Query FBpp0305286 type=protein; loc=3L:13966816..13968495; ID=FBpp0305286; name=Nxf3-PB; parent=FBgn0263232,FBtr0333073; dbxref=REFSEQ:NP_729938,GB_protein:AAN11817,FlyBase:FBpp0305286,FlyBase_Annotation_IDs:CG32135-PB; MD5=631c54815c4d35311890efd898d914cf; length=559; release=r6.06; species=Dmel; Match_columns 559 No_of_seqs 491 out of 3739 Neff 7.6 Searched_HMMs 35384 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 4wyk_A Nuclear RNA export fact 100.0 3.4E-57 9.7E-62 489.8 17.9 419 10-437 12-448 (461) 2 4wwu_A MRNA export factor MEX6 100.0 3.5E-49 1E-53 428.4 7.2 407 12-437 12-474 (488) 3 3rw6_A Nuclear RNA export fact 100.0 6.6E-30 1.9E-34 257.7 16.0 242 10-259 11-261 (267) 4 4xm4_A MEX67; nuclear transpor 100.0 2E-31 5.6E-36 282.3 2.7 321 114-437 13-378 (386) 5 3nv0_A Nuclear RNA export fact 99.9 1.8E-22 5E-27 195.1 4.9 171 273-448 2-196 (205) 6 1q40_B MEX67, mRNA export fact 99.8 2.7E-21 7.6E-26 187.9 10.3 162 274-437 4-212 (219) 7 1of5_A MRNA export factor MEX6 99.8 4.6E-21 1.3E-25 186.3 10.0 159 276-437 3-206 (221) 8 1jkg_B TAP; NTF2-like domain, 99.8 6.9E-21 2E-25 189.5 10.9 166 271-437 2-173 (250) 9 4x2h_A Putative mRNA export pr 99.8 6.1E-20 1.7E-24 175.7 3.9 164 269-436 4-192 (193) 10 1ozn_A Reticulon 4 receptor; N 99.7 2.6E-17 7.4E-22 166.1 11.6 220 94-346 17-244 (285) 11 4qxf_A Leucine-rich repeat-con 99.7 3.5E-17 9.9E-22 166.3 11.6 217 101-342 25-263 (301) 12 4v2d_A FLRT2, fibronectin leuc 99.7 6.5E-17 1.8E-21 166.3 11.9 238 95-347 14-285 (326) 13 3zyj_A Leucine-rich repeat-con 99.7 9E-17 2.6E-21 172.5 12.6 232 94-349 49-301 (440) 14 3zyi_A Leucine-rich repeat-con 99.7 9.4E-17 2.7E-21 172.8 12.1 233 94-350 60-313 (452) 15 2id5_A Lingo-1, leucine rich r 99.7 3.6E-17 1E-21 177.2 6.3 174 94-278 17-207 (477) 16 2z66_A Variable lymphocyte rec 99.7 6.7E-17 1.9E-21 164.6 7.8 162 95-276 14-180 (306) 17 2z62_A TOLL-like receptor 4, v 99.7 1.4E-16 4.1E-21 159.9 9.9 218 94-344 13-241 (276) 18 4p8s_A Reticulon-4 receptor-li 99.7 3E-16 8.6E-21 157.9 10.9 213 100-346 23-242 (282) 19 4v2e_A FLRT3, fibronectin leuc 99.7 4.9E-16 1.4E-20 159.9 12.6 238 94-346 15-286 (331) 20 1p9a_G Platelet glycoprotein I 99.7 8.8E-16 2.5E-20 155.8 14.1 185 144-351 31-219 (290) 21 2o6q_A Variable lymphocyte rec 99.6 1.1E-15 3.1E-20 153.1 14.4 181 144-344 37-222 (270) 22 2z80_A TOLL-like receptor 2, v 99.6 2.9E-16 8.1E-21 163.4 8.4 220 100-343 43-317 (353) 23 4r58_A Leucine rich repeat pro 99.6 3.3E-15 9.3E-20 144.8 15.2 186 134-350 31-218 (220) 24 4pq8_A Designed protein OR465; 99.6 3E-15 8.4E-20 150.0 14.9 177 143-341 69-250 (271) 25 4qxf_A Leucine-rich repeat-con 99.6 1.1E-15 3.2E-20 155.2 12.0 158 140-317 101-261 (301) 26 4pq8_A Designed protein OR465; 99.6 1.5E-15 4.2E-20 152.2 12.1 183 136-342 40-227 (271) 27 4qxe_A Leucine-rich repeat-con 99.6 4.7E-16 1.3E-20 166.6 8.9 214 95-340 19-237 (443) 28 1ozn_A Reticulon 4 receptor; N 99.6 2E-15 5.8E-20 152.2 13.1 181 142-342 30-216 (285) 29 3rfs_A Internalin B, repeat mo 99.6 6.8E-15 1.9E-19 147.3 16.1 186 135-344 32-222 (272) 30 4ufr_A Leucine-rich repeat-con 99.6 5.5E-16 1.6E-20 167.7 8.8 215 94-340 23-242 (484) 31 4kt1_A Leucine-rich repeat-con 99.6 6.6E-16 1.9E-20 168.5 8.6 214 95-340 18-236 (504) 32 4r5c_A Leucine rich repeat pro 99.6 3.7E-15 1E-19 151.3 13.5 182 140-344 80-265 (304) 33 4qdh_A Variable lymphocyte rec 99.6 3.4E-16 9.5E-21 167.7 5.6 230 94-341 20-302 (438) 34 4tzh_A LIC12234; LRR protein, 99.6 5.2E-15 1.5E-19 140.1 13.2 159 167-343 11-172 (190) 35 3v47_A TOLL-like receptor 5B a 99.6 1.8E-16 5E-21 170.3 3.4 54 286-341 282-337 (455) 36 3m19_A Variable lymphocyte rec 99.6 7.8E-15 2.2E-19 145.3 14.8 162 174-349 35-202 (251) 37 2xwt_C Thyrotropin receptor; s 99.6 4.5E-16 1.3E-20 153.0 5.7 203 101-337 24-236 (239) 38 4kng_A Leucine-rich repeat-con 99.6 1.2E-15 3.4E-20 167.5 9.1 215 94-340 22-241 (531) 39 2z62_A TOLL-like receptor 4, v 99.6 1.6E-15 4.6E-20 152.2 9.2 178 144-341 28-214 (276) 40 2z66_A Variable lymphocyte rec 99.6 6.2E-16 1.8E-20 157.5 5.9 181 143-342 27-214 (306) 41 4y61_B SLIT and NTRK-like prot 99.6 4.5E-15 1.3E-19 149.1 10.5 165 171-350 59-229 (272) 42 3o53_A Protein LRIM1, AGAP0063 99.6 5.3E-15 1.5E-19 151.1 10.9 203 140-370 76-283 (317) 43 3zyj_A Leucine-rich repeat-con 99.6 2.6E-15 7.2E-20 161.2 8.7 177 143-341 63-245 (440) 44 2o6q_A Variable lymphocyte rec 99.6 6.9E-15 2E-19 147.2 11.2 181 105-317 34-218 (270) 45 4rcw_A SLIT and NTRK-like prot 99.6 1.1E-14 3.2E-19 142.9 12.3 163 171-348 32-200 (240) 46 4r5c_A Leucine rich repeat pro 99.6 1.9E-14 5.4E-19 146.1 14.4 180 140-342 58-241 (304) 47 4u7l_A LIG-1, leucine-rich rep 99.6 1.4E-15 3.9E-20 163.5 6.2 225 94-340 14-257 (456) 48 3zyi_A Leucine-rich repeat-con 99.6 3.4E-15 9.5E-20 160.7 8.7 176 144-341 75-256 (452) 49 4fcj_A RAS GTPase-activating p 99.6 2.4E-15 6.8E-20 136.9 6.2 131 277-434 5-139 (142) 50 3oja_B Anopheles plasmodium-re 99.6 1.1E-14 3.1E-19 162.3 12.1 178 140-341 95-315 (597) 51 1h6u_A Internalin H; cell adhe 99.6 2.1E-14 5.8E-19 146.6 12.9 175 137-342 34-210 (308) 52 4r6f_A Leucine rich repeat DLR 99.6 1.6E-14 4.6E-19 148.1 12.0 128 140-276 81-218 (331) 53 4r6f_A Leucine rich repeat DLR 99.5 3.3E-14 9.3E-19 145.8 13.7 179 140-340 59-250 (331) 54 4tzh_A LIC12234; LRR protein, 99.5 1.5E-14 4.2E-19 136.9 10.1 170 140-334 14-187 (190) 55 4rca_B SLIT and NTRK-like prot 99.5 1.2E-14 3.4E-19 143.8 9.8 164 171-349 36-205 (251) 56 4p8s_A Reticulon-4 receptor-li 99.5 3.7E-14 1E-18 142.6 13.2 179 142-342 30-214 (282) 57 1h6u_A Internalin H; cell adhe 99.5 3.8E-14 1.1E-18 144.6 13.4 172 140-342 59-232 (308) 58 4u7l_A LIG-1, leucine-rich rep 99.5 2.4E-14 6.7E-19 153.9 12.2 193 142-346 194-410 (456) 59 3o6n_A APL1; leucine-rich repe 99.5 3.1E-14 8.8E-19 149.4 12.4 178 140-341 89-309 (390) 60 1h6t_A Internalin B; cell adhe 99.5 3.7E-14 1.1E-18 143.8 12.5 176 136-342 38-215 (291) 61 3t6q_A CD180 antigen; protein- 99.5 1.9E-14 5.4E-19 160.3 11.0 146 94-261 18-165 (606) 62 1p9a_G Platelet glycoprotein I 99.5 3E-14 8.6E-19 144.5 11.5 181 100-316 22-207 (290) 63 1ziw_A TOLL-like receptor 3; i 99.5 6.3E-15 1.8E-19 166.6 7.1 236 94-340 10-285 (680) 64 3ujm_A Rasputin; NTF2-like fol 99.5 9.4E-15 2.6E-19 129.1 6.6 113 285-431 5-119 (120) 65 2id5_A Lingo-1, leucine rich r 99.5 3.4E-14 9.5E-19 153.8 11.5 109 141-259 101-210 (477) 66 4u06_A LIC10831; unknown funct 99.5 8.8E-14 2.5E-18 143.7 13.7 152 171-340 56-210 (344) 67 2v70_A SLIT-2, SLIT homolog 2 99.5 7.3E-14 2.1E-18 135.9 12.2 158 176-350 13-176 (220) 68 3v47_A TOLL-like receptor 5B a 99.5 1.2E-13 3.3E-18 148.3 14.9 184 140-340 99-360 (455) 69 4fcg_A Uncharacterized protein 99.5 1.3E-14 3.6E-19 149.9 6.9 98 173-276 103-211 (328) 70 4r5d_A Leucine rich repeat pro 99.5 1.3E-13 3.8E-18 147.0 15.0 178 142-341 61-243 (441) 71 4u06_A LIC10831; unknown funct 99.5 9.4E-14 2.6E-18 143.5 13.3 176 141-341 125-303 (344) 72 3wo9_A Variable lymphocyte rec 99.5 1.6E-13 4.4E-18 136.2 14.4 155 173-344 44-203 (248) 73 1xku_A Decorin; proteoglycan, 99.5 5.4E-14 1.5E-18 144.3 11.3 176 140-340 72-253 (330) 74 2xwt_C Thyrotropin receptor; s 99.5 1.2E-14 3.3E-19 142.9 6.0 178 145-342 32-220 (239) 75 3vq2_A TLR4, TOLL-like recepto 99.5 3.7E-14 1E-18 157.8 10.5 194 141-345 347-563 (606) 76 4u08_A LIC11098; LRR protein, 99.5 1.1E-13 3E-18 145.9 13.4 175 142-341 156-333 (398) 77 4r6g_A Leucine rich repeats DL 99.5 4.8E-14 1.4E-18 151.4 10.8 178 141-340 59-249 (464) 78 3rfs_A Internalin B, repeat mo 99.5 7.6E-14 2.1E-18 139.7 11.4 173 140-340 59-235 (272) 79 4r5d_A Leucine rich repeat pro 99.5 1.6E-13 4.5E-18 146.4 14.5 181 137-341 34-219 (441) 80 1jkg_A P15; NTF2-like domain, 99.5 2.2E-14 6.1E-19 130.3 6.5 115 285-434 15-138 (140) 81 2z63_A TOLL-like receptor 4, v 99.5 3.1E-14 8.7E-19 157.1 8.8 187 140-345 343-536 (570) 82 3oja_A Leucine-rich immune mol 99.5 6.6E-14 1.9E-18 152.4 11.1 201 140-368 76-281 (487) 83 1zo2_A NTF2, nuclear transport 99.5 1.7E-14 4.7E-19 129.2 5.2 114 284-432 12-127 (129) 84 4xa9_A GAla protein type 1, 3 99.5 8.7E-15 2.5E-19 148.2 3.6 208 110-340 22-247 (297) 85 4r58_A Leucine rich repeat pro 99.5 1.3E-13 3.6E-18 133.6 11.7 151 171-344 38-190 (220) 86 4fmz_A Internalin; leucine ric 99.5 1.4E-13 3.9E-18 142.4 12.6 96 171-276 152-248 (347) 87 3m19_A Variable lymphocyte rec 99.5 1.5E-13 4.1E-18 136.2 12.2 153 144-316 35-191 (251) 88 4xgo_A APL1B, anopheles plasmo 99.5 2.7E-13 7.5E-18 140.6 14.6 43 171-215 92-134 (356) 89 4fmz_A Internalin; leucine ric 99.5 1.4E-13 4E-18 142.3 12.5 210 110-352 112-336 (347) 90 4u08_A LIC11098; LRR protein, 99.5 1.7E-13 4.8E-18 144.3 13.3 175 142-341 179-356 (398) 91 2qiy_A UBP3-associated protein 99.5 3.3E-14 9.2E-19 131.2 6.7 134 283-436 11-151 (154) 92 4r6g_A Leucine rich repeats DL 99.5 4.3E-14 1.2E-18 151.9 8.7 183 140-341 80-274 (464) 93 1m9s_A Internalin B; cell inva 99.5 1.3E-13 3.6E-18 154.4 12.8 174 137-341 36-211 (605) 94 4ufr_A Leucine-rich repeat-con 99.5 1.4E-13 4E-18 148.8 12.7 187 147-353 41-233 (484) 95 4ezg_A Putative uncharacterize 99.5 3.7E-14 1.1E-18 134.7 7.2 147 173-340 43-194 (197) 96 4xgo_A APL1B, anopheles plasmo 99.5 5.3E-13 1.5E-17 138.4 16.3 173 143-340 94-285 (356) 97 3e6j_A Variable lymphocyte rec 99.5 3.1E-13 8.8E-18 132.3 13.8 152 175-344 20-176 (229) 98 4ay9_X Follicle-stimulating ho 99.5 2.2E-14 6.1E-19 149.5 5.7 201 100-337 21-233 (350) 99 4g8a_A TOLL-like receptor 4; l 99.5 5.7E-14 1.6E-18 157.5 9.5 84 172-259 395-479 (635) 100 4qdh_A Variable lymphocyte rec 99.5 6.9E-14 1.9E-18 149.7 9.2 161 170-344 211-378 (438) 101 4u09_A LIC12759, LIC12759; LRR 99.5 1.8E-13 5.1E-18 144.1 12.3 174 142-340 63-239 (401) 102 4v2d_A FLRT2, fibronectin leuc 99.5 6.6E-14 1.9E-18 143.8 8.6 120 144-276 28-150 (326) 103 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4E-18 139.6 10.7 149 171-342 43-193 (291) 104 2z80_A TOLL-like receptor 2, v 99.5 1.3E-13 3.7E-18 143.3 10.5 154 173-340 51-211 (353) 105 4kng_A Leucine-rich repeat-con 99.5 1.9E-13 5.3E-18 150.0 12.1 187 147-353 40-232 (531) 106 4qxe_A Leucine-rich repeat-con 99.5 2E-13 5.8E-18 146.1 11.9 182 139-341 76-262 (443) 107 2v9t_B SLIT homolog 2 protein 99.5 3.2E-13 9.1E-18 131.4 12.0 154 177-348 14-173 (220) 108 2z81_A CD282 antigen, TOLL-lik 99.5 3E-13 8.5E-18 148.4 13.1 180 142-347 332-517 (549) 109 4y61_B SLIT and NTRK-like prot 99.4 3.4E-13 9.5E-18 135.5 11.8 155 174-343 39-197 (272) 110 4l3f_A Internalin K, LMO1290 p 99.4 5.4E-14 1.5E-18 146.7 6.1 178 137-342 50-231 (347) 111 4k5u_B Variable lymphocyte rec 99.4 7.5E-13 2.1E-17 128.7 13.6 155 177-348 12-172 (220) 112 1gy7_A Nuclear transport facto 99.4 6.9E-14 1.9E-18 124.5 5.7 115 284-433 6-123 (125) 113 3oja_B Anopheles plasmodium-re 99.4 4.5E-13 1.3E-17 149.3 13.6 131 142-283 73-204 (597) 114 4u09_A LIC12759, LIC12759; LRR 99.4 5.4E-13 1.5E-17 140.5 13.5 174 142-340 155-331 (401) 115 4v2e_A FLRT3, fibronectin leuc 99.4 2.4E-13 6.9E-18 139.7 10.5 149 174-340 76-232 (331) 116 4kt1_A Leucine-rich repeat-con 99.4 3.3E-13 9.3E-18 147.1 12.1 187 147-353 35-227 (504) 117 3j0a_A TOLL-like receptor 5; m 99.4 7.2E-14 2E-18 162.1 7.2 149 94-261 10-160 (844) 118 4l3a_A Internalin K, LMO1290 p 99.4 4.8E-14 1.3E-18 157.5 5.5 149 172-341 77-230 (590) 119 1ziw_A TOLL-like receptor 3; i 99.4 1.5E-13 4.3E-18 155.3 9.7 184 141-342 402-599 (680) 120 2o6s_A Variable lymphocyte rec 99.4 2.7E-13 7.6E-18 130.1 9.8 147 174-340 28-178 (208) 121 1gy6_A Nuclear transport facto 99.4 6.5E-14 1.8E-18 125.0 5.1 115 284-434 8-124 (127) 122 3nv0_B NTF2-related export pro 99.4 8.4E-14 2.4E-18 128.2 6.0 112 285-432 35-153 (154) 123 1xku_A Decorin; proteoglycan, 99.4 4.9E-13 1.4E-17 137.1 12.2 173 144-341 52-230 (330) 124 2ft3_A Biglycan; proteoglycan, 99.4 3.7E-13 1E-17 138.1 11.2 199 105-340 51-254 (332) 125 4glp_A Monocyte differentiatio 99.4 3.3E-13 9.4E-18 137.3 10.7 182 141-341 114-308 (310) 126 4glp_A Monocyte differentiatio 99.4 3.5E-14 9.8E-19 144.6 2.9 34 305-340 251-285 (310) 127 4cnm_A Trophoblast glycoprotei 99.4 1.2E-13 3.5E-18 140.0 6.9 186 144-348 35-249 (299) 128 4fcg_A Uncharacterized protein 99.4 1.8E-13 5.2E-18 141.3 8.3 153 171-341 78-243 (328) 129 2xot_A Amphoterin-induced prot 99.4 2.4E-13 6.9E-18 142.1 9.3 162 174-347 39-209 (361) 130 4ay9_X Follicle-stimulating ho 99.4 9E-14 2.5E-18 144.8 5.9 201 143-367 29-241 (350) 131 1ogq_A PGIP-2, polygalacturona 99.4 1.4E-13 4E-18 140.4 7.1 153 171-340 122-281 (313) 132 1wwl_A Monocyte differentiatio 99.4 5.4E-13 1.5E-17 135.4 11.4 183 141-341 118-310 (312) 133 4g8a_A TOLL-like receptor 4; l 99.4 2.6E-13 7.3E-18 152.2 9.6 165 170-348 416-588 (635) 134 4bv4_R Protein TOLL, variable 99.4 2.5E-13 7E-18 145.2 9.0 181 141-340 144-328 (446) 135 2z7x_B TOLL-like receptor 1, v 99.4 1.3E-13 3.5E-18 150.9 6.7 87 246-340 321-412 (520) 136 2o6s_A Variable lymphocyte rec 99.4 6E-13 1.7E-17 127.7 10.7 147 143-316 27-177 (208) 137 4lsc_A Somatic embryogenesis r 99.4 2.2E-13 6.1E-18 132.9 7.7 155 172-342 49-209 (223) 138 2z7x_B TOLL-like receptor 1, v 99.4 4.5E-13 1.3E-17 146.5 11.0 159 172-345 322-486 (520) 139 4ezg_A Putative uncharacterize 99.4 8E-13 2.3E-17 125.5 11.3 154 138-317 38-194 (197) 140 3t6q_A CD180 antigen; protein- 99.4 4.1E-13 1.2E-17 149.6 10.4 182 142-340 323-513 (606) 141 3wo9_A Variable lymphocyte rec 99.4 1.3E-12 3.5E-17 129.6 12.7 125 174-312 66-193 (248) 142 4cil_A YOPM-CAP, internalin B; 99.4 1.2E-12 3.4E-17 132.0 12.8 148 171-341 61-210 (287) 143 4rca_B SLIT and NTRK-like prot 99.4 6.5E-13 1.8E-17 131.3 10.5 153 174-342 16-173 (251) 144 4lxr_A Protein TOLL; TLR, leuc 99.4 5.3E-13 1.5E-17 153.7 11.1 107 171-281 312-421 (783) 145 3wn4_A TOLL-like receptor 8; l 99.4 4.3E-13 1.2E-17 154.6 10.2 171 170-345 558-758 (811) 146 4xa9_A GAla protein type 1, 3 99.4 1.4E-14 4E-19 146.7 -2.0 176 143-340 42-223 (297) 147 1wwl_A Monocyte differentiatio 99.4 1.8E-13 5.1E-18 138.9 6.0 157 172-342 119-289 (312) 148 4rcw_A SLIT and NTRK-like prot 99.4 9.2E-13 2.6E-17 129.3 10.8 151 175-341 13-168 (240) 149 4j0m_A Serine/threonine-protei 99.4 2.9E-13 8.2E-18 154.8 7.8 108 171-283 423-535 (740) 150 1ogq_A PGIP-2, polygalacturona 99.4 2.5E-13 7E-18 138.6 6.5 183 140-344 121-308 (313) 151 3vq2_A TLR4, TOLL-like recepto 99.4 5.3E-13 1.5E-17 148.5 9.7 102 171-276 53-158 (606) 152 4lxr_A Protein TOLL; TLR, leuc 99.4 4.3E-13 1.2E-17 154.4 9.1 84 172-259 192-276 (783) 153 4bv4_R Protein TOLL, variable 99.4 2.3E-12 6.6E-17 137.6 14.1 188 142-342 192-402 (446) 154 4nkh_A E3 ubiquitin-protein li 99.4 4.7E-12 1.3E-16 124.4 14.9 156 144-341 57-215 (239) 155 4l3a_A Internalin K, LMO1290 p 99.4 6.6E-13 1.9E-17 148.2 9.6 177 138-341 73-252 (590) 156 1xeu_A Internalin C; cellular 99.4 1E-12 2.9E-17 131.5 10.0 120 139-276 36-155 (263) 157 2z63_A TOLL-like receptor 4, v 99.4 7.8E-13 2.2E-17 145.8 10.0 156 171-340 49-213 (570) 158 3rgz_A Protein brassinosteroid 99.4 4.8E-13 1.4E-17 153.7 8.3 108 171-283 439-550 (768) 159 3o6n_A APL1; leucine-rich repe 99.4 2.1E-12 5.8E-17 135.5 12.4 150 171-342 90-241 (390) 160 4l3f_A Internalin K, LMO1290 p 99.4 2.2E-13 6.1E-18 142.1 4.7 155 171-346 54-213 (347) 161 1m9s_A Internalin B; cell inva 99.4 7.8E-13 2.2E-17 148.1 9.2 161 171-354 40-202 (605) 162 3o53_A Protein LRIM1, AGAP0063 99.4 5.9E-13 1.7E-17 135.8 7.5 153 171-340 55-227 (317) 163 2z81_A CD282 antigen, TOLL-lik 99.4 1.9E-12 5.4E-17 142.1 11.9 153 174-340 26-185 (549) 164 4k5u_B Variable lymphocyte rec 99.4 2.6E-12 7.4E-17 124.8 11.5 104 171-278 51-157 (220) 165 2v70_A SLIT-2, SLIT homolog 2 99.4 2.7E-12 7.7E-17 124.8 11.6 129 174-316 32-165 (220) 166 4cil_A YOPM-CAP, internalin B; 99.4 3.4E-12 9.5E-17 128.7 12.7 146 174-342 42-189 (287) 167 3e6j_A Variable lymphocyte rec 99.4 3.3E-12 9.3E-17 125.0 12.2 125 174-312 40-166 (229) 168 2ft3_A Biglycan; proteoglycan, 99.4 3E-12 8.6E-17 131.2 12.1 174 144-343 54-233 (332) 169 4mn8_A LRR receptor-like serin 99.4 8.2E-13 2.3E-17 152.1 8.2 191 141-354 93-293 (782) 170 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.9E-12 8.3E-17 141.0 12.1 158 172-344 351-514 (562) 171 2v9t_B SLIT homolog 2 protein 99.3 2.9E-12 8.1E-17 124.6 10.6 99 174-276 32-133 (220) 172 3bz5_A Internalin-J, INLJ; leu 99.3 6E-12 1.7E-16 135.9 14.2 173 140-341 60-247 (457) 173 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.1E-12 8.7E-17 140.8 11.7 114 102-238 45-160 (562) 174 3rgz_A Protein brassinosteroid 99.3 1.5E-12 4.2E-17 149.7 9.5 109 142-261 440-550 (768) 175 1o6v_A Internalin A; cell adhe 99.3 6.6E-12 1.9E-16 135.3 14.0 148 171-341 196-345 (466) 176 1xeu_A Internalin C; cellular 99.3 4.7E-12 1.3E-16 126.6 11.9 147 171-341 38-186 (263) 177 4q62_A Leucine-rich repeat-and 99.3 1.1E-12 3E-17 139.5 7.5 180 140-340 31-224 (422) 178 3wn4_A TOLL-like receptor 8; l 99.3 5.1E-12 1.4E-16 145.7 13.6 133 197-341 559-704 (811) 179 4q62_A Leucine-rich repeat-and 99.3 7.6E-13 2.1E-17 140.6 6.0 62 142-215 61-122 (422) 180 3cvr_A Invasion plasmid antige 99.3 4.7E-12 1.3E-16 140.7 12.3 161 142-341 77-244 (571) 181 4xos_A Acidic leucine-rich nuc 99.3 4.3E-12 1.2E-16 115.4 9.9 125 170-312 16-150 (152) 182 4mn8_A LRR receptor-like serin 99.3 1.7E-12 4.8E-17 149.5 8.8 192 140-354 116-317 (782) 183 2ell_A Acidic leucine-rich nuc 99.3 5.1E-12 1.4E-16 116.5 10.2 135 168-320 18-163 (168) 184 3oja_A Leucine-rich immune mol 99.3 2.7E-12 7.5E-17 139.7 9.7 169 141-341 55-228 (487) 185 4hq1_A Probable receptor prote 99.3 2.5E-12 7.2E-17 139.3 9.3 177 140-340 84-268 (475) 186 4eco_A Uncharacterized protein 99.3 5.9E-13 1.7E-17 149.9 4.4 157 171-341 350-527 (636) 187 1o6v_A Internalin A; cell adhe 99.3 1.1E-11 3.1E-16 133.6 14.1 171 142-343 197-369 (466) 188 4lsc_A Somatic embryogenesis r 99.3 7E-13 2E-17 129.3 4.1 155 143-320 50-210 (223) 189 4j0m_A Serine/threonine-protei 99.3 3E-12 8.3E-17 146.4 9.8 221 143-377 425-714 (740) 190 4cnm_A Trophoblast glycoprotei 99.3 2.7E-12 7.6E-17 130.1 8.4 174 94-285 20-216 (299) 191 2xot_A Amphoterin-induced prot 99.3 2.5E-12 7E-17 134.5 8.2 133 145-287 40-179 (361) 192 3wpc_A TOLL-like receptor 9; l 99.3 6.4E-12 1.8E-16 144.7 12.4 64 142-212 473-536 (802) 193 3wpc_A TOLL-like receptor 9; l 99.3 5.9E-12 1.7E-16 145.1 12.0 162 171-340 99-300 (802) 194 3j0a_A TOLL-like receptor 5; m 99.3 3.3E-12 9.3E-17 148.2 9.6 168 142-320 288-520 (844) 195 4nkh_A E3 ubiquitin-protein li 99.3 1.2E-11 3.5E-16 121.5 12.2 133 174-341 57-192 (239) 196 3bz5_A Internalin-J, INLJ; leu 99.3 2E-11 5.7E-16 131.8 13.9 191 139-346 143-358 (457) 197 4ecn_A Leucine-rich repeat pro 99.3 4.5E-12 1.3E-16 147.5 8.9 107 142-261 546-656 (876) 198 4eco_A Uncharacterized protein 99.3 4.4E-12 1.2E-16 142.8 8.5 155 169-341 201-391 (636) 199 4mn8_B Brassinosteroid insensi 99.3 8.2E-12 2.3E-16 122.4 8.7 131 174-320 68-203 (226) 200 4cp6_A Choline binding protein 99.3 9.7E-12 2.8E-16 133.8 9.4 151 170-339 183-374 (445) 201 4arn_A TOLL receptor, variable 99.3 6.3E-12 1.8E-16 126.4 7.5 127 143-276 69-199 (279) 202 3cvr_A Invasion plasmid antige 99.3 1.7E-11 4.8E-16 136.2 11.3 155 145-341 60-221 (571) 203 2ell_A Acidic leucine-rich nuc 99.3 7.5E-12 2.1E-16 115.3 7.1 133 142-295 22-163 (168) 204 1jl5_A Outer protein YOPM; leu 99.2 1.3E-11 3.8E-16 133.1 9.7 20 103-122 86-105 (454) 205 4arn_A TOLL receptor, variable 99.2 2.7E-11 7.6E-16 121.8 11.4 156 172-344 68-235 (279) 206 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 3.8E-16 115.0 8.5 99 171-276 16-118 (176) 207 4mn8_B Brassinosteroid insensi 99.2 1.9E-11 5.5E-16 119.7 10.0 129 144-283 68-199 (226) 208 4ecn_A Leucine-rich repeat pro 99.2 5.6E-12 1.6E-16 146.6 7.1 154 170-340 444-632 (876) 209 4hq1_A Probable receptor prote 99.2 1.2E-11 3.4E-16 134.0 8.8 175 143-340 63-245 (475) 210 3g06_A SSPH2 (leucine-rich rep 99.2 2.8E-11 7.8E-16 136.0 11.2 34 304-340 240-274 (622) 211 1w8a_A SLIT protein; signaling 99.2 6.8E-11 1.9E-15 112.4 10.5 79 177-261 11-90 (192) 212 4b8c_D Glucose-repressible alc 99.2 1.7E-11 4.9E-16 139.7 7.6 181 140-342 192-376 (727) 213 3g06_A SSPH2 (leucine-rich rep 99.2 5.8E-11 1.6E-15 133.4 11.5 184 105-341 58-255 (622) 214 4xos_A Acidic leucine-rich nuc 99.2 3.2E-11 8.9E-16 109.6 7.0 126 142-278 18-150 (152) 215 2wfh_A SLIT homolog 2 protein 99.2 1E-10 2.9E-15 111.4 10.7 92 177-276 13-107 (193) 216 4cp6_A Choline binding protein 99.2 3.6E-11 1E-15 129.4 8.2 155 168-340 204-399 (445) 217 1a9n_A U2A', U2A'; complex (nu 99.2 4.1E-11 1.2E-15 111.7 7.5 126 139-276 14-145 (176) 218 1jl5_A Outer protein YOPM; leu 99.2 1.1E-10 3.2E-15 125.8 11.7 92 171-276 150-242 (454) 219 3sb4_A Hypothetical leucine ri 99.2 2.7E-11 7.6E-16 124.2 6.1 153 173-341 100-311 (329) 220 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 3.8E-15 110.7 10.5 105 174-283 31-138 (193) 221 4q3i_A Osserk2 D128N; leucine 99.2 3.4E-11 9.6E-16 119.1 6.6 136 172-343 44-182 (244) 222 2o6r_A Variable lymphocyte rec 99.1 2.1E-10 6E-15 107.1 11.5 108 173-284 27-137 (177) 223 4b8c_D Glucose-repressible alc 99.1 3E-11 8.4E-16 137.8 6.7 177 143-341 172-355 (727) 224 4puf_A E3 ubiquitin-protein li 99.1 7.1E-11 2E-15 133.0 9.7 151 105-281 68-228 (637) 225 4ow2_A YOP effector YOPM; leuc 99.1 8E-11 2.3E-15 126.8 9.6 24 100-123 50-73 (448) 226 1dce_A Protein (RAB geranylger 99.1 4.6E-11 1.3E-15 132.0 6.3 93 175-276 442-538 (567) 227 1w8a_A SLIT protein; signaling 99.1 2.6E-10 7.4E-15 108.3 10.6 136 201-349 9-148 (192) 228 4gt6_A Cell surface protein; l 99.1 2.9E-11 8.2E-16 127.3 4.3 173 141-337 84-275 (394) 229 2o6r_A Variable lymphocyte rec 99.1 3.3E-10 9.4E-15 105.8 11.1 131 175-344 8-141 (177) 230 4q3i_A Osserk2 D128N; leucine 99.1 1.1E-10 3.2E-15 115.3 7.4 107 198-317 44-155 (244) 231 1z7x_W Ribonuclease inhibitor; 99.1 2.5E-11 7E-16 130.1 1.9 116 144-261 170-296 (461) 232 2ca6_A RAN GTPase-activating p 99.1 1.1E-10 3E-15 122.1 6.5 164 171-340 91-287 (386) 233 4fs7_A Uncharacterized protein 99.1 8.5E-11 2.4E-15 123.7 5.6 151 169-339 157-331 (394) 234 2ca6_A RAN GTPase-activating p 99.1 2.8E-11 7.9E-16 126.6 1.5 195 142-343 92-319 (386) 235 4fdw_A Leucine rich hypothetic 99.1 3.7E-10 1E-14 120.0 10.0 100 169-276 175-276 (401) 236 4fs7_A Uncharacterized protein 99.1 1.3E-10 3.8E-15 122.2 6.4 149 170-336 181-352 (394) 237 1z7x_W Ribonuclease inhibitor; 99.1 4.6E-11 1.3E-15 127.9 2.9 160 175-340 86-269 (461) 238 4gt6_A Cell surface protein; l 99.1 9.6E-11 2.7E-15 123.3 5.2 107 141-261 111-217 (394) 239 4ow2_A YOP effector YOPM; leuc 99.1 9.2E-10 2.6E-14 118.5 12.8 74 174-261 98-172 (448) 240 1ds9_A Outer arm dynein; leuci 99.0 5.7E-12 1.6E-16 120.0 -4.2 134 141-292 15-153 (198) 241 3un9_A NLR family member X1; l 99.0 2.1E-11 5.8E-16 128.1 -0.7 189 143-340 71-283 (372) 242 4per_A Ribonuclease inhibitor; 99.0 8.9E-11 2.5E-15 125.4 4.0 15 172-186 167-181 (460) 243 4fdw_A Leucine rich hypothetic 99.0 1.4E-10 4E-15 123.2 5.3 150 170-340 154-312 (401) 244 3sb4_A Hypothetical leucine ri 99.0 2.6E-10 7.2E-15 116.9 6.4 168 143-334 100-328 (329) 245 3g39_A Variable lymphocyte rec 99.0 1.6E-09 4.6E-14 100.9 10.9 102 176-284 11-115 (170) 246 4k17_A Leucine-rich repeat-con 99.0 1.9E-10 5.3E-15 129.8 5.0 115 142-261 364-499 (669) 247 4puf_A E3 ubiquitin-protein li 99.0 1.9E-09 5.4E-14 121.3 13.1 139 174-340 92-231 (637) 248 3goz_A Leucine-rich repeat-con 99.0 1.2E-10 3.4E-15 121.0 2.8 189 144-340 80-297 (362) 249 4k17_A Leucine-rich repeat-con 99.0 3.3E-10 9.4E-15 127.8 6.1 182 145-338 307-525 (669) 250 3goz_A Leucine-rich repeat-con 99.0 1E-10 2.9E-15 121.5 1.6 187 145-340 52-266 (362) 251 4h09_A Hypothetical leucine ri 99.0 1.8E-09 5.1E-14 112.8 10.4 152 169-337 153-343 (379) 252 3g39_A Variable lymphocyte rec 99.0 2.7E-09 7.7E-14 99.4 10.4 85 174-262 30-115 (170) 253 4h09_A Hypothetical leucine ri 99.0 7E-10 2E-14 116.0 6.9 115 211-340 204-322 (379) 254 2ast_B S-phase kinase-associat 99.0 3.2E-10 9E-15 116.2 4.1 179 142-337 91-282 (336) 255 2r9u_A Variable lymphocyte rec 98.9 3.6E-09 1E-13 98.8 10.9 102 176-284 14-118 (174) 256 2ast_B S-phase kinase-associat 98.9 5.7E-10 1.6E-14 114.3 5.9 181 140-340 114-306 (336) 257 4per_A Ribonuclease inhibitor; 98.9 2.9E-10 8.2E-15 121.4 2.6 17 171-187 52-68 (460) 258 1ds9_A Outer arm dynein; leuci 98.9 1.4E-11 3.8E-16 117.4 -7.1 132 170-317 14-153 (198) 259 4x2h_B Putative uncharacterize 98.9 1.3E-09 3.8E-14 102.1 6.4 124 285-431 6-182 (183) 260 3un9_A NLR family member X1; l 98.9 1.2E-10 3.5E-15 122.2 -2.1 163 171-340 69-252 (372) 261 2r9u_A Variable lymphocyte rec 98.9 6.9E-09 2E-13 96.9 9.7 85 174-262 33-118 (174) 262 4kxf_K NLR family CARD domain- 98.9 6.8E-10 1.9E-14 131.1 2.9 190 142-340 761-978 (1024) 263 4kxf_K NLR family CARD domain- 98.9 1.7E-09 4.8E-14 127.8 6.2 108 171-283 736-860 (1024) 264 4wp6_A MRNA export protein; LR 98.8 2.8E-09 7.8E-14 99.1 5.7 145 116-260 16-174 (183) 265 1dce_A Protein (RAB geranylger 98.8 5.7E-09 1.6E-13 115.2 8.9 117 145-276 442-565 (567) 266 2ra8_A Uncharacterized protein 98.8 6.4E-09 1.8E-13 108.8 7.2 159 170-340 135-320 (362) 267 1q42_A MTR2, mRNA transport re 98.8 1.7E-08 4.8E-13 95.3 7.9 144 284-456 26-197 (201) 268 2ifg_A High affinity nerve gro 98.7 3E-08 8.5E-13 102.6 8.2 86 171-261 28-115 (347) 269 4im6_A Nacht, LRR and PYD doma 98.7 7.8E-09 2.2E-13 98.6 2.7 110 175-284 54-180 (206) 270 4im6_A Nacht, LRR and PYD doma 98.7 7.3E-09 2.1E-13 98.8 2.4 112 169-282 19-149 (206) 271 2ifg_A High affinity nerve gro 98.6 9.5E-08 2.7E-12 98.8 9.8 99 179-284 13-116 (347) 272 4pbv_A NT-3 growth factor rece 98.6 1.2E-08 3.5E-13 101.4 3.0 83 174-261 35-119 (268) 273 4pbv_A NT-3 growth factor rece 98.6 1.3E-08 3.8E-13 101.1 2.5 105 143-256 34-139 (268) 274 2ra8_A Uncharacterized protein 98.6 1.1E-08 3E-13 107.2 1.0 184 142-340 137-343 (362) 275 1io0_A Tropomodulin; LRR prote 98.4 1.4E-07 4E-12 88.3 2.7 119 165-283 27-163 (185) 276 2p1m_B Transport inhibitor res 98.4 1E-07 3E-12 105.2 1.7 109 144-258 130-244 (594) 277 2p1m_B Transport inhibitor res 98.3 4.1E-08 1.2E-12 108.4 -2.0 60 143-209 288-347 (594) 278 4oju_A Hypothetical leucine ri 98.3 7.1E-07 2E-11 81.2 5.5 96 173-276 33-139 (148) 279 3rw6_A Nuclear RNA export fact 98.3 6.8E-08 1.9E-12 96.9 -2.1 85 174-261 141-232 (267) 280 4wp6_A MRNA export protein; LR 98.3 1E-07 2.9E-12 88.3 -1.0 97 176-276 27-141 (183) 281 4pki_G Gelsolin,tropomodulin-1 98.2 6.7E-07 1.9E-11 92.2 4.6 118 164-283 160-297 (324) 282 1io0_A Tropomodulin; LRR prote 98.2 6.5E-07 1.8E-11 83.8 3.7 120 141-262 33-164 (185) 283 3ogk_B Coronatine-insensitive 98.2 5E-07 1.4E-11 99.7 3.4 106 146-258 140-252 (592) 284 3ogk_B Coronatine-insensitive 98.2 6.6E-07 1.9E-11 98.7 3.5 72 143-216 163-236 (592) 285 1of5_B MTR2, YKL186C, mRNA tra 98.2 2.3E-06 6.6E-11 80.0 6.0 137 285-456 17-180 (184) 286 4oju_A Hypothetical leucine ri 98.1 2.5E-06 6.9E-11 77.6 5.1 84 168-260 61-145 (148) 287 4xm4_A MEX67; nuclear transpor 98.1 5.5E-07 1.5E-11 94.9 0.0 52 225-276 84-140 (386) 288 4pki_G Gelsolin,tropomodulin-1 98.0 3E-06 8.4E-11 87.3 4.7 120 141-262 167-298 (324) 289 4wyk_A Nuclear RNA export fact 98.0 1.1E-06 3.1E-11 95.1 1.4 79 197-276 168-257 (461) 290 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 7.4E-11 79.6 2.8 86 171-260 58-150 (176) 291 4nuz_A Endo-beta-N-acetylgluco 98.0 5.1E-06 1.5E-10 94.8 5.3 39 245-283 462-502 (899) 292 4nuz_A Endo-beta-N-acetylgluco 97.9 2.1E-06 5.8E-11 98.0 1.0 85 173-261 415-502 (899) 293 4wwu_A MRNA export factor MEX6 97.9 1.9E-06 5.4E-11 93.7 0.0 104 173-282 117-226 (488) 294 1pgv_A TMD-1, tropomodulin TMD 97.8 1.1E-05 3E-10 76.9 2.6 96 165-260 32-137 (197) 295 1pgv_A TMD-1, tropomodulin TMD 97.7 9.5E-06 2.7E-10 77.3 1.9 117 142-260 39-168 (197) 296 3rfe_A Platelet glycoprotein I 97.6 0.00013 3.6E-09 64.8 6.4 56 177-238 11-69 (130) 297 3e4g_A ATP synthase subunit S, 97.5 4.7E-05 1.3E-09 71.1 2.6 85 196-281 57-149 (176) 298 4i6j_B S-phase kinase-associat 97.5 3.1E-05 8.7E-10 81.9 1.1 15 325-339 357-371 (428) 299 3rfe_A Platelet glycoprotein I 96.9 0.0014 3.9E-08 58.1 6.2 55 203-261 11-67 (130) 300 4i6j_B S-phase kinase-associat 96.8 0.0021 6E-08 67.7 7.2 183 143-339 171-397 (428) 301 2lz0_A Uncharacterized protein 76.0 3.8 0.00011 33.8 4.8 37 220-258 15-52 (100) 302 2lz0_A Uncharacterized protein 66.6 11 0.00031 30.9 5.5 49 182-234 4-53 (100)No 1>4wyk_A Nuclear RNA export factor 1; nuclear export, transport protein; 3.40A {Homo sapiens} Probab=100.00 E-value=3.4e-57 Score=489.83 Aligned_cols=419 Identities=23% Similarity=0.361 Sum_probs=283.0 Q ss_pred cccccccCccccCcEEEEEcCCCccchhHHHHHHhHhc-cCcceeeeEEeecCCCCCCcceEEeecchhHHHHHHccccc Q FBpp0305286 10 STEEDHRVATVTGWSTVNIANCAGVSNSSIFVALKWVM-MPIKVEIFNFKRSGPEDNMARGQFLLDNLLSANRLKRLQEE 88 (559) Q Consensus 10 ~~~~~~~~~~~~~w~~v~i~~~~~~~~~~i~~~~~~~l-~P~~~v~~~y~~~~~~~~~~~~~F~v~~~~~a~alk~~~~~ 88 (559) -|..+++|++.++||||+||+|++|+|+|+++.++..+ +||+|++|||+++ ++.|||+|+.+|.++++|+++ T Consensus 12 ~~~~~~~~~~~~~w~~v~i~~~~~~~~~~l~~~i~~~~~~~f~p~~~~~~~~-------~~~f~v~~~~~a~~l~~~~~~ 84 (461) T 4wyk_A 12 GGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENT-------RAQFFVEDASTASALKAVNYK 84 (461) T ss_dssp -------------------------------------------------------------------------------- T ss_pred ccccccCCCCCCCeEEEEecCCCccCHHHHHHHHHHhCCCCceeeEEEEeCC-------eEEEEecCHHHHHHHHhcCCe Confidence 46788999999999999999999999999999998876 9999999999998 899999999999999999999 Q ss_pred eeccCCCceeEEEEcCCCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccc--cCCcchhhhHHHH Q FBpp0305286 89 VAVINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHF--CPLHMVKLLETVL 166 (559) Q Consensus 89 i~~~~~~~~i~l~v~p~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~--~~l~~~~~~~~~l 166 (559) |+. +++.++.+.+.+..++.+....++.+.++.|+.++.++|++.++.|||+++..++.|...+ ..++..+.+.+.+ T Consensus 85 i~~-~~~~ki~i~v~~~~~~~~~~~~l~~~~~~~l~~~l~~ry~~~~~~LdLs~l~~~p~L~~l~l~~~~N~~n~l~~~~ 163 (461) T 4wyk_A 85 ILD-RENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATL 163 (461) T ss_dssp -------------------------CCCHHHHHHHHHHHHHHEETTTTEEECTTTTTCHHHHHTTCCCCTTSHHHHHHHH T ss_pred eEc-CCCCeEEEEeccCCCCcchhcccCHHHHHHHHHHHhhccChhhcccchhhCCCChhHHhcCCcccccHHHHHHHHH Confidence 985 6899999999998888888888999999999999999999999999999999999888654 3556678888888 Q ss_pred HHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCc------c Q FBpp0305286 167 VLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKL------S 240 (559) Q Consensus 167 ~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~------~ 240 (559) ..+++++++|++|+|++|+|+.++++..++..+++|+.|+|++|+|++++++..+.+++|++|+|++|+++.. + T Consensus 164 ~~~~~~l~~L~~L~Ls~N~i~~l~~l~~~~~~l~~L~~L~Ls~N~I~~l~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 243 (461) T 4wyk_A 164 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY 243 (461) T ss_dssp HHHHHHCSCCCEEECTTSCCCCSGGGTTHHHHCTTCCEEECTTCCCCCGGGGGGGCSSCCSEEECTTCGGGGTCSSHHHH T ss_pred HHHHhhCCCceEEECCCCcccCccchHHHHhhCCCCCEEeCCCCCCCChhHhhhhccCCccEEEccCCCCCcccCcchhH Confidence 8887899999999999999999988655567899999999999999999777778878999999999999974 3 Q ss_pred hhHHhccCCCccEEeCCCCcC---CCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccccccee Q FBpp0305286 241 VDVIRKMLPQLKNVHGCVQLG---ESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMF 317 (559) Q Consensus 241 ~~~il~~lp~L~~Ldl~~N~~---~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~ 317 (559) ...++..||+|+.||+..... ...+....+|.++..+++++.+..+...|+++||..||. +++..|..+|.+++++ T Consensus 244 ~~~i~~~lp~L~~LDg~~v~~~e~~~~e~~~~lp~~~~~~~~~e~~~~~~~~Fl~~Yy~~~D~-~~R~~L~~~Y~~~S~f 322 (461) T 4wyk_A 244 ISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDS-GDRQGLLDAYHDGACC 322 (461) T ss_dssp HHHHHHHCTTCSEETTEECCCCCCCCCCCCCCCCCCCSCBCSSHHHHHHHHHHHHHHHHHHHS-SCGGGGGGTEEEEEEE T ss_pred HHHHHHhCccceeeCCcCcCchhhccccccccCCcccccccccHHHHHHHHHHHHHHHHHHhc-CCHhHHHHhhCcCcEE Confidence 355688999999999877532 233344567888999999998999999999999999996 3699999999999999 Q ss_pred eeecCCc-----CccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhhcCCCCCcCCCceeeeeEeecCCEEEEEEc Q FBpp0305286 318 SLSVPVQ-----LNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTSSLRIFTLT 392 (559) Q Consensus 318 sl~~~~~-----~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~~LP~t~h~lssl~vD~~~~~~~ll~itV~ 392 (559) +++.+.. ......|+..|||..+..+...+.+.+.+|..+|...|+++|.++|+++++.+|++...+++++|+|+ T Consensus 323 s~~~~~~~~~~~~~~~~~y~~~sRNl~~~~~~~~~~~~~~~G~~~I~~~l~~LP~t~h~~~~~~vD~~~~~~~~i~i~V~ 402 (461) T 4wyk_A 323 SLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVN 402 (461) T ss_dssp EEECCCCC---TTCTTHHHHTTCCCTTTCCCHHHHHHHSBCSHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEE T ss_pred EEecCCCCCCCCccchHHhhccCcCccccCChHHhHhHHhcCHHHHHHHHHHCCCCcccCcceEEEEEccCCCeEEEEEE Confidence 9998642 23456788999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEcCCCC-CCCcceeeeEEEEecCCCcEEEEccceEEeeCCCC Q FBpp0305286 393 GYFKEISSDT-LEPRRFQRTFVLQTSNSPGWLITNDMLCITSTMPD 437 (559) Q Consensus 393 G~f~e~~~~~-~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~~~~~~ 437 (559) |.|++.++.+ ...|+|+|||+|+|+++++|+|.||+|++++++.+ T Consensus 403 G~~~~~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~~~i~~~~~~ 448 (461) T 4wyk_A 403 GVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSE 448 (461) T ss_dssp EEEEECSSTTTTCEEEEEEEEEEEEEGGGEEEEEEEEEEEEECCHH T ss_pred eEEEEcCCCCCccceeEEEEEEEEECCCCeEEEEccEEEEECCCch Confidence 9999965432 47899999999999876789999999999999875No 2>4wwu_A MRNA export factor MEX67; mRNA nuclear export factor, transport protein; 3.30A {Saccharomyces cerevisiae} Probab=100.00 E-value=3.5e-49 Score=428.44 Aligned_cols=407 Identities=18% Similarity=0.261 Sum_probs=61.3 Q ss_pred cccccCccccCcEEEEEcCCCccchhHHHHHHhHhc-cCcceeeeEEeecCCCCCCcceEEeecchhHHHHHHcccccee Q FBpp0305286 12 EEDHRVATVTGWSTVNIANCAGVSNSSIFVALKWVM-MPIKVEIFNFKRSGPEDNMARGQFLLDNLLSANRLKRLQEEVA 90 (559) Q Consensus 12 ~~~~~~~~~~~w~~v~i~~~~~~~~~~i~~~~~~~l-~P~~~v~~~y~~~~~~~~~~~~~F~v~~~~~a~alk~~~~~i~ 90 (559) ....++++.++||||+||+|++|.++|+++.++..+ +|+++ +||+++ .+.|||+|+.+|++|++++++++ T Consensus 12 ~~~~~~~~~~~~~~v~i~~~~~~~~~~l~~~i~~~~~v~~~~--~~~~~~-------~~~f~V~~~~~A~~l~~~sg~~~ 82 (488) T 4wwu_A 12 NMMAQQQMQQNRIKISVRNWQNATMNDLINFISRNARVAVYD--AHVEGP-------LVIGYVNSKAEAESLMKWNGVRF 82 (488) T ss_dssp ------------CEEEEESCTTSCHHHHHHHHHHHSSCCCSS--EECCTT-------SEEEECSCHHHHHHHHHSCSCBC T ss_pred CcchhhcccCCcEEEEEeCCccCCHHHHHHHHHHhCCCceee--eEEECC-------EEEEEECCHHHHHHHHhccCccc Confidence 456788899999999999999999999999998887 78885 588877 99999999999999999999998 Q ss_pred ccCCCceeEEEEcCCCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCcccccc--ccCCcchhh-hHHHHH Q FBpp0305286 91 VINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLH--FCPLHMVKL-LETVLV 167 (559) Q Consensus 91 ~~~~~~~i~l~v~p~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~--~~~l~~~~~-~~~~l~ 167 (559) ++++.+|.+.+.|.. ..++.+.++.|+.++.+||++..+.|||+++..++.|... ...++..++ +..... T Consensus 83 -~~~~~~I~~~~~~~~------~~~~~~~~~~l~~~l~kry~~~~k~LDLS~~~~~~~L~~l~~l~~Lnl~~n~~~~l~~ 155 (488) T 4wwu_A 83 -AGSNLKFELLDDNGA------SAGTSDTISFLRGVLLKRYDPQTKLLNLGALHSDPELIQKGVFSSISTQSKMFPAMMK 155 (488) T ss_dssp -SSSBCEEEESCC------------------------------------------------------------------- T ss_pred -CCCceEEEEecCCCc------ccCCHHHHHHHHHHHHhhcccccCEEECcCCCCCccccccccccccchhhhhhhhhhh Confidence 456667766665522 2467889999999999999999999999998888777652 223332222 233444 Q ss_pred Hhh-ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC-CC-CccEEEeecCcCCCc--chh Q FBpp0305286 168 LSN-HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN-KL-SCKTIFLAGNGLAKL--SVD 242 (559) Q Consensus 168 ~i~-~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~-~l-~L~~L~L~~N~l~~~--~~~ 242 (559) ... ..+++|++|+|++|+|+.++++..+...+++|+.|+|++|+|+++.++..+. .+ +|++|+|++|+++.. +.. T Consensus 156 i~~l~~~~~L~~L~Ls~N~I~~l~~l~~l~~~lp~L~~LdLs~N~I~~l~~l~~l~~~l~~L~~L~L~~Npl~~~~~yr~ 235 (488) T 4wwu_A 156 LASTEKSLIVESVNLADNQLKDISAISTLAQTFPNLKNLCLANNQIFRFRSLEVWKNKFKDLRELLMTNNPITTDKLYRT 235 (488) T ss_dssp -------------------------------------------------------------------------------- T ss_pred hhhhccCCCCCEEECCCCcCCCCcchhhhhHhhCCCCEEECCCCCCCCchhHHHHhhcCCCCCEEEeeCCCCcCCcchhH Confidence 443 5678999999999999999887666567889999999999999998776777 47 999999999999874 334 Q ss_pred HHhccCCCccEEeCCCCcCC-CchhccCCC-CcccccCCCCCCccchhhhhhhhcccccCccccccccccccccceeeee Q FBpp0305286 243 VIRKMLPQLKNVHGCVQLGE-STEAVDNIP-KSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLS 320 (559) Q Consensus 243 ~il~~lp~L~~Ldl~~N~~~-~~~~~~~lp-~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~ 320 (559) .++..+|+|+.||+...... ..++-..+| ..+..+++++.+..+...|+++|+..||. ++..|..+|.++++++++ T Consensus 236 ~i~~~lp~L~~LDg~~v~~~er~~ae~~~P~~~k~~~~~se~~~~i~~~Fl~~Yy~~~D~--dR~~L~~~Y~~~S~fS~~ 313 (488) T 4wwu_A 236 EMLRLFPKLVVLDNVIVRDEQKLQTVYSLPMKIQQFFFENDALGQSSTDFATNFLNLWDN--NREQLLNLYSPQSQFSVS 313 (488) T ss_dssp -------------------------------------------------------------------------------- T ss_pred HHHhhCCCCEEECCccCCcHHhhccccccccccccccccchhhhhHHHHHHHHHHHHHhc--CHhhhHhhcCCCCeEEEe Confidence 46899999999999876322 112222344 34777889998999999999999999998 899999999999999998 Q ss_pred cCCc-----------CccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhhcCCCCCcCC----CceeeeeEeec-C Q FBpp0305286 321 VPVQ-----------LNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRLPLMHTDL----ENVGLDIQVFT-S 384 (559) Q Consensus 321 ~~~~-----------~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~~LP~t~h~l----ssl~vD~~~~~-~ 384 (559) .+.. ....-.|+..|||..+..+...|.+.+.+|..+|...|++||.|+|++ +++.+|+++.. . T Consensus 314 ~~~~~p~~~~~~~~~~~~~~~Y~~~sRNl~~~~d~~~r~~~l~~G~~~I~~~l~~LP~t~H~i~~~~~~~~vD~~~~~~~ 393 (488) T 4wwu_A 314 VDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQI 393 (488) T ss_dssp -------------------------------------------------------------------------------- T ss_pred ccCCCCcccccccccccchHhhhhhcccccccCCHHHHHHHHhhCHHHHHHHHHHCCCceECCcCCCceEEEEEEecCCC Confidence 8421 224567889999999999999999999999999999999999999999 57899999654 4 Q ss_pred CEEEEEEcCceEEcCCCC-----------------------------CCCcceeeeEEEEecCCCcEEEEccceEEeeCC Q FBpp0305286 385 SLRIFTLTGYFKEISSDT-----------------------------LEPRRFQRTFVLQTSNSPGWLITNDMLCITSTM 435 (559) Q Consensus 385 ~ll~itV~G~f~e~~~~~-----------------------------~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~~~~ 435 (559) .+++|+|+|.|+|.+... ...|+|+|||+|+|. +++|+|.||+|+||+++ T Consensus 394 ~~i~i~V~G~f~e~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~F~rtFvL~p~-~~~~~I~nD~l~ir~~~ 472 (488) T 4wwu_A 394 NGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYS 472 (488) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CeEEEEEEEEEEECCCCccccccccccccccccccccccccccccccccCceEEEEEEEEEC-CCeEEEEeceEEEeCCC Confidence 678999999999875210 027999999999995 67899999999999998 Q ss_pred CC Q FBpp0305286 436 PD 437 (559) Q Consensus 436 ~~ 437 (559) +. T Consensus 473 ~~ 474 (488) T 4wwu_A 473 TG 474 (488) T ss_dssp -- T ss_pred CC Confidence 64No 3>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Probab=99.97 E-value=6.6e-30 Score=257.65 Aligned_cols=242 Identities=21% Similarity=0.336 Sum_probs=199.7 Q ss_pred cccccccCccccCcEEEEEcCCCccchhHHHHHHhHhc-cCcceeeeEEeecCCCCCCcceEEeecchhHHHHHHccccc Q FBpp0305286 10 STEEDHRVATVTGWSTVNIANCAGVSNSSIFVALKWVM-MPIKVEIFNFKRSGPEDNMARGQFLLDNLLSANRLKRLQEE 88 (559) Q Consensus 10 ~~~~~~~~~~~~~w~~v~i~~~~~~~~~~i~~~~~~~l-~P~~~v~~~y~~~~~~~~~~~~~F~v~~~~~a~alk~~~~~ 88 (559) -|..+++|++..+||||+||+|++|+|+|+++.+++++ +|++|++|||+++ +|.|||++...|.++.+|.+. T Consensus 11 ~~~~~~~~~~~~~w~kv~i~~g~~~dk~~ll~~i~~~~~~~~~p~~~~~~~~-------~a~f~v~~~~~a~~~c~w~gv 83 (267) T 3rw6_A 11 GGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENT-------RAQFFVEDASTASALKAVNYK 83 (267) T ss_dssp ------------CCEEEEETTGGGSCHHHHHHHHHHTCSSCCCCEEEEEETT-------EEEEEESCHHHHHHHHHTTSS T ss_pred ccccccCCCCCCccEEEEECCCCCCCHHHHHHHHHHhCCCCeEeEEEEEeCC-------EEEEEeCCHHHHHHHHHcCCe Confidence 36778899999999999999999999999999999988 9999999999998 899999999999999999999 Q ss_pred eeccCCCceeEEEEcCCCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccc--cccCCcchhhhHHHH Q FBpp0305286 89 VAVINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSL--HFCPLHMVKLLETVL 166 (559) Q Consensus 89 i~~~~~~~~i~l~v~p~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l--~~~~l~~~~~~~~~l 166 (559) ++. .++.++...+.+..++....-.++.+.++.|+.++..+|+...+.++++.+..++.|.. .+...+....+++.+ T Consensus 84 ~c~-~~~~~v~~l~l~~~~~~~l~g~l~~~~~~~L~~~l~~~~n~~~~~L~l~~~~~~~~L~~~~L~ls~N~~~~i~~~l 162 (267) T 3rw6_A 84 ILD-RENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATL 162 (267) T ss_dssp CBC-TTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHH T ss_pred EEC-CCCCEEEEEEecCCCCcccccccCHHHHHHHHHHHhhccchhhceeeHhhcCCCcchhhcCeeeecchhhHHHHHH Confidence 884 46777877777776666666678888899999999999999999999999998887776 444555566777877 Q ss_pred HHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCcch----- Q FBpp0305286 167 VLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSV----- 241 (559) Q Consensus 167 ~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~~~----- 241 (559) ...++++++|++|+|++|+|+.++.++..+..+++|+.|+|++|+|+.+.++..+.+++|++|+|++|++++..+ T Consensus 163 ~~~~~~l~~L~~L~Ls~N~l~~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~l~L~~L~L~~N~l~g~iP~~~~~ 242 (267) T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267) T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHH T ss_pred HHHHhcCCcCCEEECCCCccccccchHHHHhhCCCCCEEeCCCCcCCCHHHHHHhhcCCCcEEEEeCCCCCCCccchHHH Confidence 777789999999999999999988765556899999999999999998865666776799999999999998544 Q ss_pred -hHHhccCCCccEEeCCCC Q FBpp0305286 242 -DVIRKMLPQLKNVHGCVQ 259 (559) Q Consensus 242 -~~il~~lp~L~~Ldl~~N 259 (559) ..++..+|+|+.||+... T Consensus 243 ~~~~~~~l~~L~~Ldg~~i 261 (267) T 3rw6_A 243 ISAIRERFPKLLRLDGHEL 261 (267) T ss_dssp HHHHHHHCTTCCEESSCBC T ss_pred HHHHHHHCCCcCeECCccC Confidence 245889999999998764No 4>4xm4_A MEX67; nuclear transport, mRNA export, transport protein; 2.95A {Chaetomium thermophilum} Probab=99.96 E-value=2e-31 Score=282.34 Aligned_cols=321 Identities=19% Similarity=0.288 Sum_probs=127.2 Q ss_pred ccCchhHHhHHHHHhcccccccccccCCCCCCCc---cccccccCCcchhhhHHHHHHhh-------ccCCCccEEEccC Q FBpp0305286 114 QITDEFTTAIQEALRSRYEVDSRTLDLSRFHASP---ELSLHFCPLHMVKLLETVLVLSN-------HLFPHVTSLVLSN 183 (559) Q Consensus 114 ~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~---~L~l~~~~l~~~~~~~~~l~~i~-------~~l~~L~~L~Ls~ 183 (559) .+..+.++.++.++..+|...++.++++.|..++ .|.+..|.+.....++....... ..+++|+.|+|++ T Consensus 13 ~~~~~~~~~l~~~L~~l~~~~~~~l~l~~l~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~n~l~~~~~~l~~L~~L~Ls~ 92 (386) T 4xm4_A 13 QAAQETKQKLTSCLARRYNAEQKLLDLSALGTDETLSSLGSFNNQSLAEKSFKALMHLVSNEYKDPEQKNEAIQAVSLAR 92 (386) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCchhHHHHHHHHHHHhccCcCceechhHccCCchhhcCCCCCCCccchhhhHHHHHHHhCCCCcccccCCcCCEEECCC Confidence 3456677888999999999999999988666554 44555555443333333221111 1378999999999 Q ss_pred CcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc-CCC-CccEEEeecCcCCCcchh--HHhccCCCccEEeCCCC Q FBpp0305286 184 NYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI-NKL-SCKTIFLAGNGLAKLSVD--VIRKMLPQLKNVHGCVQ 259 (559) Q Consensus 184 N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l-~~l-~L~~L~L~~N~l~~~~~~--~il~~lp~L~~Ldl~~N 259 (559) |+|+.++....++..+++|+.|+|++|+|+.++.+..+ ..+ +|++|+|++|+++..+.. .++..+|+|+.|++... T Consensus 93 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~Ld~n~i 172 (386) T 4xm4_A 93 NDILDVGQVYSLAVTLPRLRRLDLSGNNLENLSKISKWQQEFRFLEELHLTGNPVTTLPNYATEIKKWFPSLQILDGQQI 172 (386) T ss_dssp -------------------------------------------------------------------------------- T ss_pred CCCCCchhhHHHHhhCCCCCEEECCCCCCCCcHHHHHHHhcCCchheEeCCCCcCccchhHHHHHHHhCchhEEcCCCCC Confidence 99999876655567899999999999999998865566 677 899999999999987542 24788999999965443 Q ss_pred cCC-Cchh----ccCCC-CcccccCCCCCCccchhhhhhhhcccccCcccccccc-ccccccceeeeecCCcCc---ccc Q FBpp0305286 260 LGE-STEA----VDNIP-KSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLK-KYYDDQAMFSLSVPVQLN---YVY 329 (559) Q Consensus 260 ~~~-~~~~----~~~lp-~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~-~L~l~N~l~sl~~~~~~~---~~L 329 (559) ... .... ...+| ..+..++++. -......|+++|+..+|. ++..|. .+|.+++.++++.+.... ..- T Consensus 173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~Fl~~yy~~~d~--~R~~L~~~~Y~~~s~fs~~~~~~~~~~~~~~ 249 (386) T 4xm4_A 173 RTPQEAAESLKSSFPTPLPQLPSNVRDG-ENNVASTFLQAFFQLWDH--DRLTLIPQFYDSETTFSVVFATDSPQDPASS 249 (386) T ss_dssp -------------------------------CHHHHHHHHHHHHHHH--CGGGHHHHHCCTTCEEEEEECSCCSSCHHHH T ss_pred cCHHHhhhhcccccCCCcCcCCCccCCc-hhhHHHHHHHHHhhHhcC--CHHHHHHHhcCCCCeEEEEecCCCCCCcchh Confidence 211 1111 23455 5666677766 226778899999999997 799999 999999999998775432 234 Q ss_pred ceeecCCccccCC-ChhhhhhhhhhhhHHHHHHhhcCCCCCcC----CCceeeeeEeecC-----------CEEEEEEcC Q FBpp0305286 330 GYKLYNRNQKRQH-SSFAQNAKLQVGRAALLLALSRLPLMHTD----LENVGLDIQVFTS-----------SLRIFTLTG 393 (559) Q Consensus 330 ~~L~ls~N~i~~~-~~~~rl~~L~~g~~~i~~~L~~LP~t~h~----lssl~vD~~~~~~-----------~ll~itV~G 393 (559) .|+..|||..+.. +...+.+.+..|..+|...|.++|.++|+ .+++.+|+++..+ ..++|+|+| T Consensus 250 ~y~~~srNl~~~~~~~~~~~~~~~~G~~~I~~~l~~lp~t~h~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i~v~V~G 329 (386) T 4xm4_A 250 SCSKFSRNLNILSPRHPSTLQRLFVGSNLIADLWKVLPATRHPSLDQTSQWLIDCHTFPHLADPTGMAPYAMGLMINVNG 329 (386) T ss_dssp HHHHHHHHTTCCCCCCSSSCEEEEECHHHHHHHHHHSCEEECCCTTCTTTCEEEEEECTTBCCSSSSSSCBCCEEEEEEE T ss_pred hhcccccCcccccCCHHHHHhHhcCCHHHHHHHHHHCCCCcCCCCCCCCcEEEEEEEcCCcCCCCCCCCccceEEEEEee Confidence 5777899988876 66677778999999999999999999999 6789999999841 458999999 Q ss_pred ceEEcCC--CCCCCcceeeeEEEEecCC--C-cEEEEccceEEeeCCCC Q FBpp0305286 394 YFKEISS--DTLEPRRFQRTFVLQTSNS--P-GWLITNDMLCITSTMPD 437 (559) Q Consensus 394 ~f~e~~~--~~~~~r~F~RtFvl~p~~n--~-~~~I~ND~l~i~~~~~~ 437 (559) .|++.++ .....