----GIGIELRNTDGVF---NYTLDRPASVRALYKG 106 (679) T ss_dssp CSSEEEEEEEEECCCCSEEEEEEEECCSTTCTTEEEEEEEETTS----CEEEEEEECTTTC---EEEEEESSCCCSEETT T ss_pred ccccEEEEEEEECCCCCceEEEEecCCCCCCccccEEEEEeCCC----EEEEEEecCCCce---eEEEecCcccceeccC Confidence 45999999999987 555569999964322 467888886532 3666665543221 1222222 124 Q ss_pred -CCeeEEEEEEeC--CeEEEEEcCccceeeeccCCCcee-eecCCceEEEEeccccC--CCeeeeeeeeeEEecCcccc Q FBpp0290330 156 -DKWNSIALQVLS--DKVSFYYDCELRNTTLVTREPIEL-VFDSASTLYIGQAGSII--GGKFEGYLEKINVYGNPDAI 228 (1023) Q Consensus 156 -g~WHrlaLsV~~--~~VtLyVDC~~~~t~~l~r~~~~l-~~~~~~~l~IGq~g~~~--~~~F~G~LQ~l~i~~dp~~a 228 (1023) ..||+|+++... ..++||||-..+.+..+... ..+ ++..-..++||+.-... ...|.|+|.++.|+...... T Consensus 107 ~~~w~hv~~t~ds~~g~~~lyvnG~~~~~~~~~~~-~~~~~~~g~~~~~iG~~~~~g~~~~~f~G~I~dv~v~~~~ls~ 184 (679) T 2sli_A 107 ERVFNTVALKADAANKQCRLFANGELLATLDKDAF-KFISDITGVDNVTLGGTKRQGKIAYPFGGTIGDIKVYSNALSD 184 (679) T ss_dssp EECCEEEEEEEETTTTEEEEEETTEEEEEEECSSC-CCGGGSTTCCEEEESSEEETTEEESCCCEEEEEEEEESSCCCH T ss_pred CCceEEEEEEEecCCCeEEEEECCEEEEeccCCcc-eeeccCCCcceEEECCeeCCCcccceEeeEEEEEEEcCCCCCH Confidence 379999999965 58999999999877665432 111 12334589999842111 23499999999999876544No 52>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Probab=96.38 E-value=0.022 Score=75.17 Aligned_cols=122 Identities=17% Similarity=0.292 Sum_probs=80.0 Q ss_pred ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEE--eeeccCCCCeeEEEEE Q FBpp0290330 87 EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS--FGVAHVPDKWNSIALQ 164 (1023) Q Consensus 87 eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~s--F~v~l~dg~WHrlaLs 164 (1023) ++.|.+.||... .++.||.... +...+|.|+|..- .|.|.|....+. ..++ ....+.|++||+|.|. T Consensus 859 ~~~is~~frT~~-~~GlLl~~~~--~~~dfl~l~L~~G-----~l~~~~~~g~g~---~~~~~~s~~~vnDG~WH~V~~~ 927 (1245) T 3qcw_A 859 SMHLFFQFKTTS-LDGLILYNSG--DGNDFIVVELVKG-----YLHYVFDLGNGA---NLIKGSSNKPLNDNQWHNVMIS 927 (1245) T ss_dssp CEEEEEEEECSC-SCEEEEEEEE--STTCEEEEEEETT-----EEEEEEESSSCC---EEEECCCSSCSCSSSCEEEEEE T ss_pred eEEEEEEEEECC-CCEEEEEeCC--CCCceEEEEEECC-----EEEEEEECCCCc---EEEEecCccccCCCCeEEEEEE Confidence 788888888765 4577776544 2356888888654 477777643322 2222 2567889999999999 Q ss_pred EeCCe-EEEEEcCccceeeeccCCCceeeecCCceEEEEeccc----------cCCCeeeeeeeeeEEec Q FBpp0290330 165 VLSDK-VSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS----------IIGGKFEGYLEKINVYG 223 (1023) Q Consensus 165 V~~~~-VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~----------~~~~~F~G~LQ~l~i~~ 223 (1023) ....+ .+|.||.......... ...| +..+.||||-... .....|+|=|++|+|-- T Consensus 928 ~~~~~~~~L~VD~~~~~~~~~~--~~~l--~~~~~lyvGG~~~~~~~~~~~~~~~~~~F~GCi~~l~ing 993 (1245) T 3qcw_A 928 RDTSNLHTVKIDTKITTQITAG--ARNL--DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNG 993 (1245) T ss_dssp ECTTCEEEEEETTEEEEEECCC--CCCC--CEEEEEEESCCCGGGGGGCCTTCCCSSBCCEEEEEEEETT T ss_pred EcCCceEEEEECCEeeeeecCC--ccee--ccCCCeEEccccccccccchhhcccccCccceecceeECC Confidence 98876 5799998764432211 1223 3356799986421 01256999999999953No 53>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E, botulism, domain organization, endopeptidase, translocation, hydrolase; 2.65A {Clostridium botulinum} Probab=95.79 E-value=0.29 Score=61.81 Aligned_cols=163 Identities=8% Similarity=0.053 Sum_probs=94.7 Q ss_pred CcEEEccCCCCCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCC-------CC-ceEEEEEcCCCCeEEE Q FBpp0290330 51 AGIEFGEAEDGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSL-------KG-GYLFSVVNPLDTVVQL 117 (1023) Q Consensus 51 ~GV~~v~G~d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~-------~~-g~LfsI~~~~~~~~ql 117 (1023) ..|.+|.| -.-|+.|..... |.++. .+|-+.++ +|||.+|+|-... ++ -.||.-.+. ++ .-. T Consensus 876 g~V~lv~G--n~na~~L~ss~~s~~~I~~~n-dii~n~~~~nFSIsFWvRipk~~~~~~n~~neyTII~~~~~-nN-sGW 950 (1252) T 3ffz_A 876 GDVYKYPT--NKNQFGIYNDKLSEVNISQND-YIIYDNKYKNFSISFWVRIPNYDNKIVNVNNEYTIINCMRD-NN-SGW 950 (1252) T ss_dssp ECCEECTT--CTTCEEEESSSCEEEEEECCT-TTSCCSSCCCCEEEEEEECCCCCSTTTCCCCCEEEEEEEET-TT-EEE T ss_pred CceEEEec--CCceEEeccCCCCceEEecCc-ceeeccccCceEEEEEEEcCCcCCcccccCCcceEEEeecC-CC-CCc Confidence 44566666 346677755433 44333 34445667 9999999996333 11 347755532 22 122 Q ss_pred EEEEcccccCceeEEEEEEecccCcceeEEEeeeccC------CCCeeEEEEEEe-CCeEEEEEcCccceeeeccCCCce Q FBpp0290330 118 GVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHV------PDKWNSIALQVL-SDKVSFYYDCELRNTTLVTREPIE 190 (1023) Q Consensus 118 gL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~------dg~WHrlaLsV~-~~~VtLyVDC~~~~t~~l~r~~~~ 190 (1023) .+-+... .|.+-..+. ...++.+.|.+.++ -++||+|+++|. -....+|+|.+++....+.-. T Consensus 951 ~I~l~~n-----~LiWtl~Ds--ngn~k~i~f~y~~~~~i~dyiNkW~fITIt~dRlg~a~IYINGkLi~~~~I~~l--- 1020 (1252) T 3ffz_A 951 KVSLNHN-----EIIWTLQDN--AGINQKLAFNYGNANGISDYINKWIFVTITNDRLGDSKLYINGNLIDQKSILNL--- 1020 (1252) T ss_dssp EEEEETT-----EEEEEEECS--SSCEEEEEEECCCCSBCCSSTTSCEEEEEEECTTSEEEEEETTEEEEEEECTTC--- T ss_pred EEEeCCC-----eEEEEEEcC--CCcceeEEEecccccccccccCceEEEEEEEcCCCceeEEECCEEeeccchhhc--- Confidence 2233332 233333332 22335555642221 389999999999 678899999999988755443 Q ss_pred eeecCCceEEEEeccccCCCeeeeeeeeeEEecCcccccc Q FBpp0290330 191 LVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINV 230 (1023) Q Consensus 191 l~~~~~~~l~IGq~g~~~~~~F~G~LQ~l~i~~dp~~a~~ 230 (1023) .++..+..+.++=-+. ... ..+.|.+|+|+..+-...+ T Consensus 1021 ~~I~ss~~I~~kl~g~-nd~-~~v~Id~l~If~k~Lt~~E 1058 (1252) T 3ffz_A 1021 GNIHVSDNILFKIVNC-SYT-RYIGIRYFNIFDKELDETE 1058 (1252) T ss_dssp CCCCCCSEEEEEEESC-SSC-CEEEEEEEEEESSCCCHHH T ss_pred ccceecCeEEEEecCC-CCC-cceeEeeeEeecCcCCHHH Confidence 2223455555533222 222 4799999999998855533No 54>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Probab=93.79 E-value=0.34 Score=49.68 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=59.1 Q ss_pred ceEEEEEEeecC----CCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEEE Q FBpp0290330 87 EFAILITFRQSS----LKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIA 162 (1023) Q Consensus 87 eFSilaTlR~~~----~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrla 162 (1023) +|.|.+.+|... .+.|++|.+.. +....+.+.+.... ..+.|+ ...++. ...++.....+..++|+++. T Consensus 65 df~l~~e~k~~~~~~~~nsGi~~r~~~--d~~~~Y~~~i~~~~---~~~~l~-~~~~g~-~~~l~~~~~~~~~g~W~~~~ 137 (185) T 4b1m_A 65 DFTYESDITIKDGNGRGAGALMFRSDK--DAKNGYLANVDAKH---DLVKFF-KFENGA-ASVIAEYKTPIDVNKKYHLK 137 (185) T ss_dssp SEEEEEEEEEEEEEEEEEEEEEEEECT--TSSSEEEEEEETTT---TEEEEE-EEETTE-EEEEEEEECCCCSSCCEEEE T ss_pred CEEEEEEEEEccCCCCccEEEEEEecC--CCCCeEEEEEECCC---CEEEEE-EecCCc-eeEeeeccccCCCCCeEEEE Confidence 999999999755 46678887632 33456667776542 134443 322221 11233323344579999999 Q ss_pred EEEeCCeEEEEEcCccceeee Q FBpp0290330 163 LQVLSDKVSFYYDCELRNTTL 183 (1023) Q Consensus 163 LsV~~~~VtLyVDC~~~~t~~ 183 (1023) |.|.+++|++|||..++.+.. T Consensus 138 I~~~G~~i~v~vNG~~v~~~~ 158 (185) T 4b1m_A 138 TEAEGDRFKIYLDDRLVIDAH 158 (185) T ss_dssp EEEETTEEEEEETTEEEEEEE T ss_pred EEEECCEEEEEECCEEEEEEE Confidence 999999999999999876543No 55>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... Probab=91.00 E-value=3.5 Score=50.75 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=47.0 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccce-ee--eccCCCceeeecCCceEEEEecccc-CCCeeeeeeeeeEEecCccc Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRN-TT--LVTREPIELVFDSASTLYIGQAGSI-IGGKFEGYLEKINVYGNPDA 227 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~-t~--~l~r~~~~l~~~~~~~l~IGq~g~~-~~~~F~G~LQ~l~i~~dp~~ 227 (1023) .++=|+++|.+++.+.++|||-+.+. .. .+.- .... .-++||||-.+.. ........+.++.||-.|.- T Consensus 555 ~~~~~qv~l~l~~~~~s~yvdg~~~~~~~~~~~~~-~~~~---~ishfy~gg~~~~~~~~~~~vtv~nv~lynr~l~ 627 (648) T 1ms9_A 555 MGKRYHVVLTMANKIGSVYIDGEPLEGSGQTVVPD-ERTP---DISHFYVGGYKRSGMPTDSRVTVNNVLLYNRQLN 627 (648) T ss_dssp TTCEEEEEEEEETTEEEEEETTEECTTCCEECSCS-SCCC---CCCEEEESSCSCTTSCCCCCEEEEEEEEESSCCC T ss_pred CCceEEEEEEEeCCEEEEEECCEeccccccccccC-Cccc---ccceEEEcCCCCccCCCCCCEEEEEeEEecCCCC Confidence 35669999999999999999998883 22 2221 1111 3479999875421 12345678899999988744No 56>4ccd_A Galactocerebrosidase; hydrolase, krabbe disease, glycosyl hydrolase, galactosidase D-galactal, lysosomal storage disease, enzyme-intermediate; HET: 2DG NAG; 1.97A {Mus musculus} PDB: 4ccc_A* 4cce_A* 4ufh_A* 4ufi_A* 4ufj_A* 4ufk_A* 4ufl_A* 4ufm_A* 3zr5_A* 3zr6_A* Probab=89.86 E-value=2.7 Score=51.84 Aligned_cols=89 Identities=7% Similarity=-0.083 Sum_probs=58.0 Q ss_pred ceEEEEEEeecCC-CC--ceEEEEEcCC---CCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeE Q FBpp0290330 87 EFAILITFRQSSL-KG--GYLFSVVNPL---DTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNS 160 (1023) Q Consensus 87 eFSilaTlR~~~~-~~--g~LfsI~~~~---~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHr 160 (1023) ||+|.+.+|.... +. +.+|.+.+.. +....+.+.|.... ++.|.. ..++ ...+++-.+.+..