|+|+|||+|+|+++ + +|+|.||++++|+++.. T Consensus 330 ~~~~~~~~~~~~~~r~F~rtFvL~p~~~~~~~~~~I~nD~~~~~~~~~~ 378 (386) T 4xm4_A 330 QCEEADISQNLYGTRTFSRCFILGPSKPGAPHPYRVLSDQLTLHTWKPQ 378 (386) T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEECCTTCSSSEEEEEEEEEEEEEEEC T ss_pred EEEeCCCCCCCcCCcccceeEEEeECCCCCCCCEEEEcCcEEEccCCCC Confidence 9999653 1136899999999999864 5 89999999999998876No 5>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} Probab=99.85 E-value=1.8e-22 Score=195.07 Aligned_cols=171 Identities=22% Similarity=0.292 Sum_probs=143.7 Q ss_pred cccccCCCCCCccchhhhhhhhcccccCccc-----ccccccccc-ccceeeeecCCcC-----------ccccceeecC Q FBpp0305286 273 SQQLQGGGTNGLKFCQDFISSYYTFFDDTEE-----RFKLKKYYD-DQAMFSLSVPVQL-----------NYVYGYKLYN 335 (559) Q Consensus 273 Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~-----l~~L~~L~l-~N~l~sl~~~~~~-----------~~~L~~L~ls 335 (559) ++.-++++..+..++.+|+++|+..||. + +..|..+|. ++++++++++... ...-.|+..| T Consensus 2 ~~~~f~~~~~~~~v~~~Fv~~YY~~~D~--~~~~~~R~~L~~~Y~~~~S~fslt~~~~~~~~~~~~~~~~~~~~~Y~~~s 79 (205) T 3nv0_A 2 FRNGYYGSDEVRTLVEEFIITYYKIYDG--ADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTS 79 (205) T ss_dssp CCSCBCSSHHHHHHHHHHHHHHHHHHCS--TTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTC T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHhcC--CCcccCHHHHHHHhCCCccEEEEEecCCCCcccccccccccchHHhhhhc Confidence 3455778888889999999999999998 4 999999999 6999998775421 1234578889 Q ss_pred CccccCCC-hhhhhhhhhhhhHHHHHHhhcCCCCCcCCCceeeeeEeecCCEEEEEEcCceEEcC------CCCCCCcce Q FBpp0305286 336 RNQKRQHS-SFAQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTSSLRIFTLTGYFKEIS------SDTLEPRRF 408 (559) Q Consensus 336 ~N~i~~~~-~~~rl~~L~~g~~~i~~~L~~LP~t~h~lssl~vD~~~~~~~ll~itV~G~f~e~~------~~~~~~r~F 408 (559) ||..+..+ ...|...+.+|..+|+..|++||.|+|+++++.+|+++..+.+++|+|+|.|++.+ ......|+| T Consensus 80 RNl~~~~~~~~~r~~~~~~G~~~I~~~l~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~~~~~~r~F 159 (205) T 3nv0_A 80 HNVLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYF 159 (205) T ss_dssp CCGGGCCTTTTSSCCSCEEHHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEE T ss_pred ccccccccchhhhhhhhccCHHHHHHHHHhCCCeEEeeeeEEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceE Confidence 99988654 34566788999999999999999999999999999999999999999999999972 113579999 Q ss_pred eeeEEEEecCCCcEEEEccceEEeeCCCCCcceEEecccc Q FBpp0305286 409 QRTFVLQTSNSPGWLITNDMLCITSTMPDPKKTIKFKPET 448 (559) Q Consensus 409 ~RtFvl~p~~n~~~~I~ND~l~i~~~~~~~~~~i~~~~~~ 448 (559) +|||+|+|.++++|||.||+|+|++++.. +++.|+.. T Consensus 160 ~rtFvL~p~~~~~~~I~ND~f~i~~~s~~---~~~~~~~~ 196 (205) T 3nv0_A 160 TRTFMVAPRGEGKVAIVSDQLFISSMSKR---RGDQYRML 196 (205) T ss_dssp EEEEEEEECSTTCEEEEEEEEEEECCCHH---HHHHHHHC T ss_pred EEEEEEEECCCCCEEEEeeEEEEeCCCHH---HHHHHHHH Confidence 99999999987889999999999999986 56666544No 6>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2 Probab=99.84 E-value=2.7e-21 Score=187.87 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=131.6 Q ss_pred ccccCCCCCCccchhhhhhhhcccccCccccccccccccccceeeeecCCc--------------CccccceeecCCccc Q FBpp0305286 274 QQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQ--------------LNYVYGYKLYNRNQK 339 (559) Q Consensus 274 k~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~--------------~~~~L~~L~ls~N~i 339 (559) +..++++..+..++.+|+++|+..||. ++..|..+|.++++++++.... ....-.|+..|||.. T Consensus 4 k~~ff~~~~~~~i~~~Fv~~Yy~~~D~--~R~~L~~~Y~~~S~fS~~~~~~~P~~~~~~~~~~~~~~~~~~Y~~~SRNl~ 81 (219) T 1q40_B 4 ETMFFQDEDSRNLATNFIANYLKLWDA--NRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLT 81 (219) T ss_dssp ---------CHHHHHHHHHHHHHHHHS--CGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTT T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhc--CHHHHHhhhccccEEEEecCcCCCccccccccccccccchhhhhccCcccc Confidence 556788888999999999999999998 8999999999999999987321 223456888999999 Q ss_pred cCCChhhhhhhhhhhhHHHHHHhhcCCCCCcCC----CceeeeeEeecC-CEEEEEEcCceEEcCCC------------- Q FBpp0305286 340 RQHSSFAQNAKLQVGRAALLLALSRLPLMHTDL----ENVGLDIQVFTS-SLRIFTLTGYFKEISSD------------- 401 (559) Q Consensus 340 ~~~~~~~rl~~L~~g~~~i~~~L~~LP~t~h~l----ssl~vD~~~~~~-~ll~itV~G~f~e~~~~------------- 401 (559) +..+...|.+.+..|..+|...|+.||+|+|++ +++.+|+++... ++++|+|+|.|+|.+.. T Consensus 82 ki~~~~~r~~~l~~G~~~I~~~l~~LP~T~H~i~~~~~~~~vD~~~~~~~~~i~i~V~G~f~e~~~~~~~~~~~~~~~~~ 161 (219) T 1q40_B 82 RVSSIKARMAKLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGP 161 (219) T ss_dssp TCCSHHHHHHTCEEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC------- T ss_pred ccCCchhhcchhcccHHHHHHHHHhCCCeEEEeecCCCceEEEEEEeCCCCeEEEEEEEEEEECCCcccccccccccccc Confidence 999999999999999999999999999999999 688999997654 68999999999986421 Q ss_pred ---------------CCCCcceeeeEEEEecCCCcEEEEccceEEeeCCCC Q FBpp0305286 402 ---------------TLEPRRFQRTFVLQTSNSPGWLITNDMLCITSTMPD 437 (559) Q Consensus 402 ---------------~~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~~~~~~ 437 (559) ....|+|+|||+|+|.++++|||.||+|+|++++.. T Consensus 162 ~~~~~~~~~~~~~~~~~~~r~F~rtFvL~P~~~~~~~I~ND~l~ir~~~~~ 212 (219) T 1q40_B 162 RGGSRYHSGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTSD 212 (219) T ss_dssp ---CCSSSSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCSC T ss_pred cccccccccccccccccCCcceEEEEEEEECCCCeEEEEecEEEEecCCCc Confidence 015799999999999877789999999999999864No 7>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2 Probab=99.84 E-value=4.6e-21 Score=186.32 Aligned_cols=159 Identities=21% Similarity=0.329 Sum_probs=116.5 Q ss_pred ccCCCCCCccchhhhhhhhcccccCccccccccccccccceeeeecCCc-----------CccccceeecCCccccCCCh Q FBpp0305286 276 LQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQ-----------LNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 276 L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~-----------~~~~L~~L~ls~N~i~~~~~ 344 (559) .|+++..+..++.+|+++|+..||. ++..|..||.++++++++.+.. ....-.|+..|||..+..+. T Consensus 3 ~ff~~~~~~~i~~~Fv~~Yy~~~D~--dR~~L~~lY~~~S~fS~~~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ki~~~ 80 (221) T 1of5_A 3 FFFENDALGQSSTDFATNFLNLWDN--NREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSE 80 (221) T ss_dssp TCCCCCTTCHHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEEEECCC------------------------------- T ss_pred CCcCCHhHHHHHHHHHHHHHHHHhc--CHHHHHHhhcccceEEEEecCCCCcccccccccccchHHhhhhCccccccCCh Confidence 4678888999999999999999997 8999999999999999987542 12345688999999999888 Q ss_pred hhhhhhhhhhhHHHHHHhhcCCCCCcCC----CceeeeeEeecC-CEEEEEEcCceEEcCCCC----------------- Q FBpp0305286 345 FAQNAKLQVGRAALLLALSRLPLMHTDL----ENVGLDIQVFTS-SLRIFTLTGYFKEISSDT----------------- 402 (559) Q Consensus 345 ~~rl~~L~~g~~~i~~~L~~LP~t~h~l----ssl~vD~~~~~~-~ll~itV~G~f~e~~~~~----------------- 402 (559) ..|.+.+..|..+|...|+.||.++|++ +++.+||++..+ ++++|+|+|.|+|.+... T Consensus 81 ~~r~~~l~~G~~~I~~~l~~LP~T~H~i~~~~~~~~vD~~~~~~~~gi~i~V~G~f~e~~~p~~~~~~~~~~~~~~~~~~ 160 (221) T 1of5_A 81 KSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRR 160 (221) T ss_dssp -------CBHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------- T ss_pred hhhhhhhhccHHHHHHHHHhCCCeEEEeecCCCceEEEEEEecCCCeEEEEEEEEEEECCCccccccccccccccccccc Confidence 8899999999999999999999999999 689999999988 689999999999975320 Q ss_pred ------------CCCcceeeeEEEEecCCCcEEEEccceEEeeCCCC Q FBpp0305286 403 ------------LEPRRFQRTFVLQTSNSPGWLITNDMLCITSTMPD 437 (559) Q Consensus 403 ------------~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~~~~~~ 437 (559) ...|+|+|||+|+|. +++|+|.||+|+|++++.. T Consensus 161 ~~~~~~~~~~~~~~~r~F~rtFvL~P~-~~~~~I~ND~l~ir~~s~~ 206 (221) T 1of5_A 161 YNHGYNSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYSTG 206 (221) T ss_dssp --------CCSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECCCC T ss_pred cccccccccccccCCceeEEEEEEEEe-CCEEEEEeCEEEEeCCCCC Confidence 137999999999997 6789999999999999863No 8>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A Probab=99.84 E-value=6.9e-21 Score=189.54 Aligned_cols=166 Identities=28% Similarity=0.400 Sum_probs=146.9 Q ss_pred CCcccccCCCCCCccchhhhhhhhcccccCccccccccccccccceeeeecCCc-----CccccceeecCCccccCCChh Q FBpp0305286 271 PKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQ-----LNYVYGYKLYNRNQKRQHSSF 345 (559) Q Consensus 271 p~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~-----~~~~L~~L~ls~N~i~~~~~~ 345 (559) |..+..++++..+..++..|+++||..||. +++..|..+|.+++++++..+.. ....-.|+..|||..+..+.. T Consensus 2 ~~~~~~~~~~~~~~~i~~~Fv~~YY~~~D~-~~R~~L~~~Y~~~S~fs~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~ 80 (250) T 1jkg_B 2 PPCKGSYFGTENLKSLVLHFLQQYYAIYDS-GDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPT 80 (250) T ss_dssp CCCCSCBCSSHHHHHHHHHHHHHHHHHHTS-SCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHH T ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHhcc-CCHHHHHHhhCCCcEEEEecCCCCcCCccccHHHHhhhCccccccCChh Confidence 456777889988999999999999999995 36999999999999999987642 134556888999999999999 Q ss_pred hhhhhhhhhhHHHHHHhhcCCCCCcCCCceeeeeEeecCCEEEEEEcCceEEcCCCC-CCCcceeeeEEEEecCCCcEEE Q FBpp0305286 346 AQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDT-LEPRRFQRTFVLQTSNSPGWLI 424 (559) Q Consensus 346 ~rl~~L~~g~~~i~~~L~~LP~t~h~lssl~vD~~~~~~~ll~itV~G~f~e~~~~~-~~~r~F~RtFvl~p~~n~~~~I 424 (559) .|.+.+.+|..+|...|+.||.+.|+++++.+|++...+++++|+|+|.|++.++.+ ...|+|+|||+|+|.++++|+| T Consensus 81 ~r~~~~~~G~~~I~~~l~~LP~t~H~i~s~~vD~~~~~~~~i~i~V~G~f~~~~~~~~~~~r~F~rtFvL~p~~~~~~~I 160 (250) T 1jkg_B 81 LRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCI 160 (250) T ss_dssp HHHHHSEESHHHHHHHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEE T ss_pred hhhhhhcCCHHHHHHHHHhCCCeEEeeeeeeeeecCCCCCeEEEEEEEEEEEccCCCCCCCceEEEEEEEEECCCCeEEE Confidence 999999999999999999999999999999999999998899999999999976432 5799999999999987788999 Q ss_pred EccceEEeeCCCC Q FBpp0305286 425 TNDMLCITSTMPD 437 (559) Q Consensus 425 ~ND~l~i~~~~~~ 437 (559) .||+|+|++++.. T Consensus 161 ~ND~~r~~~~~~~ 173 (250) T 1jkg_B 161 VNDELFVRNASSE 173 (250) T ss_dssp EEEEEEEEECCHH T ss_pred EeeEEEEecCChh Confidence 9999999999875No 9>4x2h_A Putative mRNA export protein; mRNA nuclear export, TREX-2, transcription; 1.80A {Chaetomium thermophilum} PDB: 4x2o_A Probab=99.78 E-value=6.1e-20 Score=175.70 Aligned_cols=164 Identities=18% Similarity=0.315 Sum_probs=134.9 Q ss_pred CCCCcccccCCCCCCccchhhhhhhhcccccCcccccccc-ccccccceeeeecCCcCc---cccceeecCCccccCC-C Q FBpp0305286 269 NIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLK-KYYDDQAMFSLSVPVQLN---YVYGYKLYNRNQKRQH-S 343 (559) Q Consensus 269 ~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~-~L~l~N~l~sl~~~~~~~---~~L~~L~ls~N~i~~~-~ 343 (559) .+|..+..+.++ ...++..|+++||..||. ++..|. .+|.++++++++.+.... ..-.|+..|||..+.. + T Consensus 4 p~p~~~~~~~d~--~~~i~~~Fv~~YY~~~D~--~R~~L~~~~Y~~~S~fS~~~~~~~p~~~~~~~Y~~~sRNl~~~~~~ 79 (193) T 4x2h_A 4 PLPQLPSNVRDG--ENNVASTFLQAFFQLWDH--DRLTLIPQFYDSETTFSVVFATDSPQDPASSSCSKFSRNLNILSPR 79 (193) T ss_dssp CCCCCCCEEECC--TTCHHHHHHHHHHHHHHH--CGGGHHHHHCCTTCEEEEEESSCCTTCHHHHHHHHHHHHHHHHCTT T ss_pred CCCCCCCccccH--HHHHHHHHHHHHHHHHcC--CHHHHHHHhcCCCCEEEEEcCCCCccCcchHHHhhhCcchhccccc Confidence 345444443333 568899999999999997 899999 799999999998764221 2345778899998876 7 Q ss_pred hhhhhhhhhhhhHHHHHHhhcCCCCCc----CCCceeeeeEeecC-----------CEEEEEEcCceEEcCCC--CCCCc Q FBpp0305286 344 SFAQNAKLQVGRAALLLALSRLPLMHT----DLENVGLDIQVFTS-----------SLRIFTLTGYFKEISSD--TLEPR 406 (559) Q Consensus 344 ~~~rl~~L~~g~~~i~~~L~~LP~t~h----~lssl~vD~~~~~~-----------~ll~itV~G~f~e~~~~--~~~~r 406 (559) ...|...+..|..+|...|++||.++| +++++.+||++..+ .+++|+|+|.|++.++. ....| T Consensus 80 ~~~r~~~~~~G~~~I~~~l~~LP~t~h~~~~~~~~~~vD~~~~~~~~~~~g~~~~~~~ili~V~G~f~~~~~~~~~~~~r 159 (193) T 4x2h_A 80 HPSTLQRLFVGSNLIADLWKVLPATRHPSLDQTSQWLIDCHTFPHLADPTGMAPYAMGLMINVNGQCEEADISQNLYGTR 159 (193) T ss_dssp CTHHHHCSEESHHHHHHHHHHSCCEECCCTTCGGGEEEEEEEEEEECCTTSSSSCEEEEEEEEEEEEEEEETTTTEEEEE T ss_pred hhhhhhhhcCCHHHHHHHHHHCCCcCcccccCCceEEEEEEEecCccccccccccCCeEEEEEEEEEEECCCcCCCCCCc Confidence 778888999999999999999999999 88999999998875 68999999999997631 13689 Q ss_pred ceeeeEEEEecC-CCc--EEEEccceEEeeCCC Q FBpp0305286 407 RFQRTFVLQTSN-SPG--WLITNDMLCITSTMP 436 (559) Q Consensus 407 ~F~RtFvl~p~~-n~~--~~I~ND~l~i~~~~~ 436 (559) +|+|||+|+|.+ +++ |+|.||+|+|+++++ T Consensus 160 ~F~qtFvL~p~~~~~~~~~~I~ND~frl~~~~~ 192 (193) T 4x2h_A 160 TFSRCFILGPSKPGAPHPYRVLSDQLTLHTWKP 192 (193) T ss_dssp EEEEEEEEEECCTTCSSSEEEEEEEEEEEEEEE T ss_pred eEEEEEEEEEcCCCCCceEEEEcCEEEEecCCC Confidence 999999999983 567 999999999998864No 10>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Probab=99.71 E-value=2.6e-17 Score=166.08 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=167.4 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....+...| .+|+..+.++++.+.++.+. .-.+..+.+|+.|.+.+|.+..+ ....+.. T Consensus 17 ~c~~~~l~~ip~~~~~~l~~L~L~~n~i~~~~------------~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~ 78 (285) T 1ozn_A 17 SCPQQGLQAVPVGIPAASQRIFLHGNRISHVP------------AASFRACRNLTILWLHSNVLARI------DAAAFTG 78 (285) T ss_dssp ECCSSCCSSCCTTCCTTCSEEECTTSCCCEEC------------TTTTTTCTTCCEEECCSSCCCEE------CTTTTTT T ss_pred ECCCCCcCccCCCCCCcceEEEecCCcCCccC------------HHHcccCcCCCEEEcCCCccccc------ChhhhcC Confidence 45555566666 67777777888877763321 12356778888888888877643 1223478 Q ss_pred CCCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCC Q FBpp0305286 173 FPHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ 250 (559) Q Consensus 173 l~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~ 250 (559) +++|++|+|++| .++.++.. .+..+++|+.|+|++|+++.+.. ..+.++ +|++|+|++|.+.+..... +..+++ T Consensus 79 l~~L~~L~ls~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~ 154 (285) T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDDT-FRDLGN 154 (285) T ss_dssp CTTCCEEECCSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTT T ss_pred CccCCEEECCCCCCccccCHh--hcCCCccCCEEECCCCCCCeeCh-hhhccccccCEEeCCCCCccCcChhh-hhcCCC Confidence 899999999999 79888543 35889999999999999998753 478888 9999999999999988766 889999 Q ss_pred ccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecC-CcC Q FBpp0305286 251 LKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVP-VQL 325 (559) Q Consensus 251 L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~ 325 (559) |+.|++++|.+. +...+..+++|+.| ++++|.+..... .+. .+++|+.|++ +|.+..++.. ... T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~l~~ 223 (285) T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRL--------LLHQNRVAHVHPHAFR---DLGRLMTLYLFANNLSALPTEALAP 223 (285) T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEE--------ECCSSCCCEECTTTTT---TCTTCCEEECCSSCCSCCCHHHHTT T ss_pred CCEEEecCCcccccCHHHhCcccccCEE--------ECCCCCccccCHhHcC---CccccCEEECCCCcCCcCCHHHhhc Confidence 999999999764 33457889999999 555555555422 332 6899999999 7877766543 467 Q ss_pred ccccceeecCCccccCCChhh Q FBpp0305286 326 NYVYGYKLYNRNQKRQHSSFA 346 (559) Q Consensus 326 ~~~L~~L~ls~N~i~~~~~~~ 346 (559) ++.|++|++++|++.+..... T Consensus 224 l~~L~~L~l~~N~~~c~c~~~ 244 (285) T 1ozn_A 224 LRALQYLRLNDNPWVCDCRAR 244 (285) T ss_dssp CTTCCEEECCSSCEECSGGGH T ss_pred ccCCCEEEecCCCcccCCCcH Confidence 789999999999998866543No 11>4qxf_A Leucine-rich repeat-containing G-protein coupled 4, variable lymphocyte receptor...; ligand-receptor complex, LRR repeats, beta-hairpins, glucosy cell membrane, membrane protein; 2.25A {Homo sapiens} Probab=99.70 E-value=3.5e-17 Score=166.33 Aligned_cols=217 Identities=18% Similarity=0.137 Sum_probs=113.3 Q ss_pred EEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEE Q FBpp0305286 101 RVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSL 179 (559) Q Consensus 101 ~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L 179 (559) ...| .++...+.++++.+.++.+.. -.++++.+|+.|.+.+|.+... ....+..+++|++| T Consensus 25 ~~lp~~~~~~~~~L~Ls~n~i~~~~~------------~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L 86 (301) T 4qxf_A 25 TAVPEGLSAFTQALDISMNNITQLPE------------GAFKNFPFLEELQLAGNDLSFI------HPKALSGLKELKVL 86 (301) T ss_dssp SSCCSSCCTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEE T ss_pred cccCCCCCCcccEEECCCCCCCccCh------------hhcccccCCCEEECCCCccCeE------CHHHhccccCCCEE Confidence 3344 566666667777776644322 1234455566666665555421 11122456666666 Q ss_pred EccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCC Q FBpp0305286 180 VLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCV 258 (559) Q Consensus 180 ~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~ 258 (559) +|++|+|+.++.. .+..+++|+.|+|++|+++.++. ..+.++ +|++|+|++|.+....... +..+++|+.|+++. T Consensus 87 ~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~ 162 (301) T 4qxf_A 87 TLQNNQLKTVPSE--AIRGLSALQSLRLDANHITSVPE-DSFEGLVQLRHLWLDDNSLTEVPVHP-LSNLPTLQALTLAL 162 (301) T ss_dssp ECCSSCCSBCCTT--TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCSCCHHH-HTTCTTCCEEECCS T ss_pred ECCCCcCCccCHH--HhcCCCCCCEEECCCCccCcCCH-HHhCCCcCCCEEECCCCcCCccCHHH-hcCCCCCCEEECcC Confidence 6666666665432 23566666666666666665552 345556 6666666666666655444 55666666666666 Q ss_pred CcCCC--chhccCCCCcccccCCCCCCc----------------cchhhhhhhhcccccCcccccccccccc-ccceeee Q FBpp0305286 259 QLGES--TEAVDNIPKSQQLQGGGTNGL----------------KFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSL 319 (559) Q Consensus 259 N~~~~--~~~~~~lp~Lk~L~l~~~~l~----------------~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl 319 (559) |.+.. ...+..+++|+.|++++|.+. ++++|.+..++..+. .+++|+.|++ .|.+.++ T Consensus 163 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~l~~L~~L~l~~n~l~~~ 239 (301) T 4qxf_A 163 NKISSIPDFAFTNLSSLVVLHLHNNKIRSLSQHCFDGLDNLETLDLNYNNLGEFPQAIK---ALPSLKELALDTNQLKSV 239 (301) T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGG---GCTTCCEEECCSSCCCCC T ss_pred CcCCccCHHHhCCccCCCEEECCCCccCccCHhhccCcccCCEEECCCCcchhhHHHhh---CCCCCCEEECCCCccCcc Confidence 64432 223455556666633333322 223333333333322 3555555555 4444444 Q ss_pred ecC-CcCccccceeecCCccccCC Q FBpp0305286 320 SVP-VQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 320 ~~~-~~~~~~L~~L~ls~N~i~~~ 342 (559) +.. +..++.|++|++++|++.+. T Consensus 240 ~~~~~~~l~~L~~L~l~~N~~~c~ 263 (301) T 4qxf_A 240 PDGIFDRLTSLQKIWLHTNPWDCS 263 (301) T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC T ss_pred CHHHhcCcccCCEEEecCCCcccC Confidence 332 23445555666666665543No 12>4v2d_A FLRT2, fibronectin leucine rich transmembrane protein 2; signaling protein, leucine-rich repeat, UNC5; 2.50A {Homo sapiens} PDB: 4v2c_A Probab=99.69 E-value=6.5e-17 Score=166.27 Aligned_cols=238 Identities=13% Similarity=0.049 Sum_probs=157.4 Q ss_pred CceeEEEEcC-CCCccccccccCchhHHh--HHHHHhcccccccccccCC----------CCCCCccccccccCCcchhh Q FBpp0305286 95 CQKIEVRVTP-GLPKSMMCAQITDEFTTA--IQEALRSRYEVDSRTLDLS----------RFHASPELSLHFCPLHMVKL 161 (559) Q Consensus 95 ~~~i~l~v~p-~~p~~~~~l~l~~~~i~~--L~~~l~~~y~~~~~~LdLs----------~l~~L~~L~l~~~~l~~~~~ 161 (559) |....+...| .+|+..+.++++.+.+.. ++..+.. ....+.++++ -+.+|+.|.+.+|.+..+ T Consensus 14 c~~~~l~~ip~~~~~~L~~L~L~~n~i~~~~~p~~~~~--l~~L~~L~L~~n~l~~l~~~~~~~L~~L~L~~n~l~~~-- 89 (326) T 4v2d_A 14 CNERSLTSVPLGIPEGVTVLYLHNNQINNAGFPAELHN--VQSVHTVYLYGNQLDEFPMNLPKNVRVLHLQENNIQTI-- 89 (326) T ss_dssp CTTSCCSSCCSCCCSSCSEEECCSSCCCTTCCCGGGTT--CCSCCEEECCSCCCCBCCSSCCTTCCEEECTTSCCCBB-- T ss_pred eCCCCccccCCCCCCCccEEEccCCccCcccchhhhcc--cCeeeEEEcCCCccccccccccccceEEECcCCCCCcc-- Confidence 4444444455 567777778888887754 2222211 1334444443 235677777777776632 Q ss_pred hHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcc Q FBpp0305286 162 LETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLS 240 (559) Q Consensus 162 ~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~ 240 (559) ....+..+++|++|+|++|+|+.++.....+..+++|+.|+|++|+|+.++. ..+ +|++|++++|.+.+.. T Consensus 90 ----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~l~~l~~----~~~~~L~~L~l~~n~i~~~~ 161 (326) T 4v2d_A 90 ----SRAALAQLLKLEELHLDDNSISTVGVEDGAFREAISLKLLFLSKNHLSSVPV----GLPVDLQELRVDENRIAVIS 161 (326) T ss_dssp ----CHHHHHHCTTCCEEECCSSCCCTTTBCTTTGGGCTTCCEEECCSCCCSBCCS----CCCTTCCEEECCSSCCCBBC T ss_pred ----CHhHhhcccccCEEeCCCCCcceeccCccccccCccCCEEECCCCccCcCCC----cccccCCEEECCCCcccccC Confidence 2223467899999999999998764333345788999999999999998773 234 7888888888888777 Q ss_pred hhHHhccCCCccEEeCCCCcCC----CchhccCCCCcccccCCCCCCc--------------cchhhhhhhhcccccCcc Q FBpp0305286 241 VDVIRKMLPQLKNVHGCVQLGE----STEAVDNIPKSQQLQGGGTNGL--------------KFCQDFISSYYTFFDDTE 302 (559) Q Consensus 241 ~~~il~~lp~L~~Ldl~~N~~~----~~~~~~~lp~Lk~L~l~~~~l~--------------~L~~n~L~~~~~~~d~~~ 302 (559) +.. +..+++|+.|++++|.+. ....+..+++|+.|++++|.+. ++++|.++..+..... T Consensus 162 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-- 238 (326) T 4v2d_A 162 DMA-FQNLTSLERLIVDGNLLTNKGIAEGTFSHLTKLKEFSIVRNSLSHPPPDLPGTHLIRLYLQDNQINHIPLTAFA-- 238 (326) T ss_dssp TTT-TSSCCSCCEEECCSSCCCTTTBCTTSSTTCTTCCEEECTTSCCSSCCSSCCCSSCCEEECTTSCCCCCCTTTST-- T ss_pred HHH-hCCCcccCEEECCCCccccCCcChhHhccccCCCEEECCCCccccCCCCCCCCcceEEECCCCccceeChhHhh-- Confidence 655 778888888888888553 3345677788888866665543 3455666655532222 Q ss_pred cccccccccc-ccceeeeecC-CcCccccceeecCCccccCCChhhh Q FBpp0305286 303 ERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFAQ 347 (559) Q Consensus 303 ~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~r 347 (559) ++++|+.|++ +|.+..++.. +..++.|++|++++|++.+.+.... T Consensus 239 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 285 (326) T 4v2d_A 239 NLRKLERLDISNNQLRMLTQGVFDHLSNLKQLTARNNPWFCDCSIKW 285 (326) T ss_dssp TCTTCCEEECCSSCCCCCCTTSSSSCCSCCEEECCSCCEECSGGGHH T ss_pred cCCCcCEEECCCCcccccChhhhccccccCEEEecCCCcccCCcHHH Confidence 5778888888 6666655443 2556788888888888877655443No 13>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Probab=99.69 E-value=9e-17 Score=172.45 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=135.4 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....+...| .+|+..+.++++.+.+..+. .-.+.++.+|+.|.+.+|.+..+ ....+.+ T Consensus 49 ~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~------------~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~ 110 (440) T 3zyj_A 49 ICVRKNLREVPDGISTNTRLLNLHENQIQIIK------------VNSFKHLRHLEILQLSRNHIRTI------EIGAFNG 110 (440) T ss_dssp ECCSCCCSSCCSCCCTTCSEEECCSCCCCEEC------------TTTTSSCSSCCEEECCSSCCCEE------CGGGGTT T ss_pred EcCCCCcCcCCCCCCCCCcEEEccCCcCCccC------------HHHhcCCCCCCEEECCCCcCCcc------CHhHcCC Confidence 45555566666 67777777888887774432 22345667777777777766532 1123466 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecC-cCCCcchhHHhccCCC Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGN-GLAKLSVDVIRKMLPQ 250 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N-~l~~~~~~~il~~lp~ 250 (559) +++|++|+|++|+|+.++.. .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++| .+....... +..+++ T Consensus 111 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~l~~ 186 (440) T 3zyj_A 111 LANLNTLELFDNRLTTIPNG--AFVYLSKLKELWLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSN 186 (440) T ss_dssp CSSCCEEECCSSCCSSCCTT--TSCSCSSCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCSS T ss_pred CcCCCEEECCCCcCCccChh--HhcCCCCCcEEECCCCcCCeeCH-HHhhcCCcCCEEECCCCCCccccCHhH-hhCcCC Confidence 77777777777777777653 24677777777777777776653 355666 6666666663 333333333 556666 Q ss_pred ccEEeCCCCcCCCchhccCCCCcccccCCCCCCcc----------------chhhhhhhhcccccCcccccccccccc-c Q FBpp0305286 251 LKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLK----------------FCQDFISSYYTFFDDTEERFKLKKYYD-D 313 (559) Q Consensus 251 L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~----------------L~~n~L~~~~~~~d~~~~l~~L~~L~l-~ 313 (559) |+.|++++|.+...+.+..+++|+.|++++|.+.. +.+|.++.+...... ++++|+.|++ + T Consensus 187 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~ 264 (440) T 3zyj_A 187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD--NLQSLVEINLAH 264 (440) T ss_dssp CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST--TCTTCCEEECTT T ss_pred CCEeeCCCCcCCcCCCCCcccCcCEEECCCCccCccCHhhcCCCccCCEeeCCCCccCEEChhhhc--CCcCCCEEECCC Confidence 66666666654444445555556666444333322 223333333221111 4666777777 6 Q ss_pred cceeeeecC-CcCccccceeecCCccccCCChhhhhh Q FBpp0305286 314 QAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFAQNA 349 (559) Q Consensus 314 N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~rl~ 349 (559) |.+..++.. +..++.|++|++++|++.|.+....+. T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~ 301 (440) T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301 (440) T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHH T ss_pred CCCCccCHhHhcccccCCEEEccCCCCCCCCCcHHHH Confidence 666555433 245667777777777777766554443No 14>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Probab=99.68 E-value=9.4e-17 Score=172.80 Aligned_cols=233 Identities=15% Similarity=0.069 Sum_probs=126.0 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....+...| .+|+..+.++++.+.+..+. .-.+.++.+|+.|.+.+|.+..+ ....+.+ T Consensus 60 ~c~~~~l~~ip~~~~~~l~~L~L~~n~i~~~~------------~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~ 121 (452) T 3zyi_A 60 VCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ------------ADTFRHLHHLEVLQLGRNSIRQI------EVGAFNG 121 (452) T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC------------TTTTTTCTTCCEEECCSSCCCEE------CTTTTTT T ss_pred EECCCCcCccCCCCCCCCCEEECCCCcCCeEC------------HhhhhCCccCCEeECCCCCCCcc------ChhhccC Confidence 45555566666 67878888888888774432 12344556666666666655432 1112345 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeec-CcCCCcchhHHhccCCC Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAG-NGLAKLSVDVIRKMLPQ 250 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~-N~l~~~~~~~il~~lp~ 250 (559) +++|++|+|++|+|+.++.. .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++ |.+....... +..+++ T Consensus 122 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~l~~ 197 (452) T 3zyi_A 122 LASLNTLELFDNWLTVIPSG--AFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFN 197 (452) T ss_dssp CTTCCEEECCSSCCSBCCTT--TSSSCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTT T ss_pred CcCCCEEECCCCcCCccChh--hhhCCCCCCEEECCCCcccccCh-hhhhcCCcccEEeCCCCCCcCccChhh-ccCCCC Confidence 66666666666666665543 23556666666666666665542 244444 555555554 2232222222 444444 Q ss_pred ccEEeCCCCcCCCchhccCCCCcccccCCCCCCc----------------cchhhhhhhhcccccCcccccccccccc-c Q FBpp0305286 251 LKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGL----------------KFCQDFISSYYTFFDDTEERFKLKKYYD-D 313 (559) Q Consensus 251 L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~----------------~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~ 313 (559) |+.|++++|.+...+.+..+++|+.|++++|.+. ++.+|.+......... ++++|+.|++ + T Consensus 198 L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~ 275 (452) T 3zyi_A 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--GLASLVELNLAH 275 (452) T ss_dssp CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCS T ss_pred CCEEECCCCcccccccccccCCcCEEECCCCcCCccChhhccCCcCCCeEECCCCccCeEChhhcc--CcccCCEEECCC Confidence 4444444443333333333444444433333222 3333444433221111 5778888888 7 Q ss_pred cceeeeecC-CcCccccceeecCCccccCCChhhhhhh Q FBpp0305286 314 QAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFAQNAK 350 (559) Q Consensus 314 N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~rl~~ 350 (559) |.+.+++.. +..++.|++|++++|++.|.+....+.. T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~Np~~Cdc~~~~l~~ 313 (452) T 3zyi_A 276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAW 313 (452) T ss_dssp SCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHH T ss_pred CcCCccChhHhccccccCEEEecCCCcCCCCcchHHHH Confidence 777665543 2557788888888888888776655443No 15>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} PDB: 4oqt_A* Probab=99.67 E-value=3.6e-17 Score=177.22 Aligned_cols=174 Identities=14% Similarity=0.174 Sum_probs=81.4 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccC-------------CCCCCCccccccccCCcch Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDL-------------SRFHASPELSLHFCPLHMV 159 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdL-------------s~l~~L~~L~l~~~~l~~~ 159 (559) +|....+...| .+|+..+.++++.+.+..+.......+ ...+.++| .++.+|+.|.+.+|.+..+ T Consensus 17 ~c~~~~l~~ip~~~~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477) T 2id5_A 17 LCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477) T ss_dssp ECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC T ss_pred EeCCCCcCcCCCCCCcCCeEEECCCCcCceECHHHhcCC-CCCCEEECCCCccceeCHhhhCCcccCCEEECCCCcCCcc Confidence 45555666666 688888888888888755422111111 11222221 1233344444444433311 Q ss_pred hhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCC Q FBpp0305286 160 KLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAK 238 (559) Q Consensus 160 ~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~ 238 (559) ....+.++++|++|+|++|+|+.+.+. .+..+++|+.|+|++|+++.++. ..|.++ +|++|+|++|.+.. T Consensus 96 ------~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 166 (477) T 2id5_A 96 ------PLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTS 166 (477) T ss_dssp ------CTTSSTTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSS T ss_pred ------ChhhhcCCCCCCEEECCCCcccccCHh--HccCCCCCCEEECCCCCccEeCH-HHccCchhCCEEECcCCCCce Confidence 111223444555555555554444322 23444555555555555544432 244455 55555555555555 Q ss_pred cchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccC Q FBpp0305286 239 LSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQG 278 (559) Q Consensus 239 ~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l 278 (559) .+... +..+++|+.|++++|.+. ....+..+++|+.|.+ T Consensus 167 ~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 207 (477) T 2id5_A 167 IPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477) T ss_dssp CCHHH-HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE T ss_pred echhh-HhhCCCCcEEeCCCCCcCccChhhcccCCCCCEEEC Confidence 54443 555555555555555332 1223444455555533No 16>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Probab=99.66 E-value=6.7e-17 Score=164.65 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=83.7 Q ss_pred CceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccC Q FBpp0305286 95 CQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLF 173 (559) Q Consensus 95 ~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l 173 (559) |....+...| .+|+..+.++++.+.++.+... .++++.+|+.|.+.+|.+......+. .+..+ T Consensus 14 c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~ 77 (306) T 2z66_A 14 CNSKGLTSVPTGIPSSATRLELESNKLQSLPHG------------VFDKLTQLTKLSLSSNGLSFKGCCSQ----SDFGT 77 (306) T ss_dssp CCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT------------TTTTCTTCSEEECCSSCCCEEEEEEH----HHHSC T ss_pred cCCCCcccCCCCCCCCCcEEECCCCccCcCCHH------------HHhCcCCCCEEECCCCcCCcccCccc----ccccc Confidence 3333444445 6777777788888777543321 13445556666666555543221111 11355 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+++.++.. +..+++|+.|+|++|+++.++....+..+ +|++|+|++|.+.+..+.. +..+++|+ T Consensus 78 ~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 153 (306) T 2z66_A 78 TSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLE 153 (306) T ss_dssp SCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCC T ss_pred CCcCEEeCCCCCcccchhh---hcCCccCCEEECCCCCcCcccchhhhhccccCCeEECCCCCCCcchHhH-hhCcccCC Confidence 5666666666665555422 34555666666666655555432345555 5555555555555544433 45555555 Q ss_pred EEeCCCCcCC---CchhccCCCCcccc Q FBpp0305286 253 NVHGCVQLGE---STEAVDNIPKSQQL 276 (559) Q Consensus 253 ~Ldl~~N~~~---~~~~~~~lp~Lk~L 276 (559) .|++++|.+. .+..+..+++|+.| T Consensus 154 ~L~L~~n~l~~~~~~~~~~~l~~L~~L 180 (306) T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFL 180 (306) T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEE T ss_pred EEECCCCccccccCHHHhccCCCCCEE Confidence 5555555332 12234445555555No 17>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* 3ul9_A* Probab=99.66 E-value=1.4e-16 Score=159.87 Aligned_cols=218 Identities=15% Similarity=0.125 Sum_probs=160.6 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....+...| .+|+..+.++++.+.++.+ ..-.+..+.+|+.|.+.+|.+..+ ....+.. T Consensus 13 ~c~~~~l~~iP~~~~~~l~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~ 74 (276) T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHL------------GSYSFFSFPELQVLDLSRCEIQTI------EDGAYQS 74 (276) T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEE------------CTTTTTTCTTCSEEECTTCCCCEE------CTTTTTT T ss_pred EeCCCChhhCCCCCCCCCcEEECcCCccccc------------CHhhcCCCCCCCEEECCCCccccc------ChhhhcC Confidence 34444555556 5777777788887776332 122456778888888888877643 1223478 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcc-hhHHhccCCC Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLS-VDVIRKMLPQ 250 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~-~~~il~~lp~ 250 (559) +++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++.++. ..+..+ +|++|+|++|.+.... +.. +..+++ T Consensus 75 l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~l~~~-~~~l~~ 150 (276) T 2z62_A 75 LSHLSTLILTGNPIQSLALG--AFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTN 150 (276) T ss_dssp CTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTT T ss_pred cccCCEEECCCCcccccCHh--HhcCCcccceEECCCCCccccCc-ccccccccCCEEECcCCcceeeccchh-cCCCCC Confidence 89999999999999987643 35789999999999999998874 367888 9999999999998754 444 889999 Q ss_pred ccEEeCCCCcCCC--chhccCCCCcc----cccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCC Q FBpp0305286 251 LKNVHGCVQLGES--TEAVDNIPKSQ----QLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV 323 (559) Q Consensus 251 L~~Ldl~~N~~~~--~~~~~~lp~Lk----~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~ 323 (559) |+.|++++|.+.. ...+..+++|+ .| ++++|.+..++.... ...+|+.|++ +|.+..++... T Consensus 151 L~~L~Ls~n~l~~~~~~~~~~l~~L~~l~~~L--------~l~~n~l~~~~~~~~---~~~~L~~L~L~~N~l~~~~~~~ 219 (276) T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL--------DLSLNPMNFIQPGAF---KEIRLKELALDTNQLKSVPDGI 219 (276) T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEE--------ECCSSCCCEECTTSS---CSCCEEEEECCSSCCSCCCTTT T ss_pred CCEEECCCCCcceECHHHhhhhhcccccceee--------ecccCcccccChhhc---ccCcccEEECCCCccceECHHH Confidence 9999999996643 34455555555 66 666667766655433 3558999999 88887766543 Q ss_pred -cCccccceeecCCccccCCCh Q FBpp0305286 324 -QLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 324 -~~~~~L~~L~ls~N~i~~~~~ 344 (559) ..++.|++|++++|++.+... T Consensus 220 ~~~l~~L~~L~L~~N~~~c~c~ 241 (276) T 2z62_A 220 FDRLTSLQKIWLHTNPWDCSCP 241 (276) T ss_dssp TTTCCSCCEEECCSSCBCCCTT T ss_pred hcccccCCEEEecCCcccCCCC Confidence 668899999999999998653No 18>4p8s_A Reticulon-4 receptor-like 2; NOGO receptor, myelin associated glycoprotein, membrane PROT; HET: NAG NDG; 1.80A {Rattus norvegicus} SCOP: c.10.2.0 PDB: 4p91_A* Probab=99.65 E-value=3e-16 Score=157.89 Aligned_cols=213 Identities=16% Similarity=0.107 Sum_probs=157.1 Q ss_pred EEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccE Q FBpp0305286 100 VRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTS 178 (559) Q Consensus 100 l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~ 178 (559) +...| .+|+..+.++++.+.+..+... .+ ..+++.|.+.+|.+... ....+..+++|++ T Consensus 23 l~~ip~~~~~~l~~L~l~~n~i~~~~~~------------~~--~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~ 82 (282) T 4p8s_A 23 FSSVPLSLPPSTQRLFLQNNLIRSLRPG------------TF--GPNLLTLWLFSNNLSTI------YPGTFRHLQALEE 82 (282) T ss_dssp CSSCCSCCCTTCCEEECCSSCCCEECTT------------SS--CTTCSEEECCSSCCCEE------CTTTTTTCTTCCE T ss_pred CccCCCCcCcCCcEEEcCCCccceeCcc------------cc--cccCcEEECCCCcCCee------CHHHhhCcccCCE Confidence 33344 5666777777777766443210 01 15677777777776632 1223478899999 Q ss_pred EEccCCc-CCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeC Q FBpp0305286 179 LVLSNNY-LCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHG 256 (559) Q Consensus 179 L~Ls~N~-L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl 256 (559) |+|++|+ +..+++. .+..+++|+.|+|++|+|+.++. ..+.++ +|++|+|++|.+.+..+.. +..+++|+.|++ T Consensus 83 L~l~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 158 (282) T 4p8s_A 83 LDLGDNRHLRSLEPD--TFQGLERLQSLHLYRCQLSSLPG-NIFRGLVSLQYLYLQENSLLHLQDDL-FADLANLSHLFL 158 (282) T ss_dssp EECCCCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEEC T ss_pred EeCCCCCccCcCCcc--ccCCCCCCCEEECCCCcCCccCH-HHHcCCCCCCEEECCCCccCeeCHHH-hcCCccCCEEEC Confidence 9999998 8887543 35889999999999999998874 467888 9999999999999987765 889999999999 Q ss_pred CCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCcccccee Q FBpp0305286 257 CVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYK 332 (559) Q Consensus 257 ~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L 332 (559) ++|.+. +...+..+++|+.| ++++|.+..+...... ++++|+.|++ .|.+..++.. ...++.|++| T Consensus 159 ~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (282) T 4p8s_A 159 HGNRLRLLTEHVFRGLGSLDRL--------LLHGNRLQGVHRAAFH--GLSRLTILYLFNNSLASLPGEALADLPALEFL 228 (282) T ss_dssp TTSCCCEECTTTTTTCTTCCEE--------ECTTSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHHTCTTCCEE T ss_pred CCCcCcEeCHHHcCCcccCCEE--------ECCCCCcCccCHhHhc--CCCCCCEEECcCCcccccCHHHccCCcceeEE Confidence 999654 34457788999999 5566666555432222 5889999999 7877766543 3567899999 Q ss_pred ecCCccccCCChhh Q FBpp0305286 333 LYNRNQKRQHSSFA 346 (559) Q Consensus 333 ~ls~N~i~~~~~~~ 346 (559) ++++|++.+.+... T Consensus 229 ~l~~N~~~c~c~~~ 242 (282) T 4p8s_A 229 RLNANPWACDCRAR 242 (282) T ss_dssp ECCSSCEECSGGGH T ss_pred EecCCCccCCCccH Confidence 99999999866544No 19>4v2e_A FLRT3, fibronectin leucine rich transmembrane protein 3; signaling protein, leucine-rich repeat, LRR, UNC5; 2.50A {Mus musculus} Probab=99.65 E-value=4.9e-16 Score=159.89 Aligned_cols=238 Identities=14% Similarity=0.069 Sum_probs=155.0 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHh--HHHHHhcccccccccccCCC----------CCCCccccccccCCcchh Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTA--IQEALRSRYEVDSRTLDLSR----------FHASPELSLHFCPLHMVK 160 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~--L~~~l~~~y~~~~~~LdLs~----------l~~L~~L~l~~~~l~~~~ 160 (559) +|....+...| .+|+..+.++++.+.+.. +...+.. ....+.++++. +.+|+.|.+.+|.+..+ T Consensus 15 ~c~~~~l~~ip~~~~~~L~~L~L~~n~i~~~~l~~~l~~--l~~L~~L~L~~n~l~~l~~~~~~~L~~L~L~~n~i~~~- 91 (331) T 4v2e_A 15 YCNDRSLTSIPVGIPEDATTLYLQNNQINNVGIPSDLKN--LLKVQRIYLYHNSLDEFPTNLPKYVKELHLQENNIRTI- 91 (331) T ss_dssp ECCSSCCSSCCSCCCSSCSEEECTTSCCBSSCSCGGGTT--CCSCCEEECCSSBCCBSCSSCCSBCSEEECCSSCCCBB- T ss_pred EeCCCCCCccCCCCCCCCCEEECcCCccccccCcccccc--ccccCEEECCCCCcccccccccccCCEeECCCCCcCcc- Confidence 34444555555 577777778888887765 2222211 13444555442 34677777777766532 Q ss_pred hhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCc Q FBpp0305286 161 LLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKL 239 (559) Q Consensus 161 ~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~ 239 (559) ....+..+++|++|+|++|++..++.....+..+++|+.|+|++|+++.++. .-. +|++|+|++|.+... T Consensus 92 -----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~l~~----~~~~~L~~L~l~~n~l~~~ 162 (331) T 4v2e_A 92 -----TYDSLSKIPYLEELHLDDNSVSAVSIEEGAFRDSNYLRLLFLSRNHLSTIPG----GLPRTIEELRLDDNRISTI 162 (331) T ss_dssp -----CHHHHHTCSBCSEEECTTCCCCTTTBCTTCTTSCTTCCEEECCSSCCSSCCS----CCCTTCCEEECCSCCCCCC T ss_pred -----CHhHhcCCcccCEeECCCCcccccccChhhccCCCCCCEEECCCCCCCcCCc----chhccCCEEECCCCcCCEe Confidence 2223478899999999999998754333346889999999999999998774 123 788888888888887 Q ss_pred chhHHhccCCCccEEeCCCCcCC----CchhccCCCCcccccCCCCCCc--------------cchhhhhhhhcccccCc Q FBpp0305286 240 SVDVIRKMLPQLKNVHGCVQLGE----STEAVDNIPKSQQLQGGGTNGL--------------KFCQDFISSYYTFFDDT 301 (559) Q Consensus 240 ~~~~il~~lp~L~~Ldl~~N~~~----~~~~~~~lp~Lk~L~l~~~~l~--------------~L~~n~L~~~~~~~d~~ 301 (559) .+.. +..+++|+.|++++|... ....+..+++|+.|++++|.+. ++++|.++..+..... T Consensus 163 ~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~- 240 (331) T 4v2e_A 163 SSPS-LHGLTSLKRLVLDGNLLNNHGLGDKVFFNLVNLTELSLVRNSLTAAPVNLPGTSLRKLYLQDNHINRVPPNAFS- 240 (331) T ss_dssp CGGG-TTTCTTCCEEECCSCCCCTTTSCSSSSTTCTTCCEEECCSCCCCBCCSSCCCSSCCEEECTTCCCCBCCTTTST- T ss_pred CHHH-cCCCCCCCEEECCCCcCcccccCHHHHhCCCCCCEEECCCCccccCcCcCccCCCCEEECCCCcCCEECHHHhc- Confidence 7665 788888888888888543 2345677888888866655443 2344444444332111 Q ss_pred ccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCChhh Q FBpp0305286 302 EERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFA 346 (559) Q Consensus 302 ~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~ 346 (559) .+++|+.|++ .|.+.+++.. +..++.|++|++++|++.+.+... T Consensus 241 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~cdc~l~ 286 (331) T 4v2e_A 241 -YLRQLYRLDMSNNNLSNLPQGIFDDLDNITQLILRNNPWYCGCKMK 286 (331) T ss_dssp -TCTTCCEEECCSCCCCCCCSSSSSSCSSCCEEECCSCCEECSSTTT T ss_pred -CCCCCCEEECCCCccCccCHhHhccccCCCEEEecCcCcCCCCcch Confidence 4667777777 6666655433 245667777777777777655543No 20>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 4c2a_B 4c2b_B* 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Probab=99.65 E-value=8.8e-16 Score=155.81 Aligned_cols=185 Identities=14% Similarity=0.110 Sum_probs=146.8 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+.... ...+..+++|+.|+|++|+|+.++.. ..+++|+.|+|++|+|+.++. .+.. T Consensus 31 ~~l~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~~L~~L~L~~n~l~~l~~--~~~~ 98 (290) T 1p9a_G 31 KDTTILHLSENLLYTFS------LATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLSHNQLQSLPL--LGQT 98 (290) T ss_dssp TTCCEEECTTSCCSEEE------GGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEEECCSSCCSSCCC--CTTT T ss_pred ccCCEEECCCCcCCcCC------HHHhhcCCCcCEEECCCCcCCcccCC----CCCCcCCEEECCCCCccccCc--cccc Confidence 45667777777766331 12347899999999999999998765 688999999999999998885 6778 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccC Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDD 300 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~ 300 (559) + +|++|+|++|.+....+.. +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.++.++..... T Consensus 99 l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~ 169 (290) T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL--------SLANNNLTELPAGLLN 169 (290) T ss_dssp CTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE--------ECTTSCCSCCCTTTTT T ss_pred CCCCcEEEccCCccCEeccch-hcCCCCCCEEECCCCcCCcCChhhcccccCCCEE--------ECCCCcccccCHHHhc Confidence 8 9999999999999988665 8899999999999996643 4457889999999 6666666665553322 Q ss_pred cccccccccccc-ccceeeeecCCcCccccceeecCCccccCCChhhhhhhh Q FBpp0305286 301 TEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKL 351 (559) Q Consensus 301 ~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L 351 (559) .+++|+.|++ .|.+.+++........|++|++++|++.|.+.+..+..+ T Consensus 170 --~l~~L~~L~L~~N~l~~i~~~~~~~~~L~~l~L~~Np~~c~c~~~~l~~w 219 (290) T 1p9a_G 170 --GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219 (290) T ss_dssp --TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHH T ss_pred --ccCCCCEEECCCCcCcccChhhccccccCeEEecCCCccCCCccHHHHHH Confidence 6899999999 888887766566678999999999999987766554443No 21>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} SCOP: c.10.2.0 Probab=99.65 E-value=1.1e-15 Score=153.07 Aligned_cols=181 Identities=17% Similarity=0.108 Sum_probs=142.6 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.++.+..+. ...+.++++|++|+|++|+|+.++.. ++..+++|+.|+|++|+|+.++. ..|.. T Consensus 37 ~~l~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~ 107 (270) T 2o6q_A 37 ADTKKLDLQSNKLSSLP------SKAFHRLTKLRLLYLNDNKLQTLPAG--IFKELKNLETLWVTDNKLQALPI-GVFDQ 107 (270) T ss_dssp TTCSEEECCSSCCSCCC------TTSSSSCTTCCEEECCSSCCSCCCTT--TTSSCTTCCEEECCSSCCCCCCT-TTTTT T ss_pred CCCCEEEccCCcCCccC------HHHhhCCCCCCEEECCCCcCCeeChh--hccCCCCCCEEECCCCcCCcCCH-hHccC Confidence 45666777777665331 12347889999999999999998764 45789999999999999998883 46788 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccC Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDD 300 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~ 300 (559) + +|++|+|++|.+....+.. +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.++.++..... T Consensus 108 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~ 178 (270) T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL--------RLYNNQLKRVPEGAFD 178 (270) T ss_dssp CSSCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCSCCCTTTTT T ss_pred CcCCCEEECCCCcCceECHHH-hCCCCCCCEEECCCCcCCccCHhHccCCcccCEE--------ECCCCcCCccCHhHHh Confidence 8 9999999999999988765 8899999999999997653 3457889999999 5555555555443222 Q ss_pred cccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCCh Q FBpp0305286 301 TEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 301 ~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~ 344 (559) .+++|+.|++ +|.+..++.. ...++.|++|++++|++.+... T Consensus 179 --~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270) T 2o6q_A 179 --KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270) T ss_dssp --TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS T ss_pred --ccCCcCEEECCCCCCCccCHHHHhcCCCCCEEEecCCCcccCCc Confidence 5899999999 8888776543 4677899999999999998654No 22>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Probab=99.63 E-value=2.9e-16 Score=163.39 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=121.1 Q ss_pred EEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccE Q FBpp0305286 100 VRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTS 178 (559) Q Consensus 100 l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~ 178 (559) +...| .+++..+.++++.+.++.+.. -.+.++.+|+.|.+.+|.+..+ ....+..