++||+ T Consensus 528 Dy~v~~dv~~~~~~~g~agl~fR~~~~G~~~~~~~gY~~~i~~~G----~~~l~k-~~~g--~~~La~~~~~~~~~~w~~ 600 (654) T 4ccd_A 528 NMTVQCDVYIETPRSGGVFIAGRVNKGGILIRSATGVFFWIFANG----SYRVTA-DLGG--WITYASGHADVTAKRWYT 600 (654) T ss_dssp EEEEEEEEEECSTTTCEEEEEEEECCCGGGGGGCEEEEEEEETTT----EEEEEE-ETTC--CSEEEEEECSCCTTCEEE T ss_pred cEEEEEEEEeccCCCCeEEEEEEEcCCCCCccccceEEEEEeCCC----eEEEEE-ecCC--eEEEEeeeccCCCCceEE Confidence 9999999998763 22 2445544421 12456677776431 344443 3333 223444455667899999 Q ss_pred EEEEEeCCeEEEEEcCccceee Q FBpp0290330 161 IALQVLSDKVSFYYDCELRNTT 182 (1023) Q Consensus 161 laLsV~~~~VtLyVDC~~~~t~ 182 (1023) |.|.|.+++|++|||-+++-+. T Consensus 601 l~v~v~G~~I~v~vdG~~v~~~ 622 (654) T 4ccd_A 601 LTLGIKGYFAFGMLNGTILWKN 622 (654) T ss_dssp EEEEEETTEEEEEETTEEEEEE T ss_pred EEEEEECCEEEEEECCEEEEEE Confidence 9999999999999999777554No 57>1ei8_A Collagen-like peptide (Pro-HYP-Gly)4-PG-(Pro-HYP- Gly)5; triple helix, contractIle protein; 2.00A {Synthetic} SCOP: k.3.1.1 Probab=88.47 E-value=0.73 Score=33.31 Aligned_cols=9 Identities=89% Similarity=2.114 Sum_probs=3.3 Q ss_pred CCCCCCCCC Q FBpp0290330 326 GPPGPPGPK 334 (1023) Q Consensus 326 GppGppGp~ 334 (1023) |++|++|++ T Consensus 17 G~~G~pG~~ 25 (29) T 1ei8_A 17 GPPGPPGPP 25 (29) T ss_dssp CCCCCCCCC T ss_pred CCCCCCCCC Confidence 333333333No 58>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 4e52_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A ... Probab=83.45 E-value=0.27 Score=49.24 Aligned_cols=13 Identities=23% Similarity=0.899 Sum_probs=9.7 Q ss_pred cccccCCCcEEEE Q FBpp0290330 967 KRQSCDSKLIILC 979 (1023) Q Consensus 967 ~~~~C~~~~~~lC 979 (1023) ...+|+..+..+| T Consensus 163 ~d~~C~~~~~~iC 175 (177) T 1pwb_A 163 NDRACGEKRLVVC 175 (177) T ss_dssp EEECTTSEEEEEE T ss_pred ECccCCCCeeEEE Confidence 3467888888888No 59>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 4e52_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A ... Probab=79.03 E-value=0.48 Score=47.40 Aligned_cols=7 Identities=0% Similarity=-0.054 Sum_probs=3.5 Q ss_pred eEEecCC Q FBpp0290330 924 MVWHGSL 930 (1023) Q Consensus 924 ~vw~Gs~ 930 (1023) .+|.|++ T Consensus 112 ~~WiGl~ 118 (177) T 1pwb_A 112 AAFLSMT 118 (177) T ss_dssp CEECSCB T ss_pred eEEEeeE Confidence 4555543No 60>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei} Probab=76.04 E-value=55 Score=35.01 Aligned_cols=178 Identities=13% Similarity=0.100 Sum_probs=89.5 Q ss_pred CCcEEEccC--CCCCcceEEcCCCcC---CCccccccCCC-CC---ceEEEEEEee-----cCCCCceEEEEEcCC-C-- Q FBpp0290330 50 FAGIEFGEA--EDGFPAFRFLQTADV---KSPYRMLLPEK-LY---EFAILITFRQ-----SSLKGGYLFSVVNPL-D-- 112 (1023) Q Consensus 50 ~~GV~~v~G--~d~~pAyrf~~~a~l---~~pt~~~fP~~-~~---eFSilaTlR~-----~~~~~g~LfsI~~~~-~-- 112 (1023) ...|+.|.. .++..|+||.-..+. ...-.++.-.. ++ ++.+-+.++. .......|++..... + T Consensus 21 ~~~i~~v~~~~~~G~~alr~~~~~d~~~~~~~RsE~~~~~~~~~g~~~wy~fs~~lp~d~~~~~~~~~iaQw~~~~~~~~ 100 (238) T 2zzj_A 21 QGTVSEVSNVVFKGTSALKMTQTYTPGYTGRYHSEVDHNRGYQRGEEQFYGFAFRLSEDWQFQPQSYNIAQFIANRPGAG 100 (238) T ss_dssp TCEEEEESSSCSSTTCEEEEEEECCTTCCSCCEEEEEEEEEEETTEEEEEEEEEEECTTCCCCSSEEEEEEEEEECTTCC T ss_pred CCceEEeCccccCCCCEEEEEEeCCCCCCCccceEEeecCCCCCCCcEEEEEEEECCCCCcCCCCceEEEEEEecCCCCC Confidence 456777766 456788888433221 11112221111 21 3333344442 122333455554322 1 Q ss_pred -C----eEEEEEEEcccccCceeEEEEEEecc--cC-cceeEEEe--eeccCCCCeeEEEEEEe-----CCeEEEEEcCc Q FBpp0290330 113 -T----VVQLGVHLSPVVKNSYNVSLVYTQAD--QN-IGRKLASF--GVAHVPDKWNSIALQVL-----SDKVSFYYDCE 177 (1023) Q Consensus 113 -~----~~qlgL~ls~~~k~~~~i~l~Y~~~~--~~-~~q~~~sF--~v~l~dg~WHrlaLsV~-----~~~VtLyVDC~ 177 (1023) + .+-|.|.+.+. .+.+.+.... .. -.+....| ..++.-|+||+|.|.|. ...+.||+|-+ T Consensus 101 ~~~~~~~P~~~l~v~g~-----~l~~r~~~g~~~~~~~~~~~~~~~~~~~~~~G~W~~~vi~v~ws~d~~G~~~vw~nG~ 175 (238) T 2zzj_A 101 CGGDDWMPSTMIWIQNN-----QLYSRYVNGHYRQPNCGRNIVTRPNLATVSAGAWHRVVLQIKWASDNTGYFKIWFDGA 175 (238) T ss_dssp CSSSSEEEEEEEEEETT-----EEEEEEEEECCBTTBCCEEEEEEEEEEECCTTSCEEEEEEEEECSSTTEEEEEEETTE T ss_pred CCccCCCCceeEEEECC-----EEEEEEecCCccCccccCceeeecccCccCCCCeEEEEEEEEecCCCCEEEEEEECCE Confidence 1 67788888665 2444432211 11 11233334 23555799999999997 46899999999 Q ss_pred cceeeeccCCCceeeecCCce--EEEEecccc--CCCeeeeeeeeeEEecCcccccccCCCCC Q FBpp0290330 178 LRNTTLVTREPIELVFDSAST--LYIGQAGSI--IGGKFEGYLEKINVYGNPDAINVTCMPPP 236 (1023) Q Consensus 178 ~~~t~~l~r~~~~l~~~~~~~--l~IGq~g~~--~~~~F~G~LQ~l~i~~dp~~a~~~C~~~~ 236 (1023) ++....-.. +.++.... +-+|--... +....+|......||.|.-..-..|.+.+ T Consensus 176 ~v~~~~g~~----~~~~d~~~~yfK~GiYr~~w~~~~~~~g~~~~~~iy~D~v~ig~t~~dv~ 234 (238) T 2zzj_A 176 KVHEEYNVA----TTVDDDSVFQFRVGLYANSWHDDGHMTGTQGFRQVWYDEVAVGTTFADVD 234 (238) T ss_dssp EEEEEEEEC----CSBSSCCEEEEEEEEECHHHHHHSSCCSSCCEEEEEEEEEEEESSHHHHC T ss_pred EEEEEeCCc----cccCCCCcceEEEEEcCCccccCcccCCCCcceEEEEeCeEEeCcHHHcC Confidence 875531111 11222223 444443221 01234555566677777666666676543No 61>3w9a_A CCGH131A, putative uncharacterized protein; beta-jelly roll, hydrolase; 1.99A {Coprinopsis cinerea} Probab=64.83 E-value=32 Score=37.21 Aligned_cols=76 Identities=8% Similarity=0.100 Sum_probs=49.4 Q ss_pred ceEEEEEEeec-----CCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccCcceeEEEeeeccCCCCeeEE Q FBpp0290330 87 EFAILITFRQS-----SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSI 161 (1023) Q Consensus 87 eFSilaTlR~~-----~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~WHrl 161 (1023) --++.+.||.+ ..+..|+++..++ -+++|++.... +.. .|.|.... ...|..++.++.||+| T Consensus 93 ~~~~HfSv~~d~~~pln~sheyq~~f~ES----h~felk~G~~~-~~~--~l~~~~~~------~~~wstpf~~~~W~NF 159 (245) T 3w9a_A 93 NLFYHFSIKRTNTNAPDPTLEHQVMFFES----HFTELKYGVGS-NPS--NLGWYAGG------TERWSTPFTADTWFNF 159 (245) T ss_dssp EEEEEEEEECCSTTCCCTTSCEEEEEETT----CSEEEEESCSS-CTT--EEEEEETT------EEEEEEECCTTCCEEE T ss_pred eEEEEEEEEeccccCCcCccceeeecccc----ceEEEEeCCCC-CCC--cEEEecCC------ceEEEeeecCCcEEEE Confidence 34555556642 2456787776663 27888887432 122 35565532 2567889899999999 Q ss_pred EEEEeC--CeEEEEEc Q FBpp0290330 162 ALQVLS--DKVSFYYD 175 (1023) Q Consensus 162 aLsV~~--~~VtLyVD 175 (1023) ++.|.= +.|.+|.- T Consensus 160 Ai~iDf~~nt~~vy~S 175 (245) T 3w9a_A 160 AYDIDFTAKTVGLWAS 175 (245) T ss_dssp EEEEETTTTEEEEEEE T ss_pred EEEeecCCCEEEEEEe Confidence 998854 68888764No 62>4le3_A Beta-glucanase; GH131, hydrolase; 1.80A {Podospora anserina} PDB: 4le4_A* Probab=59.00 E-value=35 Score=36.98 Aligned_cols=76 Identities=9% Similarity=0.143 Sum_probs=48.6 Q ss_pred eEEEEEEeec-----CCCCceEEEEEcCCCCeEEEEEEEc----ccccCceeEEEEEEecccCcceeEEEeeeccCCCCe Q FBpp0290330 88 FAILITFRQS-----SLKGGYLFSVVNPLDTVVQLGVHLS----PVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKW 158 (1023) Q Consensus 88 FSilaTlR~~-----~~~~g~LfsI~~~~~~~~qlgL~ls----~~~k~~~~i~l~Y~~~~~~~~q~~~sF~v~l~dg~W 158 (1023) -++.+.||.+ ..+..|+++..++ .+++|++. ....+..+ |.+.... ...|.+++.++.| T Consensus 95 ~~~HfSv~~d~~~pln~shEyqi~F~ES----h~~elk~G~~~g~~~~~~~~--l~~~~~~------~~~wstp~~~~~W 162 (252) T 4le3_A 95 VYYHFSLMRKDINAPATTREHQIAFFES----HFTELKSGWLSGAPGISDTL--LRWCVGG------QTQWSVEWAADVW 162 (252) T ss_dssp EEEEEEEECCSTTCCCTTSCEEEEEETT----CSEEEEESCCSSSCCGGGGE--EEEEETT------EEEEEEECCTTCC T ss_pred EEEEEEEEeCcCcCCCCCcceeEEeecc----cEEEEEeccccCCCCCCCCe--EEEecCC------ceEEEeeeccCcE Confidence 3445555542 2356788877773 37888876 11111223 4444431 3467889999999 Q ss_pred eEEEEEEe--CCeEEEEEc Q FBpp0290330 159 NSIALQVL--SDKVSFYYD 175 (1023) Q Consensus 159 HrlaLsV~--~~~VtLyVD 175 (1023) |+||+.|. .+.|.+|.- T Consensus 163 ~NFA~~iDf~~nt~~v~~S 181 (252) T 4le3_A 163 HNVAYEIDFAAGTVGFWHS 181 (252) T ss_dssp EEEEEEEETTTTEEEEEEE T ss_pred EEEEEEeeecCCEEEEEEe Confidence 99999987 788998864No 63>3zyp_A CIP1; metal binding protein, calcium-binding, CBM-containing, beta sandwich jelly roll, carbohydrate-binding; HET: NAG; 1.50A {Hypocrea jecorina} Probab=58.66 E-value=64 Score=34.28 Aligned_cols=117 Identities=6% Similarity=0.066 Sum_probs=67.5 Q ss_pred CCCCcceEEcCCCcCCCcccccc-CCCCC--ceEEEEEEeecCC---CCceEEEEEcCCCCeEEEEEEEcccccCceeEE Q FBpp0290330 59 EDGFPAFRFLQTADVKSPYRMLL-PEKLY--EFAILITFRQSSL---KGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVS 132 (1023) Q Consensus 59 ~d~~pAyrf~~~a~l~~pt~~~f-P~~~~--eFSilaTlR~~~~---~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~ 132 (1023) |.+..+.||...+. ....+..| ...++ +|.+-++||..+. +...+|++.+..++.. .|++.+... + T Consensus 36 hsG~~Slrv~~ga~-g~~~~~~~~~~a~psg~~y~R~~v~~~~~~~~~h~t~~~~~~~~~~~~--~lRiGgq~~----~- 107 (218) T 3zyp_A 36 HSGSNSMKVVGGPN-GYCGHIFFGTTQVPTGDVYVRAWIRLQTALGSNHVTFIIMPDTAQGGK--HLRIGGQSQ----V- 107 (218) T ss_dssp SSSSCEEEEECCSS-GGGGCEEEEECCCCSSSEEEEEEEEESSCCCSSCEEEEEEEBGGGTTC--EEEEEEETT----E- T ss_pred cCCceeEEEecCCC-CCccceeeeeccCCCCceEEEEEEEeccCCCCCcEEEEEeecCCCCCc--cEEEccccc----e- Confidence 67788888853321 11112111 12333 7788888887543 3347888886655322 356665422 2 Q ss_pred EEEEecc--cC---cceeEEEeeeccCCCCeeEEEEEEeC-CeEEEEEcCccceeee Q FBpp0290330 133 LVYTQAD--QN---IGRKLASFGVAHVPDKWNSIALQVLS-DKVSFYYDCELRNTTL 183 (1023) Q Consensus 133 l~Y~~~~--~~---~~q~~~sF~v~l~dg~WHrlaLsV~~-~~VtLyVDC~~~~t~~ 183 (1023) |.