+++|++ T Consensus 43 l~~ip~~~~~~L~~L~L~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~ 104 (353) T 2z80_A 43 LNSIPSGLTEAVKSLDLSNNRITYISN------------SDLQRCVNLQALVLTSNGINTI------EEDSFSSLGSLEH 104 (353) T ss_dssp CSSCCTTCCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCE T ss_pred ccccCCCccccCCEEECcCCcCCccCH------------HHhccCCCCCEEECCCCcCCcc------ChhhccCCCCCCE Confidence 34445 566677778888877754321 1234455555555555555421 1112245556666 Q ss_pred EEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeec-CcCCCcchhHHhccCCCccEEeC Q FBpp0305286 179 LVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAG-NGLAKLSVDVIRKMLPQLKNVHG 256 (559) Q Consensus 179 L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~-N~l~~~~~~~il~~lp~L~~Ldl 256 (559) |+|++|+|+.+++. .+.++++|+.|+|++|+++.++....+..+ +|++|++++ |.+....... +..+++|+.|++ T Consensus 105 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l 181 (353) T 2z80_A 105 LDLSYNYLSNLSSS--WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEI 181 (353) T ss_dssp EECCSSCCSSCCHH--HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEE T ss_pred EECCCCccCccCHH--HhccCccCCEEECCCCcccccCcchhhccCCcceEEECCCCccccccCHHH-cCCCCCCCEEEC Confidence 66666666655432 235556666666666666655432245555 566666666 5555554443 555556666666 Q ss_pred CCCcCC--CchhccCCCCcccccCCCCCCccc------------------------------------------------ Q FBpp0305286 257 CVQLGE--STEAVDNIPKSQQLQGGGTNGLKF------------------------------------------------ 286 (559) Q Consensus 257 ~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L------------------------------------------------ 286 (559) ++|.+. .+..+..+++|+.|++++|.+..+ T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~~~l~~l~L~~~~l 261 (353) T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353) T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC T ss_pred CCCCCCccCHhHhhchhccCeeeCCCCcchhhhhhhhccCCccceeecccccccccccccccccccccchhheeeccccC Confidence 555432 223444555555554444432221 Q ss_pred hhhhhhhhcccccCcccccccccccc-ccceeeeecCC-cCccccceeecCCccccCCC Q FBpp0305286 287 CQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV-QLNYVYGYKLYNRNQKRQHS 343 (559) Q Consensus 287 ~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~-~~~~~L~~L~ls~N~i~~~~ 343 (559) ..+.+..++..+. .+++|+.|++ +|.+..++... ..++.|++|++++|++.+.. T Consensus 262 ~~~~~~~l~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 317 (353) T 2z80_A 262 TDESLFQVMKLLN---QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353) T ss_dssp CHHHHHHHHHHHH---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH T ss_pred CCchHHHHHHHhc---cccCCCEEECCCCccCccCHHHhccCccCCEEECCCCCCcccC Confidence 1122222233332 4678899999 77777665443 56788999999999988654No 23>4r58_A Leucine rich repeat protein; leucine rich repeat (LRR) protein, de novo protein; 2.40A {Synthetic construct} Probab=99.63 E-value=3.3e-15 Score=144.82 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=148.3 Q ss_pred ccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC Q FBpp0305286 134 DSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ 213 (559) Q Consensus 134 ~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~ 213 (559) ......+..+.+++.|.+.+|.+..+.. +..+++|++|+|++|+++.++.+ ..+++|+.|+|++|.++ T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~ 98 (220) T 4r58_A 31 VTDAVTQNELNSIDQIIANNSDIKSVQG--------IQYLPNLKTLKLSNNKITDISAL----KQLNNLGWLDLSNNGIT 98 (220) T ss_dssp TTSEECHHHHTTCCEEECCSSCCCCCTT--------GGGCTTCCEEECCSSCCCCCGGG----TTCTTCCEEECCSSCCC T ss_pred cccccchhhcccceEEecCCCCcccchh--------ccCCCCCCEEECCCCcccCchhh----ccCCCCCEEECcCCCcC Confidence 3344556678889999999888764421 36799999999999999997663 88999999999999999 Q ss_pred CCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhh Q FBpp0305286 214 DLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFIS 292 (559) Q Consensus 214 ~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~ 292 (559) .++ .+..+ +|++|++++|.+.+.. . +..+++|+.|++++|.+...+.+..+++|+.|++ ++|.+. T Consensus 99 ~~~---~~~~~~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l--------~~n~l~ 164 (220) T 4r58_A 99 DIS---ALKNLASLHTLDLSNNGITDIS--A-LKNLDNLHTLDLSNNGITDISALKNLDNLHTLDL--------SNNGIT 164 (220) T ss_dssp CCG---GGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC--------CSSCCC T ss_pred ChH---HhcCCCCCCEEECCCCCCcCch--h-hcCCCcCCEEEccCCCcccchhhcCCCCCCEEEC--------cCCccc Confidence 875 57888 9999999999999864 2 8899999999999998777777889999999944 444444 Q ss_pred hhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCCChhhhhhh Q FBpp0305286 293 SYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAK 350 (559) Q Consensus 293 ~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~ 350 (559) .++. +. .+++|+.|++ +|.+.+++ ....++.|++|++++|.+.....+..+.. T Consensus 165 ~~~~-~~---~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~l~~l~~ 218 (220) T 4r58_A 165 DISA-LK---NLTSLHTLDLSNNGITDIS-ALKNLDNLETLDLRNNGITDKSALKNLNN 218 (220) T ss_dssp CCGG-GT---TCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTT T ss_pred cCHh-Hc---CCCCCCEEECCCCCCCChH-HHhCCCCCCEEECcCCccCCchhhhcccc Confidence 4433 22 6899999999 78777753 35678999999999999987666554443No 24>4pq8_A Designed protein OR465; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.83A {Synthetic construct} PDB: 4psj_A Probab=99.63 E-value=3e-15 Score=149.97 Aligned_cols=177 Identities=19% Similarity=0.143 Sum_probs=108.0 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) +.+++.|.+.+|.+..+ +. +..+++|++|+|++|+++.++.. .+..+++|+.|+|++|.++.++. ..+. T Consensus 69 ~~~L~~L~l~~n~l~~~---~~-----~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 137 (271) T 4pq8_A 69 LPNVRYLALGGNKLHDI---SA-----LKELTNLGWLNLSNNQLETLPQG--VFEKLTNLTTLNLSNNQLTSLPQ-GVFE 137 (271) T ss_dssp CTTCCEEECTTSCCCCC---GG-----GTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTT T ss_pred CCcCcEEEeCCCCCCcc---cc-----ccCCCCCCEEEccCCCcCccCHh--hhccCCCCCEEECCCCcCCccCH-HHhC Confidence 55666666666655532 11 35667777777777777766543 23667777777777777776653 3456 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) .+ +|++|++++|.+.+.+... +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.+..++.... T Consensus 138 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~~~~ 208 (271) T 4pq8_A 138 RLASLTTLNLSNNQLTSLPQGV-FERLTNLTTLNLSNNQLTSLPQGVFERLTNLTTL--------NLSNNQLTSLPQGVF 208 (271) T ss_dssp TCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCCCCTTTT T ss_pred CCCCCcEEECCCCccccCCHhH-hccCCCCcEEECcCCccCccCHHHhcCCcCCCEE--------ECCCCcCCccCHHHh Confidence 66 7777777777777665544 6667777777777775432 2335666777777 444444444443221 Q ss_pred Ccccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) . .+++|+.|++ +|.+..++.. ...++.|++|++++|.+.. T Consensus 209 ~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 250 (271) T 4pq8_A 209 E--RLTSLTTLNLSNNQLTSLPQGVFERLTNLKTLNLSNNQLQS 250 (271) T ss_dssp T--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-- T ss_pred c--CCcCCCEEECCCCCcCccCHHHHhcCcCCCEEECCCCcCcc Confidence 1 4677777777 6666655433 3456677777777777663No 25>4qxf_A Leucine-rich repeat-containing G-protein coupled 4, variable lymphocyte receptor...; ligand-receptor complex, LRR repeats, beta-hairpins, glucosy cell membrane, membrane protein; 2.25A {Homo sapiens} Probab=99.63 E-value=1.1e-15 Score=155.18 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=114.4 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+.+|+.|.+.+|.+... ....+..+++|++|+|++|.++.++.. .+..+++|+.|+|++|+++.++. . T Consensus 101 ~~~l~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~ 171 (301) T 4qxf_A 101 IRGLSALQSLRLDANHITSV------PEDSFEGLVQLRHLWLDDNSLTEVPVH--PLSNLPTLQALTLALNKISSIPD-F 171 (301) T ss_dssp TTTCTTCCEEECCSSCCCBC------CTTTTTTCTTCCEEECCSSCCCSCCHH--HHTTCTTCCEEECCSSCCCEECT-T T ss_pred hcCCCCCCEEECCCCccCcC------CHHHhCCCcCCCEEECCCCcCCccCHH--HhcCCCCCCEEECcCCcCCccCH-H Confidence 34566677777777766532 112346788888888888888887643 24788888888888888887774 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC-chhccCCCCcccccCCCCCCccchhhhhhhhccc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES-TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~-~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) .+.++ +|++|+|++|.+.+..... +..+++|+.|++++|.+.. +..+..+++|+.| ++.+|.++.++.. T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L--------~l~~n~l~~~~~~ 242 (301) T 4qxf_A 172 AFTNLSSLVVLHLHNNKIRSLSQHC-FDGLDNLETLDLNYNNLGEFPQAIKALPSLKEL--------ALDTNQLKSVPDG 242 (301) T ss_dssp TTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCGGGGGCTTCCEE--------ECCSSCCCCCCTT T ss_pred HhCCccCCCEEECCCCccCccCHhh-ccCcccCCEEECCCCcchhhHHHhhCCCCCCEE--------ECCCCccCccCHH Confidence 67778 8999999999888877665 7788899999999886643 3456788899999 5555666665543 Q ss_pred ccCcccccccccccc-cccee Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMF 317 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~ 317 (559) ... ++++|+.|++ +|.+. T Consensus 243 ~~~--~l~~L~~L~l~~N~~~ 261 (301) T 4qxf_A 243 IFD--RLTSLQKIWLHTNPWD 261 (301) T ss_dssp TTT--TCTTCCEEECCSSCBC T ss_pred Hhc--CcccCCEEEecCCCcc Confidence 222 6899999999 56543No 26>4pq8_A Designed protein OR465; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.83A {Synthetic construct} PDB: 4psj_A Probab=99.62 E-value=1.5e-15 Score=152.17 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=145.5 Q ss_pred ccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCC Q FBpp0305286 136 RTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDL 215 (559) Q Consensus 136 ~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l 215 (559) ....++.+.+++.|.+.++.+.....+ ..+++|++|+|++|.++.++.+ ..+++|+.|+|++|+++.+ T Consensus 40 ~~~~~~~l~~L~~L~l~~~~l~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~ 107 (271) T 4pq8_A 40 DAVTQNELNSIDQIIANNSDIKSVQGI--------QYLPNVRYLALGGNKLHDISAL----KELTNLGWLNLSNNQLETL 107 (271) T ss_dssp SEECHHHHHTCCEEECTTSCCCCCTTG--------GGCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCC T ss_pred ccccccccccceEEEcCCCCceecccc--------ccCCcCcEEEeCCCCCCccccc----cCCCCCCEEEccCCCcCcc Confidence 344556788899999988877644211 3489999999999999998764 7899999999999999988 Q ss_pred CccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhh Q FBpp0305286 216 GELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFIS 292 (559) Q Consensus 216 ~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~ 292 (559) +. ..+.++ +|++|++++|.+++.+... +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.+. T Consensus 108 ~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~ 177 (271) T 4pq8_A 108 PQ-GVFEKLTNLTTLNLSNNQLTSLPQGV-FERLASLTTLNLSNNQLTSLPQGVFERLTNLTTL--------NLSNNQLT 177 (271) T ss_dssp CT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCC T ss_pred CH-hhhccCCCCCEEECCCCcCCccCHHH-hCCCCCCcEEECCCCccccCCHhHhccCCCCcEE--------ECcCCccC Confidence 74 467888 9999999999999887765 7899999999999996643 3447789999999 55555555 Q ss_pred hhcccccCcccccccccccc-ccceeeeecCC-cCccccceeecCCccccCC Q FBpp0305286 293 SYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV-QLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 293 ~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~-~~~~~L~~L~ls~N~i~~~ 342 (559) .++..... .+++|+.|++ .|.+..++... ..++.|++|++++|.++.. T Consensus 178 ~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 227 (271) T 4pq8_A 178 SLPQGVFE--RLTNLTTLNLSNNQLTSLPQGVFERLTSLTTLNLSNNQLTSL 227 (271) T ss_dssp CCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC T ss_pred ccCHHHhc--CCcCCCEEECCCCcCCccCHHHhcCCcCCCEEECCCCCcCcc Confidence 55543222 6899999999 78887665443 6789999999999998743No 27>4qxe_A Leucine-rich repeat-containing G-protein coupled 4, linker, variable lymphocyte receptor...; LRR repeats, R-spondins, glycosylation,, membrane; HET: NAG; 2.20A {Homo sapiens} Probab=99.62 E-value=4.7e-16 Score=166.57 Aligned_cols=214 Identities=19% Similarity=0.163 Sum_probs=139.5 Q ss_pred CceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccC Q FBpp0305286 95 CQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLF 173 (559) Q Consensus 95 ~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l 173 (559) |....+...| .++...+.++++.+.++.+.. -.+.++.+|+.|.+.+|.+... ....+..+ T Consensus 19 ~~~~~l~~ip~~~~~~~~~L~ls~n~i~~i~~------------~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l 80 (443) T 4qxe_A 19 CSGKGLTAVPEGLSAFTQALDISMNNITQLPE------------GAFKNFPFLEELQLAGNDLSFI------HPKALSGL 80 (443) T ss_dssp CTTSCCSSCCCSCCTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECTTSCCCEE------CTTTTTTC T ss_pred ccCCCccccCCCCcccccEEECCCCCcCEeCh------------hHhccCccCCEEECCCCccceE------CHHHhccC Confidence 3333344445 566666667777776643321 1245677777777777766532 11233678 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+++.++.. .+.++++|+.|+|++|+++.++. ..+.++ +|++|+|++|.+....... +..+++|+ T Consensus 81 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~ 156 (443) T 4qxe_A 81 KELKVLTLQNNQLKTVPSE--AIRGLSALQSLRLDANHITSVPE-DSFEGLVQLRHLWLDDNSLTEVPVHP-LSNLPTLQ 156 (443) T ss_dssp TTCCEEECCSSCCSBCCTT--TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCSCCHHH-HTTCTTCC T ss_pred cCCCEEECCCCccCccChh--hhcccCCCCEEECcCCCCCeeCH-hHhcCcccCCEEECCCCccccCChhh-cccCcCCC Confidence 8888888888888887643 34778888888888888887763 467777 8888888888888777665 78888888 Q ss_pred EEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCcccc Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVY 329 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L 329 (559) .|+++.|.+.. ...+..+++|+.|++++ |.+..+...... .+++|+.|++ .|.+..++.....++.| T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~L 226 (443) T 4qxe_A 157 ALTLALNKISSIPDFAFTNLSSLVVLHLHN--------NKIRSLSQHCFD--GLDNLETLDLNYNNLGEFPQAIKALPSL 226 (443) T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCS--------SCCCEECTTTTT--TCTTCCEEECCSSCCCSCCGGGGGCTTC T ss_pred EEECcCCCcceEChhhhccCCcCCEEECCC--------CccCccChhhhc--CCCCCCEEECCCCcCcccChhhcCCCCC Confidence 88888875542 23566778888884444 434333222111 4667777777 66665554444556677 Q ss_pred ceeecCCcccc Q FBpp0305286 330 GYKLYNRNQKR 340 (559) Q Consensus 330 ~~L~ls~N~i~ 340 (559) ++|++++|.+. T Consensus 227 ~~L~l~~n~l~ 237 (443) T 4qxe_A 227 KELGFHSNSIS 237 (443) T ss_dssp CEEECCSSCCC T ss_pred CEEECCCCCcC Confidence 77777777665No 28>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Probab=99.62 E-value=2e-15 Score=152.18 Aligned_cols=181 Identities=18% Similarity=0.086 Sum_probs=142.8 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCC-CCCCCCccCc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISAN-RIQDLGELNY 220 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N-~L~~l~~l~~ 220 (559) -..+++.|.+.++.+..+ ....+..+++|++|+|++|+|+.+.+. .+..+++|+.|+|++| .++.++. .. T Consensus 30 ~~~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~ls~n~~l~~~~~-~~ 100 (285) T 1ozn_A 30 IPAASQRIFLHGNRISHV------PAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSVDP-AT 100 (285) T ss_dssp CCTTCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCCCT-TT T ss_pred CCCcceEEEecCCcCCcc------CHHHcccCcCCCEEEcCCCcccccChh--hhcCCccCCEEECCCCCCccccCH-hh Confidence 345678888888877643 122347899999999999999998543 3588999999999999 7988863 47 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhccc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) +.++ +|++|+|++|.+.+..+.. +..+++|++|++++|.+.. ...+..+++|+.| ++++|.++.++.. T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~ 171 (285) T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL--------FLHGNRISSVPER 171 (285) T ss_dssp TTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCEECTT T ss_pred cCCCccCCEEECCCCCCCeeChhh-hccccccCEEeCCCCCccCcChhhhhcCCCCCEE--------EecCCcccccCHH Confidence 8888 9999999999999987766 8899999999999997643 3457889999999 5555666555543 Q ss_pred ccCcccccccccccc-ccceeeeec-CCcCccccceeecCCccccCC Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMFSLSV-PVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~~~~L~~L~ls~N~i~~~ 342 (559) ... .+++|+.|++ .|.+..+.. .+..++.|++|++++|.++.. T Consensus 172 ~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (285) T 1ozn_A 172 AFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285) T ss_dssp TTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC T ss_pred HhC--cccccCEEECCCCCccccCHhHcCCccccCEEECCCCcCCcC Confidence 222 6899999999 888877643 346789999999999998854No 29>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 4j4l_A 3rfj_A Probab=99.62 E-value=6.8e-15 Score=147.32 Aligned_cols=186 Identities=18% Similarity=0.182 Sum_probs=148.3 Q ss_pred cccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC Q FBpp0305286 135 SRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD 214 (559) Q Consensus 135 ~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~ 214 (559) .....+..+.+++.|.+.++.+..... +..+++|++|+|++|.++.++.+ ..+++|+.|+|++|.++. T Consensus 32 ~~~~~~~~l~~L~~L~l~~~~i~~~~~--------l~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~~ 99 (272) T 3rfs_A 32 TDAVTQNELNSIDQIIANNSDIKSVQG--------IQYLPNVRYLALGGNKLHDISAL----KELTNLTYLILTGNQLQS 99 (272) T ss_dssp TSEECHHHHTTCCEEECTTSCCCCCTT--------GGGCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECTTSCCCC T ss_pred ccccchhhhhhhHHHhhcCCCcccccc--------cccCCCCCEEECCCCccCcchhh----cCCCCCCEEECCCCccCc Confidence 344556678889999998888765421 36799999999999999997643 789999999999999998 Q ss_pred CCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhh Q FBpp0305286 215 LGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFI 291 (559) Q Consensus 215 l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L 291 (559) ++. ..+.++ +|++|+|++|.+.+..... +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.+ T Consensus 100 ~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l 169 (272) T 3rfs_A 100 LPN-GVFDKLTNLKELVLVENQLQSLPDGV-FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL--------DLSYNQL 169 (272) T ss_dssp CCT-TTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCC T ss_pred cCh-hHhcCCCCCCEEECCCCcCCccCHHH-hccCCCCCEEECCCCccCccCHHHhcCcccCCEE--------ECCCCcC Confidence 874 467888 9999999999999887765 8899999999999996643 3447789999999 5555656 Q ss_pred hhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCCh Q FBpp0305286 292 SSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 292 ~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~ 344 (559) +.++..... .+++|+.|++ +|.+..++.. ...++.|++|++++|.+.+... T Consensus 170 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~N~~~~~~~ 222 (272) T 3rfs_A 170 QSLPEGVFD--KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272) T ss_dssp CCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT T ss_pred CccCHHHhh--CCccCCEEECCCCcCCccCHHHHhCCCCCCEEEccCCCCcCcch Confidence 555443222 6899999999 7888776544 3678999999999999986543No 30>4ufr_A Leucine-rich repeat-containing G-protein coupled 5; signaling protein, WNT, LGR; HET: NAG; 2.20A {Homo sapiens} PDB: 4ufs_A Probab=99.62 E-value=5.5e-16 Score=167.67 Aligned_cols=215 Identities=17% Similarity=0.129 Sum_probs=139.7 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....+...| .++.....++++.+.+..+ ..-.+.++++|+.|.+.+|.+..+ ....+.+ T Consensus 23 ~~~~~~l~~~p~~l~~~~~~L~Ls~n~i~~~------------~~~~l~~l~~L~~L~L~~n~l~~i------~~~~~~~ 84 (484) T 4ufr_A 23 DCSDLGLSELPSNLSVFTSYLDLSMNNISQL------------LPNPLPSLRFLEELRLAGNALTYI------PKGAFTG 84 (484) T ss_dssp ECCSSCCSSCCSCCCTTEEEEECCSSCCCCC------------SSCCGGGCTTCCEEECCSSCCSCC------CTTTTTT T ss_pred ECCCCCccccCCCCCCcceEEECcCCcCccc------------ChhhhcccCCCCEEECCCCcCcEE------CHHHhCC Confidence 34444444445 5665556677777665322 122355677777787777766532 1223467 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) +++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++.++. ..|.++ +|++|+|++|.+...+... +..+++| T Consensus 85 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~i~~~~-~~~l~~L 160 (484) T 4ufr_A 85 LYSLKVLMLQNNQLRHVPTE--ALQNLRSLQSLRLDANHISYVPP-SCFSGLHSLRHLWLDDNALTEIPVQA-FRSLSAL 160 (484) T ss_dssp CTTCCEEECCSSCCSBCCSS--TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCSCCTTG-GGSCTTC T ss_pred CCCCCEEEccCCcCCccChH--HhcccCCCCEEECCCCcCCccCh-hHccCcccCCEEECCCCcCCeeChhH-hccCCCC Confidence 78888888888888887643 24778888888888888887763 357777 8888888888888777655 7788888 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +.|+++.|.+.. ...+..+++|+.|+++ +|.+..+...... ++++|+.|++ .|.+..++.....++. T Consensus 161 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~l~~l~~ 230 (484) T 4ufr_A 161 QAMTLALNKIHHIPDYAFGNLSSLVVLHLH--------NNRIHSLGKKCFD--GLHSLETLDLNYNNLDEFPTAIRTLSN 230 (484) T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECC--------SSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCGGGGGCTT T ss_pred CEEECCCCcCCccCHHHhccCCcCCEEECC--------CCccCccChhHhc--cCCCCCEEECCCCCcccchhhhhcccc Confidence 888888875542 2346777888888444 4444333322111 4677777777 6666655544556667 Q ss_pred cceeecCCcccc Q FBpp0305286 329 YGYKLYNRNQKR 340 (559) Q Consensus 329 L~~L~ls~N~i~ 340 (559) |++|++++|.+. T Consensus 231 L~~L~l~~n~l~ 242 (484) T 4ufr_A 231 LKELGFHSNNIR 242 (484) T ss_dssp CCEEECCSSCCC T ss_pred ccEEeCcCCcCC Confidence 777777777665No 31>4kt1_A Leucine-rich repeat-containing G-protein coupled 4; LGR receptor, complex structure, WNT signaling, H receptor-cell adhesion complex; HET: NAG; 2.50A {Homo sapiens} PDB: 4li1_B* 4li2_A Probab=99.61 E-value=6.6e-16 Score=168.45 Aligned_cols=214 Identities=19% Similarity=0.167 Sum_probs=136.1 Q ss_pred CceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccC Q FBpp0305286 95 CQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLF 173 (559) Q Consensus 95 ~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l 173 (559) |....+...| .++...+.++++.+.+..+.. -.+.++++|+.|.+.+|.+... ....+.++ T Consensus 18 c~~~~l~~ip~~l~~~~~~L~Ls~n~i~~i~~------------~~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l 79 (504) T 4kt1_A 18 CSGKGLTAVPEGLSAFTQALDISMNNITQLPE------------DAFKNFPFLEELQLAGNDLSFI------HPKALSGL 79 (504) T ss_dssp CCSSCCSSCCCSCCTTCCEEECCSSCCCEECT------------TTTTTCTTCSEEECTTSCCCEE------CTTTTTTC T ss_pred eCCCCccccCCccccCCcEEECCCCCCCccCH------------HHhcCCCCCCEEECCCCcCCcc------CHHHhccC Confidence 4444444444 566666677777776643321 1245667777777777766532 11234678 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++.++. ..|.++ +|++|+|++|.+.+..... +..+++|+ T Consensus 80 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~ 155 (504) T 4kt1_A 80 KELKVLTLQNNQLKTVPSE--AIRGLSALQSLRLDANHITSVPE-DSFEGLVQLRHLWLDDNSLTEVPVHP-LSNLPTLQ 155 (504) T ss_dssp TTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCSCCHHH-HTTCTTCC T ss_pred CCCCEEECcCCCCCccCHH--HhCCCCCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCCCceeChhH-hccCCCCC Confidence 8888888888888887643 24778888888888888887763 467778 8888888888888877665 77888888 Q ss_pred EEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCcccc Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVY 329 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L 329 (559) .|+++.|.+.. ...+..+++|+.|++++|. +......... ++++|+.|++ .|.+..++.....++.| T Consensus 156 ~L~l~~n~l~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~l~~l~~L 225 (504) T 4kt1_A 156 ALTLALNKISSIPDFAFTNLSSLVVLHLHNNK--------IRSLSQHCFD--GLDNLETLDLNYNNLGEFPQAIKALPSL 225 (504) T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTT--TCTTCCEEECCSSCCCSCCGGGGGCTTC T ss_pred EEECCCCccCccCHhHcCCCCcCCEEECCCCc--------CCccChhhhc--CCCCCCEEECCCCcchhhhHHHhcCCCc Confidence 88888875543 2346677888888444443 3332221111 4556666666 55554444334455566 Q ss_pred ceeecCCcccc Q FBpp0305286 330 GYKLYNRNQKR 340 (559) Q Consensus 330 ~~L~ls~N~i~ 340 (559) ++|++++|.+. T Consensus 226 ~~L~l~~n~l~ 236 (504) T 4kt1_A 226 KELGFHSNSIS 236 (504) T ss_dssp CEEECCSSCCC T ss_pred cEEeccCCccc Confidence 66666666554No 32>4r5c_A Leucine rich repeat protein; leucine rich repeat (LRR) protein, de novo protein; 1.93A {Synthetic construct} Probab=99.61 E-value=3.7e-15 Score=151.33 Aligned_cols=182 Identities=20% Similarity=0.149 Sum_probs=104.3 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) ++.+++|+.|.+.+|.+..+ ....+.++++|++|+|++|+++.++.. .+..+++|+.|+|++|+++.++. . T Consensus 80 l~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 150 (304) T 4r5c_A 80 LKELTNLGWLNLSNNQLETL------PQGVFEKLTNLTTLNLSNNQLTSLPQG--VFERLASLTTLNLSNNQLTSLPQ-G 150 (304) T ss_dssp GGGCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-T T ss_pred hcCCCCCCEEECCCCccCcC------CHHHhCCccCCCEEECCCCcCCccCHh--HhcCCcCCCEEECCCCccCccCH-H Confidence 34556666666666655422 112235667777777777777766543 23566777777777777776653 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT 296 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~ 296 (559) .+..+ +|++|++++|.+.+..... +..+++|+.|++++|.... ...+..+++|+.|++++|. +..... T Consensus 151 ~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------l~~~~~ 221 (304) T 4r5c_A 151 VFERLTNLTTLNLSNNQLTSLPQGV-FERLTNLTTLNLSNNQLTSLPQGVFERLTSLHTLDLSNNG--------ITDISA 221 (304) T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------CCCCGG T ss_pred HHhCCCCCCEEECCCCcccccCHHH-cCCCCCCCEEECCCCccCccCHHHhcCCCCCCEEECCCCC--------CCCchh Confidence 45666 7777777777776665544 5667777777777764432 2345566677777443333 322221 Q ss_pred cccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCCCh Q FBpp0305286 297 FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 297 ~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~ 344 (559) +. .+++|+.|++ +|.+..++ ....++.|++|++++|.+..... T Consensus 222 -l~---~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~~~~ 265 (304) T 4r5c_A 222 -LK---NLDNLHTLDLSNNGITDIS-ALKNLDNLHTLDLSNNGITDISA 265 (304) T ss_dssp -GT---TCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG T ss_pred -hc---CCCcCCEEECCCCCcCCCh-hhcCcCcCCEEECCCCCCCCchh Confidence 11 4566666666 55444432 23445666666666666654433No 33>4qdh_A Variable lymphocyte receptor B, TOLL-like recepto chimera; glycosylation, immune system; HET: NAG; 2.40A {Eptatretus burgeri} Probab=99.61 E-value=3.4e-16 Score=167.70 Aligned_cols=230 Identities=16% Similarity=0.100 Sum_probs=113.0 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCC-------------CCCCCccccccccCCcch Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLS-------------RFHASPELSLHFCPLHMV 159 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs-------------~l~~L~~L~l~~~~l~~~ 159 (559) +|....+...| .+|+..+.++++.+.++.+.......+ ...+.++|+ ++.+|+.|.+.+|.+... T Consensus 20 ~C~~~~l~~ip~~~~~~l~~L~L~~n~l~~l~~~~f~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 98 (438) T 4qdh_A 20 RCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSRNNLVTIKPEMFVNLSRLQCLSLSHNSIAQA 98 (438) T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCGGGGTTCTTCSEEECCSSCCCCB T ss_pred EccCCCCCcCCCCCCCCccEEeCCCCCCceeCHHHhhcC-ccCCEEECCCCcccEeCHhhccCcccCCEEECCCCcCCcc Confidence 45555566666 678777888888888766544222211 222222222 234444455544444321 Q ss_pred hhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCc-c----CccCCC-CccEEEeec Q FBpp0305286 160 KLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGE-L----NYINKL-SCKTIFLAG 233 (559) Q Consensus 160 ~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~-l----~~l~~l-~L~~L~L~~ 233 (559) .....+..+++|++|+|++|+|+.++.. .+..+++|+.|+|++|++..... + ..+..+ +|++|+|++ T Consensus 99 -----~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 171 (438) T 4qdh_A 99 -----VNGSQFLPLTNLQVLDLSHNKLDLYHWK--SFSELPQLQALDLSYNSQPFSMKGIGHNFSFVTHLSMLQSLSLAH 171 (438) T ss_dssp -----CSSCSSTTCTTCCEEECCSSCCBCCCTT--TTTTCTTCCEEECCSCCSCC----CCCCCTHHHHCTTCCEEECTT T ss_pred -----cChhhccCccCCCEEeCCCCCcCcCCHH--HhcccCCCCEEECCCCCCcccccccccchhhhhcCCcCCEeeCCC Confidence 0001124455555555555555554322 13455555555555555432110 0 012223 344444444 Q ss_pred CcCCCcch----------------------------hHHhccCCCccEEeCCCCcCCC--chhccCCC-CcccccCCCCC Q FBpp0305286 234 NGLAKLSV----------------------------DVIRKMLPQLKNVHGCVQLGES--TEAVDNIP-KSQQLQGGGTN 282 (559) Q Consensus 234 N~l~~~~~----------------------------~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp-~Lk~L~l~~~~ 282 (559) |.+.+..+ ...+..+++|+.|++++|.+.. +..+..+| +|+.|++ T Consensus 172 n~i~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~lp~~L~~L~L---- 247 (438) T 4qdh_A 172 NDIHTRVSSHLNSNSVRFLDFSGNGMGRMWDEGGLYLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSL---- 247 (438) T ss_dssp SCCCSSSCSCCEESSCCEEECTTSCHHHHHHSTTTTTTTTTEETTCCEEECTTSCCSCCCHHHHHTSCTTCCEEEC---- T ss_pred CCCcccccccccCCCcCEEEccCCCcccccCCccchhhhhcCcCCCCEEECCCCCCCccChhhhhccCcccceeEC---- Confidence 44432111 0115567788888888875543 34556664 6777744 Q ss_pred CccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 283 GLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 283 l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) ++|.++.++..... .+++|+.|++ .|.+..++.. +..++.|++|++++|.+.. T Consensus 248 ----~~n~l~~~~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 302 (438) T 4qdh_A 248 ----RDNYLSFFNWTSLS--FLPNLEVLDLAGNQLKALTNGTLPNGTLLQKLDVSSNSIVS 302 (438) T ss_dssp ----TTSCCSCCCGGGGG--GCTTCCEEECTTSCCCSBCSSCCCTTCCCCEEECTTSCCCC T ss_pred ----CCCCccccCHhHhc--cCCCCCEEECCCCcCcccchhhccCCccccEEECCCCcccc Confidence 44444333321111 4666777777 5666555422 3445666777777776653No 34>4tzh_A LIC12234; LRR protein, pathogen, virulence factor, unknown function; 1.39A {Leptospira interrogans} Probab=99.60 E-value=5.2e-15 Score=140.07 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=126.9 Q ss_pred HHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHh Q FBpp0305286 167 VLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIR 245 (559) Q Consensus 167 ~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il 245 (559) ...+..+++|++|+|++|.++.++.. +.++++|+.|+|++|+++.++. .+..+ +|++|++++|.+...+.. + T Consensus 11 ~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~n~l~~l~~~--~ 83 (190) T 4tzh_A 11 SDALKTPNEVQILDLSRNQLTILPKE---IEQLVNLESLHLRDNELTTLPE--EIGILKNLKYLDISRNQISNFPKE--I 83 (190) T ss_dssp HHHTTSGGGCCEEECTTSCCSSCCGG---GGGCTTCCEEECCSSCCSSCCG--GGGGCTTCCEEECCSSCCCCCCGG--G T ss_pred chhhhccccCcEEECCCCcceeCChh---HhcCCCcCEEECCCCcceeCch--hhcCCCCCCEEECCCCcccccchh--H Confidence 34457889999999999999987654 5789999999999999998875 67888 999999999999876543 7 Q ss_pred ccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCC Q FBpp0305286 246 KMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV 323 (559) Q Consensus 246 ~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~ 323 (559) ..+++|+.|++++|.+... ..+..+++|+.| ++++|.+..++..+. .+++|+.|++ +|.+..++... T Consensus 84 ~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L--------~l~~n~l~~l~~~~~---~l~~L~~L~l~~n~l~~l~~~l 152 (190) T 4tzh_A 84 QKLKNLEVLFLNGNSLSNLPEEIGELEKLGIL--------YLNNNQLTTLPKEIG---QLENLVSLSLSSNKLTSIPDEL 152 (190) T ss_dssp GGCTTCCEEECCSSCCSCCCGGGGGCTTCCEE--------ECCSSCCSCCCGGGG---GCTTCCEEECCSSCCCCCCGGG T ss_pred hcCCCcCEEEcCCCCCccchhhhhcCcCCCEE--------EcCCCCCccchHHHh---CCccCCEEECCCCCcchhhHHH Confidence 8899999999999966543 457788999999 555555555554443 6889999999 88887665555 Q ss_pred cCccccceeecCCccccCCC Q FBpp0305286 324 QLNYVYGYKLYNRNQKRQHS 343 (559) Q Consensus 324 ~~~~~L~~L~ls~N~i~~~~ 343 (559) ..++.|++|++++|.+.... T Consensus 153 ~~~~~L~~L~l~~n~~~~~~ 172 (190) T 4tzh_A 153 GQLKKLRILNLWDNPTLTTP 172 (190) T ss_dssp GGCTTCCEEECCSCTTCCSC T ss_pred hcccCCCEEeCcCCCCcccC Confidence 67889999999999998543No 35>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Probab=99.60 E-value=1.8e-16 Score=170.34 Aligned_cols=54 Identities=6% Similarity=-0.183 Sum_probs=32.3 Q ss_pred chhhhhhhhcccccCcccccccccccc-ccceeeeec-CCcCccccceeecCCccccC Q FBpp0305286 286 FCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSV-PVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 286 L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~~~~L~~L~ls~N~i~~ 341 (559) +++|.+......... .+++|+.|++ .|.+..+.. .+..++.|++|++++|.+.. T Consensus 282 L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455) T 3v47_A 282 LSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455) T ss_dssp CCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE T ss_pred ecCCccceechhhcC--CCCCCCEEECCCCcccccCHhHhhCcccCCEEECCCCcCCC Confidence 444555544332222 5777888888 666666543 23566777778888777753No 36>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Probab=99.60 E-value=7.8e-15 Score=145.34 Aligned_cols=162 Identities=19% Similarity=0.114 Sum_probs=130.0 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|+.|+|++|+|+.++.. .+.++++|+.|+|++|+|+.++. ..|..+ +|++|+|++|.+....... +..+++|+ T Consensus 35 ~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~ 110 (251) T 3m19_A 35 ADTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQLASLPLGV-FDHLTQLD 110 (251) T ss_dssp TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCC T ss_pred CCCCEEEecCCCCCeeCHH--HhcCcccCCEEECCCCcCCEeCh-hhcccCCCCCEEECCCCccCccCHhH-hcCccCCC Confidence 6899999999999998764 35789999999999999998874 468888 9999999999999887765 88999999 Q ss_pred EEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccc Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYV 328 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~ 328 (559) .|++++|.+.. ...+..+++|+.| ++++|.++.++..... .+++|+.|++ +|.+..++.. +..++. T Consensus 111 ~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251) T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKEL--------RLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251) T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTT T ss_pred EEECCCCcCCccCHhhcCCCCCCCEE--------ECCCCcCCeECHHHhC--CCCCCCEEECCCCcccccCHhHHhCCCC Confidence 99999996653 3457789999999 5566666665542222 5899999999 8888776543 467789 Q ss_pred cceeecCCccccCC-Chhhhhh Q FBpp0305286 329 YGYKLYNRNQKRQH-SSFAQNA 349 (559) Q Consensus 329 L~~L~ls~N~i~~~-~~~~rl~ 349 (559) |++|++++|++.+. +....+. T Consensus 181 L~~L~l~~N~~~c~~c~~~~l~ 202 (251) T 3m19_A 181 LQTITLFGNQFDCSRCEILYLS 202 (251) T ss_dssp CCEEECCSCCBCTTSTTHHHHH T ss_pred CCEEEEeCCCccCCccchHHHH Confidence 99999999999986 5554433No 37>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} SCOP: c.10.2.0 PDB: 3g04_C* Probab=99.60 E-value=4.5e-16 Score=153.04 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=112.3 Q ss_pred EEcCCCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCcccccccc-CCcchhhhHHHHHHhhccCCCccEE Q FBpp0305286 101 RVTPGLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVTSL 179 (559) Q Consensus 101 ~v~p~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~~L 179 (559) ...|++|+..+.++++.+.++.+. .-.++++.+|+.|.+.+| .+..+ ....+..+++|++| T Consensus 24 ~~~p~lp~~l~~L~l~~n~i~~i~------------~~~f~~l~~L~~L~L~~N~~l~~i------~~~~f~~l~~L~~L 85 (239) T 2xwt_C 24 QRIPSLPPSTQTLKLIETHLRTIP------------SHAFSNLPNISRIYVSIDVTLQQL------ESHSFYNLSKVTHI 85 (239) T ss_dssp SSCCCCCTTCCEEEEESCCCSEEC------------TTTTTTCTTCCEEEEECCSSCCEE------CTTTEESCTTCCEE T ss_pred ccCCCCCCCceEEEecCCcCCccC------------HhHhcCCCCeeEEEeeCCCCccee------CHhHccCCCCceEE Confidence 344566666555666655553321 112345556666666655 55422 11233566677777 Q ss_pred EccCC-cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecC-cCCCcchhHHhccCCC-ccEEe Q FBpp0305286 180 VLSNN-YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGN-GLAKLSVDVIRKMLPQ-LKNVH 255 (559) Q Consensus 180 ~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N-~l~~~~~~~il~~lp~-L~~Ld 255 (559) +|++| +|+.++.. .+..+++|+.|+|++|+|+.++.+..+..+ .|+.|++++| .+..+++.. +..+++ |+.|+ T Consensus 86 ~L~~N~~l~~i~~~--~f~~l~~L~~L~L~~N~l~~~p~l~~l~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~~L~~L~ 162 (239) T 2xwt_C 86 EIRNTRNLTYIDPD--ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLK 162 (239) T ss_dssp EEEEETTCCEECTT--SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEE T ss_pred EecCCCCccEECHH--HcCCCCCCCEEECCCCccccccCcccccccccceEEEecCCCCccccCHHH-hccccccCcEEE Confidence 77776 66666543 235666777777777777666655555566 6666777777 565555544 666666 67777 Q ss_pred CCCCcCC--CchhccCCCCcccccCCCCCCccchhhh-hhhhcccccCcccc-cccccccc-ccceeeeecCCcCccccc Q FBpp0305286 256 GCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDF-ISSYYTFFDDTEER-FKLKKYYD-DQAMFSLSVPVQLNYVYG 330 (559) Q Consensus 256 l~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~-L~~~~~~~d~~~~l-~~L~~L~l-~N~l~sl~~~~~~~~~L~ 330 (559) +++|.+. +...+.. ++|+.| ++.+|. ++.++..... ++ ++|+.|++ .|.+.++ |...+..|+ T Consensus 163 L~~N~l~~i~~~~~~~-~~L~~L--------~L~~N~~l~~i~~~~f~--~l~~~L~~L~ls~N~l~~l--~~~~l~~L~ 229 (239) T 2xwt_C 163 LYNNGFTSVQGYAFNG-TKLDAV--------YLNKNKYLTVIDKDAFG--GVYSGPSLLDVSQTSVTAL--PSKGLEHLK 229 (239) T ss_dssp CCSCCCCEECTTTTTT-CEEEEE--------ECTTCTTCCEECTTTTT--TCSBCCSEEECTTCCCCCC--CCTTCTTCS T ss_pred ecCCCCceECccccCC-CCcCEE--------ECCCCCCcCeeCHHHhc--CcccCCCEEeccCCcCccc--ChhHccccc Confidence 7666543 2233444 666666 444443 4444332111 35 66666666 5555543 334555666 Q ss_pred eeecCCc Q FBpp0305286 331 YKLYNRN 337 (559) Q Consensus 331 ~L~ls~N 337 (559) .|.++++ T Consensus 230 ~L~l~~~ 236 (239) T 2xwt_C 230 ELIARNT 236 (239) T ss_dssp EEECTTC T ss_pred eEEecCc Confidence 6666554No 38>4kng_A Leucine-rich repeat-containing G-protein coupled 5; leucine-rich repeat, cysteine-rich domain, furin-repeat, Pro associated domain, ligand recognition; HET: NAG; 2.50A {Homo sapiens} PDB: 4bsr_A* 4bss_A* 4bst_A* 4bsu_A* Probab=99.60 E-value=1.2e-15 Score=167.48 Aligned_cols=215 Identities=17% Similarity=0.131 Sum_probs=142.4 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....+...| .++.....++++.+.+..+ ..-.++++++|+.|.+.+|.+..+ ....+.+ T Consensus 22 ~~~~~~l~~~p~~l~~~~~~L~Ls~n~i~~~------------~~~~~~~l~~L~~L~L~~n~l~~i------~~~~~~~ 83 (531) T 4kng_A 22 DCSDLGLSELPSNLSVFTSYLDLSMNNISQL------------LPNPLPSLRFLEELRLAGNALTYI------PKGAFTG 83 (531) T ss_dssp ECCSSCCSSCCCCCCTTEEEEECTTSCCCCC------------CSCCCSCCTTCCEEECCSSCCCCC------CTTTTTT T ss_pred ECCCCCcccccccCCCCceEEECCCCccCcC------------ChhHhccCCCCCEEECCCCcCcee------CHHHhCC Confidence 34444444455 5666666677777666321 223466778888888888876632 1223478 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) +++|++|+|++|+|+.++.. .+.++++|+.|+|++|+++.++. ..+.++ +|++|+|++|.+..++... +..+++| T Consensus 84 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~i~~~~-~~~l~~L 159 (531) T 4kng_A 84 LYSLKVLMLQNNQLRHVPTE--ALQNLRSLQSLRLDANHISYVPP-SCFSGLHSLRHLWLDDNALTEIPVQA-FRSLSAL 159 (531) T ss_dssp CTTCCEEECCSSCCSBCCSS--TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCSCCHHH-HTTCTTC T ss_pred CCCCCEEECCCCCCCCcChh--HhccCCCCCEEECCCCccCccCH-hHccCCCCCCEEECCCCccCccCHhH-hcCCCCC Confidence 88999999999999888753 34788999999999999887763 468888 8999999999998887665 7888888 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +.|+++.|.+.. ...+..+++|+.|.+++|. +......... ++++|+.|++ .|.+..++.....++. T Consensus 160 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~--~l~~L~~L~L~~n~l~~lp~~l~~l~~ 229 (531) T 4kng_A 160 QAMTLALNKIHHIPDYAFGNLSSLVVLHLHNNR--------IHSLGKKCFD--GLHSLETLDLNYNNLDEFPTAIRTLSN 229 (531) T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--------CCEECTTTTT--TCTTCCEEECCSSCCCSCCGGGGGCTT T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCc--------cCccCHHHhc--cCCCCCEEECCCCCcccchhhhhhccc Confidence 888888886542 3346778888888544443 3332221111 4566666666 5555544433445556 Q ss_pred cceeecCCcccc Q FBpp0305286 329 YGYKLYNRNQKR 340 (559) Q Consensus 329 L~~L~ls~N~i~ 340 (559) |+.|++++|.+. T Consensus 230 L~~L~l~~n~l~ 241 (531) T 4kng_A 230 LKELGFHSNNIR 241 (531) T ss_dssp CCEEECCSSCCC T ss_pred CCEEeccCCccC Confidence 666666666554No 39>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* 3ul9_A* Probab=99.60 E-value=1.6e-15 Score=152.21 Aligned_cols=178 Identities=20% Similarity=0.142 Sum_probs=137.7 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+..+. ...+..+++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++.++. ..+.+ T Consensus 28 ~~l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~-~~~~~ 98 (276) T 2z62_A 28 FSTKNLDLSFNPLRHLG------SYSFFSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSLAL-GAFSG 98 (276) T ss_dssp TTCCEEECTTCCCCEEC------TTTTTTCTTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEECT-TTTTT T ss_pred CCCcEEECcCCcccccC------HhhcCCCCCCCEEECCCCcccccChh--hhcCcccCCEEECCCCcccccCH-hHhcC Confidence 56778888888776431 12347889999999999999998763 35889999999999999998873 47888 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC---chhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES---TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~---~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) + +|++|++++|.+.+..+.. +..+++|++|++++|.+.. +..+..+++|+.|++++|.+..+....+. T Consensus 99 l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------- 170 (276) T 2z62_A 99 LSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR------- 170 (276) T ss_dssp CTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH------- T ss_pred CcccceEECCCCCccccCccc-ccccccCCEEECcCCcceeeccchhcCCCCCCCEEECCCCCcceECHHHhh------- Confidence 9 9999999999999987665 8899999999999997643 45688999999995555544443222221 Q ss_pred Ccccccccc----cccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 300 DTEERFKLK----KYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 300 ~~~~l~~L~----~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) .+.+|. .|++ .|.+..++........|++|++++|.++. T Consensus 171 ---~l~~L~~l~~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~N~l~~ 214 (276) T 2z62_A 171 ---VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214 (276) T ss_dssp ---HHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC T ss_pred ---hhhcccccceeeecccCcccccChhhcccCcccEEECCCCccce Confidence 344554 7888 88888876655555689999999999874No 40>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Probab=99.59 E-value=6.2e-16 Score=157.46 Aligned_cols=181 Identities=15% Similarity=0.037 Sum_probs=141.9 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) ..+++.|.+.+|.+..+ ....+.++++|++|+|++|+|+.+......+..+++|+.|+|++|+++.++. .+. T Consensus 27 ~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~ 98 (306) T 2z66_A 27 PSSATRLELESNKLQSL------PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS--NFL 98 (306) T ss_dssp CTTCCEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE--EEE T ss_pred CCCCcEEECCCCccCcC------CHHHHhCcCCCCEEECCCCcCCcccCccccccccCCcCEEeCCCCCcccchh--hhc Confidence 45677888888877632 2223578999999999999999775333345789999999999999998874 688 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhh--hccc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISS--YYTF 297 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~--~~~~ 297 (559) ++ +|++|+|++|.+.+......+..+++|+.|++++|.+. ....+..+++|+.| ++++|.+.. .+.. T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~ 170 (306) T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL--------KMAGNSFQENFLPDI 170 (306) T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE--------ECTTCEEGGGEECSC T ss_pred CCccCCEEECCCCCcCcccchhhhhccccCCeEECCCCCCCcchHhHhhCcccCCEE--------ECCCCccccccCHHH Confidence 88 99999999999998866333889999999999999653 34567889999999 666666655 3334 Q ss_pred ccCcccccccccccc-ccceeeeec-CCcCccccceeecCCccccCC Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMFSLSV-PVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~~~~L~~L~ls~N~i~~~ 342 (559) +. .+++|+.|++ .|.+..+.. .+..++.|++|++++|.+... T Consensus 171 ~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306) T 2z66_A 171 FT---ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306) T ss_dssp CT---TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC T ss_pred hc---cCCCCCEEECCCCcCCCcChhHhccCCCCCEEECCCCcCCcc Confidence 43 6899999999 788877643 346778999999999998753No 41>4y61_B SLIT and NTRK-like protein 2, receptor-type tyrosine-protein phosphatase delta; trans-synaptic complex, hydrolase-signaling protein complex; HET: NAG; 3.36A {Mus musculus} Probab=99.58 E-value=4.5e-15 Score=149.14 Aligned_cols=165 Identities=14% Similarity=0.060 Sum_probs=132.5 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+|+.+... .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+....+.. +..++ T Consensus 59 ~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 134 (272) T 4y61_B 59 PPQYRIYQLFLNGNLLTRLYPN--EFVNYSNAVTLHLGNNGLQEIRP-GAFSGLKTLKRLHLNNNKLEVLREDT-FLGLE 134 (272) T ss_dssp CCSSSCEEEECTTCCCSEECTT--CCCSCTTEEEEECTTSCCCEECS-SCCCSCTTCCEEECCSSCCCEECTTT-TCSCS T ss_pred CCcCcceEEECCCCcCCccCHH--HhhCCCCCCEEECCCCcCCeeCH-hHccCCCCCCEEECCCCcCCeeCHHH-hcCCC Confidence 4566899999999999988543 35889999999999999998853 478888 9999999999999987766 88999 Q ss_pred CccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC--Cc Q FBpp0305286 250 QLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP--VQ 324 (559) Q Consensus 250 ~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~--~~ 324 (559) +|+.|++++|.+. ....+..+++|+.| ++++|.++.++.... .+++|+.|++ +|.+..++.. .. T Consensus 135 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L--------~L~~N~l~~l~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~ 203 (272) T 4y61_B 135 SLEYLQADYNYISTIEAGAFSKLNKLKVL--------ILNDNLLLSLPSNVF---RFVLLTHLDLRGNRLKVMPFAGVLE 203 (272) T ss_dssp SCCEEECTTSCCCEECGGGGTTCTTCCEE--------ECCSSCCSCCCTTSS---SSCCCSEEECTTSCCSCCCTTTHHH T ss_pred CCCEEECCCCcCCcCCHhHccCcccCCEE--------ECCCCccCccChhhc---CcCCCCEEECCCCCCcccChhhhhc Confidence 9999999999765 34568889999999 666666666655443 5789999999 8888777643 24 Q ss_pred CccccceeecCCccccCCChhhhhhh Q FBpp0305286 325 LNYVYGYKLYNRNQKRQHSSFAQNAK 350 (559) Q Consensus 325 ~~~~L~~L~ls~N~i~~~~~~~rl~~ 350 (559) .++.|++|++++|++.+.+....