|.... .. .+..-+.-.+.+..++||.|.+.|.. .++++|||-+++.... T Consensus 108 l~~n~~sddat~p~~sp~G~a~s~~l~~~~W~C~E~~v~~~g~~~~WldG~~v~~lt 164 (218) T 3zyp_A 108 LDYNRESDDATLPDLSPNGIASTVTLPTGAFQCFEYHLGTDGTIETWLNGSLIPGMT 164 (218) T ss_dssp EEEEETTTCCEESCSSHHHHHHSCCCCCSSCEEEEEEECSSSCEEEEETTEECGGGC T ss_pred eeeeeccCcccccccCCCcccccccccCCcEEEEEEEECCCCeEEEEECCEEeeeEE Confidence 3443331 11 11010111457789999999999975 4899999999987653No 64>2dpr_A Conantokin-T, CON-T; conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Conus tulipa} PDB: 1ont_A* Probab=55.96 E-value=6 Score=25.53 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=10.7 Q ss_pred hHHHHHHHHhhh Q FBpp0290330 1011 ADEYAAHLENLL 1022 (1023) Q Consensus 1011 ~~~~~~~~~~~~ 1022 (1023) |+||++.||+|. T Consensus 2 eeeyqemlenlr 13 (21) T 2dpr_A 2 EEEYQEMLENLR 13 (26) T ss_dssp CHHHHHHHHHHH T ss_pred cHHHHHHHHHHH Confidence 689999999985No 65>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 Probab=44.73 E-value=5.6 Score=39.70 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.5 Q ss_pred cccccCCCcEEEE Q FBpp0290330 967 KRQSCDSKLIILC 979 (1023) Q Consensus 967 ~~~~C~~~~~~lC 979 (1023) ...+|+.++..+| T Consensus 152 ~d~~C~~~~~~IC 164 (168) T 1buu_A 152 NDISCQASHTAVC 164 (168) T ss_dssp EEECTTSCEEEEE T ss_pred ECcCCCCCeeEEE Confidence 3468999999998No 66>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Probab=35.49 E-value=1.1e+02 Score=32.94 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=26.3 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL 183 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~~ 183 (1023) ...||..+|....++|++|||-+++.+.. T Consensus 189 ~~~fH~Y~veW~~~~I~~yvDG~~~~~~~ 217 (271) T 1dyp_A 189 RNDFHTYGVNVTKDKITWYVDGEIVGEKD 217 (271) T ss_dssp TSSCEEEEEEECSSEEEEEETTEEEEEEE T ss_pred CCCeEEEEEEEECCEEEEEECCEEEeeec Confidence 57999999999999999999999987753No 67>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Probab=29.84 E-value=1.7e+02 Score=30.68 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=49.4 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--ccCCCceeeecCCceEEEEe-----ccc-cCCCeeeeeeeeeEEecCcc Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--VTREPIELVFDSASTLYIGQ-----AGS-IIGGKFEGYLEKINVYGNPD 226 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~~--l~r~~~~l~~~~~~~l~IGq-----~g~-~~~~~F~G~LQ~l~i~~dp~ 226 (1023) ...||..+|.-..+.|++|||-+++.+.. ++..+..|.| .|+++. .+. .....++-.|.-++++.... T Consensus 15 ~~~fH~Y~~eW~~~~i~~~vDg~~~~~~~~~~P~~p~~lil----nl~~g~g~~~W~g~~~~~~p~~m~vDyVrvy~~~~ 90 (214) T 1ajo_A 15 SKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMM----NLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNQT 90 (214) T ss_dssp GGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEE----EEEEBSSCHHHHCCCCCCCCEEEEEEEEEEEESST T ss_pred cCCcEEEEEEEeCCeEEEEECCEEEEEEcCCCCCCCcEEEE----EEEecCCccccCCCCCcCCCceEEEEEEEEeeccc Confidence 56899999999999999999999987753 3333333432 355551 011 11234566777788888775 Q ss_pred cccccCCC Q FBpp0290330 227 AINVTCMP 234 (1023) Q Consensus 227 ~a~~~C~~ 234 (1023) .....|+- T Consensus 91 ~~~~~ddF 98 (214) T 1ajo_A 91 GGSFFEPF 98 (214) T ss_dssp TCCEEECC T ss_pred cceeeccc Confidence 55555554No 68>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} SCOP: b.29.1.0 PDB: 2dyc_A Probab=26.69 E-value=5.6e+02 Score=25.66 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=61.0 Q ss_pred CCCcceEEcCCCc----CCCccccccCCCCC-ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEE Q FBpp0290330 60 DGFPAFRFLQTAD----VKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLV 134 (1023) Q Consensus 60 d~~pAyrf~~~a~----l~~pt~~~fP~~~~-eFSilaTlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~k~~~~i~l~ 134 (1023) ..+|||....... ...|....+|.+|. .=+|+++=+.......+-+-+....+...-+.|.++.+-+....|..- T Consensus 10 ~~~~~~~~~~~~~~~~~p~vPf~~~ip~gL~~G~~I~I~G~v~~~a~rF~Inl~~g~~~~~dIalHfnpRf~~~~~IV~N 89 (164) T 3i8t_A 10 HTDPAYVPAPGYQPTYNPTLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGWDKVVFN 89 (164) T ss_dssp ---------------CCCCSSEEEECTTCCCTTCEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEECSSSCEEEEE T ss_pred cCCcccccCCCCCcccCCCCCEEeecCCCCcCCCEEEEEEEECCCCCEEEEEeccCCCCCCCEEEEEeeeeCCCCEEEEE Confidence 3578887765543 46678888898885 555555555544444566666543211223445555443211233322 Q ss_pred EEecccCcceeEEEeeeccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290330 135 YTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1023) Q Consensus 135 Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~ 182 (1023) ....+ ...++-.....+...++=-.|.|.+..+...++||-..+.+. T Consensus 90 S~~~g-~WG~EEr~~~~PF~~G~~F~l~I~~~~~~f~V~VNg~~~~~F 136 (164) T 3i8t_A 90 TMQSG-QWGKEEKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEY 136 (164) T ss_dssp EEETT-EECCCEEESCCCCCTTCEEEEEEEECSSEEEEEETTEEEEEE T ss_pred cccCC-EeCCCcccCCCCCccCCEEEEEEEEccCEEEEEECCEEEEEE Confidence 22222 111111111345567888899999999999999999876553No 69>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 Probab=25.82 E-value=17 Score=36.04 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=5.1 Q ss_pred cchHHHHH Q FBpp0290330 835 GADFACYR 842 (1023) Q Consensus 835 GAD~~C~~ 842 (1023) -|..+|++ T Consensus 70 ~A~~~C~~ 77 (168) T 1buu_A 70 KVKALCSE 77 (168) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH Confidence 46677764No 70>4jqt_A Putative glycosyl hydrolase; PF06439 family protein, DUF1080, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.49A {Bacteroides thetaiotaomicron} Probab=25.70 E-value=1.5e+02 Score=34.31 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=56.1 Q ss_pred cccCCCCC-ceEEEEEEeec-CCCCceEEEEEcCCC----CeEEEEEEEcccccCceeEEEEEEecccCcceeEEEe--- Q FBpp0290330 79 MLLPEKLY-EFAILITFRQS-SLKGGYLFSVVNPLD----TVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF--- 149 (1023) Q Consensus 79 ~~fP~~~~-eFSilaTlR~~-~~~~g~LfsI~~~~~----~~~qlgL~ls~~~k~~~~i~l~Y~~~~~~~~q~~~sF--- 149 (1023) .++.+.-+ +|.|.+-+|.. ..++|++|....... ...-+.+++....+. .. --+|...... .+..+ T Consensus 44 ~l~t~~~y~dF~L~~e~k~~~~~NSGI~~r~~~~~~~~~~~~~gyqvqi~~~~~~-~~-g~ly~~~~~g---~l~~~~~~ 118 (431) T 4jqt_A 44 FLATTKNYGDFILEFDFKIDDGLNSGVQLRSESKKDYQNGRVHGYQFEIDPSKRA-WS-GGIYDEARRN---WLYPLTLN 118 (431) T ss_dssp EEEESSCBSSEEEEEEEEECTTCCEEEEEEEBCCTTTGGGCCBEEEEEECCSTTC-CT-TCEEEETTTE---EEECGGGS T ss_pred eEEeCCccccEEEEEEEEeCCCCceEEEEEecCcccccCCceeEEEEEEcCCCCC-Cc-CcccCcCccc---eecccccC Confidence 34444445 99999999975 467788887754211 111244445432110 00 0123221100 00000 Q ss_pred ---eeccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290330 150 ---GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1023) Q Consensus 150 ---~v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~ 182 (1023) ...+-.++|+++.|.|.+++|++|||-.++... T Consensus 119 p~~~~~~~~geWn~~~I~~~g~~i~v~lNG~~v~~~ 154 (431) T 4jqt_A 119 PAAKTAFKNNAWNKARIEAIGNSIRTWINGVPCANI 154 (431) T ss_dssp GGGGGCCCTTSCEEEEEEEETTEEEEEETTEEEEEE T ss_pred chhhcccCCCCcEEEEEEEECCEEEEEECCEEEEEE Confidence 111236899999999999999999999887654No 71>3wvj_A Beta-glucanase; thermostability, industrial enzyme, pastoris, A classic beta-jellyroll fold, hydrolase; HET: B3P; 1.95A {Clostridium thermocellum} Probab=25.66 E-value=6.4e+02 Score=26.02 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=42.4 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--ccCCCceeeecCCceEEEEe-----cccc-CCCeeeeeeeeeEEec Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--VTREPIELVFDSASTLYIGQ-----AGSI-IGGKFEGYLEKINVYG 223 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~~--l~r~~~~l~~~~~~~l~IGq-----~g~~-~~~~F~G~LQ~l~i~~ 223 (1023) ...||..+|....++|++|||-+++.+.. ++..+..|.| .|++|. .+.. ....|+-.|.-|||+. T Consensus 143 ~~~fH~Y~~~W~~~~i~~yvDg~~~~~~~~~~p~~p~~lil----nl~~g~g~~~W~G~~~~~~p~~~~vDyVrvy~ 215 (220) T 3wvj_A 143 SQDFHTYGFEWRPDYIDFYVDGKKVYRGTRNIPVTPGKIMM----NLWPGIGVDEWLGRYDGRTPLQAEYEYVKYYP 215 (220) T ss_dssp TTSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCEEEEE----EEEEBSSCHHHHCCCCCCCCEEEEEEEEEEES T ss_pred CCCcEEEEEEEECCEEEEEECCEEEEEECCCCCCCCcEEEE----EEECCCCCcCCCCCCCCCCCeEEEEEEEEEEe Confidence 57999999999999999999999987752 3322333322 345542 1111 1234566788888875No 72>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} Probab=25.38 E-value=75 Score=32.91 Aligned_cols=95 Identities=12% Similarity=0.221 Sum_probs=50.8 Q ss_pred ceEEEEEEeec-CCCCceEEEEEcCCCC-eEEEEEEEcccccCcee-EEEEEEecccCcceeEE-EeeeccCCCCeeEEE Q FBpp0290330 87 EFAILITFRQS-SLKGGYLFSVVNPLDT-VVQLGVHLSPVVKNSYN-VSLVYTQADQNIGRKLA-SFGVAHVPDKWNSIA 162 (1023) Q Consensus 87 eFSilaTlR~~-~~~~g~LfsI~~~~~~-~~qlgL~ls~~~k~~~~-i~l~Y~~~~~~~~q~~~-sF~v~l~dg~WHrla 162 (1023) +|.|.+-+|.. ..++|++|.+....+. ..-++++|......... +. .+...++.-....+ .-......