+.. T Consensus 204 ~l~~L~~L~L~~N~~~cdc~l~~l~~ 229 (272) T 4y61_B 204 HIGGIMEIQLEENPWNCTCDLLPLKA 229 (272) T ss_dssp HTTSCSEEECTTCCEECSGGGHHHHH T ss_pred ccCCccEEEeCCCCccCCCcChHHHH Confidence 56889999999999998877654443No 42>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Probab=99.58 E-value=5.3e-15 Score=151.09 Aligned_cols=203 Identities=10% Similarity=0.037 Sum_probs=150.8 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+++|+.|.+.+|.+... ...++|++|++++|.++.++. ..+++|+.|+|++|.++.++. . T Consensus 76 ~~~l~~L~~L~l~~n~l~~~-----------~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~ 138 (317) T 3o53_A 76 LESLSTLRTLDLNNNYVQEL-----------LVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRD-L 138 (317) T ss_dssp ETTCTTCCEEECCSSEEEEE-----------EECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGG-B T ss_pred ccccCcCCEEECCCCccCcc-----------cCCCCcCEEECCCCcccccch-----hhCCCCCEEECcCCCCCCcch-h Confidence 44566777777776665532 233778888888888777553 467889999999999998764 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) .+..+ +|++|+|++|.+.+.....++..+++|+.|++++|.+........+++|+.| ++++|.+..++..+ T Consensus 139 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L--------~l~~n~l~~~~~~~ 210 (317) T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL--------DLSSNKLAFMGPEF 210 (317) T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE--------ECCSSCCCEECGGG T ss_pred hhhhcCCccEEECcCCcCCccchhhhhhhcCcCCEEECCCCccccccccccCCCCCEE--------ECcCCcCCCCccch Confidence 67778 9999999999999877666457899999999999977655555578999999 55555555554443 Q ss_pred cCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC---CChhhhhhhhhhhhHHHHHHhhcCCCCCc Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ---HSSFAQNAKLQVGRAALLLALSRLPLMHT 370 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~---~~~~~rl~~L~~g~~~i~~~L~~LP~t~h 370 (559) . .+++|+.|++ +|.+.+++.....++.|++|++++|.+.+ ...+..+..|.......+..+...+.... T Consensus 211 ~---~l~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~c 283 (317) T 3o53_A 211 Q---SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317) T ss_dssp G---GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC T ss_pred h---hcCCCCEEECCCCccccccHHHhcCCccCEEEeCCCcccCcCHHHHhhhcchheehhccccccccccCcccc Confidence 3 6899999999 88888877666778999999999999974 33445555666665656677776655443No 43>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Probab=99.57 E-value=2.6e-15 Score=161.16 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=132.0 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) ..+++.|.+.+|.+..+ ....+.++++|++|+|++|+|+.++.. .+.++++|+.|+|++|+|+.++. ..|. T Consensus 63 ~~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~ 133 (440) T 3zyj_A 63 STNTRLLNLHENQIQII------KVNSFKHLRHLEILQLSRNHIRTIEIG--AFNGLANLNTLELFDNRLTTIPN-GAFV 133 (440) T ss_dssp CTTCSEEECCSCCCCEE------CTTTTSSCSSCCEEECCSSCCCEECGG--GGTTCSSCCEEECCSSCCSSCCT-TTSC T ss_pred CCCCcEEEccCCcCCcc------CHHHhcCCCCCCEEECCCCcCCccCHh--HcCCCcCCCEEECCCCcCCccCh-hHhc Confidence 35677777778877643 122347899999999999999998754 35899999999999999999884 4788 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcC---CCchhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLG---ESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~---~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) ++ +|++|+|++|.+....... +..+++|+.|++++|.. .+...+..+++|+.|++++| .++.++.. T Consensus 134 ~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~- 203 (440) T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--------NLREIPNL- 203 (440) T ss_dssp SCSSCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS--------CCSSCCCC- T ss_pred CCCCCcEEECCCCcCCeeCHHH-hhcCCcCCEEECCCCCCccccCHhHhhCcCCCCEeeCCCC--------cCCcCCCC- Confidence 99 9999999999999887766 89999999999998532 23456888999999955554 44444331 Q ss_pred cCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) . .+++|+.|++ .|.+..+... +..++.|++|++++|.+.. T Consensus 204 ~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440) T 3zyj_A 204 T---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440) T ss_dssp T---TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE T ss_pred C---cccCcCEEECCCCccCccCHhhcCCCccCCEeeCCCCccCE Confidence 1 4667777777 6666655332 3456667777777776653No 44>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} SCOP: c.10.2.0 Probab=99.57 E-value=6.9e-15 Score=147.22 Aligned_cols=181 Identities=17% Similarity=0.113 Sum_probs=139.3 Q ss_pred CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC Q FBpp0305286 105 GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN 184 (559) Q Consensus 105 ~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N 184 (559) .+|+..+.++++.+.+..+ ..-.+.++.+|+.|.+.+|.+..+ ...++..+++|++|+|++| T Consensus 34 ~~~~~l~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n 95 (270) T 2o6q_A 34 NIPADTKKLDLQSNKLSSL------------PSKAFHRLTKLRLLYLNDNKLQTL------PAGIFKELKNLETLWVTDN 95 (270) T ss_dssp CCCTTCSEEECCSSCCSCC------------CTTSSSSCTTCCEEECCSSCCSCC------CTTTTSSCTTCCEEECCSS T ss_pred cCCCCCCEEEccCCcCCcc------------CHHHhhCCCCCCEEECCCCcCCee------ChhhccCCCCCCEEECCCC Confidence 5676667777777766332 122356788889999988877633 2234578999999999999 Q ss_pred cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC Q FBpp0305286 185 YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES 263 (559) Q Consensus 185 ~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~ 263 (559) +|+.++.. .+..+++|+.|+|++|+++.++. ..|.++ +|++|+|++|.+....... +..+++|+.|++++|.+.. T Consensus 96 ~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~ 171 (270) T 2o6q_A 96 KLQALPIG--VFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKGV-FDKLTSLKELRLYNNQLKR 171 (270) T ss_dssp CCCCCCTT--TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSC T ss_pred cCCcCCHh--HccCCcCCCEEECCCCcCceECH-HHhCCCCCCCEEECCCCcCCccCHhH-ccCCcccCEEECCCCcCCc Confidence 99998764 35889999999999999999874 468888 9999999999999888765 8899999999999996653 Q ss_pred --chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-cccee Q FBpp0305286 264 --TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMF 317 (559) Q Consensus 264 --~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~ 317 (559) ...+..+++|+.| ++++|.++.++..... .+++|+.|++ +|.+. T Consensus 172 ~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~~ 218 (270) T 2o6q_A 172 VPEGAFDKLTELKTL--------KLDNNQLKRVPEGAFD--SLEKLKMLQLQENPWD 218 (270) T ss_dssp CCTTTTTTCTTCCEE--------ECCSSCCSCCCTTTTT--TCTTCCEEECCSSCBC T ss_pred cCHhHHhccCCcCEE--------ECCCCCCCccCHHHHh--cCCCCCEEEecCCCcc Confidence 3457889999999 5555555555442222 6889999999 55543No 45>4rcw_A SLIT and NTRK-like protein 1; leucine rich-repeat, synaptic adhesion, signaling protein; 3.19A {Homo sapiens} Probab=99.57 E-value=1.1e-14 Score=142.93 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=130.2 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+|+.+.+. .+..+++|+.|+|++|+|+.++. ..+.++ +|++|+|++|.+.+..+.. +..++ T Consensus 32 ~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 107 (240) T 4rcw_A 32 PKLSNVQELFLRDNKIHSIRKS--HFVDYKNLILLDLGNNNIATVEN-NTFKNLLDLRWLYMDSNYLDTLSREK-FAGLQ 107 (240) T ss_dssp ---CCEEEEECCSCCCCEECGG--GGSSCCSCSEEECCSCCCCEECT-TTTTTCCSCCEEECCSSCCCEECTGG-GTTCS T ss_pred cCCCCCeEEEccCCcCCccCHh--HcccCCCCCEEECCCCCCCeeCH-hhcCCCCCCCEEECCCCccCcCCHHH-hCCCC Confidence 5688999999999999987543 35789999999999999998763 468888 9999999999999887766 88999 Q ss_pred CccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC--Cc Q FBpp0305286 250 QLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP--VQ 324 (559) Q Consensus 250 ~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~--~~ 324 (559) +|+.|++++|.+. .+..+..+++|+.| ++++|.++.++..+. ...+|+.|++ .|.+..++.+ .. T Consensus 108 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~l~~~~~---~~~~L~~L~L~~N~l~~~~~~~~l~ 176 (240) T 4rcw_A 108 NLEYLNVEYNAIQLILPGTFNAMPKLRIL--------ILNNNLLRSLPVDVF---AGVSLSKLSLHNNYFMYLPVAGVLD 176 (240) T ss_dssp SCCEEECCSSCCCEECTTGGGSCTTCCEE--------ECCSSCCCCCCTTSS---SSCCCSEEECCSSCCSCCCCCCCCT T ss_pred ccCEEECCCCcCCccChhHhcCCcCCCEE--------ECCCCccCccCHHHc---CCCCcCEEECCCCcCCcCCHHHHhh Confidence 9999999999764 34567889999999 666666666655433 4678999999 8888877644 35 Q ss_pred CccccceeecCCccccCCChhhhh Q FBpp0305286 325 LNYVYGYKLYNRNQKRQHSSFAQN 348 (559) Q Consensus 325 ~~~~L~~L~ls~N~i~~~~~~~rl 348 (559) .++.|++|++++|++.+.+....+ T Consensus 177 ~l~~L~~L~l~~N~~~c~c~l~~~ 200 (240) T 4rcw_A 177 QLTSIIQIDLHGNPWECSCTIVPF 200 (240) T ss_dssp TCCSCCEEECCSCCEECSTTTHHH T ss_pred hcCceeEEEecCCCeeccCCCHHH Confidence 678999999999999987665543No 46>4r5c_A Leucine rich repeat protein; leucine rich repeat (LRR) protein, de novo protein; 1.93A {Synthetic construct} Probab=99.57 E-value=1.9e-14 Score=146.07 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=134.5 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+++++.|.+.+|.+..+. .+..+++|++|+|++|+++.++.. .+.++++|+.|+|++|.++.++. . T Consensus 58 l~~l~~L~~L~l~~~~l~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 126 (304) T 4r5c_A 58 IQYLPNVRYLALGGNKLHDIS--------ALKELTNLGWLNLSNNQLETLPQG--VFEKLTNLTTLNLSNNQLTSLPQ-G 126 (304) T ss_dssp GGGCTTCCEEECTTSCCSCCG--------GGGGCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCT-T T ss_pred cccCcCCCEEEcCCCCCCcCh--------hhcCCCCCCEEECCCCccCcCCHH--HhCCccCCCEEECCCCcCCccCH-h Confidence 456777788888777766431 136789999999999999887754 34788999999999999988774 4 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT 296 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~ 296 (559) .+..+ +|++|++++|.+.+.+... +..+++|+.|++++|.... ...+..+++|+.| ++++|.+...+. T Consensus 127 ~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~ 197 (304) T 4r5c_A 127 VFERLASLTTLNLSNNQLTSLPQGV-FERLTNLTTLNLSNNQLTSLPQGVFERLTNLTTL--------NLSNNQLTSLPQ 197 (304) T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCCCCT T ss_pred HhcCCcCCCEEECCCCccCccCHHH-HhCCCCCCEEECCCCcccccCHHHcCCCCCCCEE--------ECCCCccCccCH Confidence 57788 8999999999998877664 7889999999999886543 3446788899999 555555555443 Q ss_pred cccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCC Q FBpp0305286 297 FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 297 ~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) .... .+++|+.|++ +|.+..++ ....++.|++|++++|.+... T Consensus 198 ~~~~--~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~ 241 (304) T 4r5c_A 198 GVFE--RLTSLHTLDLSNNGITDIS-ALKNLDNLHTLDLSNNGITDI 241 (304) T ss_dssp TTTT--TCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC T ss_pred HHhc--CCCCCCEEECCCCCCCCch-hhcCCCcCCEEECCCCCcCCC Confidence 2222 5788999999 77666543 346678899999999988754No 47>4u7l_A LIG-1, leucine-rich repeats and immunoglobulin-like DOMA protein 1; stem cell marker, EGFR inhibition, signaling protein; HET: NAG; 2.30A {Homo sapiens} Probab=99.57 E-value=1.4e-15 Score=163.54 Aligned_cols=225 Identities=16% Similarity=0.075 Sum_probs=108.4 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCC------------CCCCCccccccccCCcchh Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLS------------RFHASPELSLHFCPLHMVK 160 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs------------~l~~L~~L~l~~~~l~~~~ 160 (559) +|....+...| .+|+..+.++++.+.++.+.......+ ...+.++++ .+.+++.|.+.+|.+... T Consensus 14 ~c~~~~l~~~p~~lp~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~lp~~~~~~~~L~~L~L~~n~i~~~- 91 (456) T 4u7l_A 14 DCGGRGLAALPGDLPSSTRSLNLSYNKLSEIDPAGFEDL-PNLQEVYLNNNELTAVPSLGAASSHVVSLFLQHNKIRSV- 91 (456) T ss_dssp ECTTSCCSSCCCCCCTTCCEEECCSSCCCCCCGGGCCSC-TTCCEEECCSSCCSSCCCCGGGGGGCCEEECCSSCCCCC- T ss_pred ECCCCCcCcCcCCCCCcccEEECCCCcccccCHHHhhCC-CcCCEEECCCCcCcccccccccCCCcCEEECCCCcceec- Confidence 34444555556 688878888888888755422111111 233333332 123344444444443311 Q ss_pred hhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC--CccEEEeecCcCCC Q FBpp0305286 161 LLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL--SCKTIFLAGNGLAK 238 (559) Q Consensus 161 ~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l--~L~~L~L~~N~l~~ 238 (559) ....+..+++|++|+|++|+++.++.. .+..+++|+.|+|++|+++.++. ..+.++ +|++|+|++|.+.. T Consensus 92 -----~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~ 163 (456) T 4u7l_A 92 -----EGSQLKAYLSLEVLDLSLNNITEVRNT--CFPHGPPIKELNLAGNRIGTLEL-GAFDGLSRSLLTLRLSKNRITQ 163 (456) T ss_dssp -----CHHHHTTCTTCCEEECCSSCCCEECGG--GSCSSSCCSEEECTTSCCCEECT-TTTGGGTTTCCEEECCSSCCCC T ss_pred -----CHHHccccCCCCEEECCCCcCCccCHh--hccCCCCCCEEECCCCCCCeeCH-HHhhhhhhcCCEEEeCCCCCcc Confidence 112234566666666666666555432 23555666666666666655442 244443 46666666666655 Q ss_pred cchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccc Q FBpp0305286 239 LSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQA 315 (559) Q Consensus 239 ~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~ 315 (559) ++.. +..+++|++|++++|.+. +...+..+++|+.| ++.+|.+..+...... ++++|+.|++ .|. T Consensus 164 l~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~ 231 (456) T 4u7l_A 164 LPVR--AFKLPRLTQLDLNRNRIRLIEGLTFQGLNSLEVL--------KLQRNNISKLTDGAFW--GLSKMHVLHLEYNS 231 (456) T ss_dssp CCTT--CCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE--------ECTTSCCCEECTTTTT--TCTTCCEEECCSSC T ss_pred CChh--hccCCCccEEECCCCccCccCHhHccCCccCCEE--------ECCCCcCCEeCHhhcc--CccCCCEEECCCCC Confidence 4433 334566666666655432 22234555566666 3333333332221111 3455555555 444 Q ss_pred eeeeecC-CcCccccceeecCCcccc Q FBpp0305286 316 MFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 316 l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) +...... ...++.|++|++++|.+. T Consensus 232 l~~~~~~~l~~l~~L~~L~l~~n~l~ 257 (456) T 4u7l_A 232 LVEVNSGSLYGLTALHQLHLSNNSIA 257 (456) T ss_dssp CSCBCGGGGTTCTTCCEEECTTSCCC T ss_pred ceecCHhhccCCCCCCEEECCCCccc Confidence 4333221 233455555555555554No 48>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Probab=99.57 E-value=3.4e-15 Score=160.70 Aligned_cols=176 Identities=14% Similarity=0.061 Sum_probs=132.3 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+..+ ....+.++++|++|+|++|+|+.++.. .+.++++|+.|+|++|+|+.++. ..|.+ T Consensus 75 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~ 145 (452) T 3zyi_A 75 SNTRYLNLMENNIQMI------QADTFRHLHHLEVLQLGRNSIRQIEVG--AFNGLASLNTLELFDNWLTVIPS-GAFEY 145 (452) T ss_dssp TTCSEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSBCCT-TTSSS T ss_pred CCCCEEECCCCcCCeE------CHhhhhCCccCCEeECCCCCCCccChh--hccCCcCCCEEECCCCcCCccCh-hhhhC Confidence 5677778878877643 122347899999999999999998754 35889999999999999998884 46888 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCc-C--CCchhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQL-G--ESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~-~--~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) + +|++|+|++|.+....... +..+++|+.|++++|. . .+...+..+++|+.|++++| .++.++.. . T Consensus 146 l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n--------~l~~~~~~-~ 215 (452) T 3zyi_A 146 LSKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--------NIKDMPNL-T 215 (452) T ss_dssp CTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS--------CCSSCCCC-T T ss_pred CCCCCEEECCCCcccccChhh-hhcCCcccEEeCCCCCCcCccChhhccCCCCCCEEECCCC--------cccccccc-c Confidence 9 9999999999999887766 8999999999999853 2 23456788999999955544 44444332 1 Q ss_pred Ccccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) .+++|+.|++ +|.+..+... +..++.|++|++++|.+.. T Consensus 216 ---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 256 (452) T 3zyi_A 216 ---PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452) T ss_dssp ---TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE T ss_pred ---ccCCcCEEECCCCcCCccChhhccCCcCCCeEECCCCccCe Confidence 4677777777 6666655332 3556777777777777653No 49>4fcj_A RAS GTPase-activating protein-binding protein 1; NTF2-like domain, hydrolase; 1.62A {Homo sapiens} SCOP: d.17.4.0 PDB: 4fcm_A 3q90_A 4iia_A Probab=99.56 E-value=2.4e-15 Score=136.89 Aligned_cols=131 Identities=17% Similarity=0.281 Sum_probs=104.9 Q ss_pred cCCCCCCccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhH Q FBpp0305286 277 QGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRA 356 (559) Q Consensus 277 ~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~ 356 (559) ++++.....+...|+++|+..+|. ++..|..+|.+++.+++..+.. ..+...+..|.. T Consensus 5 ~~~~~~~~~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~S~~s~~~~~~--------------------~~~~~~~~~G~~ 62 (142) T 4fcj_A 5 VMEKPSPLLVGREFVRQYYTLLNQ--APDMLHRFYGKNSSYVHGGLDS--------------------NGKPADAVYGQK 62 (142) T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEC-----------------------------CCCEEHHH T ss_pred eEcCCCHHHHHHHHHHHHHHHHHc--CHHHHHHhhhcCcEEEEecCCC--------------------CCceeeEeeCHH Confidence 445566668899999999999996 8999999999888888743210 011224567999 Q ss_pred HHHHHhhcCC--CCCcCCCceeeeeEeecCCEEEEEEcCceEEcCCCCCCCcceeeeEEEEecC--CCcEEEEccceEEe Q FBpp0305286 357 ALLLALSRLP--LMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSN--SPGWLITNDMLCIT 432 (559) Q Consensus 357 ~i~~~L~~LP--~t~h~lssl~vD~~~~~~~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~--n~~~~I~ND~l~i~ 432 (559) +|...|.+|| .++|++++ +|+++..++.++|+|+|.|++.+. ..|+|+|+|+|+|++ +++|+|.||+|+++ T Consensus 63 ~I~~~l~~lp~~~~~h~i~s--~D~q~~~~~~i~i~V~G~~~~~~~---~~r~F~qtFvL~p~~~~~~~~~I~nD~fr~~ 137 (142) T 4fcj_A 63 EIHRKVMSQNFTNCHTKIRH--VDAHATLNDGVVVQVMGLLSNNNQ---ALRRFMQTFVLAPEGSVANKFYVHNDIFRYQ 137 (142) T ss_dssp HHHHHHHHTCCCSCEEEEEE--EEEEECGGGCEEEEEEEEEECTTC---CCEEEEEEEEEEECSSSTTCEEEEEEEEEES T ss_pred HHHHHHHhCCCCceEEEEEE--EEEEEcCCCeEEEEEEEEEEECCC---CceEEEEEEEEEECCCCCCcEEEEeeEeEee Confidence 9999999999 78898876 588888788899999999998764 689999999999986 57899999999998 Q ss_pred eC Q FBpp0305286 433 ST 434 (559) Q Consensus 433 ~~ 434 (559) +. T Consensus 138 ~~ 139 (142) T 4fcj_A 138 DE 139 (142) T ss_dssp TT T ss_pred cc Confidence 64No 50>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Probab=99.56 E-value=1.1e-14 Score=162.31 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=111.7 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+.+|+.|.+.+|.+..+ ....+.++++|++|+|++|.|+.++.. +|..+++|+.|+|++|.|+.++. . T Consensus 95 ~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~~-~ 165 (597) T 3oja_B 95 FAYAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERNDLSSLPRG--IFHNTPKLTTLSMSNNNLERIED-D 165 (597) T ss_dssp TTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCT-T T ss_pred hcCCCCccEEECCCCcCCCC------CHHHhcCCCCCCEEEecCCcCCCcCHH--HHccCCCcCEEeCcCCcCCCCCh-h Confidence 34566677777777666532 222346777888888888888777654 34677888888888888776653 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCC---------------------------------------- Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCV---------------------------------------- 258 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~---------------------------------------- 258 (559) .|.++ +|++|+|++|.+.+.. +..+++|+.|+++. T Consensus 166 ~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~L~~ 241 (597) T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597) T ss_dssp TTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS T ss_pred hhcCCCCCCEEECCCCCCCCCC----cccccccceeeccccccccccCCcchhheecccCccccccccccccccEEECcC Confidence 56777 7888888888777654 23334443333333 Q ss_pred CcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecCCcCccccceeecCC Q FBpp0305286 259 QLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNR 336 (559) Q Consensus 259 N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~ 336 (559) |.+.....+..+++|+.| ++++|.+..... .+. ++++|+.|++ +|.+..++.....++.|++|++++ T Consensus 242 n~l~~~~~l~~l~~L~~L--------~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~Ls~ 310 (597) T 3oja_B 242 NNLTDTAWLLNYPGLVEV--------DLSYNELEKIMYHPFV---KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310 (597) T ss_dssp SCCCCCGGGGGCTTCSEE--------ECCSSCCCEEESGGGT---TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS T ss_pred CCCCCchhhhcCCCCcEE--------eCcCcccccCChhHhh---CCCCCCEEECCCCCCCCccccccCCCCCCEEECCC Confidence 322222334455556666 444455544432 232 5778888888 777777765556678888888888 Q ss_pred ccccC Q FBpp0305286 337 NQKRQ 341 (559) Q Consensus 337 N~i~~ 341 (559) |.+.. T Consensus 311 N~l~~ 315 (597) T 3oja_B 311 NHLLH 315 (597) T ss_dssp SCCCC T ss_pred Ccccc Confidence 88764No 51>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 4fho_A Probab=99.55 E-value=2.1e-14 Score=146.60 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=126.3 Q ss_pred cccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCC Q FBpp0305286 137 TLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLG 216 (559) Q Consensus 137 ~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~ 216 (559) ...+..+.+++.|.+.+|.+..+. .+..+++|++|+|++|+++.++. +..+++|+.|+|++|+++.++ T Consensus 34 ~~~~~~l~~L~~L~l~~~~i~~~~--------~~~~l~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~l~~~~ 101 (308) T 1h6u_A 34 TVTQADLDGITTLSAFGTGVTTIE--------GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVS 101 (308) T ss_dssp EECHHHHHTCCEEECTTSCCCCCT--------TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCG T ss_pred cccHhHhcCccEEEccCCCcccch--------hhhccCCCCEEEccCCccCCChH----HhCCCCCCEEEecCCCcCCch Confidence 344556777888888777766442 12568888888888888888766 377888888888888888763 Q ss_pred ccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 217 ELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 217 ~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) .+..+ +|++|+|++|.+.+... +..+++|+.|++++|.+.....+..+++|+.| ++++|.++..+ T Consensus 102 ---~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L--------~l~~n~l~~~~ 167 (308) T 1h6u_A 102 ---AIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISPLAGLTNLQYL--------SIGNAQVSDLT 167 (308) T ss_dssp ---GGTTCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEE--------ECCSSCCCCCG T ss_pred ---HHhCCCCCCEEEccCCCCCcchh---hcCCCCCCEEECCCCCCccChhhcCCCCCCEE--------EeeCCccccCh Confidence 56777 88888888888887665 67888888888888866555447778888888 44444444444 Q ss_pred ccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCC Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) . +. .+++|+.|++ +|.+..++. ...++.|++|++++|.+... T Consensus 168 ~-~~---~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~ 210 (308) T 1h6u_A 168 P-LA---NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (308) T ss_dssp G-GT---TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC T ss_pred h-hc---CCCCCCEEECCCCcCCCChh-hhcCCCCCEEECcCCccccc Confidence 3 22 5788888888 676666554 56677888888888877643No 52>4r6f_A Leucine rich repeat DLRR_I; leucine rich motifs, de novo protein; 1.73A {Synthetic construct} PDB: 4r6j_A Probab=99.55 E-value=1.6e-14 Score=148.10 Aligned_cols=128 Identities=25% Similarity=0.232 Sum_probs=61.7 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+++|+.|.+.+|.+..+ ....+.++++|++|+|++|+++.++.. .+.++++|+.|+|++|+++.++. . T Consensus 81 ~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 151 (331) T 4r6f_A 81 LKELTNLGWLNLSNNQLETL------PQGVFEKLTNLTTLNLSNNQLTSLPQG--VFERLASLTTLNLSNNNIANIND-Q 151 (331) T ss_dssp GTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCCCBCCT-T T ss_pred ccCCCcCCEEEccCCcccee------CHHHHhcCCCCCEEECCCCccCcCChh--hhccCCCCCEEECCCCCCCCcCH-H Confidence 33455555555555544421 111234556666666666666555432 23455566666666666555442 2 Q ss_pred ccCCC-CccEEEeecCcCCCcchh-------HHhccCCCccEEeCCCCcCCC--chhccCCCCcccc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVD-------VIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQL 276 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~-------~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L 276 (559) .+.++ +|++|++++|.+...... ..+..+++|+.|++++|.... ...+..+++|+.| T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 218 (331) T 4r6f_A 152 MLEGLTNLTTLNLSHNNLARLWKHANPGGPIYFLKGLTNLTTLNLSSNGFDEIPREVFKDLTSLTTL 218 (331) T ss_dssp SSTTCTTCCEEECCSSCCGGGGCTTSTTCCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE T ss_pred HhccCCCCCEEECCCCCcChhhcccccccchhhhcccccccEEECCCCccCcCCHHHhccCCCCCEE Confidence 34555 555555555555432110 013344555555555553321 1224445555555No 53>4r6f_A Leucine rich repeat DLRR_I; leucine rich motifs, de novo protein; 1.73A {Synthetic construct} PDB: 4r6j_A Probab=99.55 E-value=3.3e-14 Score=145.81 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=115.2 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) ++.+++++.|.+.+|.+..+. .+..+++|++|+|++|+++.++.. .+.++++|+.|+|++|+++.++. . T Consensus 59 l~~l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 127 (331) T 4r6f_A 59 IQYLPNVRYLALGGNKLHDIS--------ALKELTNLGWLNLSNNQLETLPQG--VFEKLTNLTTLNLSNNQLTSLPQ-G 127 (331) T ss_dssp GGGCTTCCEEECTTSCCCCCG--------GGTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCT-T T ss_pred cccCCCccEEECCCCCccccc--------cccCCCcCCEEEccCCccceeCHH--HHhcCCCCCEEECCCCccCcCCh-h Confidence 445666677777666655321 235677788888888877776653 24677788888888887777663 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC----------chhccCCCCcccccCCCCCCccchh Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES----------TEAVDNIPKSQQLQGGGTNGLKFCQ 288 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~----------~~~~~~lp~Lk~L~l~~~~l~~L~~ 288 (559) .+.++ +|++|++++|.+.+..+.. +..+++|+.|++++|.... ...+..+++|+.| ++++ T Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L--------~l~~ 198 (331) T 4r6f_A 128 VFERLASLTTLNLSNNNIANINDQM-LEGLTNLTTLNLSHNNLARLWKHANPGGPIYFLKGLTNLTTL--------NLSS 198 (331) T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTS-STTCTTCCEEECCSSCCGGGGCTTSTTCCCCTTTTCTTCCEE--------ECCS T ss_pred hhccCCCCCEEECCCCCCCCcCHHH-hccCCCCCEEECCCCCcChhhcccccccchhhhcccccccEE--------ECCC Confidence 56777 7888888888777766654 6777788888887774421 1124556777777 4444 Q ss_pred hhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 289 DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 289 n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) |.+..++..... ++++|+.|++ +|.+..+... ...++.|++|++++|.+. T Consensus 199 n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 250 (331) T 4r6f_A 199 NGFDEIPREVFK--DLTSLTTLNLSNNNIANINDQMLEGLTNLTTLNLSHNNLA 250 (331) T ss_dssp SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG T ss_pred CccCcCCHHHhc--cCCCCCEEECCCCccCcCCHHHHhccccCCEEECCCCchh Confidence 444444432111 4677777777 6666655433 355677777777777765No 54>4tzh_A LIC12234; LRR protein, pathogen, virulence factor, unknown function; 1.39A {Leptospira interrogans} Probab=99.54 E-value=1.5e-14 Score=136.89 Aligned_cols=170 Identities=19% Similarity=0.180 Sum_probs=127.4 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+++++.|.+.+|.+..+ +. .+..+++|++|+|++|+|+.++.. +..+++|+.|+|++|+++.++. T Consensus 14 l~~~~~L~~L~l~~n~l~~~---~~----~~~~l~~L~~L~l~~n~i~~l~~~---~~~l~~L~~L~l~~n~l~~l~~-- 81 (190) T 4tzh_A 14 LKTPNEVQILDLSRNQLTIL---PK----EIEQLVNLESLHLRDNELTTLPEE---IGILKNLKYLDISRNQISNFPK-- 81 (190) T ss_dssp TTSGGGCCEEECTTSCCSSC---CG----GGGGCTTCCEEECCSSCCSSCCGG---GGGCTTCCEEECCSSCCCCCCG-- T ss_pred hhccccCcEEECCCCcceeC---Ch----hHhcCCCcCEEECCCCcceeCchh---hcCCCCCCEEECCCCcccccch-- Confidence 45567777777777776622 22 236889999999999999988654 4789999999999999998875 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhccc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) .+..+ +|++|++++|.+...+.. +..+++|+.|++++|.+... ..+..+++|+.| ++++|.++.++.. T Consensus 82 ~~~~l~~L~~L~l~~n~l~~l~~~--~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L--------~l~~n~l~~l~~~ 151 (190) T 4tzh_A 82 EIQKLKNLEVLFLNGNSLSNLPEE--IGELEKLGILYLNNNQLTTLPKEIGQLENLVSL--------SLSSNKLTSIPDE 151 (190) T ss_dssp GGGGCTTCCEEECCSSCCSCCCGG--GGGCTTCCEEECCSSCCSCCCGGGGGCTTCCEE--------ECCSSCCCCCCGG T ss_pred hHhcCCCcCEEEcCCCCCccchhh--hhcCcCCCEEEcCCCCCccchHHHhCCccCCEE--------ECCCCCcchhhHH Confidence 57888 999999999999977443 78999999999999976543 457789999999 5555555555544 Q ss_pred ccCcccccccccccc-ccceeeeecC-CcCccccceeec Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLY 334 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~l 334 (559) +. .+++|+.|++ +|.+...+.. ...++.++.+++ T Consensus 152 l~---~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 187 (190) T 4tzh_A 152 LG---QLKKLRILNLWDNPTLTTPERNIRKLFRNQEITI 187 (190) T ss_dssp GG---GCTTCCEEECCSCTTCCSCHHHHHHHTSSSCCEE T ss_pred Hh---cccCCCEEeCcCCCCcccChHHHhhhhhhccEEE Confidence 43 5889999999 7777665433 234455555544No 55>4rca_B SLIT and NTRK-like protein 1; leucine rich-repeat, IG-like domain, synaptic adhesion, SIGN protein; HET: NAG; 2.99A {Homo sapiens} Probab=99.54 E-value=1.2e-14 Score=143.78 Aligned_cols=164 Identities=13% Similarity=0.074 Sum_probs=130.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+|+.+.+. .+..+++|+.|+|++|.++.+.. ..+.++ +|++|+|++|.+.+..... +..++ T Consensus 36 ~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 111 (251) T 4rca_B 36 APTSQFYHLFLHGNSLTRLFPN--EFANFYNAVSLHMENNGLHEIVP-GAFLGLQLVKRLHINNNKIKSFRKQT-FLGLD 111 (251) T ss_dssp CCSSCCEEEECTTSCCCEECTT--TTGGGTTEEEEECCSSCCCEECT-TTTTTCCSCCEEECCSSCCCEECTTT-TTTCS T ss_pred CCCCceeEEECCCCccCccChh--hcccCCCCCEEECCCCcCCEeCH-hhcCCCccCCEEECCCCccCccChhh-ccCCc Confidence 5678999999999999987433 24788999999999999998752 478888 9999999999999887766 88999 Q ss_pred CccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC--Cc Q FBpp0305286 250 QLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP--VQ 324 (559) Q Consensus 250 ~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~--~~ 324 (559) +|+.|++++|.+. ....+..+++|+.| ++++|.++.++..+. .+++|+.|++ .|.+..++.. .. T Consensus 112 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~l~~~~~---~~~~L~~L~L~~N~l~~~~~~~~~~ 180 (251) T 4rca_B 112 DLEYLQADFNLLRDIDPGAFQDLNKLEVL--------ILNDNLISTLPANVF---QYVPITHLDLRGNRLKTLPYEEVLE 180 (251) T ss_dssp SCCEEECCSSCCCEECGGGSTTCTTCCEE--------ECCSSCCCCCCTTTT---TTCCCCEEECCSSCCCCCCCCCCCT T ss_pred cCCEEECCCCCCCccCHhHhcCCcCCCEE--------ECCCCccCccCHhHc---CcCCCCEEECCCCcCeEecHHHhhh Confidence 9999999999664 34567889999999 556666665555433 4788999999 8888777633 35 Q ss_pred CccccceeecCCccccCCChhhhhh Q FBpp0305286 325 LNYVYGYKLYNRNQKRQHSSFAQNA 349 (559) Q Consensus 325 ~~~~L~~L~ls~N~i~~~~~~~rl~ 349 (559) .++.|++|++++|++.+.+....+. T Consensus 181 ~l~~L~~L~l~~N~~~c~c~l~~l~ 205 (251) T 4rca_B 181 QIPGIAEILLEDNPWDCTCDLLSLK 205 (251) T ss_dssp TCTTCSEEECCSCCEECSTTTHHHH T ss_pred ccCceeEEEEeCCCcccCCcchHHH Confidence 6789999999999999877665443No 56>4p8s_A Reticulon-4 receptor-like 2; NOGO receptor, myelin associated glycoprotein, membrane PROT; HET: NAG NDG; 1.80A {Rattus norvegicus} SCOP: c.10.2.0 PDB: 4p91_A* Probab=99.54 E-value=3.7e-14 Score=142.60 Aligned_cols=179 Identities=13% Similarity=0.059 Sum_probs=137.7 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCC-CCCCCccCc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANR-IQDLGELNY 220 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~-L~~l~~l~~ 220 (559) -..+++.|.+.++.+..+.. .. ..++|++|+|++|+|+.+.+. .+..+++|+.|+|++|+ ++.++. .. T Consensus 30 ~~~~l~~L~l~~n~i~~~~~------~~--~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~~~-~~ 98 (282) T 4p8s_A 30 LPPSTQRLFLQNNLIRSLRP------GT--FGPNLLTLWLFSNNLSTIYPG--TFRHLQALEELDLGDNRHLRSLEP-DT 98 (282) T ss_dssp CCTTCCEEECCSSCCCEECT------TS--SCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCCCTTCCCCCT-TT T ss_pred cCcCCcEEEcCCCccceeCc------cc--ccccCcEEECCCCcCCeeCHH--HhhCcccCCEEeCCCCCccCcCCc-cc Confidence 34677888888887764311 11 128999999999999987443 35889999999999998 888752 47 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhccc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) +.++ +|++|+|++|.+...+... +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.++.++.. T Consensus 99 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~~ 169 (282) T 4p8s_A 99 FQGLERLQSLHLYRCQLSSLPGNI-FRGLVSLQYLYLQENSLLHLQDDLFADLANLSHL--------FLHGNRLRLLTEH 169 (282) T ss_dssp TTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE--------ECTTSCCCEECTT T ss_pred cCCCCCCCEEECCCCcCCccCHHH-HcCCCCCCEEECCCCccCeeCHHHhcCCccCCEE--------ECCCCcCcEeCHH Confidence 8888 9999999999999887765 7889999999999996643 3457889999999 5555555555443 Q ss_pred ccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCC Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~ 342 (559) ... .+++|+.|++ .|.+..+... +..++.|++|++++|.++.. T Consensus 170 ~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (282) T 4p8s_A 170 VFR--GLGSLDRLLLHGNRLQGVHRAAFHGLSRLTILYLFNNSLASL 214 (282) T ss_dssp TTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC T ss_pred HcC--CcccCCEEECCCCCcCccCHhHhcCCCCCCEEECcCCccccc Confidence 222 5889999999 7888776543 46678999999999998754No 57>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 4fho_A Probab=99.54 E-value=3.8e-14 Score=144.59 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=136.7 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+.+|+.|.+.+|.+..... +..+++|++|+|++|+++.++. +..+++|+.|+|++|+++.++. T Consensus 59 ~~~l~~L~~L~l~~n~i~~~~~--------~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~-- 124 (308) T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--------LKNLTKITELELSGNPLKNVSA----IAGLQSIKTLDLTSTQITDVTP-- 124 (308) T ss_dssp GGGCTTCCEEECCSSCCCCCGG--------GTTCCSCCEEECCSCCCSCCGG----GTTCTTCCEEECTTSCCCCCGG-- T ss_pred hhccCCCCEEEccCCccCCChH--------HhCCCCCCEEEecCCCcCCchH----HhCCCCCCEEEccCCCCCcchh-- Confidence 4567788888888887764421 4789999999999999998743 3789999999999999998774 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) +..+ +|++|+|++|.+.+... +..+++|+.|++++|.+.....+..+++|+.| ++++|.+...+. + T Consensus 125 -~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L--------~l~~n~l~~~~~-~ 191 (308) T 1h6u_A 125 -LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL--------KADDNKISDISP-L 191 (308) T ss_dssp -GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEE--------ECCSSCCCCCGG-G T ss_pred -hcCCCCCCEEECCCCCCccChh---hcCCCCCCEEEeeCCccccChhhcCCCCCCEE--------ECCCCcCCCChh-h Confidence 7888 99999999999988775 78899999999999977665557889999999 445555544443 2 Q ss_pred cCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCC Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) . .+++|+.|++ .|.+..+.. ...++.|++|++++|.+... T Consensus 192 ~---~~~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~ 232 (308) T 1h6u_A 192 A---SLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ 232 (308) T ss_dssp G---GCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC T ss_pred h---cCCCCCEEECcCCccccccc-cccCCceeEEEecCCCcccc Confidence 2 6889999999 777766654 67778999999999998743No 58>4u7l_A LIG-1, leucine-rich repeats and immunoglobulin-like DOMA protein 1; stem cell marker, EGFR inhibition, signaling protein; HET: NAG; 2.30A {Homo sapiens} Probab=99.54 E-value=2.4e-14 Score=153.89 Aligned_cols=193 Identities=12% Similarity=-0.004 Sum_probs=95.1 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+.+|+.|.+.+|.+... ....+..+++|++|+|++|+++.+... .+..+++|+.|+|++|+++.++. ..+ T Consensus 194 ~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~ 264 (456) T 4u7l_A 194 GLNSLEVLKLQRNNISKL------TDGAFWGLSKMHVLHLEYNSLVEVNSG--SLYGLTALHQLHLSNNSIARIHR-KGW 264 (456) T ss_dssp TCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCSCBCGG--GGTTCTTCCEEECTTSCCCCBCS-GGG T ss_pred CCccCCEEECCCCcCCEe------CHhhccCccCCCEEECCCCCceecCHh--hccCCCCCCEEECCCCcccccCH-hHh Confidence 345566666665555422 111224455556666666555554332 23455555555555555554432 234 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCc-------------- Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGL-------------- 284 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~-------------- 284 (559) ..+ +|++|+|++|.+.+..+.. +..+++|+.|++++|.+. ....+..+++|+.|++++|.+. T Consensus 265 ~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 343 (456) T 4u7l_A 265 SFCQKLHELVLSFNNLTRLDEES-LAELSSLSVLRLSHNSISHIAEGAFKGLRSLRVLDLDHNEISGTIEDTSGAFSGLD 343 (456) T ss_dssp GGCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCHHHHTCCCTTTTCT T ss_pred ccCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCCcCCccChhhhhCccCCCEEECCCCccCccccCcchhhcCCc Confidence 444 5555555555555544433 444555555555554332 1223444445555533333221 Q ss_pred -----cchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCChhh Q FBpp0305286 285 -----KFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFA 346 (559) Q Consensus 285 -----~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~ 346 (559) ++++|.+......... ++++|+.|++ +|.+..+... +..++.|++|++++|++.|.+... T Consensus 344 ~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~l~ 410 (456) T 4u7l_A 344 SLSKLTLFGNKIKSVAKRAFS--GLEGLEHLNLGGNAIRSVQFDAFVKMKNLKELHISSDSFLCDCQLK 410 (456) T ss_dssp TCCEEECTTSCCCEECGGGGT--TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEEEEEEEECSTTTT T ss_pred ccCEeECCCCcCCCcCHHHcc--CCCCCCEEECCCCcCCccCHHHHhcCcCCCEEECCCCCccCCCCch Confidence 3334444443222111 4666777777 6666555432 345667777777777776655443No 59>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Probab=99.53 E-value=3.1e-14 Score=149.39 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=112.3 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+.+|+.|.+.+|.+... ....+..+++|++|+|++|.++.++.. ++..+++|+.|+|++|.++.++. . T Consensus 89 ~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 159 (390) T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYL------PPHVFQNVPLLTVLVLERNDLSSLPRG--IFHNTPKLTTLSMSNNNLERIED-D 159 (390) T ss_dssp TTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCT-T T ss_pred ccccCcccEEECCCCccCcC------CHHHhccCCcCcEEECCCCcCCccCHh--HhcCCCCCCEEECCCCcCCccCh-H Confidence 34566677777776665532 112236778888888888888877654 34677888888888888876653 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCC----------------------------------------ccEEeCCC Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ----------------------------------------LKNVHGCV 258 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~----------------------------------------L~~Ldl~~ 258 (559) .+.++ +|++|++++|.+.... +..+++ |+.|++++ T Consensus 160 ~l~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~ 235 (390) T 3o6n_A 160 TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 235 (390) T ss_dssp TTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCS T ss_pred HcCCcCCCCEEECCCCcccccC----ccccCccCEEecccccccccCCCcceeEEECCCCceeeecCccCCcccEEECCC Confidence 56777 7888888888776653 233333 34444444 Q ss_pred CcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecCCcCccccceeecCC Q FBpp0305286 259 QLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNR 336 (559) Q Consensus 259 N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~ 336 (559) |.......+..+++|+.| ++++|.+..... .+. .+++|+.|++ +|.+..++.....++.|++|++++ T Consensus 236 n~l~~~~~l~~~~~L~~L--------~l~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~ 304 (390) T 3o6n_A 236 NNLTDTAWLLNYPGLVEV--------DLSYNELEKIMYHPFV---KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 304 (390) T ss_dssp SCCCCCGGGGGCTTCSEE--------ECCSSCCCEEESGGGT---TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS T ss_pred CCCCCcHHhccCCcCcEE--------ECCCCCcCccChHHhc---ccCCcCEEECCCCccccccccCCCCCcccEEECCC Confidence 433333344555666666 344444444322 222 5778888888 777777766566678888888888 Q ss_pred ccccC Q FBpp0305286 337 NQKRQ 341 (559) Q Consensus 337 N~i~~ 341 (559) |.+.. T Consensus 305 n~l~~ 309 (390) T 3o6n_A 305 NHLLH 309 (390) T ss_dssp SCCCC T ss_pred Cceee Confidence 88764No 60>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 4aw4_A 1d0b_A 1otn_A 1oto_A 1otm_A Probab=99.53 E-value=3.7e-14 Score=143.80 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=141.8 Q ss_pred ccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCC Q FBpp0305286 136 RTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDL 215 (559) Q Consensus 136 ~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l 215 (559) ....++.+.+++.|.+.+|.+..+. .+..+++|++|+|++|+|+.++. +..+++|+.|+|++|+++.+ T Consensus 38 ~~~~~~~l~~L~~L~l~~~~i~~~~--------~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~ 105 (291) T 1h6t_A 38 DAVTQNELNSIDQIIANNSDIKSVQ--------GIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDL 105 (291) T ss_dssp SEECHHHHHTCCEEECTTSCCCCCT--------TGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCG T ss_pred cccchhhhCcccEEeCcCCCcCcch--------hHhcCCCCCEEEccCCCCCcChh----hccCCCCCEEEccCCcCCCC Confidence 3445567888889999888877542 13678999999999999999876 37899999999999999987 Q ss_pred CccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhh Q FBpp0305286 216 GELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSY 294 (559) Q Consensus 216 ~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~ 294 (559) +. +..+ +|++|+|++|.+.+.. . +..+++|+.|++++|.+.....+..+++|+.| ++++|.+... T Consensus 106 ~~---l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L--------~l~~n~l~~~ 171 (291) T 1h6t_A 106 SS---LKDLKKLKSLSLEHNGISDIN--G-LVHLPQLESLYLGNNKITDITVLSRLTKLDTL--------SLEDNQISDI 171 (291) T ss_dssp GG---GTTCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE--------ECCSSCCCCC T ss_pred hh---HcCCCCCCEEEccCCcCCcCh--h-hcCCCcCCEEEccCCcCCCcHHHcCCCCCCEE--------ECCCCccCCC Confidence 63 7888 9999999999999864 3 78999999999999987777778899999999 4445555444 Q ss_pred cccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCC Q FBpp0305286 295 YTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 295 ~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) .. +. .+++|+.|++ .|.+..+ .....++.|++|++++|.+... T Consensus 172 ~~-~~---~l~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~n~~~~~ 215 (291) T 1h6t_A 172 VP-LA---GLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 215 (291) T ss_dssp GG-GT---TCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEECC T ss_pred hh-Hc---CCCCCCEEEccCCcCCCC-hhhccCCCCCEEECcCCccccC Confidence 33 22 6899999999 7877776 3356788999999999998743No 61>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Probab=99.53 E-value=1.9e-14 Score=160.31 Aligned_cols=146 Identities=17% Similarity=0.198 Sum_probs=76.5 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|....++..| .+|...+.++++.+.+..+.. -.++++++|+.|.+.+|.+..+ ....+.+ T Consensus 18 ~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~------------~~~~~l~~L~~L~Ls~n~i~~~------~~~~~~~ 79 (606) T 3t6q_A 18 NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQN------------TTFSRLINLTFLDLTRCQIYWI------HEDTFQS 79 (606) T ss_dssp ECTTSCCSSCCTTSCTTCCEEECTTCCCSEECT------------TTSTTCTTCSEEECTTCCCCEE------CTTTTTT T ss_pred ecccCCcCcCcccCCCCCcEEECCCCcccccCh------------hhhcccccccEeeCCCCccCcc------ChhhccC Confidence 55666666667 788888888988887754422 2344455555555555544421 1112345 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) +++|++|+|++|+++.+.+. .+.++++|+.|+|++|+|+.++. ..+.++ +|++|+|++|.+.+..... +..+++| T Consensus 80 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L 155 (606) T 3t6q_A 80 QHRLDTLVLTANPLIFMAET--ALSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKL 155 (606) T ss_dssp CTTCCEEECTTCCCSEECTT--TTSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTC T ss_pred cccCCEEECCCCccccCChh--hcccccccCEEecccCCcccccc-ccccccCcccEEECCCCccccccccc-cccCCCC Confidence 55555555555555554322 13455555555555555555432 234555 5555555555555532222 2225555 Q ss_pred cEEeCCCCcC Q FBpp0305286 252 KNVHGCVQLG 261 (559) Q Consensus 252 ~~Ldl~~N~~ 261 (559) +.|++++|.+ T Consensus 156 ~~L~L~~n~i 165 (606) T 3t6q_A 156 KVLDFQNNAI 165 (606) T ss_dssp CEEECCSSCC T ss_pred CeEECCCCcc Confidence 5555555543No 62>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 4c2a_B 4c2b_B* 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Probab=99.53 E-value=3e-14 Score=144.48 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=140.5 Q ss_pred EEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccE Q FBpp0305286 100 VRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTS 178 (559) Q Consensus 100 l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~ 178 (559) +...| .+|+..+.++++.+.+..+ ..-.+..+.+|+.|.+.+|.+..+... ..+++|++ T Consensus 22 l~~ip~~~~~~l~~L~Ls~n~l~~~------------~~~~l~~l~~L~~L~L~~n~l~~~~~~--------~~~~~L~~ 81 (290) T 1p9a_G 22 LTALPPDLPKDTTILHLSENLLYTF------------SLATLMPYTRLTQLNLDRAELTKLQVD--------GTLPVLGT 81 (290) T ss_dssp CSSCCSCCCTTCCEEECTTSCCSEE------------EGGGGTTCTTCCEEECTTSCCCEEECC--------SCCTTCCE T ss_pred CCcCCCCCCccCCEEECCCCcCCcC------------CHHHhhcCCCcCEEECCCCcCCcccCC--------CCCCcCCE Confidence 33444 6777777778777766322 223456778889999988887754211 57899999 Q ss_pred EEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCC Q FBpp0305286 179 LVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGC 257 (559) Q Consensus 179 L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~ 257 (559) |+|++|+|+.++.. +..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+...++.. +..+++|+.|+++ T Consensus 82 L~L~~n~l~~l~~~---~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~ 156 (290) T 1p9a_G 82 LDLSHNQLQSLPLL---GQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEKLSLA 156 (290) T ss_dssp EECCSSCCSSCCCC---TTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECT T ss_pred EECCCCCccccCcc---cccCCCCcEEEccCCccCEecc-chhcCCCCCCEEECCCCcCCcCChhh-cccccCCCEEECC Confidence 99999999988764 5889999999999999998873 478999 9999999999999988765 8899999999999 Q ss_pred CCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccce Q FBpp0305286 258 VQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAM 316 (559) Q Consensus 258 ~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l 316 (559) +|.+.. ...+..+++|+.| ++++|.++.++..+. ...+|+.|++ +|.+ T Consensus 157 ~n~l~~~~~~~~~~l~~L~~L--------~L~~N~l~~i~~~~~---~~~~L~~l~L~~Np~ 207 (290) T 1p9a_G 157 NNNLTELPAGLLNGLENLDTL--------LLQENSLYTIPKGFF---GSHLLPFAFLHGNPW 207 (290) T ss_dssp TSCCSCCCTTTTTTCTTCCEE--------ECCSSCCCCCCTTTT---TTCCCSEEECCSCCB T ss_pred CCcccccCHHHhcccCCCCEE--------ECCCCcCcccChhhc---cccccCeEEecCCCc Confidence 997653 3457789999999 666666666655443 4678999999 5543No 63>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 3ulu_A* 3ulv_A* 2a0z_A* 3cig_A* 3ciy_A* Probab=99.53 E-value=6.3e-15 Score=166.56 Aligned_cols=236 Identities=16% Similarity=0.116 Sum_probs=133.2 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCC-------------CCCCCccccccccCCcch Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLS-------------RFHASPELSLHFCPLHMV 159 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs-------------~l~~L~~L~l~~~~l~~~ 159 (559) +|....+...| .+|+..+.++++.+.+..+.......+ ...+.++|+ ++++|+.|.+.+|.+... T Consensus 10 ~cs~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 88 (680) T 1ziw_A 10 DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680) T ss_dssp ECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC T ss_pred EcCCCCccccCcccCCCCcEEECCCCcCCccCHHHcCCC-cCCCEEECCCCccCccChhHhhcCCCCCEEECCCCccccC Confidence 56666666666 688888888998888765543222222 344444443 245566666666655421 Q ss_pred hhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCC Q FBpp0305286 160 KLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAK 238 (559) Q Consensus 160 ~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~ 238 (559) ....++++++|++|+|++|+++.+.+. .+..+++|+.|+|++|+++... ...+..+ +|++|+|++|.+.+ T Consensus 89 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 159 (680) T 1ziw_A 89 ------SDKTFAFCTNLTELHLMSNSIQKIKNN--PFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQA 159 (680) T ss_dssp ------CTTTTTTCTTCSEEECCSSCCCCCCSC--TTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCC T ss_pred ------CHhhhccCCCCCEEECCCCCcCccCHH--HccCCCCCcEEECCCCcccccC-chhccccCCCCEEECCCCcccc Confidence 112335667777777777777765432 2366777777777777777544 2356666 77777777777776 Q ss_pred cchhHHhc--cCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCc-------------------cchhhhhhhhc Q FBpp0305286 239 LSVDVIRK--MLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGL-------------------KFCQDFISSYY 295 (559) Q Consensus 239 ~~~~~il~--~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~-------------------~L~~n~L~~~~ 295 (559) ..+.. +. ..++|+.|++++|... .+..+..+++|+.|++.++.+. ++++|.+.... T Consensus 160 ~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680) T 1ziw_A 160 LKSEE-LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680) T ss_dssp BCHHH-HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC T ss_pred cChhH-hhcccCCCCCEEECCCCccceechhhcccccccceeccCCCcCChhhhhhhhhccccCcccEEEccCCcccccC Confidence 65543 32 3466777777777443 2334555555555555444221 12233333322 Q ss_pred ccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) .....+-.+++|+.|++ .|.+..+... +..++.|++|++++|.+. T Consensus 239 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680) T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680) T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS T ss_pred hhhhcccCCCCCcEEECCCCccCccChhhhhcCcccCEEEccCCccc Confidence 21111002356777777 5655554322 355677777777777765No 64>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} SCOP: d.17.4.0 Probab=99.53 E-value=9.4e-15 Score=129.10 Aligned_cols=113 Identities=22% Similarity=0.431 Sum_probs=97.0 Q ss_pred cchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhhc Q FBpp0305286 285 KFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSR 364 (559) Q Consensus 285 ~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~~ 364 (559) .+...|+++|+..++. ++..|..+|.+++.++... .....|..+|...|.+ T Consensus 5 ~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~s~~~~~~---------------------------~~~~~G~~~I~~~l~~ 55 (120) T 3ujm_A 5 SVGREFVRQYYTLLNK--APNHLHRFYNHNSSYIHGE---------------------------SKLVVGQREIHNRIQQ 55 (120) T ss_dssp CHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEETT---------------------------CCCEESHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHcc--CHHHHHhhccCCceEEecC---------------------------CcEeeCHHHHHHHHHh Confidence 6678899999999996 8999999999887666420 1346799999999999 Q ss_pred CC--CCCcCCCceeeeeEeecCCEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCCCcEEEEccceEE Q FBpp0305286 365 LP--LMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNSPGWLITNDMLCI 431 (559) Q Consensus 365 LP--~t~h~lssl~vD~~~~~~~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n~~~~I~ND~l~i 431 (559) || .++|++.+ +|+++..++.++|+|+|.|++.+. +.|+|+|+|+|+|+++++|+|.||++++ T Consensus 56 Lp~~~~~h~i~s--vD~q~~~~~~ili~V~G~~~~~~~---~~~~F~qtF~L~p~~~~~~~I~nD~fr~ 119 (120) T 3ujm_A 56 LNFNDCHAKISQ--VDAQATLGNGVVVQVTGELSNDGQ---PMRRFTQTFVLAAQSPKKYYVHNDIFRY 119 (120) T ss_dssp HCCCSCEEEEEE--EEEEEEGGGEEEEEEEEEEESTTC---CCEEEEEEEEEEECSTTCEEEEEEEEEE T ss_pred CCCCCcEEEEEE--EEEEEcCCCcEEEEEEEEEEECCC---CCceEEEEEEEEECCCCCEEEEEEEEEc Confidence 99 77888875 799999989999999999998653 6899999999999876789999999986No 65>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} PDB: 4oqt_A* Probab=99.52 E-value=3.4e-14 Score=153.84 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=82.4 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) .++.+|+.|.+.+|.+... ....+.++++|++|+|++|+|+.++.. .+.++++|+.|+|++|+|+.++. .. T Consensus 101 ~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~ 171 (477) T 2id5_A 101 TGLSNLTKLDISENKIVIL------LDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTSIPT-EA 171 (477) T ss_dssp TTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSSCCH-HH T ss_pred cCCCCCCEEECCCCccccc------CHhHccCCCCCCEEECCCCCccEeCHH--HccCchhCCEEECcCCCCceech-hh Confidence 4567788888888877632 223457889999999999999987653 35789999999999999998873 46 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCC Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQ 259 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N 259 (559) +..+ +|++|+|++|.+....... +..+++|+.|++++| T Consensus 172 l~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~~ 210 (477) T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHW 210 (477) T ss_dssp HTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECC T ss_pred HhhCCCCcEEeCCCCCcCccChhh-cccCCCCCEEECCCC Confidence 7888 8999999999888766544 666666666666554No 66>4u06_A LIC10831; unknown function, LRR protein, pathogen, virulence factor; HET: MSE; 1.90A {Leptospira interrogans serovar copenhafiocruz l1-130} Probab=99.51 E-value=8.8e-14 Score=143.69 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=76.6 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+++.++.. +..+++|+.|+|++|.++.++. .+.++ +|++|++++|.+...... +..++ T Consensus 56 ~~l~~L~~L~l~~n~l~~l~~~---~~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~--~~~l~ 128 (344) T 4u06_A 56 EQLKNLQLLYLRSNRLTTLPKE---IEQLKNLQVLDLGSNQLTVLPQ--EIGQLKNLQLLYLHSNRLTTLSKD--IEQLQ 128 (344) T ss_dssp GGCTTCCEEECCSSCCCCCCGG---GGGCTTCCEEECCSSCCSCCCG--GGGGCTTCCEEECCSSCCSSCCGG--GGGCT T ss_pred ccCCCcCEEECcCCccCcCChh---HhcCCCCCEEECCCCCCccCCH--hHhcCCCCCEEECCCCccccCchh--hccCC Confidence 4555666666666666555432 3555566666666666555543 35555 566666666655544332 45556 Q ss_pred CccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCcc Q FBpp0305286 250 QLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNY 327 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~ 327 (559) +|+.|++++|..... ..+..+++|+.| ++++|.+..++..+. .+++|+.|++ +|.+..++.....++ T Consensus 129 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L--------~l~~n~l~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~~~~ 197 (344) T 4u06_A 129 NLKSLDLSNNQLTTLPNEIEQLKNLKSL--------YLSENQFATFPKEIG---QLQNLKVLFLNNNQITILPNEIAKLK 197 (344) T ss_dssp TCCEEECCSSCCSCCCGGGGGCTTCCEE--------ECCSSCCSSCCGGGG---GCTTCCEEECCSSCCCBCCGGGGGCT T ss_pred CCCEEECCCCcCeeCChhhcCCCCCCEE--------ECcCCcCccCCHHHh---cCCCCCEEECCCCCeecCChhHhcCC Confidence 666666665543322 234455555655 333333333322221 3555555555 444443332234445 Q ss_pred ccceeecCCcccc Q FBpp0305286 328 VYGYKLYNRNQKR 340 (559) Q Consensus 328 ~L~~L~ls~N~i~ 340 (559) .|++|++++|.+. T Consensus 198 ~L~~L~l~~n~l~ 210 (344) T 4u06_A 198 KLQYLYLSDNQLI 210 (344) T ss_dssp TCCEEECCSSCCC T ss_pred CcCEEECcCCccc Confidence 5555555555554No 67>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} SCOP: c.10.2.0 Probab=99.51 E-value=7.3e-14 Score=135.92 Aligned_cols=158 Identities=11% Similarity=0.021 Sum_probs=111.0 Q ss_pred ccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEE Q FBpp0305286 176 VTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNV 254 (559) Q Consensus 176 L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~L 254 (559) .+.|++++|+|+.+|.. -.+.++.|+|++|+|+.++....+..+ +|++|+|++|.+.+..+.. +..+++|+.| T Consensus 13 ~~~l~~s~n~l~~ip~~-----~~~~l~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L 86 (220) T 2v70_A 13 GTTVDCSNQKLNKIPEH-----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEI 86 (220) T ss_dssp TTEEECCSSCCSSCCSC-----CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-TTTCTTCCEE T ss_pred CCEEEeCCCCcCcCCcc-----CCCCCCEEEeCCCccCccCCccccccCCCCCEEECCCCcCCEeChhh-ccCCCCCCEE Confidence 46788888888877653 235678888888888877643356777 7888888888888776655 7778888888 Q ss_pred eCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeec-CCcCcccc Q FBpp0305286 255 HGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSV-PVQLNYVY 329 (559) Q Consensus 255 dl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~~~~L 329 (559) ++++|.+.. ...+..+++|+.| ++++|.++.+.. .+. ++++|+.|++ .|.+.++.. .+..++.| T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L--------~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 155 (220) T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTL--------MLRSNRITCVGNDSFI---GLSSVRLLSLYDNQITTVAPGAFDTLHSL 155 (220) T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEE--------ECTTSCCCCBCTTSST---TCTTCSEEECTTSCCCCBCTTTTTTCTTC T ss_pred ECCCCccCcCCHhhCCCCcCCCEE--------ECCCCccceeCHhHcc---CCCCCCEEECCCCccceECHHHHhcCCCC Confidence 888876543 3446777888888 555555555433 222 5788888888 777776643 24567889 Q ss_pred ceeecCCccccCCChhhhhhh Q FBpp0305286 330 GYKLYNRNQKRQHSSFAQNAK 350 (559) Q Consensus 330 ~~L~ls~N~i~~~~~~~rl~~ 350 (559) ++|++++|++.+.+....+.. T Consensus 156 ~~L~L~~N~~~c~c~l~~l~~ 176 (220) T 2v70_A 156 STLNLLANPFNCNCYLAWLGE 176 (220) T ss_dssp CEEECCSCCEECSGGGHHHHH T ss_pred CEEEecCcCCCCCCchHHHHH Confidence 999999999998877655443No 68>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Probab=99.51 E-value=1.2e-13 Score=148.32 Aligned_cols=184 Identities=16% Similarity=0.085 Sum_probs=108.5 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +.++.+|+.|.+.+|.+.... .....+..+++|++|+|++|+|+.+.+.. ++..+++|+.|+|++|+++.+.. . T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~ 172 (455) T 3v47_A 99 FNGLANLEVLTLTQCNLDGAV----LSGNFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVKSICE-E 172 (455) T ss_dssp TTTCTTCCEEECTTSCCBTHH----HHSSTTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBSCCCT-T T ss_pred ccCcccCCEecCCCCCCCccc----cChhhcCCcccCCEEECCCCccCccCchh-hcccCCccceEeeecCcccccCh-h Confidence 456777888888877765310 01112467888899999988888875432 24778888888888888876542 1 Q ss_pred ccC----------------------------------CC-CccEEEeecCcCCCcchhHHhc------------------ Q FBpp0305286 220 YIN----------------------------------KL-SCKTIFLAGNGLAKLSVDVIRK------------------ 246 (559) Q Consensus 220 ~l~----------------------------------~l-~L~~L~L~~N~l~~~~~~~il~------------------ 246 (559) .+. .+ +|++|+|++|.+.+..+..+.. T Consensus 173 ~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 252 (455) T 3v47_A 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455) T ss_dssp TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT T ss_pred hhhcccccceeeeeccCCcccccchhhccccccccccccceeeEEecCCCcccccchhhhhccccccceeeeeccccccc Confidence 221 22 5777777777665433322111 Q ss_pred --------------------cCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCccc Q FBpp0305286 247 --------------------MLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEE 303 (559) Q Consensus 247 --------------------~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~ 303 (559) ..++|+.|++++|.+. ....+..+++|+.| ++++|.++.... .+. + T Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~Ls~n~l~~~~~~~~~---~ 321 (455) T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL--------TLAQNEINKIDDNAFW---G 321 (455) T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE--------ECTTSCCCEECTTTTT---T T ss_pred ccccchhhhcccccccccccccCCccEEEecCCccceechhhcCCCCCCCEE--------ECCCCcccccCHhHhh---C Confidence 1246666666666443 23456667777777 444444444322 222 4 Q ss_pred ccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 304 RFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 304 l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) +++|+.|++ +|.+..+... +..++.|++|++++|.+. T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455) T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455) T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC T ss_pred cccCCEEECCCCcCCCcCHhHcCCcccCCEEECCCCccC Confidence 666677777 5655554322 345566667777776665No 69>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Probab=99.51 E-value=1.3e-14 Score=149.95 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=45.1 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhc----- Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRK----- 246 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~----- 246 (559) +++|++|+|++|.|+.++.. +..+++|+.|+|++|+|+.++. .+..+ +|++|+|++|.+.+..+.. +. T Consensus 103 l~~L~~L~L~~n~l~~lp~~---l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~~ 176 (328) T 4fcg_A 103 LSHLQHMTIDAAGLMELPDT---MQQFAGLETLTLARNPLRALPA--SIASLNRLRELSIRACPELTELPEP-LASTDAS 176 (328) T ss_dssp GTTCSEEEEESSCCCCCCSC---GGGGTTCSEEEEESCCCCCCCG--GGGGCTTCCEEEEEEETTCCCCCSC-SEEEC-C T ss_pred CCCCCEEECCCCCccccCHh---HhcCCCCCEEEeeCCccCcCCH--HHhcCCCCCEEeCCCCCCccccChh-Hhhcccc Confidence 45555555555555544432 2445555555555555554442 34444 5555555554444433222 21 Q ss_pred ----cCCCccEEeCCCCcCCC-chhccCCCCcccc Q FBpp0305286 247 ----MLPQLKNVHGCVQLGES-TEAVDNIPKSQQL 276 (559) Q Consensus 247 ----~lp~L~~Ldl~~N~~~~-~~~~~~lp~Lk~L 276 (559) .+++|+.|++++|.+.. +..+..+++|+.| T Consensus 177 ~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 211 (328) T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211 (328) T ss_dssp CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE T ss_pred hhhccCCCCCEEECCCCCCeecchhhcCCCCCCEE Confidence 45555555555543322 1234444555555No 70>4r5d_A Leucine rich repeat protein; leucine rich repeat (LRR) protein, de novo protein; 2.53A {Synthetic construct} Probab=99.51 E-value=1.3e-13 Score=147.02 Aligned_cols=178 Identities=19% Similarity=0.136 Sum_probs=116.5 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++++.|.+.+|.+..+ +. +..+++|++|+|++|+++.++.. .+.++++|+.|+|++|+++.++. ..+ T Consensus 61 ~~~~L~~L~l~~~~l~~~---~~-----~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~ 129 (441) T 4r5d_A 61 YLPNVRYLALGGNKLHDI---SA-----LKELTNLGWLNLSNNQLETLPQG--VFEKLTNLTTLNLSNNQLTSLPQ-GVF 129 (441) T ss_dssp GCTTCCEEECTTSCCSCC---GG-----GTTCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTT T ss_pred cchhcCEEeccCCcccCc---hh-----hcCCCCCCEEECCCCccCccCHh--HhcCCCCCcEEEcCCCcCCcCCH-HHh Confidence 356666777766665532 11 35777888888888887776653 24677888888888888777663 346 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) .++ +|++|++++|.+.+.++.. +..+++|+.|++++|.... ...+..+++|+.| ++.+|.+..++... T Consensus 130 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~~~ 200 (441) T 4r5d_A 130 ERLASLTTLNLSNNQLTSLPQGV-FERLTNLTTLNLSNNQLTSLPQGVFERLTNLTTL--------NLSNNQLTSLPQGV 200 (441) T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCCCCTTS T ss_pred hcCCCCcEEECCCCccCCCCcch-hhcCCCCCEEECCCCccccCCHHHHhhccCCCee--------eCCCCccCcccHhH Confidence 677 7888888888777766554 6777888888888775432 2335677778888 44444444444322 Q ss_pred cCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) .. .+++|+.|++ .|.+..++.. ...++.|++|++++|.+.. T Consensus 201 ~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 243 (441) T 4r5d_A 201 FE--RLTSLTTLNLSNNQLTSLPDGVFERLTNLKTLNLSNNQLTK 243 (441) T ss_dssp ST--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS T ss_pred Hh--cCCCCCEEECcCCcCCcchHHHHhcccCccEEEccCCCCCc Confidence 22 5777888888 6666554433 3556777888888877653No 71>4u06_A LIC10831; unknown function, LRR protein, pathogen, virulence factor; HET: MSE; 1.90A {Leptospira interrogans serovar copenhafiocruz l1-130} Probab=99.51 E-value=9.4e-14 Score=143.49 Aligned_cols=176 Identities=16% Similarity=0.151 Sum_probs=109.3 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) ..+.+|+.|.+.+|.+..+ +. .+..+++|+.|++++|.+..++.. +..+++|+.|++++|.++.++. . T Consensus 125 ~~l~~L~~L~l~~n~l~~l---~~----~~~~~~~L~~L~l~~n~l~~~~~~---l~~l~~L~~L~l~~n~l~~~~~--~ 192 (344) T 4u06_A 125 EQLQNLKSLDLSNNQLTTL---PN----EIEQLKNLKSLYLSENQFATFPKE---IGQLQNLKVLFLNNNQITILPN--E 192 (344) T ss_dssp GGCTTCCEEECCSSCCSCC---CG----GGGGCTTCCEEECCSSCCSSCCGG---GGGCTTCCEEECCSSCCCBCCG--G T ss_pred ccCCCCCEEECCCCcCeeC---Ch----hhcCCCCCCEEECcCCcCccCCHH---HhcCCCCCEEECCCCCeecCCh--h Confidence 3456666777766665532 11 225677777788877777766543 3667777777777777776653 4 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC-chhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES-TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~-~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) +..+ +|++|++++|.+...+.. +..+++|+.|++++|.... +..+..+++|+.| ++++|.+..++..+ T Consensus 193 ~~~~~~L~~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L--------~l~~n~l~~l~~~~ 262 (344) T 4u06_A 193 IAKLKKLQYLYLSDNQLITLPKE--IEQLKNLQTLDLSYNQLMILPKEVGQLENLQTL--------DLRNNQLKTLPKEI 262 (344) T ss_dssp GGGCTTCCEEECCSSCCCBCCGG--GGGCTTCCEEECCSSCCSCCCGGGGGCTTCCEE--------ECCSSCCCCCCGGG T ss_pred HhcCCCcCEEECcCCccccCChH--HhCCCCCCEEECCCCccccCchhhcCCCccCEE--------ECCCCccccCCHhH Confidence 6666 777777777777755432 6677777777777775433 2345667777777 33334343333333 Q ss_pred cCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) . .+++|+.|++ +|.+..++.....++.|++|++++|.++. T Consensus 263 ~---~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~ 303 (344) T 4u06_A 263 E---QLKNLQTLFLSNNQLTILPQEIGKLKNLLWLSLVYNQLTT 303 (344) T ss_dssp G---GCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC T ss_pred h---cCCCCCEEECCCCcCccCChHHhcCCCCCEEECCCCcCCc Confidence 2 4666777777 56555554444556666777777776653No 72>3wo9_A Variable lymphocyte receptor C; leucine rich repeat, immunological receptor, membrane, immun; 2.30A {Lethenteron camtschaticum} SCOP: c.10.2.0 PDB: 4po4_A Probab=99.51 E-value=1.6e-13 Score=136.19 Aligned_cols=155 Identities=17% Similarity=0.058 Sum_probs=117.7 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) .+.|+.|++++|+|+.++.. ..++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+.+..... +..+++| T Consensus 44 ~~~l~~l~ls~n~l~~ip~~-----~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L 116 (248) T 3wo9_A 44 DSSPETVDCSSKKLTAVPTG-----IPANTEKLQLDFNQLANIPA-EAFHGLTRLTYLALDYNQLQSLPVGV-FDQLNNL 116 (248) T ss_dssp TTBCSEEECTTSCCSSCCSC-----CCTTCSEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTC T ss_pred CCCCCEEEcCCCCCCcCCCC-----cCCCCCEEEeCCCCCCEECH-HHcCCccCCCEEECCCCcCCeeChhh-ccCCCCC Confidence 45688899999998887753 34788899999999888773 467888 8999999999888877665 7888899 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCcc Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNY 327 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~ 327 (559) +.|++++|.+.. ...+..+++|+.| ++++|.++.++..... .+++|+.|++ .|.+..++.. +..++ T Consensus 117 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L--------~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~ 186 (248) T 3wo9_A 117 NELRLQDNQLTSLPPGVFDSLTKLTYL--------TLSQNQLQSIPAGVFD--KLTNLNRLELSTNQLQSVPHGAFDSLV 186 (248) T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCSCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCT T ss_pred CEEECCCCcCcccCHhHhcccccCCEE--------ECCCCcCCeeCHhHhC--CCCCCCEEECCCCCCCccCHHHhccCC Confidence 999998886543 3446788888888 5555555555443222 5788999999 7777776543 45678 Q ss_pred ccceeecCCccccCCCh Q FBpp0305286 328 VYGYKLYNRNQKRQHSS 344 (559) Q Consensus 328 ~L~~L~ls~N~i~~~~~ 344 (559) .|++|++++|++.+... T Consensus 187 ~L~~L~l~~N~~~~~~~ 203 (248) T 3wo9_A 187 NLETLHLELNPWDCACS 203 (248) T ss_dssp TCCEEECCSCCBCTTST T ss_pred CCCEEECCCCCCCCCCc Confidence 99999999999998664No 73>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Probab=99.51 E-value=5.4e-14 Score=144.31 Aligned_cols=176 Identities=14% Similarity=0.029 Sum_probs=96.6 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +.++.+|+.|.+.+|.+... ....+.++++|++|+|++|+++.++.. ..++|+.|++++|+++.++. . T Consensus 72 ~~~l~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~-~ 139 (330) T 1xku_A 72 FKNLKNLHTLILINNKISKI------SPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQELRVHENEITKVRK-S 139 (330) T ss_dssp TTTCTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCCEEECCSSCCCBBCH-H T ss_pred hhCCCCCCEEECCCCccCcc------CHHHhcCCCCCCEEECCCCccccCChh-----hcccccEEECCCCcCcccCH-h Confidence 44556666666666655421 111235666677777777766665543 12666666666666666542 2 Q ss_pred ccCCC-CccEEEeecCcCCC--cchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhc- Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAK--LSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY- 295 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~--~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~- 295 (559) .+.++ +|++|++++|.+.. ..... +..+++|+.|++++|........ ..++|+.| ++++|.+.... T Consensus 140 ~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L--------~l~~n~l~~~~~ 209 (330) T 1xku_A 140 VFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTIPQG-LPPSLTEL--------HLDGNKITKVDA 209 (330) T ss_dssp HHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSCCSS-CCTTCSEE--------ECTTSCCCEECT T ss_pred HhCCCCcccEEECCCCcCcccccCHHH-hcCCCCCCEeECCCCCCCccCcc-ccCcCcEE--------ECCCCCCCcCCH Confidence 45566 66666666666653 22322 56666666666666644322211 12566666 33444443332 Q ss_pred ccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) ..+. .+++|+.|++ .|.+...... ...++.|++|++++|.+. T Consensus 210 ~~l~---~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 253 (330) T 1xku_A 210 ASLK---GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330) T ss_dssp GGGT---TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS T ss_pred HHhc---CCCCcCEEECCCCcCCccCHhHccCCCCcCEEECCCCccc Confidence 1222 4666777777 5555555432 244566777777777665No 74>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} SCOP: c.10.2.0 PDB: 3g04_C* Probab=99.51 E-value=1.2e-14 Score=142.90 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=134.9 Q ss_pred CCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCCC-CCCCCCccCccC Q FBpp0305286 145 ASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISAN-RIQDLGELNYIN 222 (559) Q Consensus 145 ~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N-~L~~l~~l~~l~ 222 (559) +++.|.+.+|.+..+ ....+.++++|++|+|++| +|+.++.. .+.++++|+.|+|++| +|+.++. ..|. T Consensus 32 ~l~~L~l~~n~i~~i------~~~~f~~l~~L~~L~L~~N~~l~~i~~~--~f~~l~~L~~L~L~~N~~l~~i~~-~~f~ 102 (239) T 2xwt_C 32 STQTLKLIETHLRTI------PSHAFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDP-DALK 102 (239) T ss_dssp TCCEEEEESCCCSEE------CTTTTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECT-TSEE T ss_pred CceEEEecCCcCCcc------CHhHhcCCCCeeEEEeeCCCCcceeCHh--HccCCCCceEEEecCCCCccEECH-HHcC Confidence 567777777777643 2224578899999999999 99988765 3578999999999999 9998874 4688 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCC-cCC--CchhccCCCC-cccccCCCCCCccchhhhhhhhccc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQ-LGE--STEAVDNIPK-SQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N-~~~--~~~~~~~lp~-Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) ++ +|++|+|++|.+..++.-..+..+..|+.|+++.| .+. +...+..+++ |+.| ++++|.++.++.. T Consensus 103 ~l~~L~~L~L~~N~l~~~p~l~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~~L~~L--------~L~~N~l~~i~~~ 174 (239) T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL--------KLYNNGFTSVQGY 174 (239) T ss_dssp CCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE--------ECCSCCCCEECTT T ss_pred CCCCCCEEECCCCccccccCcccccccccceEEEecCCCCccccCHHHhccccccCcEE--------EecCCCCceECcc Confidence 88 99999999999988764222667777888999998 443 3446778888 9999 5666666666553 Q ss_pred ccCcccccccccccc-ccc-eeeeecC-CcCc-cccceeecCCccccCC Q FBpp0305286 298 FDDTEERFKLKKYYD-DQA-MFSLSVP-VQLN-YVYGYKLYNRNQKRQH 342 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~-l~sl~~~-~~~~-~~L~~L~ls~N~i~~~ 342 (559) ... . ++|+.|++ +|. +..++.. +..+ +.|++|++++|.++.. T Consensus 175 ~~~--~-~~L~~L~L~~N~~l~~i~~~~f~~l~~~L~~L~ls~N~l~~l 220 (239) T 2xwt_C 175 AFN--G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239) T ss_dssp TTT--T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC T ss_pred ccC--C-CCcCEEECCCCCCcCeeCHHHhcCcccCCCEEeccCCcCccc Confidence 332 4 88999999 775 8877654 3556 8899999999998753No 75>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Probab=99.50 E-value=3.7e-14 Score=157.84 Aligned_cols=194 Identities=11% Similarity=-0.032 Sum_probs=103.4 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) ..+++|+.|.+.+|.+......+. .+..+++|++|+|++|+++.++.. +..+++|+.|+|++|+++.++.... T Consensus 347 ~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606) T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSY----SDLGTNSLRHLDLSFNGAIIMSAN---FMGLEELQHLDFQHSTLKRVTEFSA 419 (606) T ss_dssp CCCTTCCEEECCSSCEEEEEECCH----HHHCCSCCCEEECCSCSEEEECCC---CTTCTTCCEEECTTSEEESTTTTTT T ss_pred ccCCCCCEEECcCCcCCCcccccc----cccccCcCCEEECCCCchhhhhHh---hcCCcccCEEeCCCCccccccChhh Confidence 345667777777776653321122 225667777777777777665532 3566667777777776665543334 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC---CchhccCCCCcccccCCCCCCc------------ Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE---STEAVDNIPKSQQLQGGGTNGL------------ 284 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~---~~~~~~~lp~Lk~L~l~~~~l~------------ 284 (559) +..+ +|++|++++|.+.+..+.. +..+++|+.|++++|... .+..+..+++|+.|++++|.+. T Consensus 420 ~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606) T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606) T ss_dssp TTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT T ss_pred hhccccCCEEECCCCcCCccCHhh-hhccccCCEEECCCCcCCccchHhHhccCCCCCEEECCCCCCCccChhhcccccc Confidence 5556 6666666666665554443 555556666666555332 1233445555555533333221 Q ss_pred ----cchhhhhhhhc-ccccCcccccccccccc-ccceeeeecCCcCcc-ccceeecCCccccCCChh Q FBpp0305286 285 ----KFCQDFISSYY-TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNY-VYGYKLYNRNQKRQHSSF 345 (559) Q Consensus 285 ----~L~~n~L~~~~-~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~-~L~~L~ls~N~i~~~~~~ 345 (559) ++++|.++... ..+. ++++|+.|++ +|.+.+++.....++ .|++|++++|++.|.+.. T Consensus 499 L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~ls~N~l~~ip~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606) T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYN---QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606) T ss_dssp CCEEECCSSCCSCEEGGGTT---TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT T ss_pred CCEEECCCCCcCccCHHHhc---CccCCCEEECCCCcccccchhhhhhcccccEEEeeCCCCcccCCc Confidence 33333333332 2222 3556666666 555555444433332 466666666666655443No 76>4u08_A LIC11098; LRR protein, pathogen, virulence factor, unknown function; 1.95A {Leptospira interrogans serogroupicterohaemorrhagiae serovar copenhageni} Probab=99.50 E-value=1.1e-13 Score=145.88 Aligned_cols=175 Identities=16% Similarity=0.170 Sum_probs=112.5 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++|+.|.+.+|.+..+ +. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++. .+ T Consensus 156 ~l~~L~~L~l~~n~~~~~---~~----~l~~~~~L~~L~l~~n~l~~~~~~---~~~~~~L~~L~l~~n~l~~~~~--~~ 223 (398) T 4u08_A 156 QLQNLESLGLDHNQLNVL---PK----EIGQLRNLESLGLDHNQLNVLPKE---IGQLQNLQILHLRNNQLTTLPK--EI 223 (398) T ss_dssp GCTTCCEEECCSSCCSCC---CG----GGGGCTTCCEEECTTSCCCCCCGG---GGGCTTCCEEECCSSCCSCCCG--GG T ss_pred cCCCCCEEECCCCcCccC---Ch----hHhCCCCCCEEECcCCcCCcCChh---HhcCCCCCEEECCCCccCcCCh--hH Confidence 456667777766665422 11 235677888888888888776543 4677788888888888877764 56 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) ..+ +|++|++++|.+...+.. +..+++|+.|++++|..... ..+..+++|+.| ++++|.+..++..+. T Consensus 224 ~~~~~L~~L~l~~n~l~~l~~~--~~~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L--------~l~~n~l~~~~~~~~ 293 (398) T 4u08_A 224 GQLQNLQKLLLNKNKLTTLPKE--IGQLQNLQKLKLYENQLTTLPKEIGQLQNLQEL--------DLDGNQLTTLPENIG 293 (398) T ss_dssp GGCTTCCEEECCSSCCCCCCGG--GGGCTTCCEEECCSCCCCCCCGGGGGCTTCCEE--------ECTTCCCSCCCGGGG T ss_pred hhCCCCCEEECCCCccccCChH--HhCCCCCCEEECcCCcCccCChHHhCccCCCEE--------ECcCCcCCcCChhhh Confidence 666 788888888877765443 67777888888877755432 345667777777 444444444433332 Q ss_pred Ccccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) .+++|+.|++ +|.+..++.....++.|++|++++|.++. T Consensus 294 ---~~~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~ 333 (398) T 4u08_A 294 ---QLQRLQTLYLGNNQLNFLPKEIGQLRNLESLDLEHNQLNA 333 (398) T ss_dssp ---GCTTCCEEECTTCCCSCCCGGGGGCTTCCEEECTTSCCSC T ss_pred ---cCcCcCEEECCCCccccCCHHHhCCCCCCEEECCCCcCcC Confidence 4666777777 55555544444555667777777776653No 77>4r6g_A Leucine rich repeats DLRR_K; leucine rich motifs, de novo protein; 2.80A {Synthetic construct} Probab=99.50 E-value=4.8e-14 Score=151.45 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=90.4 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) +.+++++.|.+.+|.+... . .+..+++|++|+|++|+++.++.. .+.++++|+.|+|++|+++.++. .. T Consensus 59 ~~l~~L~~L~l~~~~~~~~----~----~l~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~ 127 (464) T 4r6g_A 59 QYLPNVRYLALGGNKLHDI----S----ALKELTNLGWLNLSNNQLETLPQG--VFEKLTNLTTLNLSNNQLTSLPQ-GV 127 (464) T ss_dssp GGCTTCCEEECTTSCCCCC----G----GGTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCT-TT T ss_pred cCCCceeEEEecCCccCCC----h----hhhcCCCCCEEECCCCccCccCHh--HhcCCCCCCEEECCCCcCCcCCh-hH Confidence 3455555555555554421 1 124566666666666666665543 23556666666666666665552 24 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc----------hhccCCCCcccccCCCCCCccchhh Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST----------EAVDNIPKSQQLQGGGTNGLKFCQD 289 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~----------~~~~~lp~Lk~L~l~~~~l~~L~~n 289 (559) +.++ +|++|++++|.+.+..... +..+++|+.|++++|..... ..+..+++|+.| ++.+| T Consensus 128 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L--------~l~~n 198 (464) T 4r6g_A 128 FERLASLTTLNLSNNNLANLNDRV-FEGLTNLTTLNLSNNNLARLWKHANPGGPIYFLKGLTNLTTL--------NLSNN 198 (464) T ss_dssp TTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCGGGGCTTSTTSCCCTTTTCTTCCEE--------ECCSS T ss_pred hcCCCcCCEEECcCCcCCeeCHhH-hccCCCCCEEECCCCcchhhhhccCCCcchhhhcCCCCCCEE--------ECCCC Confidence 5555 6666666666666555443 55666666666666533210 123455566666 33333 Q ss_pred hhhhhcccccCcccccccccccc-ccceeeeecCC-cCccccceeecCCcccc Q FBpp0305286 290 FISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV-QLNYVYGYKLYNRNQKR 340 (559) Q Consensus 290 ~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~-~~~~~L~~L~ls~N~i~ 340 (559) .+..++..... ++++|+.|++ +|.+..++... ..++.|+.|++++|.+. T Consensus 199 ~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 249 (464) T 4r6g_A 199 GFDELPKEVFK--DLTSLTTLNLSNNQLTSLPQGVFERLTNLTTLNLSNNQLT 249 (464) T ss_dssp CCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTSSTTCTTCCEEECCSSCCC T ss_pred cCCcCCHHHhC--CCCCCCEEECCCCccCcCCHHHHhcCcCCcEEECCCCCcC Confidence 33333221111 3555555555 44444433221 34455555555555554No 78>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 4j4l_A 3rfj_A Probab=99.50 E-value=7.6e-14 Score=139.69 Aligned_cols=173 Identities=21% Similarity=0.153 Sum_probs=134.3 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) ++.+.+|+.|.+.+|.+..+. .+..+++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++.++. . T Consensus 59 l~~~~~L~~L~l~~n~l~~~~--------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 127 (272) T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS--------ALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELVLVENQLQSLPD-G 127 (272) T ss_dssp GGGCTTCCEEECTTSCCCCCG--------GGTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCT-T T ss_pred cccCCCCCEEECCCCccCcch--------hhcCCCCCCEEECCCCccCccChh--HhcCCCCCCEEECCCCcCCccCH-H Confidence 556788888888888876532 347899999999999999988764 34789999999999999998873 4 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT 296 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~ 296 (559) .+..+ +|++|+|++|.+....... +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.++.++. T Consensus 128 ~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~ 198 (272) T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL--------RLYQNQLKSVPD 198 (272) T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCSCCCT T ss_pred HhccCCCCCEEECCCCccCccCHHH-hcCcccCCEEECCCCcCCccCHHHhhCCccCCEE--------ECCCCcCCccCH Confidence 67888 9999999999999887765 7899999999999996653 3346789999999 555555555544 Q ss_pred cccCcccccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 297 FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 297 ~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) .... .+++|+.|++ +|.+. ..++.+++|+++.|.+. T Consensus 199 ~~l~--~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~~~~~ 235 (272) T 3rfs_A 199 GVFD--RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHS 235 (272) T ss_dssp TTTT--TCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTG T ss_pred HHHh--CCCCCCEEEccCCCCc------CcchhhHHHHHHHhhCC Confidence 3222 6899999999 55443 23456777877777654No 79>4r5d_A Leucine rich repeat protein; leucine rich repeat (LRR) protein, de novo protein; 2.53A {Synthetic construct} Probab=99.50 E-value=1.6e-13 Score=146.39 Aligned_cols=181 Identities=18% Similarity=0.190 Sum_probs=143.6 Q ss_pred cccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCC Q FBpp0305286 137 TLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLG 216 (559) Q Consensus 137 ~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~ 216 (559) ......+.+++.|.+.++.+..+.. + ..+++|++|+|++|+++.++.+ ..+++|+.|+|++|+++.++ T Consensus 34 ~~~~~~~~~L~~L~l~~~~~~~~~~-------~-~~~~~L~~L~l~~~~l~~~~~~----~~l~~L~~L~l~~n~l~~~~ 101 (441) T 4r5d_A 34 AVTQNELNSIDQIIANNSDIKSVQG-------I-QYLPNVRYLALGGNKLHDISAL----KELTNLGWLNLSNNQLETLP 101 (441) T ss_dssp EECHHHHHTCCEEECTTSCCSCCTT-------G-GGCTTCCEEECTTSCCSCCGGG----TTCTTCSEEECCSSCCCCCC T ss_pred ccchhhhcchhheecCCCCceeccc-------c-ccchhcCEEeccCCcccCchhh----cCCCCCCEEECCCCccCccC Confidence 3444568888899998887764321 1 3489999999999999988764 78999999999999999887 Q ss_pred ccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhh Q FBpp0305286 217 ELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISS 293 (559) Q Consensus 217 ~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~ 293 (559) . ..+.++ +|++|++++|.+...+... +..+++|++|++++|.+.. ...+..+++|+.| ++++|.+.. T Consensus 102 ~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~ 171 (441) T 4r5d_A 102 Q-GVFEKLTNLTTLNLSNNQLTSLPQGV-FERLASLTTLNLSNNQLTSLPQGVFERLTNLTTL--------NLSNNQLTS 171 (441) T ss_dssp T-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCC T ss_pred H-hHhcCCCCCcEEEcCCCcCCcCCHHH-hhcCCCCcEEECCCCccCCCCcchhhcCCCCCEE--------ECCCCcccc Confidence 4 467889 9999999999999888765 8899999999999996543 3457889999999 555555555 Q ss_pred hcccccCcccccccccccc-ccceeeeecCC-cCccccceeecCCccccC Q FBpp0305286 294 YYTFFDDTEERFKLKKYYD-DQAMFSLSVPV-QLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 294 ~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~-~~~~~L~~L~ls~N~i~~ 341 (559) ++..... .+++|+.|++ .|.+..++... ..++.|++|++++|.+.. T Consensus 172 ~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 219 (441) T 4r5d_A 172 LPQGVFE--RLTNLTTLNLSNNQLTSLPQGVFERLTSLTTLNLSNNQLTS 219 (441) T ss_dssp CCTTTTT--TCTTCCEEECCSSCCCCCCTTSSTTCTTCCEEECCSSCCCC T ss_pred CCHHHHh--hccCCCeeeCCCCccCcccHhHHhcCCCCCEEECcCCcCCc Confidence 5443222 6899999999 77777665443 678999999999998875No 80>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A 4wyk_B Probab=99.50 E-value=2.2e-14 Score=130.27 Aligned_cols=115 Identities=22% Similarity=0.361 Sum_probs=97.7 Q ss_pred cchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhhc Q FBpp0305286 285 KFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSR 364 (559) Q Consensus 285 ~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~~ 364 (559) .+...|+++||..++. ++..|..+|.+++.+++. + ....|..+|...|.+ T Consensus 15 ~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~S~~s~~---------------g-------------~~~~G~~~I~~~l~~ 64 (140) T 1jkg_A 15 RAAEEFVNVYYTTMDK--RRRLLSRLYMGTATLVWN---------------G-------------NAVSGQESLSEFFEM 64 (140) T ss_dssp HHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEET---------------T-------------EEEESHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHhccCCcEEEEC---------------C-------------eEeccHHHHHHHHHh Confidence 5778899999999997 899999999988887752 0 346789999999999 Q ss_pred CCCCCcCCCceeeeeEeecC------CEEEEEEcCceEEcCCCCCCCcceeeeEEEEecC---CCcEEEEccceEEeeC Q FBpp0305286 365 LPLMHTDLENVGLDIQVFTS------SLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSN---SPGWLITNDMLCITST 434 (559) Q Consensus 365 LP~t~h~lssl~vD~~~~~~------~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~---n~~~~I~ND~l~i~~~ 434 (559) ||.++|+++++ ||++..+ ..++|+|+|.|++.+. ..|+|+|+|+|+|++ +++|+|.||+|+++++ T Consensus 65 Lp~t~h~i~s~--d~q~~~~~~~~~~~~ili~V~G~~~~~~~---~~~~F~qtFvL~p~~~~~~~~~~I~nD~fr~~~~ 138 (140) T 1jkg_A 65 LPSSEFQISVV--DCQPVHDEATPSQTTVLVVICGSVKFEGN---KQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140) T ss_dssp SCCEEEEEEEE--EEEECCTTTSTTCCEEEEEEEEEEEETTS---CCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT T ss_pred CCCeEEEEEEE--eEEEcCCcccCCCCeEEEEEEEEEEECCC---CcceeeEEEEEeecCCCCCCeEEEEeeEEEeecc Confidence 99999998865 7777654 5899999999998654 689999999999974 3579999999999876No 81>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Probab=99.49 E-value=3.1e-14 Score=157.05 Aligned_cols=187 Identities=12% Similarity=0.003 Sum_probs=141.1 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+.+|+.|.+.+|.+......+. .+..+++|++|+|++|+++.++.. +..+++|+.|+|++|+++.++... T Consensus 343 ~~~l~~L~~L~ls~n~l~~~~~~~~----~~~~~~~L~~L~ls~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570) T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQ----SDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFS 415 (570) T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEH----HHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSC T ss_pred hccCCcCCEEECCCCCCccccccch----hhccCCCCCEEECCCCccccCchh---hhcCCCCCEEEccCCccccccchh Confidence 3356777777887777664322222 225788999999999998887632 478899999999999998876545 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC---CchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE---STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~---~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) .+..+ +|++|++++|.+.+..+.. +..+++|+.|++++|... .+..+..+++|+.| ++++|.+.... T Consensus 416 ~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L--------~Ls~n~l~~~~ 486 (570) T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL--------DLSQCQLEQLS 486 (570) T ss_dssp TTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE--------ECTTSCCCEEC T ss_pred hhccCCCCCEEeCcCCccCccCHhH-hhCCccCcEEECCCCccccccchhhhccccCCCEE--------ECCCCccCccC Confidence 67888 9999999999998877765 888999999999998654 24567788999999 66666666553 Q ss_pred c-cccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCChh Q FBpp0305286 296 T-FFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSF 345 (559) Q Consensus 296 ~-~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~ 345 (559) . .+. ++++|+.|++ +|.+..++.. +..++.|+.|++++|++.+.+.. T Consensus 487 ~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 536 (570) T 2z63_A 487 PTAFN---SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570) T ss_dssp TTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT T ss_pred HHHHh---ccccCCEEeCCCCCcccCCHHHHhcCcCCCEEEccCCCccccCcC Confidence 3 333 6889999999 7777766443 35678999999999999886654No 82>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Probab=99.49 E-value=6.6e-14 Score=152.38 Aligned_cols=201 Identities=10% Similarity=0.037 Sum_probs=149.4 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+++|+.|.+.+|.+... ...++|++|++++|.++.++. ..+++|+.|+|++|.++.+.. . T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~-----------~~~~~L~~L~l~~n~l~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~ 138 (487) T 3oja_A 76 LESLSTLRTLDLNNNYVQEL-----------LVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRD-L 138 (487) T ss_dssp CTTCTTCCEEECCSSEEEEE-----------EECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGG-B T ss_pred cccCCCCCEEEccCCcCCCc-----------CCCCCcCEEECCCCCCCCCCc-----cccCCCCEEECCCCCCCCCcc-h Confidence 55677777777777765532 122788888888888877654 367889999999999997763 3 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) .+.++ +|++|+|++|.+.+..+..+...+++|+.|++++|.+........+++|+.| ++++|.+..++..+ T Consensus 139 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L--------~Ls~n~l~~l~~~~ 210 (487) T 3oja_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL--------DLSSNKLAFMGPEF 210 (487) T ss_dssp CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE--------ECCSSCCCEECGGG T ss_pred hhccCCCCCEEECCCCccCCcCHHHHhhhCCCCCEEECCCCccCCcCCcccCCCCCEE--------ECCCCCCCCcChhh Confidence 67788 9999999999999877766455899999999999976655445568899999 55666666655544 Q ss_pred cCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC---CChhhhhhhhhhhhHHHHHHhhcCCCC Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ---HSSFAQNAKLQVGRAALLLALSRLPLM 368 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~---~~~~~rl~~L~~g~~~i~~~L~~LP~t 368 (559) . .+++|+.|++ +|.+..++.....++.|++|++++|.+.+ +..+..+..|.......+..+...+.. T Consensus 211 ~---~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 281 (487) T 3oja_A 211 Q---SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (487) T ss_dssp G---GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSC T ss_pred c---CCCCcCeeEcCCCCCCChhHHHhcCCCCCEEEeCCCCCCCccHHHHHHhCCCccEEeccccccccCCCcc Confidence 3 6899999999 88888877666778999999999999973 233444555555555556666655543No 83>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 Probab=99.49 E-value=1.7e-14 Score=129.15 Aligned_cols=114 Identities=23% Similarity=0.382 Sum_probs=99.3 Q ss_pred ccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhh Q FBpp0305286 284 LKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALS 363 (559) Q Consensus 284 ~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~ 363 (559) ..+...|+++|+..++. ++..|..+|.+++.+++.. ....|..+|...|. T Consensus 12 ~~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~s~~s~~~----------------------------~~~~G~~~I~~~l~ 61 (129) T 1zo2_A 12 DQIGKQFVQHYYQTFQT--NRPALGGLYGPQSMLTWED----------------------------TQFQGQANIVNKFN 61 (129) T ss_dssp HHHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEETT----------------------------EEEESHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHHhhCCCcEEEECC----------------------------cEecCHHHHHHHHH Confidence 46788999999999996 8999999999888887631 24578899999999 Q ss_pred cCC--CCCcCCCceeeeeEeecCCEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCCCcEEEEccceEEe Q FBpp0305286 364 RLP--LMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNSPGWLITNDMLCIT 432 (559) Q Consensus 364 ~LP--~t~h~lssl~vD~~~~~~~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~ 432 (559) ++| .++|++++ +|+++..++.++|+|+|.|++.++ ..|+|+|+|+|+|.++++|+|.||++++. T Consensus 62 ~lpf~~~~h~i~s--~D~q~~~~~~i~i~V~G~~~~~~~---~~~~F~qtFvL~p~~~~~~~I~nD~fr~~ 127 (129) T 1zo2_A 62 SLNFQRVQFEITR--VDCQPSPNNGSIVFVTGDVRIDDG---QPLKFSQVFNLMPSGNGGFMIFNDLFRLN 127 (129) T ss_dssp HHCCSCEEEEEEE--EEEEECTBSSEEEEEEEEEEETTC---CCEEEEEEEEEEECSSSCEEEEEEEEEEC T ss_pred hCCCcceEEEEEE--EeeEEeCCCCEEEEEEEEEEECCC---CCceEEEEEEEEECCCCCEEEEEEEEEEe Confidence 999 88999875 599999888899999999999764 78999999999999867899999999874No 84>4xa9_A GAla protein type 1, 3 or 4; structural genomics, infection, effector, papain-like cystei protease family, leucine-rich-repeat, complex; 2.00A {Legionella pneumophila subsp} Probab=99.49 E-value=8.7e-15 Score=148.20 Aligned_cols=208 Identities=16% Similarity=0.033 Sum_probs=95.8 Q ss_pred ccccccCchhHHhHHHHHhcccccccccccCC-------------CCCCCccccccccCCcchhhhHHHHHHhhccCCCc Q FBpp0305286 110 MMCAQITDEFTTAIQEALRSRYEVDSRTLDLS-------------RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHV 176 (559) Q Consensus 110 ~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs-------------~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L 176 (559) .+.++++.+.+..+...+.. . ...+.++++ .+.+|+.|.+.+|.+.. .....+..+++| T Consensus 22 L~~L~L~~~~i~~~~~~l~~-~-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~------~~~~~l~~~~~L 93 (297) T 4xa9_A 22 LSFLNLRDNDIPLLCEFLQN-H-PAITSLDLSHNDITANGVKLFVNKTSVSSLNISHNNIGP------EGAQWLSEDNHI 93 (297) T ss_dssp CTTSCCCGGGHHHHHHHHHH-C-TTCCEEECCSSCCCHHHHHHHTTSSCCCEEECCSSCCHH------HHHHHHTTCSSC T ss_pred eEEEEcCCCCchHHHHHHhc-C-CCccEEECcCCCCChHHHHHHhcCCCCcEEECcCCCCCH------HHHHHHhCCCcc Confidence 34577888888777333321 1 333444443 23444444444444331 111222445555 Q ss_pred cEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCcchhHHhccCCCccEEeC Q FBpp0305286 177 TSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHG 256 (559) Q Consensus 177 ~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl 256 (559) ++|+|++|+++..... .