++|+++. T Consensus 48 df~L~~e~k~~~~~NSGi~~r~~~~~~~~~~G~E~Qi~d~~~~~~~~~~-~~~~~G~ly~~~~~~~~~~~kp~geWn~~~ 126 (201) T 3imm_A 48 NFELDLDFKTDVGTNSGVVVYCTDTKDWIPNSVEIQIADDHCEKWGNGK-PYEKCGAIYGHLGAVQDKVVKKPGEWNHMR 126 (201) T ss_dssp SEEEEEEEEECTTCEEEEEEEESCSSSCTTSSEEEEEECTTCCTTTTCC-GGGSTTSBTTTBCCSSSCCSCCTTSEEEEE T ss_pred CEEEEEEEEeCCCCCCEEEEEeccCCCCcCceEEEEEECCCCCcccccC-CccccceeecccCcccccccCCCCccEEEE Confidence 99999999974 4667888877653110 01134444322100000 00 00001110000000 001112368999999 Q ss_pred EEEeCCeEEEEEcCccceee Q FBpp0290330 163 LQVLSDKVSFYYDCELRNTT 182 (1023) Q Consensus 163 LsV~~~~VtLyVDC~~~~t~ 182 (1023) |.|.+++|++|||-.++... T Consensus 127 I~~~g~~i~v~lNG~~v~~~ 146 (201) T 3imm_A 127 IKCAGQHIMVILNGKKVTEM 146 (201) T ss_dssp EEEETTEEEEEETTEEEEEE T ss_pred EEEECCEEEEEECCEEEEEE Confidence 99999999999999998764No 73>4qhz_A Putative glycosyl hydrolase; PF06439 family protein, DUF1080, structural genomics, joint for structural genomics, JCSG; HET: MLY; 2.13A {Parabacteroides distasonis} Probab=23.06 E-value=64 Score=34.87 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=25.1 Q ss_pred CCCCeeEEEEEEe------------CCeEEEEEcCccceee Q FBpp0290330 154 VPDKWNSIALQVL------------SDKVSFYYDCELRNTT 182 (1023) Q Consensus 154 ~dg~WHrlaLsV~------------~~~VtLyVDC~~~~t~ 182 (1023) -.++|+++.|.|. +.+|++++|-.++... T Consensus 161 p~GeWNt~~I~~~a~~f~~~G~~~~g~~itv~lNG~~V~~~ 201 (246) T 4qhz_A 161 XPGEWNVYDIIYTAPTFKEDGSYRTHPTVTVIQNGVVLQNH 201 (246) T ss_dssp CTTSEEEEEEEEECCEECTTSSEEECCEEEEEETTEEEEEE T ss_pred CcCcceEEEEEEEecccccccccccCCEEEEEECCEEEEEE Confidence 3689999999996 6899999999998664No 74>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Probab=22.75 E-value=1e+03 Score=27.36 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=45.7 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--ccCCCceeeecCCceEEEEec-----cc-cCCCeeeeeeeeeEEecCcc Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--VTREPIELVFDSASTLYIGQA-----GS-IIGGKFEGYLEKINVYGNPD 226 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~~--l~r~~~~l~~~~~~~l~IGq~-----g~-~~~~~F~G~LQ~l~i~~dp~ 226 (1023) ...||..+|....+.|++|||-+++.+.. ++..+..|.| .|+++.. +. .....+.-.|.-|||+.... T Consensus 83 ~~~FHtY~veWtp~~I~wyVDG~~v~t~~~~~P~~P~~liL----NlwvGgg~g~W~G~p~~~~P~~m~VDyVRVYq~~~ 158 (394) T 1axk_A 83 SKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMM----NLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNAS 158 (394) T ss_dssp GGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEE----EEEEBSSCHHHHCCCCCCCCEEEEEEEEEEEECCC T ss_pred CCCeEEEEEEEECCEEEEEECCEEEEEECCCCCCCCeEEEE----EEEccCCccccCCCCCCCCCeEEEEEEEEeeccCC Confidence 46899999999999999999999887653 3333444433 3455520 11 12234677888999988653No 75>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Probab=22.69 E-value=3.7e+02 Score=28.04 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=46.3 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--ccCCCceeeecCCceEEEEe-----ccc-cCCCeeeeeeeeeEEecCcc Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--VTREPIELVFDSASTLYIGQ-----AGS-IIGGKFEGYLEKINVYGNPD 226 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~~--l~r~~~~l~~~~~~~l~IGq-----~g~-~~~~~F~G~LQ~l~i~~dp~ 226 (1023) ...||..+|....+.|++|||-+++.+.. ++..+..|.| .|+++. ++. .....++-.|.-|||+.... T Consensus 58 ~~~fHtY~ieW~~~~I~~yvDg~~~~~~~~~~P~~p~~lil----nl~~ggg~~~W~G~~~~~~p~~m~VDyVrvy~~~~ 133 (214) T 1ajk_A 58 SKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMM----NLWNGTGVDDWLGSYNGANPLYAEYDWVKYTSNQT 133 (214) T ss_dssp GGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEE----EEEECC--CGGGGTCCTTSCEEEEEEEEEEEESST T ss_pred CCCcEEEEEEEECCEEEEEECCEEEEEEcCCCCCCCcEEEE----EEEcCCCccccCCCCCCCCCeEEEEEEEEEEECcc Confidence 46899999999999999999999887753 3333333332 344442 111 11235677899999997654 Q ss_pred cc Q FBpp0290330 227 AI 228 (1023) Q Consensus 227 ~a 228 (1023) .. T Consensus 134 ~~ 135 (214) T 1ajk_A 134 GG 135 (214) T ss_dssp TC T ss_pred cc Confidence 43No 76>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Probab=22.48 E-value=8.7e+02 Score=26.40 Aligned_cols=67 Identities=12% Similarity=0.120 Sum_probs=43.5 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceeee--------ccC-CCceeeecCCceEEEEec-----ccc----CCCeeeeee Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTTL--------VTR-EPIELVFDSASTLYIGQA-----GSI----IGGKFEGYL 216 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~~--------l~r-~~~~l~~~~~~~l~IGq~-----g~~----~~~~F~G~L 216 (1023) ...||..+|....+.|++|||-+++.+.. ++. .+..|. ..|++|-. +.. ....|.-.