+..+++|+.|+|++|+++..+. ..+..++|++|+|++|.+....+.. +..+++|+.|++ T Consensus 94 ~~L~ls~n~l~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l 169 (297) T 4xa9_A 94 TTLDVSFNEIGDEGVK--ALAANAKLITLYALYNKITKVGA-GYLAQSNLKKIDLCFNSLEDEGVIA-LASNINIKELIA 169 (297) T ss_dssp CEEECCSSCCHHHHHH--HHHHCTTCSEEECCSSCCCHHHH-HHHTTSCCSEEECTTCCCHHHHHHH-HHTCTTCSEEEC T ss_pred CEEEeeCCCCCHHHHH--HHhcCCCCCEEECcCCCCCHHHH-HHHHhCCccEEEeeCCCCCcHHHHH-HhcCCCCCEEEC Confidence 5555555555443211 12445555555555555554331 1223235555555555555443333 455555555555 Q ss_pred CCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecC-CcCccccce Q FBpp0305286 257 CVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGY 331 (559) Q Consensus 257 ~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~ 331 (559) ++|.+.. ...+..+++|+.|++ ++|.+..... .+. .+++|+.|++ +|.+...... ...++.|++ T Consensus 170 ~~n~l~~~~~~~l~~~~~L~~L~L--------~~n~l~~~~~~~l~---~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 238 (297) T 4xa9_A 170 SACDVSDIGAIELAKNNQLTLLIL--------GKNAITDKSTLHFA---NNTSLSTLHLGSNQITAAGKKILETNTRITD 238 (297) T ss_dssp CSSCCBHHHHHHHHHCSSCSEEEC--------CSSBCCGGGHHHHH---SCSSCSEEECCSSSCCHHHHHHHTTCTTCSE T ss_pred cCCCCChHHHHHHhcCCCcCEEEC--------cCCcCChHHHHHHh---cCCCcCEEeCcCCCCChHHHHHHHhCCCCCE Confidence 5554432 123444555555533 2232322211 111 3455666666 4444433221 234455666 Q ss_pred eecCCcccc Q FBpp0305286 332 KLYNRNQKR 340 (559) Q Consensus 332 L~ls~N~i~ 340 (559) |++++|.+. T Consensus 239 L~l~~N~l~ 247 (297) T 4xa9_A 239 LDLIGNPIE 247 (297) T ss_dssp EECTTSCCC T ss_pred EECcCCCCC Confidence 666666555No 85>4r58_A Leucine rich repeat protein; leucine rich repeat (LRR) protein, de novo protein; 2.40A {Synthetic construct} Probab=99.49 E-value=1.3e-13 Score=133.57 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=124.5 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|+.|++++|.+..++.+ ..+++|+.|+|++|.++.++ .+..+ +|++|+|++|.+.+.. . +..++ T Consensus 38 ~~l~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~--~-~~~~~ 107 (220) T 4r58_A 38 NELNSIDQIIANNSDIKSVQGI----QYLPNLKTLKLSNNKITDIS---ALKQLNNLGWLDLSNNGITDIS--A-LKNLA 107 (220) T ss_dssp HHHTTCCEEECCSSCCCCCTTG----GGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG--G-GTTCT T ss_pred hhcccceEEecCCCCcccchhc----cCCCCCCEEECCCCcccCch---hhccCCCCCEEECcCCCcCChH--H-hcCCC Confidence 4678999999999999998764 78999999999999999876 37888 9999999999998864 3 88999 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +|+.|++++|.+...+.+..+++|+.|++++ |.+..++. +. .+++|+.|++ .|.+..++. ...++. T Consensus 108 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~--------n~l~~~~~-~~---~~~~L~~L~l~~n~l~~~~~-~~~~~~ 174 (220) T 4r58_A 108 SLHTLDLSNNGITDISALKNLDNLHTLDLSN--------NGITDISA-LK---NLDNLHTLDLSNNGITDISA-LKNLTS 174 (220) T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCS--------SCCCCCGG-GT---TCTTCCEEECCSSCCCCCGG-GTTCTT T ss_pred CCCEEECCCCCCcCchhhcCCCcCCEEEccC--------CCcccchh-hc---CCCCCCEEECcCCccccCHh-HcCCCC Confidence 9999999999877777788999999995544 44444332 22 6899999999 787776543 567899 Q ss_pred cceeecCCccccCCCh Q FBpp0305286 329 YGYKLYNRNQKRQHSS 344 (559) Q Consensus 329 L~~L~ls~N~i~~~~~ 344 (559) |++|++++|.+..... T Consensus 175 L~~L~l~~n~l~~~~~ 190 (220) T 4r58_A 175 LHTLDLSNNGITDISA 190 (220) T ss_dssp CCEEECCSSCCCCCGG T ss_pred CCEEECCCCCCCChHH Confidence 9999999999885433No 86>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Probab=99.49 E-value=1.4e-13 Score=142.41 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=45.6 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|++++|++..++.+ ..+++|+.|++++|+++.++. +..+ +|+.|++++|.+.+... +..++ T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~ 221 (347) T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTPI----ANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP---VANMT 221 (347) T ss_dssp TTCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GGGCT T ss_pred hhCccCCEEeccCCccccchhc----cCCCcCcEEEecCCcCCCccc---ccCCCcccEeeccCCCCCCChh---hhcCC Confidence 4455555555555555554432 445555555555555554442 3344 44455555544444332 33444 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQL 276 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L 276 (559) +|+.|++++|.......+..+++|+.| T Consensus 222 ~L~~L~l~~n~l~~~~~~~~l~~L~~L 248 (347) T 4fmz_A 222 RLNSLKIGNNKITDLSPLANLSQLTWL 248 (347) T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEE T ss_pred cCCEEECCCCccCCCcccccCcCCCEE Confidence 444444444433333224444444444No 87>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Probab=99.49 E-value=1.5e-13 Score=136.16 Aligned_cols=153 Identities=22% Similarity=0.188 Sum_probs=99.4 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+.... ...+..+++|++|+|++|+|+.++.. .+..+++|+.|+|++|+|+.++. ..+.. T Consensus 35 ~~l~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~ 105 (251) T 3m19_A 35 ADTEKLDLQSTGLATLS------DATFRGLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPL-GVFDH 105 (251) T ss_dssp TTCCEEECTTSCCCCCC------TTTTTTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCT-TTTTT T ss_pred CCCCEEEecCCCCCeeC------HHHhcCcccCCEEECCCCcCCEeChh--hcccCCCCCEEECCCCccCccCH-hHhcC Confidence 34555666666555321 12235677888888888888776553 34677888888888888887763 45677 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccC Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDD 300 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~ 300 (559) + +|++|+|++|.+....... +..+++|+.|++++|.+.. ...+..+++|+.| ++++|.++.++..... T Consensus 106 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~N~l~~~~~~~~~ 176 (251) T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL--------SLSTNQLQSVPHGAFD 176 (251) T ss_dssp CTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCSCCCTTTTT T ss_pred ccCCCEEECCCCcCCccCHhh-cCCCCCCCEEECCCCcCCeECHHHhCCCCCCCEE--------ECCCCcccccCHhHHh Confidence 7 7888888888887766654 6777888888888875543 2346677788888 4445555444432111 Q ss_pred cccccccccccc-ccce Q FBpp0305286 301 TEERFKLKKYYD-DQAM 316 (559) Q Consensus 301 ~~~l~~L~~L~l-~N~l 316 (559) .+++|+.|++ +|.+ T Consensus 177 --~l~~L~~L~l~~N~~ 191 (251) T 3m19_A 177 --RLGKLQTITLFGNQF 191 (251) T ss_dssp --TCTTCCEEECCSCCB T ss_pred --CCCCCCEEEEeCCCc Confidence 5677788888 4443No 88>4xgo_A APL1B, anopheles plasmodium-responsive leucine-rich REPE 1B; protein binding; HET: NAG; 1.74A {Anopheles gambiae} Probab=99.48 E-value=2.7e-13 Score=140.62 Aligned_cols=43 Identities=30% Similarity=0.438 Sum_probs=21.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDL 215 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l 215 (559) .++++|++|+|++|.++.++.. .+..+++|+.|++++|+++.+ T Consensus 92 ~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~ 134 (356) T 4xgo_A 92 HNTPKLTMMSMSNNNLERIEDD--TFQATTALQNLQLSSNRLTHV 134 (356) T ss_dssp TTCTTCCEEECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC T ss_pred cccccCCEEECCCCCCcccCHh--hcCCcccCCEEECCCCCCCcc Confidence 4455555555555555554332 234555555555555555543No 89>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Probab=99.48 E-value=1.4e-13 Score=142.31 Aligned_cols=210 Identities=16% Similarity=0.149 Sum_probs=149.2 Q ss_pred ccccccCchhHHhHHHHHhcccccccccccC------------CCCCCCccccccccCCcchhhhHHHHHHhhccCCCcc Q FBpp0305286 110 MMCAQITDEFTTAIQEALRSRYEVDSRTLDL------------SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVT 177 (559) Q Consensus 110 ~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdL------------s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~ 177 (559) .+.++++.+.+..+.. .......+.+++ ..+.+|+.|.+.+|.+..... +..+++|+ T Consensus 112 L~~L~L~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~~l~~L~ 180 (347) T 4fmz_A 112 LRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--------IANLTDLY 180 (347) T ss_dssp CSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCS T ss_pred CCEEECCCCcccCchh---hccCCCceEEECCCCCccccChhhhhCccCCEEeccCCccccchh--------ccCCCcCc Confidence 3446666666655543 111133344443 346677788888777664321 47889999 Q ss_pred EEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeC Q FBpp0305286 178 SLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHG 256 (559) Q Consensus 178 ~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl 256 (559) .|++++|+++.++.+ ..+++|+.|++++|.++.++. +..+ +|++|++++|.+.+... +..+++|+.|++ T Consensus 181 ~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 250 (347) T 4fmz_A 181 SLSLNYNQIEDISPL----ASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEI 250 (347) T ss_dssp EEECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEEC T ss_pred EEEecCCcCCCcccc----cCCCcccEeeccCCCCCCChh---hhcCCcCCEEECCCCccCCCcc---cccCcCCCEEEC Confidence 999999999988764 788999999999999988763 6777 89999999999988765 778999999999 Q ss_pred CCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeec Q FBpp0305286 257 CVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLY 334 (559) Q Consensus 257 ~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~l 334 (559) ++|.+...+.+..+++|+.|++++| .+..++. +. .+++|+.|++ +|.+...... ...++.|++|++ T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n--------~l~~~~~-~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 318 (347) T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSN--------QISDISV-LN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347) T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSS--------CCCCCGG-GG---GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC T ss_pred CCCCccCChhHhcCCCCCEEECCCC--------cCCCchh-hc---CCCCCCEEeCcCCcCCCcChHHhcCCcCCCEEEC Confidence 9997777777888999999955444 4444322 22 5788999999 6666544322 356788999999 Q ss_pred CCccccCCChhhhhhhhh Q FBpp0305286 335 NRNQKRQHSSFAQNAKLQ 352 (559) Q Consensus 335 s~N~i~~~~~~~rl~~L~ 352 (559) ++|.+....++..+..|. T Consensus 319 ~~n~l~~~~~~~~l~~L~ 336 (347) T 4fmz_A 319 SQNHITDIRPLASLSKMD 336 (347) T ss_dssp CSSSCCCCGGGGGCTTCS T ss_pred cCCCcCcchHHHHhhhch Confidence 999888655544444433No 90>4u08_A LIC11098; LRR protein, pathogen, virulence factor, unknown function; 1.95A {Leptospira interrogans serogroupicterohaemorrhagiae serovar copenhageni} Probab=99.48 E-value=1.7e-13 Score=144.29 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=122.4 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+.+++.|.+.+|.+..+ +. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|+++.++. .+ T Consensus 179 ~~~~L~~L~l~~n~l~~~---~~----~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~L~~L~l~~n~l~~l~~--~~ 246 (398) T 4u08_A 179 QLRNLESLGLDHNQLNVL---PK----EIGQLQNLQILHLRNNQLTTLPKE---IGQLQNLQKLLLNKNKLTTLPK--EI 246 (398) T ss_dssp GCTTCCEEECTTSCCCCC---CG----GGGGCTTCCEEECCSSCCSCCCGG---GGGCTTCCEEECCSSCCCCCCG--GG T ss_pred CCCCCCEEECcCCcCCcC---Ch----hHhcCCCCCEEECCCCccCcCChh---HhhCCCCCEEECCCCccccCCh--HH Confidence 456677777777766522 11 235788888888888888877654 4678888888888888887764 56 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) ..+ +|++|++++|.+...+.. +..+++|+.|++++|.+... ..+..+++|+.| ++++|.+..++..+. T Consensus 247 ~~~~~L~~L~l~~n~l~~l~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L--------~l~~n~l~~l~~~~~ 316 (398) T 4u08_A 247 GQLQNLQKLKLYENQLTTLPKE--IGQLQNLQELDLDGNQLTTLPENIGQLQRLQTL--------YLGNNQLNFLPKEIG 316 (398) T ss_dssp GGCTTCCEEECCSCCCCCCCGG--GGGCTTCCEEECTTCCCSCCCGGGGGCTTCCEE--------ECTTCCCSCCCGGGG T ss_pred hCCCCCCEEECcCCcCccCChH--HhCccCCCEEECcCCcCCcCChhhhcCcCcCEE--------ECCCCccccCCHHHh Confidence 777 888888888888866543 77888888888888865432 446677888888 444444444444332 Q ss_pred Ccccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) .+++|+.|++ +|.+..++.....++.|++|++++|.++. T Consensus 317 ---~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~l~~ 356 (398) T 4u08_A 317 ---QLRNLESLDLEHNQLNALPKEIGKLQKLQTLNLKYNQLAT 356 (398) T ss_dssp ---GCTTCCEEECTTSCCSCCCGGGGGCTTCCEEECCSSCCSC T ss_pred ---CCCCCCEEECCCCcCcCCChHHhcCCCCCEEECCCCcCcc Confidence 5777888888 66666554444566778888888887764No 91>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A Probab=99.48 E-value=3.3e-14 Score=131.23 Aligned_cols=134 Identities=20% Similarity=0.260 Sum_probs=102.3 Q ss_pred CccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHh Q FBpp0305286 283 GLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLAL 362 (559) Q Consensus 283 l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L 362 (559) ...+...|+++||..++. ++..|..+|.+++.++++.... +.++|....+. ..+..|..+|...| T Consensus 11 ~~~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~S~~s~~~~~~--------~~n~n~~~~~~-----~~~~~G~~~I~~~l 75 (154) T 2qiy_A 11 VQDICFAFLQNYYERMRT--DPSKLAYFYASTAELTHTNYQS--------KSTNEKDDVLP-----TVKVTGRENINKFF 75 (154) T ss_dssp HHHHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEEECTTC--------C----CCSSCC-----EEEEESHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHhC--CHHHHHHhhCCCcEEEEecCCC--------CCCcccccccc-----eeEecCHHHHHHHH Confidence 446788999999999996 8999999999999988864211 11233211111 24578999999999 Q ss_pred hc----CCCCCcCCCceeeeeEeec--CCEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCC-CcEEEEccceEEeeCC Q FBpp0305286 363 SR----LPLMHTDLENVGLDIQVFT--SSLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNS-PGWLITNDMLCITSTM 435 (559) Q Consensus 363 ~~----LP~t~h~lssl~vD~~~~~--~~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n-~~~~I~ND~l~i~~~~ 435 (559) .. +|.++|+++++ |+++.. +..++|+|+|.|++.+. ..|+|+|+|+|+|+++ ++|+|.||+|++++.. T Consensus 76 ~~l~~~~p~~~h~i~s~--d~q~~~~~~~~ili~V~G~~~~~~~---~~r~F~qtFvL~p~~~~~~~~I~nD~fr~~~~~ 150 (154) T 2qiy_A 76 SRNDAKVRSLKLKLDTI--DFQYTGHLHKSILIMATGEMFWTGT---PVYKFCQTFILLPSSNGSTFDITNDIIRFISNS 150 (154) T ss_dssp HHTHHHHTTEEEEEEEE--EEEEESGGGCEEEEEEEEEEEETTC---CCEEEEEEEEEEECC---CEEEEEEEEEEECC- T ss_pred HhhcccCCCeEEEEEEE--eeEEccCCCCEEEEEEEEEEEECCC---CceEEeEEEEEEEcCCCCeEEEEeeEEEEECcc Confidence 98 79999999865 777664 67899999999998764 6999999999999875 6799999999999765 Q ss_pred C Q FBpp0305286 436 P 436 (559) Q Consensus 436 ~ 436 (559) . T Consensus 151 ~ 151 (154) T 2qiy_A 151 F 151 (154) T ss_dssp - T ss_pred c Confidence 4No 92>4r6g_A Leucine rich repeats DLRR_K; leucine rich motifs, de novo protein; 2.80A {Synthetic construct} Probab=99.48 E-value=4.3e-14 Score=151.86 Aligned_cols=183 Identities=21% Similarity=0.144 Sum_probs=129.2 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +.++.+|+.|.+.+|.+..+ ...+++++++|++|+|++|+++.++.. .+..+++|+.|++++|+++.++. . T Consensus 80 l~~l~~L~~L~l~~n~l~~l------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~ 150 (464) T 4r6g_A 80 LKELTNLGWLNLSNNQLETL------PQGVFEKLTNLTTLNLSNNQLTSLPQG--VFERLASLTTLNLSNNNLANLND-R 150 (464) T ss_dssp GTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCCCBCCT-T T ss_pred hhcCCCCCEEECCCCccCcc------CHhHhcCCCCCCEEECCCCcCCcCChh--HhcCCCcCCEEECcCCcCCeeCH-h Confidence 45677788888887776532 222347888999999999998888763 34788899999999998888763 3 Q ss_pred ccCCC-CccEEEeecCcCCCcch-----h--HHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhh Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSV-----D--VIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQD 289 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~-----~--~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n 289 (559) .+.++ +|++|++++|.+..... . ..+..+++|+.|++++|... +...+..+++|+.| ++.+| T Consensus 151 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n 222 (464) T 4r6g_A 151 VFEGLTNLTTLNLSNNNLARLWKHANPGGPIYFLKGLTNLTTLNLSNNGFDELPKEVFKDLTSLTTL--------NLSNN 222 (464) T ss_dssp TTTTCTTCCEEECTTSCCGGGGCTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSS T ss_pred HhccCCCCCEEECCCCcchhhhhccCCCcchhhhcCCCCCCEEECCCCcCCcCCHHHhCCCCCCCEE--------ECCCC Confidence 57788 89999999988875421 1 12677888999998888554 33446778888888 44555 Q ss_pred hhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 290 FISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 290 ~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) .++.++..... .+++|+.|++ +|.+..++.. ...++.|++|++++|.+.. T Consensus 223 ~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 274 (464) T 4r6g_A 223 QLTSLPQGVFE--RLTNLTTLNLSNNQLTSLPQGVFERLTNLTTLNLSNNQLTS 274 (464) T ss_dssp CCCCCCTTSST--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC T ss_pred ccCcCCHHHHh--cCcCCcEEECCCCCcCccCHHHHhCCCCCCEEECCCCccCc Confidence 55554443222 5778888888 6666665544 4566788888888887764No 93>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Probab=99.48 E-value=1.3e-13 Score=154.41 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=141.4 Q ss_pred cccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCC Q FBpp0305286 137 TLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLG 216 (559) Q Consensus 137 ~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~ 216 (559) ...++.+.+|+.|.+.+|.+..+. .+..+++|+.|+|++|+|+.++.+ ..+++|+.|+|++|+|+.++ T Consensus 36 ~~~~~~l~~L~~L~l~~~~i~~l~--------~l~~l~~L~~L~Ls~n~i~~~~~l----~~l~~L~~L~Ls~n~l~~l~ 103 (605) T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ--------GIQYLPNVTKLFLNGNKLTDIKPL----TNLKNLGWLFLDENKIKDLS 103 (605) T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT--------TGGGCTTCCEEECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCT T ss_pred ccchhhCCCCCEEECcCCCCCCCh--------hHccCCCCCEEEeeCCCCCCChhh----ccCCCCCEEEccCCCCCCCh Confidence 344557888888998888877542 236899999999999999998763 78999999999999999876 Q ss_pred ccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 217 ELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 217 ~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) .+..+ +|++|+|++|.+..... +..+++|+.|+++.|.+...+.+..+++|+.| ++++|.+...+ T Consensus 104 ---~l~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L--------~Ls~N~l~~~~ 169 (605) T 1m9s_A 104 ---SLKDLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDITVLSRLTKLDTL--------SLEDNQISDIV 169 (605) T ss_dssp ---TSTTCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEE--------ECCSSCCCCCG T ss_pred ---hhccCCCCCEEECcCCCCCCCcc---ccCCCCCCEEECCCCCCCCchHHhcCCCCCEE--------EecCCcCCCch Confidence 47888 99999999999998754 78899999999999987777788899999999 55555555443 Q ss_pred ccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) . +. .+++|+.|++ .|.+..++ ....++.|+.|++++|.+.+ T Consensus 170 ~-l~---~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~n~i~~ 211 (605) T 1m9s_A 170 P-LA---GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605) T ss_dssp G-GT---TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC T ss_pred h-hc---ccCCCCEEECCCCCCCCCh-hhcCCCCCCEEEeeCCcccC Confidence 3 22 6899999999 77777763 45678899999999998865No 94>4ufr_A Leucine-rich repeat-containing G-protein coupled 5; signaling protein, WNT, LGR; HET: NAG; 2.20A {Homo sapiens} PDB: 4ufs_A Probab=99.48 E-value=1.4e-13 Score=148.79 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=143.9 Q ss_pred ccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-C Q FBpp0305286 147 PELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-S 225 (559) Q Consensus 147 ~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~ 225 (559) +.|.+.+|.+... ....+..+++|++|+|++|.++.++.. .+.++++|+.|+|++|+++.++. ..+.++ + T Consensus 41 ~~L~Ls~n~i~~~------~~~~l~~l~~L~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 111 (484) T 4ufr_A 41 SYLDLSMNNISQL------LPNPLPSLRFLEELRLAGNALTYIPKG--AFTGLYSLKVLMLQNNQLRHVPT-EALQNLRS 111 (484) T ss_dssp EEEECCSSCCCCC------SSCCGGGCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCCSBCCS-STTTTCTT T ss_pred eEEECcCCcCccc------ChhhhcccCCCCEEECCCCcCcEECHH--HhCCCCCCCEEEccCCcCCccCh-HHhcccCC Confidence 4556666666532 222347899999999999999998763 35899999999999999998873 478899 9 Q ss_pred ccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCccc Q FBpp0305286 226 CKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEE 303 (559) Q Consensus 226 L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~ 303 (559) |++|+|++|.+....+.. +..+++|++|++++|.+. +...+..+++|+.| ++..|.+..++..... + T Consensus 112 L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~L~~L--------~l~~n~l~~i~~~~~~--~ 180 (484) T 4ufr_A 112 LQSLRLDANHISYVPPSC-FSGLHSLRHLWLDDNALTEIPVQAFRSLSALQAM--------TLALNKIHHIPDYAFG--N 180 (484) T ss_dssp CCEEECCSSCCCBCCTTT-TTTCTTCCEEECCSSCCCSCCTTGGGSCTTCCEE--------ECCSSCCCEECTTTTT--T T ss_pred CCEEECCCCcCCccChhH-ccCcccCCEEECCCCcCCeeChhHhccCCCCCEE--------ECCCCcCCccCHHHhc--c Confidence 999999999999988776 899999999999999654 34568899999999 5555556555542222 6 Q ss_pred ccccccccc-ccceeeeecC-CcCccccceeecCCccccCC-Chhhhhhhhhh Q FBpp0305286 304 RFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQH-SSFAQNAKLQV 353 (559) Q Consensus 304 l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~-~~~~rl~~L~~ 353 (559) +++|+.|++ .|.+..+... +..++.|++|++++|.+... ..+..+..|.. T Consensus 181 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~ 233 (484) T 4ufr_A 181 LSSLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEFPTAIRTLSNLKE 233 (484) T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGGGCTTCCE T ss_pred CCcCCEEECCCCccCccChhHhccCCCCCEEECCCCCcccchhhhhccccccE Confidence 899999999 7788777654 56789999999999988753 33444444433No 95>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Probab=99.48 E-value=3.7e-14 Score=134.69 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=62.2 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) +++|++|++++|.++.++.+ ..+++|+.|+|++|.++.++ .+..+ +|++|++++|.+.+..+.. +..+++| T Consensus 43 ~~~L~~L~l~~~~i~~l~~~----~~~~~L~~L~l~~n~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~-l~~l~~L 114 (197) T 4ezg_A 43 MNSLTYITLANINVTDLTGI----EYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSL 114 (197) T ss_dssp HHTCCEEEEESSCCSCCTTG----GGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTC T ss_pred cCCCcEEEeeCCcccCcHHH----ccCCCCCEEEeeCCCccchh---hhcCCCCCCEEEeeCCccCccchHH-HhCCCCC Confidence 34444444444444444421 34444455555544444333 23344 4444555544444422222 3444445 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhh-hhhhcccccCcccccccccccc-ccceeeeecCCcCcc Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDF-ISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNY 327 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~-L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~ 327 (559) +.|++++|.+.. +..+..+++|+.|++ ++|. +..++ .+. .+++|+.|++ .|.+.+++ ....++ T Consensus 115 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l--------~~n~~i~~~~-~~~---~~~~L~~L~l~~n~l~~~~-~l~~l~ 181 (197) T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDL--------SYNGAITDIM-PLK---TLPELKSLNIQFDGVHDYR-GIEDFP 181 (197) T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEEC--------CSCTBCCCCG-GGG---GCSSCCEEECTTBCCCCCT-TGGGCS T ss_pred CEEeccCCccCchhhhhhhcCCCCCEEeC--------ccCCCcccch-hhh---cCCCCCEEEccCCcCCChH-HHHhCC Confidence 555544443322 233444444444422 2222 22222 111 3445555555 44444433 334445 Q ss_pred ccceeecCCcccc Q FBpp0305286 328 VYGYKLYNRNQKR 340 (559) Q Consensus 328 ~L~~L~ls~N~i~ 340 (559) .|++|++++|.++ T Consensus 182 ~L~~L~l~~n~i~ 194 (197) T 4ezg_A 182 KLNQLYAFSQTIG 194 (197) T ss_dssp SCCEEEECBC--- T ss_pred CCCEEEeeCCCcC Confidence 5666666666554No 96>4xgo_A APL1B, anopheles plasmodium-responsive leucine-rich REPE 1B; protein binding; HET: NAG; 1.74A {Anopheles gambiae} Probab=99.48 E-value=5.3e-13 Score=138.39 Aligned_cols=173 Identities=14% Similarity=0.021 Sum_probs=89.2 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) +.+|+.|.+.+|.+... ....+..+++|+.|++++|+++.++ +..+++|+.|++++|.++.+.....+. T Consensus 94 l~~L~~L~l~~n~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~l~ 162 (356) T 4xgo_A 94 TPKLTMMSMSNNNLERI------EDDTFQATTALQNLQLSSNRLTHVD-----LALIPSLFHVNVSYNLLSTLAIPIAVE 162 (356) T ss_dssp CTTCCEEECCSSCCCBC------CTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSSCCSEEECCTTCS T ss_pred cccCCEEECCCCCCccc------CHhhcCCcccCCEEECCCCCCCccC-----hhHcCcccEEeccCCccceeccccccc Confidence 45556666666555422 1122356777777777777777652 145566666666666655422110110 Q ss_pred ---------------CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCc Q FBpp0305286 223 ---------------KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGL 284 (559) Q Consensus 223 ---------------~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~ 284 (559) .. +|++|++++|.+.+. .. +..+++|+.|++++|.+.. ...+..+++|+.|+ T Consensus 163 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~--~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~------- 232 (356) T 4xgo_A 163 ELDASHNTINVVRGPVNVELTILKLQHNNLTDT--AW-LLNYPGLVDVDLSYNQLEKITYQHFVKMQRLERLY------- 232 (356) T ss_dssp EEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCSCCCGGGGTTCSSCCEEE------- T ss_pred eEECCCCeeeeecCCcCccccEEECCCCCCCCc--hh-hhccCCCcEEECCCCcCCccCHHHHhhCccCCEEe------- Confidence 01 455666666655554 11 5566666666666664432 23455566666663 Q ss_pred cchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 285 KFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 285 ~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) +++|.+..++.... .+++|+.|++ .|.+..++.....++.|++|++++|.+. T Consensus 233 -L~~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~l~~n~l~ 285 (356) T 4xgo_A 233 -VSNNRLVALDFYGR---PIPTLKVLDLSHNHLMWVEHNQAQFDKLQYLYLDHNSIV 285 (356) T ss_dssp -CCSSCCCEEEECSC---CCTTCCEEECCSSCCSEEEECTTTTTTCSEEECCSSCCC T ss_pred -CCCCcceecCCCCC---CCCccCEEECCCCcccccccccccCCcCCEEECCCCcce Confidence 33333333222221 3555666666 5555555444445555666666665554No 97>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Probab=99.48 E-value=3.1e-13 Score=132.28 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=116.0 Q ss_pred CccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccE Q FBpp0305286 175 HVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKN 253 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~ 253 (559) ..+.+++++|+++.++.. -.++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.+..++... +..+++|+. T Consensus 20 ~~~~l~~~~~~l~~ip~~-----~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~i~~~~-~~~l~~L~~ 92 (229) T 3e6j_A 20 SGTTVDCRSKRHASVPAG-----IPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTV 92 (229) T ss_dssp ETTEEECTTSCCSSCCSC-----CCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE T ss_pred ECCEEEecCCCCCCCCCC-----CCCCCeEEECCCCccCeeCH-HHcccCcCCCEEECCCCCCCccCHhH-cCCCcCCCE Confidence 467888888888888764 23788889999998888753 467788 8899999999888777654 788888999 Q ss_pred EeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCcccc Q FBpp0305286 254 VHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVY 329 (559) Q Consensus 254 Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L 329 (559) |++++|.+.. ...+..+++|+.| ++++|.++.++..+. .+++|+.|++ .|.+.+++.. +..++.| T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L--------~Ls~N~l~~lp~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229) T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKEL--------FMCCNKLTELPRGIE---RLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229) T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCSCCTTGG---GCTTCSEEECCSSCCCCCCTTTTTTCTTC T ss_pred EECCCCcCceeCHhHhCcccccCee--------EccCCcCcccChhhc---ccccCCEEECCCCccCccCHHHHhcCCCC Confidence 9998886543 3446778888888 555555555554442 6888999999 7878776643 4567899 Q ss_pred ceeecCCccccCCCh Q FBpp0305286 330 GYKLYNRNQKRQHSS 344 (559) Q Consensus 330 ~~L~ls~N~i~~~~~ 344 (559) ++|++++|++.+.+. T Consensus 162 ~~L~l~~N~~~c~c~ 176 (229) T 3e6j_A 162 THAYLFGNPWDCECR 176 (229) T ss_dssp CEEECTTSCBCTTBG T ss_pred CEEEecCCCccCCcc Confidence 999999999998764No 98>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 4mqw_X* 1xwd_C* Probab=99.48 E-value=2.2e-14 Score=149.53 Aligned_cols=201 Identities=14% Similarity=0.063 Sum_probs=126.0 Q ss_pred EEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCcccccccc-CCcchhhhHHHHHHhhccCCCcc Q FBpp0305286 100 VRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVT 177 (559) Q Consensus 100 l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~ 177 (559) +...| .+|+..+.++++.+.++.+. .-.++++.+|+.|.+.+| .+..+ ....+.++++|+ T Consensus 21 l~~ip~~~~~~l~~L~L~~n~l~~i~------------~~~~~~l~~L~~L~Ls~n~~i~~i------~~~~~~~l~~L~ 82 (350) T 4ay9_X 21 VTEIPSDLPRNAIELRFVLTKLRVIQ------------KGAFSGFGDLEKIEISQNDVLEVI------EADVFSNLPKLH 82 (350) T ss_dssp CCSCCTTCCTTCSEEEEESCCCSEEC------------TTSSTTCTTCCEEEEECCTTCCEE------CTTSBCSCTTCC T ss_pred cCccCcccCCCCCEEEecCCcCCccC------------HHHhhCCCCCCEEECCCCCCccEe------ChhhhcCCCCCC Confidence 33444 45656566666666553221 123456677777777776 55532 112346778888 Q ss_pred EEEccC-CcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-Ccc--EEEeecC-cCCCcchhHHhccC-CCc Q FBpp0305286 178 SLVLSN-NYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCK--TIFLAGN-GLAKLSVDVIRKML-PQL 251 (559) Q Consensus 178 ~L~Ls~-N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~--~L~L~~N-~l~~~~~~~il~~l-p~L 251 (559) +|+|++ |+|+.++.. .+..+++|+.|+|++|+++.++. +..+ +|+ +|++++| .+..++... +..+ ++| T Consensus 83 ~L~L~~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~---~~~l~~L~l~~L~l~~n~~l~~i~~~~-~~~l~~~L 156 (350) T 4ay9_X 83 EIRIEKANNLLYINPE--AFQNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFES 156 (350) T ss_dssp EEEEEEETTCCEECTT--SBCCCTTCCEEEEEEECCSSCCC---CTTCCBSSCEEEEEESCTTCCEECTTS-STTSBSSC T ss_pred EEECCCCCCccEeCHH--HhCCCCCCCEEeCcCCCCceecC---ccccCcchheEEECcCCCCccccChhh-hhhhcccc Confidence 888887 888777643 34677888888888888887763 5556 666 8888888 676666544 6677 568 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhh-hhhhcccccCcccccccccccc-ccceeeeecCCcCcc Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDF-ISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNY 327 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~-L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~ 327 (559) +.|++++|.+.. ...+.. ++|+.| ++++|. ++.++..... ++++|+.|++ +|.+.++ +...++ T Consensus 157 ~~L~L~~n~l~~i~~~~~~~-~~L~~L--------~L~~n~~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~l--~~~~l~ 223 (350) T 4ay9_X 157 VILWLNKNGIQEIHNSAFNG-TQLDEL--------NLSDNNNLEELPNDVFH--GASGPVILDISRTRIHSL--PSYGLE 223 (350) T ss_dssp EEEECCSSCCCEECTTSSTT-EEEEEE--------ECTTCTTCCCCCTTTTT--TEECCSEEECTTSCCCCC--CSSSCT T ss_pred eEEEecCCCCCccCHHHcCC-CCcCEE--------ECCCCCCcccCCHhHcc--CCCCCCEEeCCCCccccc--Chhhhh Confidence 888888775542 222333 677888 555554 5544432221 5677888888 6666644 334667 Q ss_pred ccceeecCCc Q FBpp0305286 328 VYGYKLYNRN 337 (559) Q Consensus 328 ~L~~L~ls~N 337 (559) .|+.|++++| T Consensus 224 ~L~~L~l~~n 233 (350) T 4ay9_X 224 NLKKLRARST 233 (350) T ss_dssp TCCEEECTTC T ss_pred hHHHHhhccC Confidence 7777777776No 99>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Probab=99.48 E-value=5.7e-14 Score=157.53 Aligned_cols=84 Identities=14% Similarity=0.072 Sum_probs=36.9 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ 250 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~ 250 (559) .+++|++|+|++|+++.++.. +.++++|+.|+|++|+++.++....+.++ +|++|+|++|.+.+..+.. +..+++ T Consensus 395 ~~~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~ 470 (635) T 4g8a_A 395 GTISLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSS 470 (635) T ss_dssp SCSCCCEEECCSCSEEEECSC---CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT-TTTCTT T ss_pred CCCCCCEEECCCCCcccchhh---hcCCCCCCEEECCCCcCCCCCcchhhcCCCCCCEEECCCCccCCCCccc-ccCCCC Confidence 444455555555554444321 24444444444444444443322234444 4444444444444433332 344444 Q ss_pred ccEEeCCCC Q FBpp0305286 251 LKNVHGCVQ 259 (559) Q Consensus 251 L~~Ldl~~N 259 (559) |+.|++++| T Consensus 471 L~~L~L~~n 479 (635) T 4g8a_A 471 LEVLKMAGN 479 (635) T ss_dssp CCEEECTTC T ss_pred CCEEECCCC Confidence 444444444No 100>4qdh_A Variable lymphocyte receptor B, TOLL-like recepto chimera; glycosylation, immune system; HET: NAG; 2.40A {Eptatretus burgeri} Probab=99.47 E-value=6.9e-14 Score=149.74 Aligned_cols=161 Identities=15% Similarity=0.071 Sum_probs=125.8 Q ss_pred hccCCCccEEEccCCcCCCCcCccccccCC-CCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhcc Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSLKAFAGNSQSF-ASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKM 247 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l-~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~ 247 (559) +..+++|+.|+|++|+++.+.+. .+..+ ++|+.|+|++|.++.++ ...+..+ +|++|+|++|.+....... +.. T Consensus 211 ~~~l~~L~~L~Ls~n~l~~~~~~--~l~~lp~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~ 286 (438) T 4qdh_A 211 FQGLSGLLKLDLSQNNLHILRPQ--NLDNLPKSLKLLSLRDNYLSFFN-WTSLSFLPNLEVLDLAGNQLKALTNGT-LPN 286 (438) T ss_dssp TTEETTCCEEECTTSCCSCCCHH--HHHTSCTTCCEEECTTSCCSCCC-GGGGGGCTTCCEEECTTSCCCSBCSSC-CCT T ss_pred hcCcCCCCEEECCCCCCCccChh--hhhccCcccceeECCCCCccccC-HhHhccCCCCCEEECCCCcCcccchhh-ccC Confidence 46788999999999999887543 23667 48999999999999877 3478888 9999999999999887665 788 Q ss_pred CCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCccc-ccccccccc-ccceeeeecCC Q FBpp0305286 248 LPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEE-RFKLKKYYD-DQAMFSLSVPV 323 (559) Q Consensus 248 lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~-l~~L~~L~l-~N~l~sl~~~~ 323 (559) +++|+.|++++|.+.. +..+..+++|+.| ++++|.++.+...... . +++|+.|++ .|.+.+++... T Consensus 287 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L--------~Ls~N~l~~~~~~~~~--~~~~~L~~L~L~~N~l~~l~~~~ 356 (438) T 4qdh_A 287 GTLLQKLDVSSNSIVSVVPAFFALAVELKEV--------NLSHNILKTVDRSWFG--PIVMNLKELALDTNQLKSVPDGI 356 (438) T ss_dssp TCCCCEEECTTSCCCCBCTTSSTTCTTCCEE--------ECCSSCCCCCCTTTSC--TTGGGCSEEECCSSCCCCCCTTT T ss_pred CccccEEECCCCcccccCHhHcCCCccCCEE--------ECcCCcceeeCHHHhh--hhhccceEeeccCCcccccChhh Confidence 8999999999996543 4567889999999 5555555555442221 3 388999999 88888766543 Q ss_pred -cCccccceeecCCccccCCCh Q FBpp0305286 324 -QLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 324 -~~~~~L~~L~ls~N~i~~~~~ 344 (559) ..++.|+.|++++|++.|.+. T Consensus 357 ~~~l~~L~~L~l~~Np~~c~c~ 378 (438) T 4qdh_A 357 FDRLTSLQKIWLHTNPWDCSCP 378 (438) T ss_dssp TTTCTTCCEEECCSSCBCCCHH T ss_pred hhcccCcCEEEecCCCCcCCCC Confidence 667899999999999998764No 101>4u09_A LIC12759, LIC12759; LRR protein, pathogen, virulence factor, unknown function; HET: MES; 1.95A {Leptospira interrogans serovar copenhafiocruz l1-130} Probab=99.47 E-value=1.8e-13 Score=144.11 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=103.7 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) ++.+|+.|.+.+|.+..+ +. .+..+++|++|+|++|+++.++.. +..+++|+.|++++|.++.++. .+ T Consensus 63 ~l~~L~~L~L~~~~l~~l---~~----~~~~l~~L~~L~L~~~~l~~l~~~---l~~l~~L~~L~l~~n~l~~l~~--~l 130 (401) T 4u09_A 63 QLKDLQKLNLNNNKLTVL---PK----EIGQLQNLQELSLHSNELVNLPKE---IGQFKNLQKLNLDNNKLTVLPK--EI 130 (401) T ss_dssp GCTTCCEEECTTSCCSCC---CG----GGGGCTTCSEEECCSSCCSCCCGG---GGGCTTCCEEECCSSCCSCCCG--GG T ss_pred CCCCCCEEECCCCccccc---ch----hhhhCcCCCEEECCCCccccCChh---hhccccCCEEECCCCcCcccch--Hh Confidence 455666666666655421 11 225667777777777777666543 3566777777777777776653 45 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) ..+ +|++|++++|.+...+.. +..+++|+.|++++|..... ..+..+++|+.| ++++|.+..++..+. T Consensus 131 ~~l~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L--------~l~~n~l~~~~~~l~ 200 (401) T 4u09_A 131 GQLQNLQELSLLSNKLISLPTE--IEQLKSLKNLDLNHNEFTTVSKEVMLLETLENL--------DLRSNKLKTIPKEIR 200 (401) T ss_dssp GGCTTCCEEECCSCCCSCCCGG--GGGCTTCCEEECCSSCCSSCCTTGGGCTTCSEE--------ECCSSCCCCCCGGGG T ss_pred hcCCCCCEEECCCCCccccChH--HHhCCCCCEEEccCCCCCCCchhhhhhccCCEE--------ECcCCchhhhchhhc Confidence 666 777777777776655433 56677777777777644322 233456667777 333444443333332 Q ss_pred Ccccccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) .+++|+.|++ +|.+..++.....++.|++|++++|.+. T Consensus 201 ---~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~~~ 239 (401) T 4u09_A 201 ---QLKSLKVLMLTGNQLTSLPKEIEQLQNLKTLNLGENRFQ 239 (401) T ss_dssp ---GCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCS T ss_pred ---CCCCCCEEECCCCccccCChhHccCCCCCEEECCCCccc Confidence 4667777777 5666555444455667777777777665No 102>4v2d_A FLRT2, fibronectin leucine rich transmembrane protein 2; signaling protein, leucine-rich repeat, UNC5; 2.50A {Homo sapiens} PDB: 4v2c_A Probab=99.47 E-value=6.6e-14 Score=143.76 Aligned_cols=120 Identities=18% Similarity=0.123 Sum_probs=60.4 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+.... ++ ..+.++++|++|+|++|+|+.++.. ..++|+.|+|++|+|+.++. ..+.+ T Consensus 28 ~~L~~L~L~~n~i~~~~-~p----~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~L~~L~L~~n~l~~~~~-~~~~~ 96 (326) T 4v2d_A 28 EGVTVLYLHNNQINNAG-FP----AELHNVQSVHTVYLYGNQLDEFPMN-----LPKNVRVLHLQENNIQTISR-AALAQ 96 (326) T ss_dssp SSCSEEECCSSCCCTTC-CC----GGGTTCCSCCEEECCSCCCCBCCSS-----CCTTCCEEECTTSCCCBBCH-HHHHH T ss_pred CCccEEEccCCccCccc-ch----hhhcccCeeeEEEcCCCcccccccc-----ccccceEEECcCCCCCccCH-hHhhc Confidence 34555555555554210 11 1224566666666666666655432 12556666666666665541 24555 Q ss_pred C-CccEEEeecCcCCCc--chhHHhccCCCccEEeCCCCcCCCchhccCCCCcccc Q FBpp0305286 224 L-SCKTIFLAGNGLAKL--SVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQL 276 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~--~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L 276 (559) + +|++|+|++|.+.+. .+.. +..+++|+.|++++|.+...+ ...+++|+.| T Consensus 97 l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~~~L~~L 150 (326) T 4v2d_A 97 LLKLEELHLDDNSISTVGVEDGA-FREAISLKLLFLSKNHLSSVP-VGLPVDLQEL 150 (326) T ss_dssp CTTCCEEECCSSCCCTTTBCTTT-GGGCTTCCEEECCSCCCSBCC-SCCCTTCCEE T ss_pred ccccCEEeCCCCCcceeccCccc-cccCccCCEEECCCCccCcCC-CcccccCCEE Confidence 5 566666666666543 2222 555666666666665443222 1223455555No 103>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 4aw4_A 1d0b_A 1otn_A 1oto_A 1otm_A Probab=99.47 E-value=1.4e-13 Score=139.57 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=124.3 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|++++|.++.++++ ..+++|+.|+|++|+++.++. +..+ +|++|+|++|.+..... +..++ T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~l----~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---l~~l~ 112 (291) T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSS---LKDLK 112 (291) T ss_dssp HHHHTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGG---GTTCT T ss_pred hhhCcccEEeCcCCCcCcchhH----hcCCCCCEEEccCCCCCcChh---hccCCCCCEEEccCCcCCCChh---HcCCC Confidence 4568899999999999998754 789999999999999998874 7888 99999999999998653 88999 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +|++|++++|.+...+.+..+++|+.|++++|. ++.. ..+. .+++|+.|++ +|.+..+.. ...++. T Consensus 113 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--------l~~~-~~l~---~l~~L~~L~l~~n~l~~~~~-~~~l~~ 179 (291) T 1h6t_A 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--------ITDI-TVLS---RLTKLDTLSLEDNQISDIVP-LAGLTK 179 (291) T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC--------CCCC-GGGG---GCTTCSEEECCSSCCCCCGG-GTTCTT T ss_pred CCCEEEccCCcCCcChhhcCCCcCCEEEccCCc--------CCCc-HHHc---CCCCCCEEECCCCccCCChh-HcCCCC Confidence 999999999987777778899999999555554 4443 2222 6899999999 777777654 677899 Q ss_pred cceeecCCccccCC Q FBpp0305286 329 YGYKLYNRNQKRQH 342 (559) Q Consensus 329 L~~L~ls~N~i~~~ 342 (559) |++|++++|.++.. T Consensus 180 L~~L~l~~n~i~~~ 193 (291) T 1h6t_A 180 LQNLYLSKNHISDL 193 (291) T ss_dssp CCEEECCSSCCCBC T ss_pred CCEEEccCCcCCCC Confidence 99999999998854No 104>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Probab=99.46 E-value=1.3e-13 Score=143.26 Aligned_cols=154 Identities=19% Similarity=0.086 Sum_probs=123.8 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) .++|++|+|++|+|+.++.. .+.++++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.+.+..+.. +..+++| T Consensus 51 ~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 126 (353) T 2z80_A 51 TEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSW-FKPLSSL 126 (353) T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSSCCHHH-HTTCTTC T ss_pred cccCCEEECcCCcCCccCHH--HhccCCCCCEEECCCCcCCccCh-hhccCCCCCCEEECCCCccCccCHHH-hccCccC Confidence 57899999999999988654 35889999999999999998753 478888 9999999999999988776 8899999 Q ss_pred cEEeCCCCcCCCc---hhccCCCCcccccCCCCCCccchh-hhhhhhcccccCcccccccccccc-ccceeeeec-CCcC Q FBpp0305286 252 KNVHGCVQLGEST---EAVDNIPKSQQLQGGGTNGLKFCQ-DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSV-PVQL 325 (559) Q Consensus 252 ~~Ldl~~N~~~~~---~~~~~lp~Lk~L~l~~~~l~~L~~-n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~ 325 (559) ++|++++|.+... ..+..+++|+.| ++++ |.++.++..... ++++|+.|++ +|.+..+.. .... T Consensus 127 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L--------~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353) T 2z80_A 127 TFLNLLGNPYKTLGETSLFSHLTKLQIL--------RVGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKS 196 (353) T ss_dssp SEEECTTCCCSSSCSSCSCTTCTTCCEE--------EEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTT T ss_pred CEEECCCCcccccCcchhhccCCcceEE--------ECCCCccccccCHHHcC--CCCCCCEEECCCCCCCccCHhHhhc Confidence 9999999965432 257788999999 6666 666665543222 6889999999 787777633 3467 Q ss_pred ccccceeecCCcccc Q FBpp0305286 326 NYVYGYKLYNRNQKR 340 (559) Q Consensus 326 ~~~L~~L~ls~N~i~ 340 (559) ++.|++|++++|.+. T Consensus 197 l~~L~~L~L~~n~l~ 211 (353) T 2z80_A 197 IQNVSHLILHMKQHI 211 (353) T ss_dssp CSEEEEEEEECSCST T ss_pred hhccCeeeCCCCcch Confidence 789999999999776No 105>4kng_A Leucine-rich repeat-containing G-protein coupled 5; leucine-rich repeat, cysteine-rich domain, furin-repeat, Pro associated domain, ligand recognition; HET: NAG; 2.50A {Homo sapiens} PDB: 4bsr_A* 4bss_A* 4bst_A* 4bsu_A* Probab=99.46 E-value=1.9e-13 Score=150.03 Aligned_cols=187 Identities=14% Similarity=0.072 Sum_probs=143.8 Q ss_pred ccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-C Q FBpp0305286 147 PELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-S 225 (559) Q Consensus 147 ~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~ 225 (559) +.|.+.+|.+... ....+..+++|++|+|++|.|+.++.. .+.++++|+.|+|++|+|+.++. ..+.++ + T Consensus 40 ~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 110 (531) T 4kng_A 40 SYLDLSMNNISQL------LPNPLPSLRFLEELRLAGNALTYIPKG--AFTGLYSLKVLMLQNNQLRHVPT-EALQNLRS 110 (531) T ss_dssp EEEECTTSCCCCC------CSCCCSCCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSBCCS-STTTTCTT T ss_pred eEEECCCCccCcC------ChhHhccCCCCCEEECCCCcCceeCHH--HhCCCCCCCEEECCCCCCCCcCh-hHhccCCC Confidence 4455556666522 222347899999999999999998764 35899999999999999999873 478999 9 Q ss_pred ccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCccc Q FBpp0305286 226 CKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEE 303 (559) Q Consensus 226 L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~ 303 (559) |++|+|++|.+....+.. +..+++|++|++++|.+.. ...+..+++|+.| ++..|.+..++..... + T Consensus 111 L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~L~~L--------~l~~n~l~~i~~~~~~--~ 179 (531) T 4kng_A 111 LQSLRLDANHISYVPPSC-FSGLHSLRHLWLDDNALTEIPVQAFRSLSALQAM--------TLALNKIHHIPDYAFG--N 179 (531) T ss_dssp CCEEECCSSCCCBCCTTT-TTTCTTCCEEECCSSCCCSCCHHHHTTCTTCCEE--------ECCSSCCCEECTTTTT--T T ss_pred CCEEECCCCccCccCHhH-ccCCCCCCEEECCCCccCccCHhHhcCCCCCCEE--------ECCCCcCCccCHHHhc--c Confidence 999999999999988776 8999999999999996653 3468899999999 5555555555542222 6 Q ss_pred ccccccccc-ccceeeeecC-CcCccccceeecCCccccCC-Chhhhhhhhhh Q FBpp0305286 304 RFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQH-SSFAQNAKLQV 353 (559) Q Consensus 304 l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~-~~~~rl~~L~~ 353 (559) +++|+.|++ .|.+..+... +..++.|++|++++|.+... ..+..+..|.. T Consensus 180 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 232 (531) T 4kng_A 180 LSSLVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEFPTAIRTLSNLKE 232 (531) T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGGGCTTCCE T ss_pred CCCCCEEECCCCccCccCHHHhccCCCCCEEECCCCCcccchhhhhhcccCCE Confidence 899999999 7778777654 46789999999999998753 34444444443No 106>4qxe_A Leucine-rich repeat-containing G-protein coupled 4, linker, variable lymphocyte receptor...; LRR repeats, R-spondins, glycosylation,, membrane; HET: NAG; 2.20A {Homo sapiens} Probab=99.46 E-value=2e-13 Score=146.06 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=142.6 Q ss_pred cCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCcc Q FBpp0305286 139 DLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGEL 218 (559) Q Consensus 139 dLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l 218 (559) .+.++.+|+.|.+.+|.+..+ ....+.++++|++|+|++|+++.++.. .+.++++|+.|+|++|+++.++. T Consensus 76 ~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~- 146 (443) T 4qxe_A 76 ALSGLKELKVLTLQNNQLKTV------PSEAIRGLSALQSLRLDANHITSVPED--SFEGLVQLRHLWLDDNSLTEVPV- 146 (443) T ss_dssp TTTTCTTCCEEECCSSCCSBC------CTTTTTTCTTCCEEECCSSCCCBCCTT--TTTTCTTCCEEECCSSCCCSCCH- T ss_pred HhccCcCCCEEECCCCccCcc------ChhhhcccCCCCEEECcCCCCCeeCHh--HhcCcccCCEEECCCCccccCCh- Confidence 356778888888888877632 122347889999999999999988654 35789999999999999998873 Q ss_pred CccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 219 NYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 219 ~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) ..+.++ +|++|++++|.+.+.+... +..+++|+.|++++|.+. ....+..+++|+.| ++++|.+..++ T Consensus 147 ~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~ 217 (443) T 4qxe_A 147 HPLSNLPTLQALTLALNKISSIPDFA-FTNLSSLVVLHLHNNKIRSLSQHCFDGLDNLETL--------DLNYNNLGEFP 217 (443) T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE--------ECCSSCCCSCC T ss_pred hhcccCcCCCEEECcCCCcceEChhh-hccCCcCCEEECCCCccCccChhhhcCCCCCCEE--------ECCCCcCcccC Confidence 368888 9999999999999887655 889999999999998654 34457788999999 55555555555 Q ss_pred ccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) ..+. .+++|+.|++ .|.+..++.. +..++.|++|++++|.+.. T Consensus 218 ~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 262 (443) T 4qxe_A 218 QAIK---ALPSLKELGFHSNSISVIPDGAFDGNPLLRTIHLYDNPLSF 262 (443) T ss_dssp GGGG---GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE T ss_pred hhhc---CCCCCCEEECCCCCcCccChhhhccCCccCEEECcCCccCc Confidence 5443 5889999999 7777776543 4667899999999998763No 107>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} SCOP: c.10.2.0 PDB: 2v9s_A Probab=99.46 E-value=3.2e-13 Score=131.37 Aligned_cols=154 Identities=11% Similarity=0.031 Sum_probs=99.8 Q ss_pred cEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEe Q FBpp0305286 177 TSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVH 255 (559) Q Consensus 177 ~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ld 255 (559) +.+++++|+|+.+|.. -.++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+.+..+.. +..+++|+.|+ T Consensus 14 ~~l~c~~~~l~~ip~~-----~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~ 86 (220) T 2v9t_B 14 NIVDCRGKGLTEIPTN-----LPETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLV 86 (220) T ss_dssp TEEECTTSCCSSCCSS-----CCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEE T ss_pred CEEEeCCCCcCccCcc-----cCCCCCEEEcCCCcCcccCH-HHhhCCCCCCEEECCCCcCCccCHHH-hCCCccCCEEE Confidence 4577777777776653 12567777777777776653 356666 7777777777777765554 66777777777 Q ss_pred CCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecC-CcCccccc Q FBpp0305286 256 GCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYG 330 (559) Q Consensus 256 l~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~ 330 (559) +++|.+. +...+..+++|+.| ++++|.++.+.. .+. .+++|+.|++ .|.+.+++.. +..++.|+ T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L--------~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220) T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLL--------LLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220) T ss_dssp CCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCC T ss_pred CCCCcCCcCCHhHcCCCccccee--------ecCCCCcCEECHHHhc---CCCCCCEEECCCCcCCeeCHHHhccccCCC Confidence 7777543 23345667777777 444444444322 222 4677777777 6666665543 35678899 Q ss_pred eeecCCccccCCChhhhh Q FBpp0305286 331 YKLYNRNQKRQHSSFAQN 348 (559) Q Consensus 331 ~L~ls~N~i~~~~~~~rl 348 (559) +|++++|++.+.+....+ T Consensus 156 ~L~L~~N~~~c~c~l~~l 173 (220) T 2v9t_B 156 TMHLAQNPFICDCHLKWL 173 (220) T ss_dssp EEECCSSCEECSGGGHHH T ss_pred EEEeCCCCccccCCcHHH Confidence 999999999887665544No 108>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Probab=99.46 E-value=3e-13 Score=148.42 Aligned_cols=180 Identities=14% Similarity=0.050 Sum_probs=130.9 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHh---hccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLS---NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGEL 218 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i---~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l 218 (559) .+++|+.|.+.+|.+... .... .+.+++|++|+|++|+|+.++..+..+..+++|+.|+|++|+|+.++. T Consensus 332 ~l~~L~~L~Ls~N~l~~~------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~p~- 404 (549) T 2z81_A 332 HLKSLEFLDLSENLMVEE------YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD- 404 (549) T ss_dssp HCTTCCEEECCSSCCCHH------HHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS- T ss_pred hcccCCEEECCCCccccc------cccchhhhhcccccCEEEecCCcceeccccccccccCCCCCeEEcCCCcccCCcc- Confidence 356777777777776522 1111 137888999999999988765443345788899999999999988874 Q ss_pred CccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhccc Q FBpp0305286 219 NYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 219 ~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) .+..+ +|++|+|++|.+...+.. ..++|+.|++++|.+...+ ..+++|+.| ++++|.++.++.. T Consensus 405 -~~~~l~~L~~L~ls~N~l~~~~~~----~~~~L~~L~Ls~N~l~~i~--~~l~~L~~L--------~Ls~N~l~~ip~~ 469 (549) T 2z81_A 405 -SCQWPEKMRFLNLSSTGIRVVKTC----IPQTLEVLDVSNNNLDSFS--LFLPRLQEL--------YISRNKLKTLPDA 469 (549) T ss_dssp -CCCCCTTCCEEECTTSCCSCCCTT----SCTTCSEEECCSSCCSCCC--CCCTTCCEE--------ECCSSCCSSCCCG T ss_pred -ccccccceeEEECCCCCccccccc----ccCceeEEECCCCCccccc--cccchhhee--------ecCCCCeeeCCcc Confidence 47777 899999999998865532 2378999999998765432 356889999 5666666655544 Q ss_pred ccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCChhhh Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFAQ 347 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~r 347 (559) . .+++|+.|++ +|.+..+... ...++.|++|++++|++.+.+.... T Consensus 470 ~----~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~c~c~~~~ 517 (549) T 2z81_A 470 S----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549) T ss_dssp G----GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH T ss_pred c----cCCCccEEEcCCCccCccCHhHhhccchhhhhhhcCCCeecccccHH Confidence 1 5789999999 7777765433 3667899999999999998766543No 109>4y61_B SLIT and NTRK-like protein 2, receptor-type tyrosine-protein phosphatase delta; trans-synaptic complex, hydrolase-signaling protein complex; HET: NAG; 3.36A {Mus musculus} Probab=99.45 E-value=3.4e-13 Score=135.48 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=127.7 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) .++++++++++.++.++.. +..+++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.+.+..+.. +..+++|+ T Consensus 39 ~~~~~l~~~~~~l~~lp~~---~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~ 113 (272) T 4y61_B 39 ENVLNINCENKGFTTVSLL---QPPQYRIYQLFLNGNLLTRLYP-NEFVNYSNAVTLHLGNNGLQEIRPGA-FSGLKTLK 113 (272) T ss_dssp SSSEEEECTTSCCSCSSSC---CCCSSSCEEEECTTCCCSEECT-TCCCSCTTEEEEECTTSCCCEECSSC-CCSCTTCC T ss_pred CCceEEEcCCCCCccCCCC---CCCcCcceEEECCCCcCCccCH-HHhhCCCCCCEEECCCCcCCeeCHhH-ccCCCCCC Confidence 4678999999999999875 4677899999999999998863 478899 9999999999999987666 89999999 Q ss_pred EEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCcccc Q FBpp0305286 253 NVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVY 329 (559) Q Consensus 253 ~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L 329 (559) +|++++|.+. ....+..+++|+.| ++++|.++.+...... .+++|+.|++ +|.+.+++.....++.| T Consensus 114 ~L~Ls~n~l~~~~~~~~~~l~~L~~L--------~L~~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~L 183 (272) T 4y61_B 114 RLHLNNNKLEVLREDTFLGLESLEYL--------QADYNYISTIEAGAFS--KLNKLKVLILNDNLLLSLPSNVFRFVLL 183 (272) T ss_dssp EEECCSSCCCEECTTTTCSCSSCCEE--------ECTTSCCCEECGGGGT--TCTTCCEEECCSSCCSCCCTTSSSSCCC T ss_pred EEECCCCcCCeeCHHHhcCCCCCCEE--------ECCCCcCCcCCHhHcc--CcccCCEEECCCCccCccChhhcCcCCC Confidence 9999999764 34568899999999 5555555555332222 6899999999 88888777666778999 Q ss_pred ceeecCCccccCCC Q FBpp0305286 330 GYKLYNRNQKRQHS 343 (559) Q Consensus 330 ~~L~ls~N~i~~~~ 343 (559) ++|++++|.++... T Consensus 184 ~~L~L~~N~l~~~~ 197 (272) T 4y61_B 184 THLDLRGNRLKVMP 197 (272) T ss_dssp SEEECTTSCCSCCC T ss_pred CEEECCCCCCcccC Confidence 99999999998544No 110>4l3f_A Internalin K, LMO1290 protein; leucine rich repeat, immune system evasion, major vault PROT invasion; 2.39A {Listeria monocytogenes} Probab=99.45 E-value=5.4e-14 Score=146.65 Aligned_cols=178 Identities=12% Similarity=0.113 Sum_probs=140.9 Q ss_pred cccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC-C Q FBpp0305286 137 TLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD-L 215 (559) Q Consensus 137 ~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~-l 215 (559) .+.++++.+++.|.+.+|.+..+ + .+..+++|++|+|++|.++.++.+ ..+++|+.|+|++|+++. . T Consensus 50 ~i~~~~l~~L~~L~l~~n~l~~l---~-----~l~~l~~L~~L~L~~n~~~~~~~l----~~l~~L~~L~L~~n~l~~~~ 117 (347) T 4l3f_A 50 NITEAQMDSLTYITLANINVTDL---T-----GIEYAHNIKDLTINNIHATNYNQI----SGLSNLERLRIMGADVTSDK 117 (347) T ss_dssp CCCHHHHHHCCEEEEESCCCSCC---T-----TGGGCTTCSEEEEESCCCSCCGGG----TTCTTCCEEEEEEEEEEGGG T ss_pred CcCHHHCCCCCEEEeeCCCCCCC---h-----hHhcCCCCCEEEccCCCCCCchHH----cCCCCCCEEEeeCCccCCcc Confidence 34456788899999988877643 1 236789999999999988877643 889999999999999996 4 Q ss_pred CccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCc-CCCchhccCCCCcccccCCCCCCccchhhhhhh Q FBpp0305286 216 GELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQL-GESTEAVDNIPKSQQLQGGGTNGLKFCQDFISS 293 (559) Q Consensus 216 ~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~-~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~ 293 (559) +. .+.++ +|++|+|++|.+.+..+.. +..+++|+.|++++|. ....+.+..+++|+.|++ ++|.++. T Consensus 118 ~~--~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~N~~~~~i~~l~~l~~L~~L~L--------~~n~l~~ 186 (347) T 4l3f_A 118 IP--NLSGLTNLTLLDLSHSAHDDSILTK-INTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNI--------QFDGVHD 186 (347) T ss_dssp SC--CCTTCTTCCEEECCSEECBGGGGGG-TTTCSSCCEEECTTCTBCCCCGGGGGCSSCCEEEC--------TTSCCCB T ss_pred ch--hhhcCCCCCEEEccCCcCCchhhhH-hhCCCCCCEEECCCCCCccchhhhccCCCCCEEEe--------eCCCCCC Confidence 43 68889 9999999999999876666 8899999999999996 655667889999999944 4444444 Q ss_pred hcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCC Q FBpp0305286 294 YYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 294 ~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) ... +. .+++|+.|++ .|.+.... +...+..|+.|++++|.++.. T Consensus 187 ~~~-l~---~l~~L~~L~L~~N~l~~~~-~~~~~~~L~~L~l~~n~l~~~ 231 (347) T 4l3f_A 187 YRG-IE---DFPKLNTLLAYSQTIGGKK-LINSDIKSSKLTYNAENQTLY 231 (347) T ss_dssp CTT-GG---GSSSCCEEECTTCEETSSS-CCEEEECGGGSEEETTTTEEE T ss_pred chh-hh---cCCCCCEEEeECCccCChh-hhhccccCCEEEccCCCcccc Confidence 432 22 6889999999 67666654 566778999999999998743No 111>4k5u_B Variable lymphocyte receptor; leucine rich repeat, antigen receptor, FUC-alpha(1-2)beta-GA system; HET: GAL; 1.70A {Petromyzon marinus} PDB: 4k79_A* Probab=99.44 E-value=7.5e-13 Score=128.69 Aligned_cols=155 Identities=17% Similarity=0.090 Sum_probs=87.0 Q ss_pred cEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEe Q FBpp0305286 177 TSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVH 255 (559) Q Consensus 177 ~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ld 255 (559) +.++.+++.++.+|.. -.++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+....... +..+++|+.|+ T Consensus 12 ~~v~c~~~~l~~ip~~-----~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 84 (220) T 4k5u_B 12 TEVNCAGKSLASVPAG-----IPTTTRVLYLNSNQITKLEP-GVFDRLANLRELHLWGNQLVSLPPGV-FDNLANLEKLW 84 (220) T ss_dssp TEEECTTSCCSSCCSC-----CCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECTTSCCCCCCTTT-TTTCTTCCEEE T ss_pred CEEEeCCCCcCcCCCC-----CCCCCcEEECCCCcCCeeCh-hhhhccCCCCEEECCCCcCCccCHhH-ccCCCCCCEEE Confidence 3455666666655542 12456666666666665542 345555 6666666666666555443 55566666666 Q ss_pred CCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccce Q FBpp0305286 256 GCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGY 331 (559) Q Consensus 256 l~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~ 331 (559) +++|.+.. ...+..+++|+.| ++++|.++.++..... .+++|+.|++ .|.+..++.. +..++.|++ T Consensus 85 L~~N~l~~l~~~~~~~l~~L~~L--------~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 154 (220) T 4k5u_B 85 LNSNQLTSLPAGLFDRLVNLEHL--------GLCCMKLTELPSGAFD--KLTRLKQLGLDQNQLKSIPDGAFARLPSLTH 154 (220) T ss_dssp CCSSCCSCCCTTTTTTCTTCCEE--------ECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE T ss_pred CCCCcCCeeCHhHcCCCcCCCEE--------ECCCCcCCccChhHhc--CCccCCEEECCCCcCCeECHHHHhCCCCCCE Confidence 66654432 2234555666666 3333333333332111 4666777777 6666655443 355678899 Q ss_pred eecCCccccCCC-hhhhh Q FBpp0305286 332 KLYNRNQKRQHS-SFAQN 348 (559) Q Consensus 332 L~ls~N~i~~~~-~~~rl 348 (559) |++++|++.+.+ .+..+ T Consensus 155 L~L~~N~~~c~c~~~~~l 172 (220) T 4k5u_B 155 VWLHTNPWDCQCTDILYL 172 (220) T ss_dssp EECCSSCBCTTBGGGHHH T ss_pred EEccCCCccCCCcccHHH Confidence 999999998876 44433No 112>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A Probab=99.44 E-value=6.9e-14 Score=124.45 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=98.7 Q ss_pred ccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhh Q FBpp0305286 284 LKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALS 363 (559) Q Consensus 284 ~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~ 363 (559) ..+...|+++|+..++. ++..|..+|.+++.+++.. ....|..+|...|. T Consensus 6 ~~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~s~~s~~~----------------------------~~~~G~~~I~~~l~ 55 (125) T 1gy7_A 6 NTLAQNFTQFYYNQFDT--DRSQLGNLYRNESMLTFET----------------------------SQLQGAKDIVEKLV 55 (125) T ss_dssp HHHHHHHHHHHHHHHHH--HGGGGGGGEEEEEEEEETT----------------------------EEEESHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHhC--CHHHHHHhcCCCcEEEECC----------------------------cEeeCHHHHHHHHH Confidence 36678899999999997 8999999999888888631 24578899999999 Q ss_pred cCC--CCCcCCCceeeeeEeecC-CEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCCCcEEEEccceEEee Q FBpp0305286 364 RLP--LMHTDLENVGLDIQVFTS-SLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNSPGWLITNDMLCITS 433 (559) Q Consensus 364 ~LP--~t~h~lssl~vD~~~~~~-~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~~ 433 (559) ++| .++|++++ +|+++..+ +.++|+|+|.|++.+. ...|+|+|+|+|+|.+ ++|+|.||++++.. T Consensus 56 ~lp~~~~~h~i~s--~D~q~~~~~~~i~i~V~G~~~~~~~--~~~~~F~qtFvL~p~~-~~~~I~nD~fr~~~ 123 (125) T 1gy7_A 56 SLPFQKVQHRITT--LDAQPASPYGDVLVMITGDLLIDEE--QNPQRFSQVFHLIPDG-NSYYVFNDIFRLNY 123 (125) T ss_dssp HSCCSCEEEEEEE--EEEEESSTTSCEEEEEEEEEEETTC--SSCEEEEEEEEEEEET-TEEEEEEEEEEEEC T ss_pred hCCccceEEEEee--EceEEcCCCCeEEEEEEEEEEECCC--CCCeEEEEEEEEEEcC-CEEEEEEEEEEEec Confidence 999 88999886 49999875 7899999999998753 3689999999999986 68999999999874No 113>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Probab=99.44 E-value=4.5e-13 Score=149.30 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=101.0 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++|+.|.+.+|.+..+ ....+..+++|++|+|++|.|+.+++. .+.++++|+.|+|++|.|+.++. ..| T Consensus 73 ~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-~~~ 143 (597) T 3oja_B 73 SFRQVELLNLNDLQIEEI------DTYAFAYAHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPR-GIF 143 (597) T ss_dssp HCCCCSEEECTTSCCCEE------CTTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTT T ss_pred cCCCCCEEECCCCcCCCc------CHHHhcCCCCccEEECCCCcCCCCCHH--HhcCCCCCCEEEecCCcCCCcCH-HHH Confidence 466777777777776632 112347889999999999999998754 35889999999999999998884 457 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCC Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l 283 (559) .++ +|++|+|++|.+.+..+.. +..+++|+.|++++|.+...+ +..+++|+.|.+++|.+ T Consensus 144 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~l~~n~l 204 (597) T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 204 (597) T ss_dssp TTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCC T ss_pred ccCCCcCEEeCcCCcCCCCChhh-hcCCCCCCEEECCCCCCCCCC-cccccccceeecccccc Confidence 888 9999999999999988766 889999999999999765432 34566666665555443No 114>4u09_A LIC12759, LIC12759; LRR protein, pathogen, virulence factor, unknown function; HET: MES; 1.95A {Leptospira interrogans serovar copenhafiocruz l1-130} Probab=99.44 E-value=5.4e-13 Score=140.48 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=92.7 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++|+.|.+.+|.+.... . ....+++|+.|++++|.+..++.. +..+++|+.|++++|+++.++. .+ T Consensus 155 ~l~~L~~L~l~~n~~~~~~---~----~~~~~~~L~~L~l~~n~l~~~~~~---l~~~~~L~~L~l~~n~l~~l~~--~l 222 (401) T 4u09_A 155 QLKSLKNLDLNHNEFTTVS---K----EVMLLETLENLDLRSNKLKTIPKE---IRQLKSLKVLMLTGNQLTSLPK--EI 222 (401) T ss_dssp GCTTCCEEECCSSCCSSCC---T----TGGGCTTCSEEECCSSCCCCCCGG---GGGCTTCCEEECCSSCCCCCCG--GG T ss_pred hCCCCCEEEccCCCCCCCc---h----hhhhhccCCEEECcCCchhhhchh---hcCCCCCCEEECCCCccccCCh--hH Confidence 4555666666666554221 1 113466677777777766665433 3566667777777766666553 45 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) ..+ +|++|++++|.+...+.. +..+++|+.|++++|..... ..+..+++|+.|+++ +|.+..++..+. T Consensus 223 ~~~~~L~~L~l~~n~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~--------~n~l~~~~~~~~ 292 (401) T 4u09_A 223 EQLQNLKTLNLGENRFQIFPVE--ILELKNLLELNLYYNQLVEFPKEVGQLKSLKYLSLY--------HNQITTLPVEVT 292 (401) T ss_dssp GGCTTCCEEECCSSCCSSCCGG--GGGCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC--------SSCCCCCCGGGG T ss_pred ccCCCCCEEECCCCccccCCHh--HhcCCCCCEEECCCCcCcccChhhhcCCCCCEEECC--------CCcCccccHhhc Confidence 555 666666666666644432 45566666666666644322 234556666666333 333333322221 Q ss_pred Ccccccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) .+++|+.|++ .|.+..++.....++.|++|++++|.+. T Consensus 293 ---~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~ 331 (401) T 4u09_A 293 ---QLPDLQELHLSGNKITILPKEILQLKNLEWLSLSNNKLN 331 (401) T ss_dssp ---GCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC T ss_pred ---CCCCCCEEECCCCcCccCChHHhcCCCCCEEECCCCccc Confidence 3555555555 4444433333344455555555555554No 115>4v2e_A FLRT3, fibronectin leucine rich transmembrane protein 3; signaling protein, leucine-rich repeat, LRR, UNC5; 2.50A {Mus musculus} Probab=99.44 E-value=2.4e-13 Score=139.73 Aligned_cols=149 Identities=12% Similarity=0.130 Sum_probs=72.6 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCC-ccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLG-ELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~-~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) ++|++|+|++|+++.++.. .+.++++|+.|+|++|++..++ ....+.++ +|++|++++|.+..++. ..+++| T Consensus 76 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ls~n~l~~l~~----~~~~~L 149 (331) T 4v2e_A 76 KYVKELHLQENNIRTITYD--SLSKIPYLEELHLDDNSVSAVSIEEGAFRDSNYLRLLFLSRNHLSTIPG----GLPRTI 149 (331) T ss_dssp SBCSEEECCSSCCCBBCHH--HHHTCSBCSEEECTTCCCCTTTBCTTCTTSCTTCCEEECCSSCCSSCCS----CCCTTC T ss_pred ccCCEeECCCCCcCccCHh--HhcCCcccCEeECCCCcccccccChhhccCCCCCCEEECCCCCCCcCCc----chhccC Confidence 4555555555555554421 1345556666666666555421 11244555 56666666665554442 223556 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhh--h-cccccCcccccccccccc-ccceeeeecCCcC Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISS--Y-YTFFDDTEERFKLKKYYD-DQAMFSLSVPVQL 325 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~--~-~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~ 325 (559) +.|++++|.+.. ...+..+++|+.| ++++|.+.. . +..+. ++++|+.|++ .|.+..++... . T Consensus 150 ~~L~l~~n~l~~~~~~~l~~l~~L~~L--------~L~~n~~~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~-~ 217 (331) T 4v2e_A 150 EELRLDDNRISTISSPSLHGLTSLKRL--------VLDGNLLNNHGLGDKVFF---NLVNLTELSLVRNSLTAAPVNL-P 217 (331) T ss_dssp CEEECCSCCCCCCCGGGTTTCTTCCEE--------ECCSCCCCTTTSCSSSST---TCTTCCEEECCSCCCCBCCSSC-C T ss_pred CEEECCCCcCCEeCHHHcCCCCCCCEE--------ECCCCcCcccccCHHHHh---CCCCCCEEECCCCccccCcCcC-c Confidence 666666554332 2345556666666 333333321 1 11221 4566666666 55444443222 2 Q ss_pred ccccceeecCCcccc Q FBpp0305286 326 NYVYGYKLYNRNQKR 340 (559) Q Consensus 326 ~~~L~~L~ls~N~i~ 340 (559) .+.|++|++++|.+. T Consensus 218 ~~~L~~L~L~~n~l~ 232 (331) T 4v2e_A 218 GTSLRKLYLQDNHIN 232 (331) T ss_dssp CSSCCEEECTTCCCC T ss_pred cCCCCEEECCCCcCC Confidence 255666666666554No 116>4kt1_A Leucine-rich repeat-containing G-protein coupled 4; LGR receptor, complex structure, WNT signaling, H receptor-cell adhesion complex; HET: NAG; 2.50A {Homo sapiens} PDB: 4li1_B* 4li2_A Probab=99.44 E-value=3.3e-13 Score=147.12 Aligned_cols=187 Identities=18% Similarity=0.126 Sum_probs=143.3 Q ss_pred ccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-C Q FBpp0305286 147 PELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-S 225 (559) Q Consensus 147 ~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~ 225 (559) +.|.+.+|.+..+ ....+.++++|++|+|++|.++.+.+. .+.++++|+.|+|++|+++.++. ..+.++ + T Consensus 35 ~~L~Ls~n~i~~i------~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 105 (504) T 4kt1_A 35 QALDISMNNITQL------PEDAFKNFPFLEELQLAGNDLSFIHPK--ALSGLKELKVLTLQNNQLKTVPS-EAIRGLSA 105 (504) T ss_dssp CEEECCSSCCCEE------CTTTTTTCTTCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCBCCT-TTTTTCTT T ss_pred cEEECCCCCCCcc------CHHHhcCCCCCCEEECCCCcCCccCHH--HhccCCCCCEEECcCCCCCccCH-HHhCCCCC Confidence 4566667766532 223457899999999999999987443 35899999999999999998883 468899 9 Q ss_pred ccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCccc Q FBpp0305286 226 CKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEE 303 (559) Q Consensus 226 L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~ 303 (559) |++|+|++|.+.+..+.. +..+++|++|++++|.+.. ...+..+++|+.| ++..|.+..++..... + T Consensus 106 L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--------~l~~n~l~~i~~~~~~--~ 174 (504) T 4kt1_A 106 LQSLRLDANHITSVPEDS-FEGLVQLRHLWLDDNSLTEVPVHPLSNLPTLQAL--------TLALNKISSIPDFAFT--N 174 (504) T ss_dssp CCEEECCSSCCCBCCTTT-TTTCTTCCEEECCSSCCCSCCHHHHTTCTTCCEE--------ECCSSCCCEECTTTTT--T T ss_pred CCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCCCceeChhHhccCCCCCEE--------ECCCCccCccCHhHcC--C Confidence 999999999999988776 8999999999999996643 3458899999999 5555555555542222 6 Q ss_pred ccccccccc-ccceeeeecC-CcCccccceeecCCccccCC-Chhhhhhhhhh Q FBpp0305286 304 RFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQH-SSFAQNAKLQV 353 (559) Q Consensus 304 l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~-~~~~rl~~L~~ 353 (559) +++|+.|++ .|.+..+... +..++.|++|++++|.+... ..+..+..|.. T Consensus 175 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~ 227 (504) T 4kt1_A 175 LSSLVVLHLHNNKIRSLSQHCFDGLDNLETLDLNYNNLGEFPQAIKALPSLKE 227 (504) T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGGGCTTCCE T ss_pred CCcCCEEECCCCcCCccChhhhcCCCCCCEEECCCCcchhhhHHHhcCCCccE Confidence 899999999 7777776544 46788999999999998653 34444444443No 117>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Probab=99.44 E-value=7.2e-14 Score=162.10 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=95.2 Q ss_pred CCceeEEEEcCCCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccC Q FBpp0305286 94 TCQKIEVRVTPGLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLF 173 (559) Q Consensus 94 ~~~~i~l~v~p~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l 173 (559) +|....+...|.+|+..+.++++.+.++.+ ..-.++++.+|+.|.+.+|.... ......+.++ T Consensus 10 ~c~~~~l~~vp~lp~~l~~L~Ls~n~i~~~------------~~~~~~~l~~L~~L~Ls~n~~~~-----~i~~~~~~~l 72 (844) T 3j0a_A 10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTV------------TASSFPFLEQLQLLELGSQYTPL-----TIDKEAFRNL 72 (844) T ss_dssp EESCCCSSCCCSSCTTCCEEEEESCCCCEE------------CSSSCSSCCSCSEEEECTTCCCC-----EECTTTTSSC T ss_pred EecCCCCCCCCCCCCCcCEEECcCCccCCc------------ChhHCcCcccCeEEECCCCCccc-----eeCHHHhcCC Confidence 566666677777888888888888877332 22345666777777776663210 0111233677 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC-CCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD-LGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~-l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) ++|++|+|++|+|+.+.+. .+.++++|+.|+|++|.++. ++....+.++ +|++|+|++|.+.+..+...++.+++| T Consensus 73 ~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 150 (844) T 3j0a_A 73 PNLRILDLGSSKIYFLHPD--AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844) T ss_dssp TTCCEEECTTCCCCEECTT--SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC T ss_pred CCCCEEECCCCCCcccChh--hccCCcccCeecCcCCCCCcccccCccccCCCCCCEEECCCCCCccccccHHHhhCCCC Confidence 7777777777777776332 24677777777777777774 3332246677 777777777777776542226777777 Q ss_pred cEEeCCCCcC Q FBpp0305286 252 KNVHGCVQLG 261 (559) Q Consensus 252 ~~Ldl~~N~~ 261 (559) +.|++++|.+ T Consensus 151 ~~L~L~~n~l 160 (844) T 3j0a_A 151 KSIDFSSNQI 160 (844) T ss_dssp CEEEEESSCC T ss_pred CEEECCCCcc Confidence 7777777643No 118>4l3a_A Internalin K, LMO1290 protein; leucine rich repeat, immune system evasion, major vault PROT invasion; 2.59A {Listeria monocytogenes} Probab=99.44 E-value=4.8e-14 Score=157.46 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=76.6 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ 250 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~ 250 (559) .+++|+.|+|++|+|..++.+ ..+++|+.|+|++|+|+... .+..+ +|++|+|++|.+.+..+.. +..+++ T Consensus 77 ~l~~L~~L~Ls~n~i~~l~~l----~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~ 148 (590) T 4l3a_A 77 QMDSLTYITLANINVTDLTGI----EYAHNIKDLTINNIHATNYN---QISGLSNLERLRIMGADVTSDKIPN-LSGLTN 148 (590) T ss_dssp HHTTCCEEEEESSCCCCCTTG----GGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTT T ss_pred HcCCCCEEEccCCCCCCChhH----hhCCCCCEEEeeCCcCCCch---HHccCCCCCEEEecCCcCCCcChhh-hcCCCC Confidence 345556666666665555442 45556666666666555521 34555 5666666666555533333 455556 Q ss_pred ccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhh-hhhhhcccccCcccccccccccc-ccceeeeecCCcCc Q FBpp0305286 251 LKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQD-FISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLN 326 (559) Q Consensus 251 L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n-~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~ 326 (559) |+.|++++|.+.. ...+..+++|+.| ++++| .+..++. +. .+++|+.|++ .|.+..+. +...+ T Consensus 149 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L--------~Ls~N~~l~~l~~-l~---~l~~L~~L~L~~n~l~~~~-~l~~l 215 (590) T 4l3a_A 149 LTLLDLSHSAHDDSILTKINTLPKVTSI--------DLSYNGAITDIMP-LK---TMPELKSLNIQFDGVHDYR-GIEDF 215 (590) T ss_dssp CCEEECCSSBCCGGGGGGTTTCSSCCEE--------ECTTCTTCCCCGG-GG---GCSSCCEEECTTCCCCBCT-TGGGC T ss_pred CCEEECcCCcCCchhhhhhhcCCCccEE--------ECcCCCCcccchh-hc---cCCCccEEECcCCCCCCch-hhccC Confidence 6666666554432 3344555556665 33333 3333333 11 3555555655 44444433 33445 Q ss_pred cccceeecCCccccC Q FBpp0305286 327 YVYGYKLYNRNQKRQ 341 (559) Q Consensus 327 ~~L~~L~ls~N~i~~ 341 (559) +.|+.|++++|.+.. T Consensus 216 ~~L~~L~L~~N~l~~ 230 (590) T 4l3a_A 216 PKLNTLLAYSQTIGG 230 (590) T ss_dssp SSCCEEECTTCEETS T ss_pred CCCCEEEeECCcccC Confidence 555556666555554No 119>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 3ulu_A* 3ulv_A* 2a0z_A* 3cig_A* 3ciy_A* Probab=99.44 E-value=1.5e-13 Score=155.26 Aligned_cols=184 Identities=14% Similarity=0.036 Sum_probs=134.9 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCc-cC Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGE-LN 219 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~-l~ 219 (559) ..+.+|+.|.+.+|.+... + ....+..+++|++|+|++|++..+.+. .+..+++|+.|+|++|.++.+.. .. T Consensus 402 ~~l~~L~~L~Ls~N~l~~~--~---~~~~~~~l~~L~~L~ls~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~p~ 474 (680) T 1ziw_A 402 SWLGHLEVLDLGLNEIGQE--L---TGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRVALKNVDSSPS 474 (680) T ss_dssp TTCTTCCEEECCSSCCEEE--C---CSGGGTTCTTCCEEECCSCSEEECCTT--TTTTCTTCCEEECTTSCCBCTTCSSC T ss_pred cCcCCCCEEECCCCccccc--c---ChhhccCccCCCEEECCCCccceeChh--hhhcCCCCcEEECCCCcccccccCcc Confidence 3567788888888876521 1 112347889999999999998877554 34788999999999999864321 12 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC----------chhccCCCCcccccCCCCCCccchh Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES----------TEAVDNIPKSQQLQGGGTNGLKFCQ 288 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~----------~~~~~~lp~Lk~L~l~~~~l~~L~~ 288 (559) .+..+ +|++|+|++|.+.+.++.. +..+++|+.|++++|.+.. ...+..+++|+.| ++++ T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~~~~~~~~~~l~~L~~L--------~Ls~ 545 (680) T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL--------NLES 545 (680) T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE--------ECCS T ss_pred cccCCCCCCEEECCCCCCCccChhh-hccccCCCEEECCCCcccccccccccccchhhhcCCCCcCEE--------ECCC Confidence 67788 8999999999999887765 8889999999999986532 1236678889999 6666 Q ss_pred hhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCC Q FBpp0305286 289 DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 289 n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~ 342 (559) |.++.++..... ++++|+.|++ +|.+..++.. +..++.|++|++++|.++.. T Consensus 546 N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680) T 1ziw_A 546 NGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599 (680) T ss_dssp SCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC T ss_pred CCCCcCCHhHcC--CcccCCEeECCCCCCCccCHHHhcCCccCCEEeCCCCCCeee Confidence 666666653222 6889999999 7777765543 35678899999999988754No 120>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Probab=99.44 E-value=2.7e-13 Score=130.13 Aligned_cols=147 Identities=24% Similarity=0.163 Sum_probs=80.1 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+|+.++.. .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+.+..... +..+++|+ T Consensus 28 ~~l~~L~l~~n~i~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 103 (208) T 2o6s_A 28 AQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLK 103 (208) T ss_dssp TTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC T ss_pred CCCeEEEeCCCcccccCHH--HhCCCccCcEEECCCCcCCccCH-hHccCCCCcCEEECCCCcCCeeCHHH-hhCccccC Confidence 4566666666666665543 23566666666666666666552 345566 6666666666666655543 56666666 Q ss_pred EEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCcccc Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVY 329 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L 329 (559) .|++++|.+.. ...+..+++|+.| ++++|.++.++..... .+++|+.|++ +|.+. ..++.+ T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~~~~~--~l~~L~~L~l~~N~~~------~~~~~L 167 (208) T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDL--------RLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPWD------CTCPGI 167 (208) T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCSCCCTTTTT--TCTTCCEEECCSCCBC------CCTTTT T ss_pred EEECCCCccCccCHHHhcCCCCCCEE--------ECCCCcCcccCHHHhh--cCccCCEEEeeCCCcc------CCCcCH Confidence 66666664432 2234556666666 3333434333322111 3555666666 33322 123445 Q ss_pred ceeecCCcccc Q FBpp0305286 330 GYKLYNRNQKR 340 (559) Q Consensus 330 ~~L~ls~N~i~ 340 (559) ++|+++.|.+. T Consensus 168 ~~L~l~~n~~~ 178 (208) T 2o6s_A 168 RYLSEWINKHS 178 (208) T ss_dssp HHHHHHHHHCT T ss_pred HHHHHHHHhCC Confidence 55555555443No 121>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A Probab=99.44 E-value=6.5e-14 Score=124.96 Aligned_cols=115 Identities=28% Similarity=0.442 Sum_probs=99.3 Q ss_pred ccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhh Q FBpp0305286 284 LKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALS 363 (559) Q Consensus 284 ~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~ 363 (559) ..+...|+++|+..++. ++..|..+|.+++.+++. + ....|..+|...|. T Consensus 8 ~~v~~~Fv~~YY~~~d~--~r~~L~~~Y~~~s~~s~~---------------g-------------~~~~G~~~I~~~l~ 57 (127) T 1gy6_A 8 EQIGSSFIQHYYQLFDN--DRTQLGAIYIDASCLTWE---------------G-------------QQFQGKAAIVEKLS 57 (127) T ss_dssp HHHHHHHHHHHHHHHHH--HGGGGGGGEEEEEEEEET---------------T-------------EEEESHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHhc--CHHHHHHhhCCCCEEEEC---------------C-------------ceeecHHHHHHHHH Confidence 46778899999999997 899999999988888763 0 24689999999999 Q ss_pred cCC--CCCcCCCceeeeeEeecCCEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCCCcEEEEccceEEeeC Q FBpp0305286 364 RLP--LMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNSPGWLITNDMLCITST 434 (559) Q Consensus 364 ~LP--~t~h~lssl~vD~~~~~~~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~~~ 434 (559) ++| +++|++++ +|+++..++.++|+|+|.|++.+. ..|+|+|+|+|+|++ ++|+|.||++++... T Consensus 58 ~lp~~~~~h~i~s--~D~q~~~~~~i~i~V~G~~~~~~~---~~~~F~qtFvL~p~~-~~~~I~nD~fr~~~~ 124 (127) T 1gy6_A 58 SLPFQKIQHSITA--QDHQPTPDSCIISMVVGQLKADED---PIMGFHQMFLLKNIN-DAWVCTNDMFRLALH 124 (127) T ss_dssp HCSCSCEEEEEEE--EEEEECTTSCEEEEEEEEEEETTS---CCEEEEEEEEEEEET-TEEEEEEEEEEECCC T ss_pred hCCccceEEEEEe--EeeEEcCCCeEEEEEEEEEEECCC---CceEEEEEEEEEEcC-CEEEEEeEEEEEEcc Confidence 999 55899875 699999888899999999998764 799999999999986 689999999999754No 122>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} SCOP: d.17.4.0 Probab=99.44 E-value=8.4e-14 Score=128.19 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=95.6 Q ss_pred cchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhhc Q FBpp0305286 285 KFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSR 364 (559) Q Consensus 285 ~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~~ 364 (559) .+...|+++||..|+. ++..|..+|.+++.+++. . ....|..+|...|.+ T Consensus 35 ~i~~~Fv~~YY~~~D~--~R~~L~~~Y~~~S~~s~~---------------g-------------~~~~G~~~I~~~l~~ 84 (154) T 3nv0_B 35 NESKKFMDVYYDVMDR--KREKIGFLYTQVSNAVWN---------------G-------------NPINGYDSICEFMKA 84 (154) T ss_dssp HHHHHHHHHHHHHHHH--CGGGGGGGEEEEEEEEET---------------T-------------EEEESHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHhhCCCCEEEEC---------------C-------------ccccCHHHHHHHHHh Confidence 5788899999999997 899999999988888752 1 235789999999999 Q ss_pred CCCCCcCCCceeeeeEeec-------CCEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCCCcEEEEccceEEe Q FBpp0305286 365 LPLMHTDLENVGLDIQVFT-------SSLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNSPGWLITNDMLCIT 432 (559) Q Consensus 365 LP~t~h~lssl~vD~~~~~-------~~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n~~~~I~ND~l~i~ 432 (559) ||.++|+++++ |+++.. ++.++|+|+|.|++.+. +.|+|+|+|+|+|.+ ++|+|.||+|++. T Consensus 85 LP~t~h~i~s~--D~q~~~~~~~~q~~~~ili~V~G~~~~~~~---~~r~F~qtFvL~p~~-~~~~I~ND~fRl~ 153 (154) T 3nv0_B 85 LPSTQHDIQSL--DAQRLPEGVTGDMSGGMLLNVAGAVTVDGD---SKRAFTQTLLLGVED-GKYKVKSDRFRYV 153 (154) T ss_dssp SCCEEEEEEEE--EEEECCTTCCGGGTTCEEEEEEEEEEETTS---CCEEEEEEEEEEEET-TEEEEEEEEEEEC T ss_pred CCCeEEEEEEE--eEEEccccccCCCCCeEEEEEEEEEEECCC---CCceeeEEEEEEEeC-CEEEEEEeEEEec Confidence 99999998865 666665 45789999999998764 589999999999986 6899999999975No 123>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Probab=99.44 E-value=4.9e-13 Score=137.14 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=133.7 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+... ....+.++++|++|+|++|+++.+.+. .+..+++|+.|+|++|+++.++.. +. T Consensus 52 ~~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~l~~~--~~- 120 (330) T 1xku_A 52 PDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNKISKISPG--AFAPLVKLERLYLSKNQLKELPEK--MP- 120 (330) T ss_dssp TTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCSBCCSS--CC- T ss_pred CCceEEECCCCcCCcc------ChhhhhCCCCCCEEECCCCccCccCHH--HhcCCCCCCEEECCCCccccCChh--hc- Confidence 5677777777776632 112347899999999999999987432 258899999999999999988741 11 Q ss_pred CCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcC----CCchhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 224 LSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLG----ESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 224 l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~----~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) .+|++|++++|.+....... +..+++|+.|+++.|.. .....+..+++|+.| ++++|.+..++.. T Consensus 121 ~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L--------~l~~n~l~~~~~~-- 189 (330) T 1xku_A 121 KTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI--------RIADTNITTIPQG-- 189 (330) T ss_dssp TTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE--------ECCSSCCCSCCSS-- T ss_pred ccccEEECCCCcCcccCHhH-hCCCCcccEEECCCCcCcccccCHHHhcCCCCCCEe--------ECCCCCCCccCcc-- Confidence 38999999999999988776 88999999999999965 344567889999999 5555555554432 Q ss_pred Ccccccccccccc-ccceeeeec-CCcCccccceeecCCccccC Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSV-PVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~-~~~~~~~L~~L~ls~N~i~~ 341 (559) -.++|+.|++ .|.+..+.. ....++.|++|++++|.+.. T Consensus 190 ---~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 230 (330) T 1xku_A 190 ---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330) T ss_dssp ---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE T ss_pred ---ccCcCcEEECCCCCCCcCCHHHhcCCCCcCEEECCCCcCCc Confidence 2478999999 777777633 34678899999999999875No 124>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Probab=99.43 E-value=3.7e-13 Score=138.06 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=112.6 Q ss_pred CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC Q FBpp0305286 105 GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN 184 (559) Q Consensus 105 ~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N 184 (559) .+++..+.++++.+.+..+ ..-.+.++.+|+.|.+.+|.+... ....+..+++|++|+|++| T Consensus 51 ~~~~~L~~L~l~~~~l~~~------------~~~~~~~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~l~~n 112 (332) T 2ft3_A 51 EISPDTTLLDLQNNDISEL------------RKDDFKGLQHLYALVLVNNKISKI------HEKAFSPLRKLQKLYISKN 112 (332) T ss_dssp CCCTTCCEEECCSSCCCEE------------CTTTTTTCTTCCEEECCSSCCCEE------CGGGSTTCTTCCEEECCSS T ss_pred ccCCCceEEECCCCccCcc------------CHHHhcCCCCCCEEECCCCcCCCc------CHHHhcCCCCcCEeECCCC Confidence 3445555566666554221 122345677777777777766532 1123367788888888888 Q ss_pred cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCC--cchhHHhccCCCccEEeCCCCcC Q FBpp0305286 185 YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAK--LSVDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 185 ~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~--~~~~~il~~lp~L~~Ldl~~N~~ 261 (559) +++.++.. ..++|+.|+|++|.++.++. ..+..+ +|++|++++|.+.. ..... +.. .+|+.|++++|.+ T Consensus 113 ~l~~~~~~-----~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~-~~L~~L~l~~n~l 184 (332) T 2ft3_A 113 HLVEIPPN-----LPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGA-FDG-LKLNYLRISEAKL 184 (332) T ss_dssp CCCSCCSS-----CCTTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTS-SCS-CCCSCCBCCSSBC T ss_pred CCCccChh-----hcCchhEEECCCCCcccCCH-hHhhcccccCEEECCCCcccccccCccc-ccc-ceeeEEECcCCcc Confidence 88877654 12778888888888877663 356777 78888888887754 22221 222 2666666666654 Q ss_pred CCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccc Q FBpp0305286 262 ESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQK 339 (559) Q Consensus 262 ~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i 339 (559) ...... ..++|+.| ++++|.+......... ++++|+.|++ .|.+..+... ...++.|++|++++|.+ T Consensus 185 ~~~~~~-~~~~L~~L--------~l~~n~l~~~~~~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 253 (332) T 2ft3_A 185 TGIPKD-LPETLNEL--------HLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253 (332) T ss_dssp SSCCSS-SCSSCSCC--------BCCSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC T ss_pred CcCChh-hhhhCcEE--------ECcCCccCccCHhHhc--cCCCcCEEECCCCcCCeeCHHHhccCCCcCEEECCCCcC Confidence 332211 11456666 3333333333211111 4566666666 5555444332 24456666666666666 Q ss_pred c Q FBpp0305286 340 R 340 (559) Q Consensus 340 ~ 340 (559) . T Consensus 254 ~ 254 (332) T 2ft3_A 254 S 254 (332) T ss_dssp C T ss_pred e Confidence 5No 125>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Probab=99.43 E-value=3.3e-13 Score=137.29 Aligned_cols=182 Identities=12% Similarity=0.001 Sum_probs=123.8 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC----CC Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD----LG 216 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~----l~ 216 (559) ..+.+|+.|.+.+|.+.........+ ....+++|++|+|++|+++.++.. .+..+++|+.|+|++|++.. .. T Consensus 114 ~~l~~L~~L~L~~n~i~~~~~~~~~l--~~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~ 189 (310) T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAEL--QQWLKPGLKVLSIAQAHSPAFSCE--QVRAFPALTSLDLSDNPGLGERGLMA 189 (310) T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHH--HTTBCSCCCEEEEECCSSCCCCTT--SCCCCTTCCEEECCSCTTCHHHHHHT T ss_pred cCCCCCCEEECcCCCCcchhhHHHHh--hhccCCCCcEEECCCCcCchhHHH--HHhcCCCCCEEECCCCCCCcchhHHH Confidence 45667778888777766431111111 112458899999999998876643 34788999999999998875 33 Q ss_pred ccCccCCC-CccEEEeecCcCCCcch--hHHhccCCCccEEeCCCCcCCC--chhccCC---CCcccccCCCCCCccchh Q FBpp0305286 217 ELNYINKL-SCKTIFLAGNGLAKLSV--DVIRKMLPQLKNVHGCVQLGES--TEAVDNI---PKSQQLQGGGTNGLKFCQ 288 (559) Q Consensus 217 ~l~~l~~l-~L~~L~L~~N~l~~~~~--~~il~~lp~L~~Ldl~~N~~~~--~~~~~~l---p~Lk~L~l~~~~l~~L~~ 288 (559) ...+..+ +|++|+|++|.+++... ..++..+++|+.|++++|.+.. +..+..+ ++|+.| ++++ T Consensus 190 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L--------~Ls~ 260 (310) T 4glp_A 190 -ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL--------NLSF 260 (310) T ss_dssp -TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE--------ECCS T ss_pred -HHHhccCCCccEEECCCCcCCChHHHHHHHHhcCCCCCEEECCCCCCCchhHHHHHHhhccCcCCEE--------ECcC Confidence 2246677 89999999998875322 2236778899999999886543 2334444 588888 5566 Q ss_pred hhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 289 DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 289 n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) |.+..++..+ .++|+.|++ .|.+..++. ...++.|++|++++|.++. T Consensus 261 n~l~~i~~~~-----~~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~l~~N~l~~ 308 (310) T 4glp_A 261 AGLEQVPKGL-----PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310) T ss_dssp SCCCSCCSCC-----CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC T ss_pred CCCchHHHHH-----hhhCCEEECcCCCCCCccc-cccCCcccEEECCCCCCCC Confidence 6666554432 468888999 777776633 3567888999999998763No 126>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Probab=99.43 E-value=3.5e-14 Score=144.55 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=16.5 Q ss_pred cccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 305 FKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 305 ~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) ++|+.|++ .|.+.. +|...++.|++|++++|.++ T Consensus 251 ~~L~~L~Ls~n~l~~--i~~~~~~~L~~L~L~~N~l~ 285 (310) T 4glp_A 251 SALNSLNLSFAGLEQ--VPKGLPAKLRVLDLSSNRLN 285 (310) T ss_dssp TTCCCEECCSSCCCS--CCSCCCSCCSCEECCSCCCC T ss_pred CcCCEEECcCCCCch--HHHHHhhhCCEEECcCCCCC Confidence 35555555 444442 23222455555555555554No 127>4cnm_A Trophoblast glycoprotein; cell adhesion, WAIF1, TPBG, trovax, MVA-5T4, cancer, signali leucine-rich repeats, WNT/beta-catenin signaling pathway; HET: NAG CIT; 1.75A {Homo sapiens} SCOP: c.10.2.0 PDB: 4cnc_A* Probab=99.43 E-value=1.2e-13 Score=140.00 Aligned_cols=186 Identities=15% Similarity=0.051 Sum_probs=114.1 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhcc---CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHL---FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~---l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) .+++.|.+.+|.+..+ ....+.. +++|++|+|++|+|+.+.+. .+.++++|+.|+|++|+|+.++. .. T Consensus 35 ~~L~~L~Ls~n~i~~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~ 105 (299) T 4cnm_A 35 AYVRNLFLTGNQLAVL------PAGAFARRPPLAELAALNLSGSRLDEVRAG--AFEHLPSLRQLDLSHNPLADLSP-FA 105 (299) T ss_dssp TTCSEEECCSCCCEEE------CTTTTCCSSCCTTCCEEECTTSCEEEECTT--TTTTCTTCCEEECCSCCCSEECT-TT T ss_pred cCCCEEECCCCcCccc------ChhhccCCcccccCCEeECCCCcCcccCcc--cccCCCCCCEeECCCCccCeeCh-hh Confidence 4566777777766532 1112233 67778888888877776433 24677788888888887776653 23 Q ss_pred cCC-------C-CccEEEeecCcCCCcch----------hH--HhccCCCccEEeCCCCcCCC--chhccCCCCcccccC Q FBpp0305286 221 INK-------L-SCKTIFLAGNGLAKLSV----------DV--IRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQG 278 (559) Q Consensus 221 l~~-------l-~L~~L~L~~N~l~~~~~----------~~--il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l 278 (559) |.+ . +|++|.+++|....... .. .+..+++|+.|++++|.+.. ...+..+++|+.| T Consensus 106 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-- 183 (299) T 4cnm_A 106 FSGSNASVSAPSPLVELILNHIVPPEDERQNRSFEGMVVAALLAGRALQGLRRLELASNHFLYLPRDVLAQLPSLRHL-- 183 (299) T ss_dssp TTCCC-----CCCCCEEECTTCCCTTGGGSSSCHHHHHHHHHHGGGTTTTCCEEECCSSCCCSCCHHHHHHCTTCCEE-- T ss_pred ccCcccccccchhHHHHhhccccCchhhhccccccccchhccccccccCCCCEEECCCCCccccCHHHhcCCCCCCEE-- Confidence 433 2 67777777665433210 10 02347888888888886543 3346778888888 Q ss_pred CCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccce--eecCCccccCCChhhhh Q FBpp0305286 279 GGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGY--KLYNRNQKRQHSSFAQN 348 (559) Q Consensus 279 ~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~--L~ls~N~i~~~~~~~rl 348 (559) ++++|.++.++..... ++++|+.|++ +|.+..++.. +..++.|+. +++++|++.|.+....+ T Consensus 184 ------~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~l~l~~Np~~c~c~l~~~ 249 (299) T 4cnm_A 184 ------DLSNNSLVSLTYVSFR--NLTHLESLHLEDNALKVLHNGTLAELQGLPHIRVFLDNNPWVCDCHMADM 249 (299) T ss_dssp ------ECCSSCCCCCTTCCCT--TCTTCCEEECTTSCCCCCCHHHHHHHTTCTTCEEECCSCCEECSGGGHHH T ss_pred ------ECCCCcccccCHhhcC--CCCCCCEEECCCCccCccCcchhhhccCCCeeEEEcCCCCccCCCCchHH Confidence 5555555554432222 5788888888 7777666432 234455555 77888888876655433No 128>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Probab=99.43 E-value=1.8e-13 Score=141.27 Aligned_cols=153 Identities=16% Similarity=0.083 Sum_probs=123.7 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..++.+++|+|++|.|+.++.. +..+++|+.|+|++|.++.++. .+..+ +|++|+|++|.+..++. . +..++ T Consensus 78 ~~~~~l~~L~L~~~~l~~l~~~---l~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~-~-l~~l~ 150 (328) T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQ---AFRLSHLQHMTIDAAGLMELPD--TMQQFAGLETLTLARNPLRALPA-S-IASLN 150 (328) T ss_dssp HTSTTCCEEEEESSCCSSCCSC---GGGGTTCSEEEEESSCCCCCCS--CGGGGTTCSEEEEESCCCCCCCG-G-GGGCT T ss_pred CCCCCeEEEEEeCCCCccCCHh---HcCCCCCCEEECCCCCccccCH--hHhcCCCCCEEEeeCCccCcCCH-H-HhcCC Confidence 4578999999999999998764 3679999999999999998875 68888 99999999999996644 3 89999 Q ss_pred CccEEeCCCCcCC--Cchhc---------cCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-cccee Q FBpp0305286 250 QLKNVHGCVQLGE--STEAV---------DNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMF 317 (559) Q Consensus 250 ~L~~Ldl~~N~~~--~~~~~---------~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~ 317 (559) +|++|++++|... .