+ T Consensus 130 ~~~fHtY~ieWtp~~I~~yVDG~~v~~~~~~~~~g~~~P~~~Pm~li----lnlw~gG~Wat~GG~~~~d~~~~P~~m~v 205 (278) T 1umz_A 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIY----SSLWNADDWATRGGLEKTDWSKAPFIASY 205 (278) T ss_dssp TTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCBEEE----EEEEECTTTSSGGGTSCCCGGGCCEEEEE T ss_pred CCCCEEEEEEEeCCeEEEEECCEEEEEEecccCCCccCCcCCceEEE----EEEEcCCCccccCCcccccccCCCEEEEE Confidence 57999999999999999999999887643 111 122222 23444431 111 113578889 Q ss_pred eeeEEecCc Q FBpp0290330 217 EKINVYGNP 225 (1023) Q Consensus 217 Q~l~i~~dp 225 (1023) ..|+|+.-. T Consensus 206 d~vrv~~~~ 214 (278) T 1umz_A 206 RSFHIDGCE 214 (278) T ss_dssp EEEEEEEEE T ss_pred EEEEEEecc Confidence 999998654No 77>2cws_A Alginate lyase A1-II'; polysaccharide lyase family-7; HET: SO4; 1.00A {Sphingomonas SP} SCOP: b.29.1.0 PDB: 2z42_A 2zac_A* 2zab_A* 2zaa_A* 2za9_A Probab=21.71 E-value=8.4e+02 Score=25.97 Aligned_cols=87 Identities=6% Similarity=0.011 Sum_probs=52.2 Q ss_pred ceEEEEEEee---cCCCCceEEEEEcCCC----CeEEEEEEEcccccCceeEEEEEEecc-cCcceeEEEeeeccCCCCe Q FBpp0290330 87 EFAILITFRQ---SSLKGGYLFSVVNPLD----TVVQLGVHLSPVVKNSYNVSLVYTQAD-QNIGRKLASFGVAHVPDKW 158 (1023) Q Consensus 87 eFSilaTlR~---~~~~~g~LfsI~~~~~----~~~qlgL~ls~~~k~~~~i~l~Y~~~~-~~~~q~~~sF~v~l~dg~W 158 (1023) .-.|.+|++. .....-+|-+|....+ ....|.|....- .|.+.|+... .... ......-.+..++| T Consensus 88 ~~~l~atl~V~~Vp~~~~VvIgQIH~~~~~~~~~~pllklyy~~G-----~i~~~~~~~~~~~~~-~~~~~~~~i~lg~~ 161 (237) T 2cws_A 88 THTMKLSGKTVQLPSSGKIIVAQIHGIMDDGTNAPPLVKAVFQDG-----QLDMQVKQNSDGTGS-DVHNYFTGIKLGDL 161 (237) T ss_dssp EEEEEEEEEEEECCTTCCEEEEEEEEECTTSCEEEEEEEEEEETT-----EEEEEEESCSSSCSC-EECCEEETCCTTCC T ss_pred CeeEEEEEEEEecCCCCCEEEEEEecCCCCCCCCCceEEEEEeCC-----eEEEEEEecCCCCCc-ceeEeecCccCCCE Confidence 5688888884 2223344777776532 155677766521 3666665321 1111 11111223445788 Q ss_pred eEEEEEEeCCeEEEEEcCccc Q FBpp0290330 159 NSIALQVLSDKVSFYYDCELR 179 (1023) Q Consensus 159 HrlaLsV~~~~VtLyVDC~~~ 179 (1023) =++.|.|.++.+++++|-+.. T Consensus 162 F~y~I~v~~g~l~V~ing~~~ 182 (237) T 2cws_A 162 YNMEIRVTDGVAYVTMNGDTR 182 (237) T ss_dssp EEEEEEEETTEEEEEETTEEE T ss_pred EEEEEEEeCCEEEEEEcCcEe Confidence 899999999999999998764No 78>4bpz_A Endo-1,3-beta-glucanase, family GH16; hydrolase, marine laminarinase; HET: GLC BGC; 1.13A {Zobellia galactanivorans} PDB: 4bow_A* 4bq1_A Probab=20.31 E-value=3.4e+02 Score=29.00 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=27.4 Q ss_pred eccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290330 151 VAHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1023) Q Consensus 151 v~l~dg~WHrlaLsV~~~~VtLyVDC~~~~t~ 182 (1023) +......||..+|....+.|++|||-+++.+. T Consensus 179 ~~~~~~~fH~Y~~eW~~~~I~~yvDg~~~~~~ 210 (256) T 4bpz_A 179 ITNASGSFHVYSLEWNASAMKVFLDDTLVYEL 210 (256) T ss_dssp CSCTTTSCEEEEEEECSSEEEEEETTEEEEEE T ss_pred cCCCCCCCEEEEEEEECCEEEEEECCeEEEEe Confidence 34456799999999999999999999887765No 79>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases, structural genomics, center for structural genomics, JCSG; 1.85A {Parabacteroides distasonis} Probab=20.22 E-value=1.1e+02 Score=32.15 Aligned_cols=102 Identities=12% Similarity=0.228 Sum_probs=53.6 Q ss_pred ccCCCCC-ceEEEEEEeec-CCCCceEEEEEcCCCC-eEEEEEEEcccccCcee-EEEEEEecccCcceeEE-EeeeccC Q FBpp0290330 80 LLPEKLY-EFAILITFRQS-SLKGGYLFSVVNPLDT-VVQLGVHLSPVVKNSYN-VSLVYTQADQNIGRKLA-SFGVAHV 154 (1023) Q Consensus 80 ~fP~~~~-eFSilaTlR~~-~~~~g~LfsI~~~~~~-~~qlgL~ls~~~k~~~~-i~l~Y~~~~~~~~q~~~-sF~v~l~ 154 (1023) ++-+.-+ +|.|.+-+|.. ..++|++|.+....+. ..-++++|......... + ......++.-....+ .-..... T Consensus 53 L~t~~~f~dF~L~~e~k~~~~~NSGI~~r~~~~~~~~~~G~E~QIld~~~~~~~~~-~~~~~~GslY~~~~~~~~~~~kp 131 (214) T 3s5q_A 53 IWTKVQYENFILDLEFKTDVNTNSGVVIYCTDKGNWIPSSIEIQIADDHHPEWQSY-PEYWRCGSIYGHKGANEQLVVKK 131 (214) T ss_dssp EEESSCBCSEEEEEEEEECTTCEEEEEEEESCSTTCGGGSEEEEEECTTSGGGGGS-CGGGSTTSBTTTBCCSSSCCSCC T ss_pred EEECCeeccEEEEEEEEECCCCccEEEEEecCCCCCcceEEEEEEECCCCCccccc-CCCCceeeeccccCcccccccCC Confidence 3333335 99999999974 4677888877653111 01134444322100000 0 000001110000000 0011123 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290330 155 PDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1023) Q Consensus 155 dg~WHrlaLsV~~~~VtLyVDC~~~~t~ 182 (1023) .++|+++.|.|.+++|++|||-.++... T Consensus 132 ~geWn~~~I~~~g~~i~v~lNG~~v~~~ 159 (214) T 3s5q_A 132 PGEWNRMIITAKGQQIDIELNGKHIVSA 159 (214) T ss_dssp TTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred CCceEEEEEEEECCEEEEEECCEEEEEE Confidence 6899999999999999999999998764