+..+ ..+++|+.| ++++|.++.++..+. .+++|+.|++ .|.+. T Consensus 151 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~l~~l~~L~~L--------~L~~n~l~~lp~~l~---~l~~L~~L~L~~n~l~ 219 (328) T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL--------RLEWTGIRSLPASIA---NLQNLKSLKIRNSPLS 219 (328) T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEE--------EEEEECCCCCCGGGG---GCTTCCEEEEESSCCC T ss_pred CCCEEeCCCCCCccccChhHhhcccchhhccCCCCCEE--------ECCCCCCeecchhhc---CCCCCCEEECcCCCcC Confidence 9999999997432 12222 268999999 777777776665543 6889999999 88888 Q ss_pred eeecCCcCccccceeecCCccccC Q FBpp0305286 318 SLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 318 sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) .++.....++.|++|++++|.+.. T Consensus 220 ~l~~~l~~l~~L~~L~L~~n~~~~ 243 (328) T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALR 243 (328) T ss_dssp CCCGGGGGCTTCCEEECTTCTTCC T ss_pred cCChhhccCCCCCEEECcCCcccc Confidence 766556678899999999987753No 129>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Probab=99.43 E-value=2.4e-13 Score=142.07 Aligned_cols=162 Identities=17% Similarity=0.070 Sum_probs=121.6 Q ss_pred CCccEEEccCCcCCCCcCcccccc-CCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQ-SFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~-~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) +.++.|+|++|+|+.++.. .+. .+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+....... +..+++| T Consensus 39 ~~l~~L~Ls~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 114 (361) T 2xot_A 39 SYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEFL-FSDLQAL 114 (361) T ss_dssp TTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTC T ss_pred CCCCEEECCCCCCCccccc--ccccccCCCCEEECCCCcCCEeCc-ccccCCCCCCEEECCCCcCCccCHHH-hcCcccC Confidence 5689999999999998764 233 88999999999999998873 468888 9999999999999887765 8889999 Q ss_pred cEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccC-cccccccccccc-ccceeeeecCC-cCc Q FBpp0305286 252 KNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDD-TEERFKLKKYYD-DQAMFSLSVPV-QLN 326 (559) Q Consensus 252 ~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~-~~~l~~L~~L~l-~N~l~sl~~~~-~~~ 326 (559) +.|++++|.+. ....+..+++|+.|++++| .|+.++..... ...+++|+.|++ .|.+..++... ..+ T Consensus 115 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N--------~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l 186 (361) T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN--------QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361) T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSS--------CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS T ss_pred CEEECCCCCCceeCHHHcCCcccCCEEECCCC--------cCCccCHHHhccccCCCcCCEEECCCCCCCeeCHHHhhhc Confidence 99999999664 3456788999999955444 44444332210 015889999999 88887765332 334 Q ss_pred ccc--ceeecCCccccCCChhhh Q FBpp0305286 327 YVY--GYKLYNRNQKRQHSSFAQ 347 (559) Q Consensus 327 ~~L--~~L~ls~N~i~~~~~~~r 347 (559) +.+ +.|++++|++.|.+.... T Consensus 187 ~~l~l~~l~L~~Np~~cdC~~~~ 209 (361) T 2xot_A 187 PAWVKNGLYLHNNPLECDCKLYQ 209 (361) T ss_dssp CHHHHTTEECCSSCEECCHHHHH T ss_pred hhhhcceEEecCCCcCCCCcCHH Confidence 443 489999999999876654No 130>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 4mqw_X* 1xwd_C* Probab=99.42 E-value=9e-14 Score=144.83 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=143.5 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCC-CCCCCCCccCc Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISA-NRIQDLGELNY 220 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~-N~L~~l~~l~~ 220 (559) ..+++.|.+.++.+..+ ....+.++++|++|+|++| .|+.++.. .+.++++|+.|+|++ |.++.++. .. T Consensus 29 ~~~l~~L~L~~n~l~~i------~~~~~~~l~~L~~L~Ls~n~~i~~i~~~--~~~~l~~L~~L~L~~~n~l~~~~~-~~ 99 (350) T 4ay9_X 29 PRNAIELRFVLTKLRVI------QKGAFSGFGDLEKIEISQNDVLEVIEAD--VFSNLPKLHEIRIEKANNLLYINP-EA 99 (350) T ss_dssp CTTCSEEEEESCCCSEE------CTTSSTTCTTCCEEEEECCTTCCEECTT--SBCSCTTCCEEEEEEETTCCEECT-TS T ss_pred CCCCCEEEecCCcCCcc------CHHHhhCCCCCCEEECCCCCCccEeChh--hhcCCCCCCEEECCCCCCccEeCH-HH Confidence 35677777777777633 1223478899999999999 89988654 357899999999998 99998873 46 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCcc--EEeCCCC-cCC--CchhccCC-CCcccccCCCCCCccchhhhhhh Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK--NVHGCVQ-LGE--STEAVDNI-PKSQQLQGGGTNGLKFCQDFISS 293 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~--~Ldl~~N-~~~--~~~~~~~l-p~Lk~L~l~~~~l~~L~~n~L~~ 293 (559) |.++ +|++|+|++|.+...+. +..+++|+ .|++++| .+. +...+..+ ++|+.| ++.+|.++. T Consensus 100 ~~~l~~L~~L~L~~n~l~~l~~---~~~l~~L~l~~L~l~~n~~l~~i~~~~~~~l~~~L~~L--------~L~~n~l~~ 168 (350) T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL--------WLNKNGIQE 168 (350) T ss_dssp BCCCTTCCEEEEEEECCSSCCC---CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE--------ECCSSCCCE T ss_pred hCCCCCCCEEeCcCCCCceecC---ccccCcchheEEECcCCCCccccChhhhhhhcccceEE--------EecCCCCCc Confidence 8888 99999999999987763 77889999 9999988 543 33367778 579999 566666666 Q ss_pred hcccccCcccccccccccc-ccc-eeeeecC-CcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhhcCCC Q FBpp0305286 294 YYTFFDDTEERFKLKKYYD-DQA-MFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRLPL 367 (559) Q Consensus 294 ~~~~~d~~~~l~~L~~L~l-~N~-l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~~LP~ 367 (559) ++.... ..++|+.|++ .|. +..++.. +..++.|++|++++|.++.... ..+..|..........+..+|. T Consensus 169 i~~~~~---~~~~L~~L~L~~n~~l~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~l~~L~~L~l~~n~~l~~lp~ 241 (350) T 4ay9_X 169 IHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPT 241 (350) T ss_dssp ECTTSS---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCC T ss_pred cCHHHc---CCCCcCEEECCCCCCcccCCHhHccCCCCCCEEeCCCCcccccCh-hhhhhHHHHhhccCCccccCCc Confidence 554333 2378999999 776 7777643 4567899999999998875433 2334444443323334444444No 131>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Probab=99.42 E-value=1.4e-13 Score=140.37 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=63.4 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC-CCCccCccCCC--CccEEEeecCcCCCcchhHHhcc Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ-DLGELNYINKL--SCKTIFLAGNGLAKLSVDVIRKM 247 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~l~~l--~L~~L~L~~N~l~~~~~~~il~~ 247 (559) ..+++|++|+|++|+++...+. .+..+++|+.|+|++|+++ .++. .+..+ +|++|++++|.+.+..+.. +.. T Consensus 122 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~--~l~~~~~~L~~L~l~~n~l~~~~~~~-~~~ 196 (313) T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPPT-FAN 196 (313) T ss_dssp GGCTTCCEEECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECCGG-GGG T ss_pred hccCCCCEEECcCCccCCcCCH--HHHhCCCCCEEECcCCeecccCCh--hHhhhhhheeEEECcCccccccCCch-Hhh Confidence 3444444444444444422111 1244444444444444444 2221 22222 3444444444444333322 333 Q ss_pred CCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-cccee-eeecCC Q FBpp0305286 248 LPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMF-SLSVPV 323 (559) Q Consensus 248 lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~-sl~~~~ 323 (559) + +|+.|++++|.+. ....+..+++|+.| ++++|.+...+..+. .+++|+.|++ .|.+. .++... T Consensus 197 ~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L--------~L~~n~l~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~l 264 (313) T 1ogq_A 197 L-NLAFVDLSRNMLEGDASVLFGSDKNTQKI--------HLAKNSLAFDLGKVG---LSKNLNGLDLRNNRIYGTLPQGL 264 (313) T ss_dssp C-CCSEEECCSSEEEECCGGGCCTTSCCSEE--------ECCSSEECCBGGGCC---CCTTCCEEECCSSCCEECCCGGG T ss_pred C-ccceEECcCCccCCcccHHHccCCCCcEE--------EccCceecccccccc---CCCCCCEEEccCCeecccCChHH Confidence 3 4455555444321 22234444555555 223333322222221 3455555555 44443 122223 Q ss_pred cCccccceeecCCcccc Q FBpp0305286 324 QLNYVYGYKLYNRNQKR 340 (559) Q Consensus 324 ~~~~~L~~L~ls~N~i~ 340 (559) ..++.|++|++++|.+. T Consensus 265 ~~l~~L~~L~L~~n~l~ 281 (313) T 1ogq_A 265 TQLKFLHSLNVSFNNLC 281 (313) T ss_dssp GGCTTCCEEECCSSEEE T ss_pred hCCCcCCEEECccCcce Confidence 44455566666666554No 132>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Probab=99.42 E-value=5.4e-13 Score=135.39 Aligned_cols=183 Identities=13% Similarity=-0.016 Sum_probs=109.1 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCC---Cc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDL---GE 217 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l---~~ 217 (559) ..+++|+.|.+.+|.+.......... ....+++|++|+|++|++..+... .+..+++|+.|+|++|++... +. T Consensus 118 ~~~~~L~~L~L~~n~i~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~~ 193 (312) T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAEL--QQWLKPGLKVLSIAQAHSLNFSCE--QVRVFPALSTLDLSDNPELGERGLIS 193 (312) T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHH--HTTCCTTCCEEEEESCSCCCCCTT--TCCCCSSCCEEECCSCTTCHHHHHHH T ss_pred ccCCCCcEEEecCCCCcchhhHHHHh--hhccCCcccEEEeeCCCCchhhhh--hhhcccCCCEEECcCCCCCCchhHHH Confidence 34666777777766665321111111 123467778888888777665532 246777788888888777642 21 Q ss_pred cCccCCC-CccEEEeecCcCCCcc--hhHHhccCCCccEEeCCCCcCCCch-hccCC--CCcccccCCCCCCccchhhhh Q FBpp0305286 218 LNYINKL-SCKTIFLAGNGLAKLS--VDVIRKMLPQLKNVHGCVQLGESTE-AVDNI--PKSQQLQGGGTNGLKFCQDFI 291 (559) Q Consensus 218 l~~l~~l-~L~~L~L~~N~l~~~~--~~~il~~lp~L~~Ldl~~N~~~~~~-~~~~l--p~Lk~L~l~~~~l~~L~~n~L 291 (559) ...+..+ +|++|+|++|.+.... ...++..+++|+.|++++|.+.... .+..+ ++|+.| ++++|.+ T Consensus 194 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L--------~L~~n~l 265 (312) T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL--------NLSFTGL 265 (312) T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE--------ECTTSCC T ss_pred HhhhccCCCccEEECCCCCCCcHHHHHHHHHhcCCCCcEEECcCCCCCCHHHHhhcccccCCCEE--------ECCCCcc Confidence 1124566 7788888887776432 1223566777888888777554332 23333 677777 5555555 Q ss_pred hhhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 292 SSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 292 ~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) +.++..+ .++|+.|++ .|.+.+++. ...++.|++|++++|.+.. T Consensus 266 ~~~~~~~-----~~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~l~~N~i~~ 310 (312) T 1wwl_A 266 KQVPKGL-----PAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312) T ss_dssp SSCCSSC-----CSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC T ss_pred chHHHHH-----hhhCcEEECcCCCCCcchh-hhhcCCCCEEECcCCCCCC Confidence 5444322 257777777 666666533 4566777777887777754No 133>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Probab=99.42 E-value=2.6e-13 Score=152.19 Aligned_cols=165 Identities=17% Similarity=0.077 Sum_probs=131.6 Q ss_pred hccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCc-chhHHhcc Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKL-SVDVIRKM 247 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~-~~~~il~~ 247 (559) +..+++|+.|+|++|+++.++... .+..+++|+.|+|++|+++.+.. ..+.++ +|++|+|++|.+.+. .+.. +.. T Consensus 416 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~ 492 (635) T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDI-FTE 492 (635) T ss_dssp CTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSC-CTT T ss_pred hcCCCCCCEEECCCCcCCCCCcch-hhcCCCCCCEEECCCCccCCCCc-ccccCCCCCCEEECCCCcCCccCchhh-hhc Confidence 467899999999999999876532 24889999999999999997653 478889 999999999999873 4444 889 Q ss_pred CCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecC- Q FBpp0305286 248 LPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVP- 322 (559) Q Consensus 248 lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~- 322 (559) +++|+.|++++|.+. .+..+..+++|+.| ++++|.++.... .+. ++++|+.|++ +|.+..++.. T Consensus 493 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L--------~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~ 561 (635) T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL--------NMSHNNFFSLDTFPYK---CLNSLQVLDYSLNHIMTSKKQE 561 (635) T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEE--------ECTTSCCCBCCCGGGT---TCTTCCEEECTTSCCCBCCSSC T ss_pred CCCCCEEECCCCcccccCHHHhhCcccccee--------eCCCCcccccCHhHhc---cCCcCCEEECCCCCcCccCHHH Confidence 999999999999764 34568899999999 666666665533 333 6899999999 8888876554 Q ss_pred CcCc-cccceeecCCccccCCChhhhh Q FBpp0305286 323 VQLN-YVYGYKLYNRNQKRQHSSFAQN 348 (559) Q Consensus 323 ~~~~-~~L~~L~ls~N~i~~~~~~~rl 348 (559) ...+ ..|++|++++|++.|.+....+ T Consensus 562 ~~~l~~~L~~l~l~~N~~~c~c~~~~~ 588 (635) T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEHQSF 588 (635) T ss_dssp TTCCCTTCCEEECTTCCBCCSGGGHHH T ss_pred HhhhhccCCEEEeCCCCccCCCCcHHH Confidence 3444 3699999999999997765443No 134>4bv4_R Protein TOLL, variable lymphocyte receptor B CHIM; cytokine recognition, embryonic development, immune system, immunity, leucine-rich repeats, cystine-knot; HET: NAG BMA MAN; 2.35A {Drosophila melanogaster} Probab=99.42 E-value=2.5e-13 Score=145.16 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=102.7 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) .++++|+.|.+.+|... ....++.++++|++|++++|.++.++.. .+..+++|+.|+|++|++..+.. .. T Consensus 144 ~~~~~L~~L~l~~~~~~-------~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-~~ 213 (446) T 4bv4_R 144 TDMRNLSHLELRANIEE-------MPSHLFDDLENLESIEFGSNKLRQMPRG--IFGKMPKLKQLNLWSNQLHNLTK-HD 213 (446) T ss_dssp TTCTTCCEEEEESCCSC-------CCGGGGTTCTTCCEEECTTSCCCSCCTT--GGGGCTTCCEEECCSSCCCCCCG-GG T ss_pred hccCCCCEEECCCChhh-------CcHhhhcCcccCCEEECCCCcCCccChh--HhcCcccCCEEECCCCCCCeeCH-HH Confidence 35566666666655111 1122346677777777777777776553 23667777777777777776552 35 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhccc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTF 297 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~ 297 (559) +.++ +|++|++++|.+....... +..+++|++|++++|.... ...+..+++|+.|.+.++.+. +..++.. T Consensus 214 ~~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~ 286 (446) T 4bv4_R 214 FEGATSVLGIDIHDNGIEQLPHDV-FAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVP------LATLPSR 286 (446) T ss_dssp GTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSCCCSCCCTTTTTTCTTCCEEEECCCSSC------CCCCCTT T ss_pred cCCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEEccCCcCCccChhhhcccccCCEEEccCCCCc------ceecCHH Confidence 6666 7777777777777665554 6677777777777774432 233556677777733333210 1222222 Q ss_pred ccCccccccccccccccceeeeecCC-cCccccceeecCCcccc Q FBpp0305286 298 FDDTEERFKLKKYYDDQAMFSLSVPV-QLNYVYGYKLYNRNQKR 340 (559) Q Consensus 298 ~d~~~~l~~L~~L~l~N~l~sl~~~~-~~~~~L~~L~ls~N~i~ 340 (559) ... ++++|+.|++.+.+..++... ..++.|++|++++|.+. T Consensus 287 ~~~--~~~~L~~L~l~~~l~~~~~~~~~~~~~L~~L~l~~~~l~ 328 (446) T 4bv4_R 287 LFA--NQPELQILRLRAELQSLPGDLFEHSTQITNISLGDNLLK 328 (446) T ss_dssp TTC--SCSSCCEEEECSCCCCCCTTTTTTCTTCCEEECTTSCCS T ss_pred HhC--CCCcceEEEcCCCccccChhhhcCcccCCEeECCCCcCC Confidence 211 455555555544444433221 33455555555555544No 135>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Probab=99.42 E-value=1.3e-13 Score=150.92 Aligned_cols=87 Identities=6% Similarity=-0.123 Sum_probs=56.8 Q ss_pred ccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceee-eec Q FBpp0305286 246 KMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFS-LSV 321 (559) Q Consensus 246 ~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~s-l~~ 321 (559) ..+++|++|++++|.+. .+..+..+++|+.|++++|.+..+. .++..+. ++++|+.|++ +|.+.. ++. T Consensus 321 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~ 392 (520) T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS-----KIAEMTT---QMKSLQQLDISQNSVSYDEKK 392 (520) T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-----HHHHHHT---TCTTCCEEECCSSCCBCCGGG T ss_pred ccCCcceEEECcCCcCchhhHHHHhhCCCCCEEECCCCCcCcch-----hhHHHHh---cCCCCCEEECcCCCCccccCh Confidence 45678889999988654 3456778899999944444433221 1222232 5788888888 666665 332 Q ss_pred C-CcCccccceeecCCcccc Q FBpp0305286 322 P-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 322 ~-~~~~~~L~~L~ls~N~i~ 340 (559) . +..++.|++|++++|.++ T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~ 412 (520) T 2z7x_B 393 GDCSWTKSLLSLNMSSNILT 412 (520) T ss_dssp CSCCCCTTCCEEECCSSCCC T ss_pred hhhccCCcccEEEeeCCCCC Confidence 2 345678888888888776No 136>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Probab=99.42 E-value=6e-13 Score=127.69 Aligned_cols=147 Identities=22% Similarity=0.149 Sum_probs=106.2 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) ..+++.|.+.++.+..+ ....+..+++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++.++. ..+. T Consensus 27 ~~~l~~L~l~~n~i~~~------~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 97 (208) T 2o6s_A 27 PAQTTYLDLETNSLKSL------PNGVFDELTSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQLQSLPN-GVFD 97 (208) T ss_dssp CTTCSEEECCSSCCCCC------CTTTTTTCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTT T ss_pred CCCCeEEEeCCCccccc------CHHHhCCCccCcEEECCCCcCCccCHh--HccCCCCcCEEECCCCcCCeeCH-HHhh Confidence 35566677767766532 122346788899999999998887654 34778899999999998887773 4567 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) .+ +|++|+|++|.+.+..... +..+++|++|++++|.+.. ...+..+++|+.| ++.+|.+.. T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~l~~N~~~~------ 162 (208) T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI--------WLHDNPWDC------ 162 (208) T ss_dssp TCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE--------ECCSCCBCC------ T ss_pred CccccCEEECCCCccCccCHHH-hcCCCCCCEEECCCCcCcccCHHHhhcCccCCEE--------EeeCCCccC------ Confidence 78 8999999999888877665 7888899999998886543 3346778888888 555554432 Q ss_pred Ccccccccccccc-ccce Q FBpp0305286 300 DTEERFKLKKYYD-DQAM 316 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l 316 (559) .+++|+.|++ .|.+ T Consensus 163 ---~~~~L~~L~l~~n~~ 177 (208) T 2o6s_A 163 ---TCPGIRYLSEWINKH 177 (208) T ss_dssp ---CTTTTHHHHHHHHHC T ss_pred ---CCcCHHHHHHHHHhC Confidence 4677888887 4444No 137>4lsc_A Somatic embryogenesis receptor kinase 1; LRR-domain, membrane CO-receptor, brassinosteroid binding, N glycosylation, protein binding; HET: NAG BMA FUC; 1.53A {Arabidopsis thaliana} PDB: 4lsx_C* Probab=99.42 E-value=2.2e-13 Score=132.86 Aligned_cols=155 Identities=11% Similarity=-0.008 Sum_probs=107.3 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC-CCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ-DLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..++|+.|+|++|.|+..... .+..+++|+.|+|++|+|+ .++. .+..+ +|++|+|++|.+.+..+.. +..++ T Consensus 49 ~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~ 123 (223) T 4lsc_A 49 NENSVIRVDLGNAELSGHLVP--ELGVLKNLQYLELYSNNITGPIPS--NLGDLTNLVSLDLYLNSFSGPIPES-LGKLS 123 (223) T ss_dssp TTSCEEEEECTTSCCEEBCCG--GGGGCTTCCEEECCSSCCEECCCT--TGGGCTTCSEEECCSSEEEECCCGG-GGGCT T ss_pred CCCCEEEEECCCCccCCcCCH--HHhCCCCCCEEECcCCeecCcCCH--HHhcCCCCCEEECcCCcCCCcccHH-HhcCC Confidence 457899999999999854322 2578999999999999999 4543 68888 9999999999999776665 88999 Q ss_pred CccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-cc-ceeeeecCCcC Q FBpp0305286 250 QLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQ-AMFSLSVPVQL 325 (559) Q Consensus 250 ~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N-~l~sl~~~~~~ 325 (559) +|+.|++++|.+. .+..+..+++|+.| ++++|.+....... . .+++|+.|++ .| .+......... T Consensus 124 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L--------~Ls~N~l~~~~~~~-~--~~~~L~~L~l~~N~~l~~~~~~~~~ 192 (223) T 4lsc_A 124 KLRFLRLNNNSLTGSIPMSLTQITTLQVL--------DLSNNRLSGSVPDN-G--SFSLFTPISFANNLDLCGPVTSHPC 192 (223) T ss_dssp TCCEEECCSSEEEECCCGGGGGCTTCCEE--------ECCSSEEEEECCCS-G--GGGGCCGGGTCSCSEEEBTTTTBCC T ss_pred CCCEEECcCCcCcCcCCHHHhcCCCCCEE--------EeeCCcccccCCCC-c--cCCCCCeeccCCCCCCcCCCccccc Confidence 9999999999653 44567889999999 66666666433322 2 6899999999 66 45543333345 Q ss_pred ccccceeecCCccccCC Q FBpp0305286 326 NYVYGYKLYNRNQKRQH 342 (559) Q Consensus 326 ~~~L~~L~ls~N~i~~~ 342 (559) .+.|++|++++|.+... T Consensus 193 ~~~L~~L~l~~N~~~~~ 209 (223) T 4lsc_A 193 PGSLENLYFQGAWSHPQ 209 (223) T ss_dssp CC--------------- T ss_pred ccccceEEecCCccccc Confidence 57899999999998753No 138>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Probab=99.42 E-value=4.5e-13 Score=146.52 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=80.4 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCcc-CccCCC-CccEEEeecCcCCC-cchhHHhccC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGEL-NYINKL-SCKTIFLAGNGLAK-LSVDVIRKML 248 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l-~~l~~l-~L~~L~L~~N~l~~-~~~~~il~~l 248 (559) .+++|++|+|++|+|+...+. .+..+++|+.|+|++|+|+.++.+ ..+.++ +|++|+|++|.+++ ..... +..+ T Consensus 322 ~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l 398 (520) T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWT 398 (520) T ss_dssp SCCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCC T ss_pred cCCcceEEECcCCcCchhhHH--HHhhCCCCCEEECCCCCcCcchhhHHHHhcCCCCCEEECcCCCCccccChhh-hccC Confidence 344455555555555432111 124445555555555555443211 123444 55555555555544 22222 4444 Q ss_pred CCccEEeCCCCcCCCchhccCC-CCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeec-CCcC Q FBpp0305286 249 PQLKNVHGCVQLGESTEAVDNI-PKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSV-PVQL 325 (559) Q Consensus 249 p~L~~Ldl~~N~~~~~~~~~~l-p~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~ 325 (559) ++|+.|++++|.+... .+..+ ++|+.| ++++|.++.++..+. ++++|+.|++ +|.+.+++. .+.. T Consensus 399 ~~L~~L~Ls~N~l~~~-~~~~l~~~L~~L--------~Ls~N~l~~ip~~~~---~l~~L~~L~Ls~N~l~~ip~~~~~~ 466 (520) T 2z7x_B 399 KSLLSLNMSSNILTDT-IFRCLPPRIKVL--------DLHSNKIKSIPKQVV---KLEALQELNVASNQLKSVPDGIFDR 466 (520) T ss_dssp TTCCEEECCSSCCCGG-GGGSCCTTCCEE--------ECCSSCCCCCCGGGG---GCTTCCEEECCSSCCCCCCTTTTTT T ss_pred CcccEEEeeCCCCCcc-chhhccCCcCEE--------ECCCCCchhhhhhhh---ccCCCCEEECCCCcCCCcCHHHhcc Confidence 5555555555543221 12222 345555 445555555555433 5777888888 677766554 2345 Q ss_pred ccccceeecCCccccCCChh Q FBpp0305286 326 NYVYGYKLYNRNQKRQHSSF 345 (559) Q Consensus 326 ~~~L~~L~ls~N~i~~~~~~ 345 (559) ++.|++|++++|++.|.+.. T Consensus 467 l~~L~~L~l~~N~~~c~c~~ 486 (520) T 2z7x_B 467 LTSLQKIWLHTNPWDCSCPR 486 (520) T ss_dssp CTTCCEEECCSSCBCCCHHH T ss_pred CCCCCEEEeeCCceeceecc Confidence 67777888888888776544No 139>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Probab=99.42 E-value=8e-13 Score=125.47 Aligned_cols=154 Identities=13% Similarity=0.167 Sum_probs=122.0 Q ss_pred ccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCc Q FBpp0305286 138 LDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGE 217 (559) Q Consensus 138 LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~ 217 (559) +..+.+++++.|.+.+|.+..+. .+..+++|++|+|++|.++.++.+ ..+++|+.|+|++|+++... T Consensus 38 i~~~~~~~L~~L~l~~~~i~~l~--------~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~- 104 (197) T 4ezg_A 38 ITEAQMNSLTYITLANINVTDLT--------GIEYAHNIKDLTINNIHATNYNPI----SGLSNLERLRIMGKDVTSDK- 104 (197) T ss_dssp CBHHHHHTCCEEEEESSCCSCCT--------TGGGCTTCSEEEEESCCCSCCGGG----TTCTTCCEEEEECTTCBGGG- T ss_pred cChHHcCCCcEEEeeCCcccCcH--------HHccCCCCCEEEeeCCCccchhhh----cCCCCCCEEEeeCCccCccc- Confidence 34457888999999888776432 236889999999999999887643 78999999999999999743 Q ss_pred cCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCc-CCCchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 218 LNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQL-GESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 218 l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~-~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) ...+.++ +|++|+|++|.+.+..+.. +..+++|+.|++++|. +...+.+..+++|+.| ++++|.+..++ T Consensus 105 ~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~~i~~~~~~~~~~~L~~L--------~l~~n~l~~~~ 175 (197) T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSL--------NIQFDGVHDYR 175 (197) T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEE--------ECTTBCCCCCT T ss_pred hHHHhCCCCCCEEeccCCccCchhhhh-hhcCCCCCEEeCccCCCcccchhhhcCCCCCEE--------EccCCcCCChH Confidence 2378888 9999999999999876665 8899999999999997 7766678899999999 55555555544 Q ss_pred ccccCcccccccccccc-cccee Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMF 317 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~ 317 (559) .+. .+++|+.|++ +|.+. T Consensus 176 -~l~---~l~~L~~L~l~~n~i~ 194 (197) T 4ezg_A 176 -GIE---DFPKLNQLYAFSQTIG 194 (197) T ss_dssp -TGG---GCSSCCEEEECBC--- T ss_pred -HHH---hCCCCCEEEeeCCCcC Confidence 222 6889999999 66654No 140>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Probab=99.41 E-value=4.1e-13 Score=149.55 Aligned_cols=182 Identities=14% Similarity=0.050 Sum_probs=117.1 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++|+.|.+.+|.+... .....+..+++|++|+|++|+++.+......+..+++|+.|+|++|+++.+.. ..+ T Consensus 323 ~l~~L~~L~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~ 396 (606) T 3t6q_A 323 NFPSLTHLSIKGNTKRLE-----LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAF 396 (606) T ss_dssp GCTTCSEEECCSCSSCCB-----CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT-TTT T ss_pred cCCCCCEEECCCCccccc-----cchhhhccCCcCCEEECCCCCcCCccccchhccCCCCCCEEECCCCcCCccCH-hhh Confidence 456677777776654310 00112367788888888888887764212234778888888888888876542 367 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhh--hcc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISS--YYT 296 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~--~~~ 296 (559) ..+ +|++|++++|.+.+..+...+..+++|+.|++++|.+. .+..+..+++|+.| ++++|.+.. ++. T Consensus 397 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~ 468 (606) T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL--------NLQGNHFPKGNIQK 468 (606) T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE--------ECTTCBCGGGEECS T ss_pred ccCcccceeeccCCCcccccchhhhhccccCCEEECCCCcccccCHhHHhCCCccCEE--------ECCCCCCCcccccc Confidence 777 88888888888876644333677888888888887543 34456777888888 444444433 111 Q ss_pred --cccCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 297 --FFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 297 --~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) .+. .+++|+.|++ .|.+..+... +..++.|++|++++|.+. T Consensus 469 ~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606) T 3t6q_A 469 TNSLQ---TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606) T ss_dssp SCGGG---GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC T ss_pred chhhc---cCCCCCEEeCCCCcCCccCHhHhCCCCCCCEEECCCCcCC Confidence 121 5777778888 6666665422 456677777888877775No 141>3wo9_A Variable lymphocyte receptor C; leucine rich repeat, immunological receptor, membrane, immun; 2.30A {Lethenteron camtschaticum} SCOP: c.10.2.0 PDB: 4po4_A Probab=99.41 E-value=1.3e-12 Score=129.64 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=67.9 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|+.|+|++|+|+.++.. .+.++++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+.+..+.. +..+++|+ T Consensus 66 ~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 141 (248) T 3wo9_A 66 ANTEKLQLDFNQLANIPAE--AFHGLTRLTYLALDYNQLQSLPV-GVFDQLNNLNELRLQDNQLTSLPPGV-FDSLTKLT 141 (248) T ss_dssp TTCSEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC T ss_pred CCCCEEEeCCCCCCEECHH--HcCCccCCCEEECCCCcCCeeCh-hhccCCCCCCEEECCCCcCcccCHhH-hcccccCC Confidence 5566666666666665542 23556666666666666665552 345555 6666666666666655543 55666666 Q ss_pred EEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD 312 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l 312 (559) .|++++|.+.. ...+..+++|+.| ++++|.++.++..... .+++|+.|++ T Consensus 142 ~L~Ls~N~l~~~~~~~~~~l~~L~~L--------~L~~N~l~~~~~~~~~--~l~~L~~L~l 193 (248) T 3wo9_A 142 YLTLSQNQLQSIPAGVFDKLTNLNRL--------ELSTNQLQSVPHGAFD--SLVNLETLHL 193 (248) T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEE--------ECCSSCCSCCCTTTTT--TCTTCCEEEC T ss_pred EEECCCCcCCeeCHhHhCCCCCCCEE--------ECCCCCCCccCHHHhc--cCCCCCEEEC Confidence 66666664432 2234556666666 3333333333321111 3556666666No 142>4cil_A YOPM-CAP, internalin B; signaling protein, capping, fusion protein, LRR, protein CHI protein design, protein engineering; 1.50A {Yersinia enterocolitica} Probab=99.41 E-value=1.2e-12 Score=131.95 Aligned_cols=148 Identities=20% Similarity=0.222 Sum_probs=98.6 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+++.++. +..+++|+.|+|++|.++.++. +..+ +|++|++++|.+.+... +..++ T Consensus 61 ~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~ 130 (287) T 4cil_A 61 QYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLSS---LKDLKKLKSLSLEHNGISDING---LVHLP 130 (287) T ss_dssp CCCTTCCEEECTTCCCSCCGG----GTTCTTCCEEECTTCCCCCCGG---GTTCTTCCEEECTTSCCCCCGG---GGGCT T ss_pred hcCCCCCEEEeeCCCCccccc----hhcCCCCCEEECcCCccCCchh---hcCCCCCCEEEccCCcCCcccc---ccCCC Confidence 567777777777777777655 2677777777777777776653 6666 77777777777776542 66777 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +|+.|++++|.+...+.+..+++|+.|++ ++|.+..... +. .+++|+.|++ .|.+..++ ....++. T Consensus 131 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l--------~~n~l~~~~~-~~---~l~~L~~L~l~~n~l~~~~-~l~~l~~ 197 (287) T 4cil_A 131 QLESLYLGNNKITDITVLSRLTKLDTLSL--------EDNQISDIVP-LA---GLTKLQNLYLSKNHISDLR-ALAGLKN 197 (287) T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEEC--------CSSCCCCCGG-GT---TCTTCCEEECCSSCCCBCG-GGTTCTT T ss_pred CCCEEECCCCCCCcchhhcCCCCCCEEEC--------CCCcccCchh-hc---cCCcCCEEEeeCCCCCCCh-hhcCCCC Confidence 77777777776655556667777777733 3333333322 11 4677777777 66665542 3355677 Q ss_pred cceeecCCccccC Q FBpp0305286 329 YGYKLYNRNQKRQ 341 (559) Q Consensus 329 L~~L~ls~N~i~~ 341 (559) |++|++++|.+.. T Consensus 198 L~~L~l~~n~~~~ 210 (287) T 4cil_A 198 LDVLELFSQECLN 210 (287) T ss_dssp CSEEEEEEEEEEC T ss_pred CCEEEecCCCccC Confidence 7777777777653No 143>4rca_B SLIT and NTRK-like protein 1; leucine rich-repeat, IG-like domain, synaptic adhesion, SIGN protein; HET: NAG; 2.99A {Homo sapiens} Probab=99.41 E-value=6.5e-13 Score=131.26 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=124.4 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ..++.++++++.++.++.. +..+++|+.|+|++|.++.+.. ..+.++ +|++|+|++|.+.+..+.. +..+++|+ T Consensus 16 ~~~~~l~~~~~~l~~l~~~---~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 90 (251) T 4rca_B 16 EGDLHVDCEKKGFTSLQRF---TAPTSQFYHLFLHGNSLTRLFP-NEFANFYNAVSLHMENNGLHEIVPGA-FLGLQLVK 90 (251) T ss_dssp SSSEEEECTTSCCSCSSSC---CCCSSCCEEEECTTSCCCEECT-TTTGGGTTEEEEECCSSCCCEECTTT-TTTCCSCC T ss_pred CCceEEEcCCCCcccCccc---cCCCCceeEEECCCCccCccCh-hhcccCCCCCEEECCCCcCCEeCHhh-cCCCccCC Confidence 3567999999999999875 4788999999999999998752 478888 9999999999999887666 89999999 Q ss_pred EEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 253 NVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 253 ~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) .|++++|.+. ....+..+++|+.| ++++|.+..+.. .+. .+++|+.|++ +|.+..++.....++. T Consensus 91 ~L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~l~~~~~~~~~ 159 (251) T 4rca_B 91 RLHINNNKIKSFRKQTFLGLDDLEYL--------QADFNLLRDIDPGAFQ---DLNKLEVLILNDNLISTLPANVFQYVP 159 (251) T ss_dssp EEECCSSCCCEECTTTTTTCSSCCEE--------ECCSSCCCEECGGGST---TCTTCCEEECCSSCCCCCCTTTTTTCC T ss_pred EEECCCCccCccChhhccCCccCCEE--------ECCCCCCCccCHhHhc---CCcCCCEEECCCCccCccCHhHcCcCC Confidence 9999999764 34457889999999 555555555432 332 6899999999 8888876655566789 Q ss_pred cceeecCCccccCC Q FBpp0305286 329 YGYKLYNRNQKRQH 342 (559) Q Consensus 329 L~~L~ls~N~i~~~ 342 (559) |++|++++|.++.. T Consensus 160 L~~L~L~~N~l~~~ 173 (251) T 4rca_B 160 ITHLDLRGNRLKTL 173 (251) T ss_dssp CCEEECCSSCCCCC T ss_pred CCEEECCCCcCeEe Confidence 99999999998753No 144>4lxr_A Protein TOLL; TLR, leucine-rich repeat, immune system, cytokine receptor, development, innate immunity; HET: NAG BMA MAN EPE; 2.20A {Drosophila melanogaster} PDB: 4lxs_A* Probab=99.41 E-value=5.3e-13 Score=153.66 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=53.4 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|+.|+|++|+++.++.. ++..+++|+.|+|++|+|+.++. ..|..+ +|++|+|++|.+.+..+.. +..++ T Consensus 312 ~~~~~L~~L~L~~n~l~~l~~~--~~~~~~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 387 (783) T 4lxr_A 312 EHSTQITNISLGDNLLKTLPAT--LLEHQVNLLSLDLSNNRLTHLPD-SLFAHTTNLTDLRLEDNLLTGISGDI-FSNLG 387 (783) T ss_dssp TTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSCCSCCCT-TTTSSCTTCCEEECCSSCCCEECSST-TTTCT T ss_pred CcCCCCCEEECCCCccCcCCHH--HhhccCCCCEEECCCCcCCcCCh-hHhcCccccceEeCCCCcCCccCHHH-HhcCc Confidence 4455555555555555555433 22445555555555555555542 234445 5555555555555544433 45555 Q ss_pred CccEEeCCCCcCC--CchhccCCCCcccccCCCC Q FBpp0305286 250 QLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGT 281 (559) Q Consensus 250 ~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~ 281 (559) +|+.|++++|.+. ....+..+++|+.|++++| T Consensus 388 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 421 (783) T 4lxr_A 388 NLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHN 421 (783) T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCSS T ss_pred CCCEEECcCCcCCeeCHhHhhccCCCCEEECCCC Confidence 5555555555332 2233444555555544333No 145>3wn4_A TOLL-like receptor 8; leucine rich repeat, RNA, glycosylation, innate immunity, RN recognition, ssrnar, structure-based ligand design; HET: D87 NAG BMA MAN; 1.81A {Homo sapiens} PDB: 3w3g_A* 3w3k_A* 3w3l_A* 3w3m_A* 3w3n_A* 3w3j_A* 4qbz_A* 4qc0_A* 4r07_A* 4r08_A* 4r09_A* 4r0a_A* Probab=99.40 E-value=4.3e-13 Score=154.64 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=85.8 Q ss_pred hccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCc------cCccCCC-CccEEEeecCcCCCcchh Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGE------LNYINKL-SCKTIFLAGNGLAKLSVD 242 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~------l~~l~~l-~L~~L~L~~N~l~~~~~~ 242 (559) +..+++|++|+|++|+|+.+.+.. +..+++|+.|+|++|+++.+.. ...+.++ +|++|+|++|.+.++++. T Consensus 558 ~~~l~~L~~L~Ls~N~i~~~~~~~--~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~ 635 (811) T 3wn4_A 558 IQNFTNLKVLNLSHNNIYTLTDKY--NLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNE 635 (811) T ss_dssp GGGCSSCCEEECTTSCCCCCSSCC--CCCBSSCCEEECTTSCHHHHTCTTCCTTTTTTTTBTTCCEEECCSSCCSCCCHH T ss_pred hcccCCCCEEECCCCcccccchhh--ccccCCCCEEEcCCCccccccccccchhhHHhcCCCCCCEEECCCCcCCccChh Confidence 367788888888888887765431 1344555666666665543210 1134555 666666666666655544 Q ss_pred HHhccC-CCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCc----------------cchhhhhhhhcccccCccc Q FBpp0305286 243 VIRKML-PQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGL----------------KFCQDFISSYYTFFDDTEE 303 (559) Q Consensus 243 ~il~~l-p~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~----------------~L~~n~L~~~~~~~d~~~~ 303 (559) . +..+ ++|+.|++++|.+. +...+..+++|+.|++++|.+. ++++|.++.++..... + T Consensus 636 ~-~~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~ 712 (811) T 3wn4_A 636 A-FLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLS--E 712 (811) T ss_dssp H-HHTSCTTCSEEECCSSCCSCCCGGGGGGCTTCCEEECCSSCCCCCCSCGGGTCSSCCEEECCSSCCCCCCTTTTT--S T ss_pred h-hhhcchhcceEECCCCcccccCHhHhccCCCCCEEECCCCcccccChhHhccccccCEEECCCCcccccCHHHhc--c Confidence 4 4444 35555555555432 2233445555555522222221 3333334333332111 3 Q ss_pred ccccccccc-ccceeeeecCC---cCccccceeecCCccccCCChh Q FBpp0305286 304 RFKLKKYYD-DQAMFSLSVPV---QLNYVYGYKLYNRNQKRQHSSF 345 (559) Q Consensus 304 l~~L~~L~l-~N~l~sl~~~~---~~~~~L~~L~ls~N~i~~~~~~ 345 (559) +++|+.|++ .|.+..++... ...+.|+++++++|++.|.+.. T Consensus 713 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~l~l~~Np~~c~c~~ 758 (811) T 3wn4_A 713 VSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDI 758 (811) T ss_dssp CTTCCEEECCSSCCCCCCHHHHCSSSCCCCSEEECTTCCEECSGGG T ss_pred CcCCCEEECCCCcCCccCHHHhccccccCccEEEecCCCCcCCCcc Confidence 555555555 44444433211 1244555666666666555444No 146>4xa9_A GAla protein type 1, 3 or 4; structural genomics, infection, effector, papain-like cystei protease family, leucine-rich-repeat, complex; 2.00A {Legionella pneumophila subsp} Probab=99.40 E-value=1.4e-14 Score=146.68 Aligned_cols=176 Identities=19% Similarity=0.067 Sum_probs=83.8 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) +++++.|.+.+|.+.. .....+..+++|++|+|++|+|+..... .+..+++|+.|+|++|+++... ...+. T Consensus 42 ~~~L~~L~L~~n~l~~------~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~~~L~~L~ls~n~l~~~~-~~~l~ 112 (297) T 4xa9_A 42 HPAITSLDLSHNDITA------NGVKLFVNKTSVSSLNISHNNIGPEGAQ--WLSEDNHITTLDVSFNEIGDEG-VKALA 112 (297) T ss_dssp CTTCCEEECCSSCCCH------HHHHHHTTSSCCCEEECCSSCCHHHHHH--HHTTCSSCCEEECCSSCCHHHH-HHHHH T ss_pred CCCccEEECcCCCCCh------HHHHHHhcCCCCcEEECcCCCCCHHHHH--HHhCCCccCEEEeeCCCCCHHH-HHHHh Confidence 4445555555554431 1112234455555555555555543211 1244555555555555555432 11344 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc-cc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FF 298 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~ 298 (559) .+ +|++|+|++|.+....... +..+ +|+.|++++|.+.. ...+..+++|+.|++ ++|.+..... .+ T Consensus 113 ~~~~L~~L~l~~n~i~~~~~~~-~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l--------~~n~l~~~~~~~l 182 (297) T 4xa9_A 113 ANAKLITLYALYNKITKVGAGY-LAQS-NLKKIDLCFNSLEDEGVIALASNINIKELIA--------SACDVSDIGAIEL 182 (297) T ss_dssp HCTTCSEEECCSSCCCHHHHHH-HTTS-CCSEEECTTCCCHHHHHHHHHTCTTCSEEEC--------CSSCCBHHHHHHH T ss_pred cCCCCCEEECcCCCCCHHHHHH-HHhC-CccEEEeeCCCCCcHHHHHHhcCCCCCEEEC--------cCCCCChHHHHHH Confidence 44 5555555555555544433 3333 55555555554332 233445556666633 3333322211 11 Q ss_pred cCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) . .+++|+.|++ .|.+...... ...++.|++|++++|.+. T Consensus 183 ~---~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 223 (297) T 4xa9_A 183 A---KNNQLTLLILGKNAITDKSTLHFANNTSLSTLHLGSNQIT 223 (297) T ss_dssp H---HCSSCSEEECCSSBCCGGGHHHHHSCSSCSEEECCSSSCC T ss_pred h---cCCCcCEEECcCCcCChHHHHHHhcCCCcCEEeCcCCCCC Confidence 1 3566666666 5554443221 234566666667666655No 147>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Probab=99.40 E-value=1.8e-13 Score=138.93 Aligned_cols=157 Identities=13% Similarity=0.009 Sum_probs=83.3 Q ss_pred cCCCccEEEccCCcCCCCcCccccc--cCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcch--hH-Hh Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNS--QSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSV--DV-IR 245 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~--~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~--~~-il 245 (559) .+++|++|+|++|.++..+.....+ ..+++|+.|+|++|++..+. ...+..+ +|++|+|++|.+.+... .. .+ T Consensus 119 ~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 197 (312) T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312) T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT T ss_pred cCCCCcEEEecCCCCcchhhHHHHhhhccCCcccEEEeeCCCCchhh-hhhhhcccCCCEEECcCCCCCCchhHHHHhhh Confidence 4666666666666666544321111 22556666666666666554 2355566 66666666666655321 11 13 Q ss_pred ccCCCccEEeCCCCcCCCc-----hhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccc--cccccccc-cccee Q FBpp0305286 246 KMLPQLKNVHGCVQLGEST-----EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEER--FKLKKYYD-DQAMF 317 (559) Q Consensus 246 ~~lp~L~~Ldl~~N~~~~~-----~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l--~~L~~L~l-~N~l~ 317 (559) ..+++|++|++++|.+... ..+..+++|+.| ++++|.+...+..+. .. ++|+.|++ +|.+. T Consensus 198 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L--------~Ls~n~l~~~~~~~~---~~~~~~L~~L~L~~n~l~ 266 (312) T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL--------DLSHNSLRDAAGAPS---CDWPSQLNSLNLSFTGLK 266 (312) T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE--------ECTTSCCCSSCCCSC---CCCCTTCCEEECTTSCCS T ss_pred ccCCCccEEECCCCCCCcHHHHHHHHHhcCCCCcEE--------ECcCCCCCCHHHHhh---cccccCCCEEECCCCccc Confidence 5666666666666654321 124455666666 444444444222222 12 66667777 55554 Q ss_pred eeecCCcCccccceeecCCccccCC Q FBpp0305286 318 SLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 318 sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) . ++....+.|++|++++|.++.. T Consensus 267 ~--~~~~~~~~L~~L~L~~n~l~~~ 289 (312) T 1wwl_A 267 Q--VPKGLPAKLSVLDLSYNRLDRN 289 (312) T ss_dssp S--CCSSCCSEEEEEECCSSCCCSC T ss_pred h--HHHHHhhhCcEEECcCCCCCcc Confidence 3 2332236667777777766543No 148>4rcw_A SLIT and NTRK-like protein 1; leucine rich-repeat, synaptic adhesion, signaling protein; 3.19A {Homo sapiens} Probab=99.40 E-value=9.2e-13 Score=129.27 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=121.4 Q ss_pred CccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccE Q FBpp0305286 175 HVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKN 253 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~ 253 (559) ....|++++|.++.++.. +..+++|+.|+|++|.|+.+.. ..+.++ +|++|+|++|.+.+..+.. +..+++|+. T Consensus 13 ~~~~l~~~~~~l~~lp~~---~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 87 (240) T 4rcw_A 13 SGLKMNCNNRNVSSLADL---KPKLSNVQELFLRDNKIHSIRK-SHFVDYKNLILLDLGNNNIATVENNT-FKNLLDLRW 87 (240) T ss_dssp -CEEEECCSSCCCCSSCC---C---CCEEEEECCSCCCCEECG-GGGSSCCSCSEEECCSCCCCEECTTT-TTTCCSCCE T ss_pred CceEEeCCCCCccccccc---ccCCCCCeEEEccCCcCCccCH-hHcccCCCCCEEECCCCCCCeeCHhh-cCCCCCCCE Confidence 478999999999998875 4789999999999999998763 468888 9999999999999987766 889999999 Q ss_pred EeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhc-ccccCcccccccccccc-ccceeeeecCCcCcccc Q FBpp0305286 254 VHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY-TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVY 329 (559) Q Consensus 254 Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~-~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L 329 (559) |++++|.+. ....+..+++|+.| ++++|.++... ..+. .+++|+.|++ .|.+..++........| T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~l~~~~~~~~~L 156 (240) T 4rcw_A 88 LYMDSNYLDTLSREKFAGLQNLEYL--------NVEYNAIQLILPGTFN---AMPKLRILILNNNLLRSLPVDVFAGVSL 156 (240) T ss_dssp EECCSSCCCEECTGGGTTCSSCCEE--------ECCSSCCCEECTTGGG---SCTTCCEEECCSSCCCCCCTTSSSSCCC T ss_pred EECCCCccCcCCHHHhCCCCccCEE--------ECCCCcCCccChhHhc---CCcCCCEEECCCCccCccCHHHcCCCCc Confidence 999999764 34568889999999 55555555542 2333 5899999999 88888776555667789 Q ss_pred ceeecCCccccC Q FBpp0305286 330 GYKLYNRNQKRQ 341 (559) Q Consensus 330 ~~L~ls~N~i~~ 341 (559) ++|++++|.+.. T Consensus 157 ~~L~L~~N~l~~ 168 (240) T 4rcw_A 157 SKLSLHNNYFMY 168 (240) T ss_dssp SEEECCSSCCSC T ss_pred CEEECCCCcCCc Confidence 999999999874No 149>4j0m_A Serine/threonine-protein kinase BRI1-like 1; leucine-rich repeat, receptor, transferase; HET: NAG BLD BMA MAN; 2.50A {Arabidopsis thaliana} Probab=99.39 E-value=2.9e-13 Score=154.76 Aligned_cols=108 Identities=19% Similarity=0.099 Sum_probs=64.3 Q ss_pred ccCCCccEEEccCCcCC-CCcCccccccCCCCCCEEeCCCCCCCC-CCccCccCCC-CccEEEeecCcCCCcchhHHhcc Q FBpp0305286 171 HLFPHVTSLVLSNNYLC-SLKAFAGNSQSFASLERLDISANRIQD-LGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKM 247 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~-~l~~~~~l~~~l~~L~~L~Ls~N~L~~-l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~ 247 (559) ..+++|+.|++++|+++ .++.. .+..+++|+.|+|++|+++. ++. .+..+ +|++|+|++|.+.+..+.. +.. T Consensus 423 ~~l~~L~~L~l~~n~l~~~ip~~--~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~-l~~ 497 (740) T 4j0m_A 423 WMLPNLSDLVMWANNLTGTIPEG--VCVKGGNLETLILNNNLLTGSIPE--SISRCTNMIWISLSSNRLTGKIPSG-IGN 497 (740) T ss_dssp HTCTTCCEEECCSSEEESCCCTT--TTTSSCCCSEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSBCCGG-GGG T ss_pred hcCCCCCEEECCCCcceeecChH--HhcccCCcCEEECCCCcCCCcCCH--HHhcCCCCCEEECcCCcccCchhHH-Hhc Confidence 34455555555555554 23311 23556677777777777663 332 56666 7777777777777655554 666 Q ss_pred CCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCC Q FBpp0305286 248 LPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 248 lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l 283 (559) +++|+.|++++|... .+..+..+++|+.|++++|.+ T Consensus 498 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 535 (740) T 4j0m_A 498 LSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNL 535 (740) T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE T ss_pred CCCCCEEECCCCccCCcCCHHHhCCCCCCEEECCCCcc Confidence 777777777777542 334566677777776655543No 150>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Probab=99.39 E-value=2.5e-13 Score=138.56 Aligned_cols=183 Identities=14% Similarity=0.041 Sum_probs=136.7 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCC-CCcCccccccCC-CCCCEEeCCCCCCCCCCc Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLC-SLKAFAGNSQSF-ASLERLDISANRIQDLGE 217 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~-~l~~~~~l~~~l-~~L~~L~Ls~N~L~~l~~ 217 (559) +..+.+|+.|.+.+|.+... ....+..+++|++|+|++|+++ .++.. +..+ ++|+.|+|++|.++.... T Consensus 121 ~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~~~~~L~~L~l~~n~l~~~~~ 191 (313) T 1ogq_A 121 LSQIKTLVTLDFSYNALSGT------LPPSISSLPNLVGITFDGNRISGAIPDS---YGSFSKLFTSMTISRNRLTGKIP 191 (313) T ss_dssp GGGCTTCCEEECCSSEEESC------CCGGGGGCTTCCEEECCSSCCEEECCGG---GGCCCTTCCEEECCSSEEEEECC T ss_pred HhccCCCCEEECcCCccCCc------CCHHHHhCCCCCEEECcCCeecccCChh---HhhhhhheeEEECcCccccccCC Confidence 44677888888888776521 1123478999999999999998 44433 4666 999999999999994331 Q ss_pred cCccCCCCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC-CchhccCCCCcccccCCCCCCccchhhhhh-hhc Q FBpp0305286 218 LNYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE-STEAVDNIPKSQQLQGGGTNGLKFCQDFIS-SYY 295 (559) Q Consensus 218 l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~-~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~-~~~ 295 (559) ..+..++|++|+|++|.+.+..+.. +..+++|+.|++++|.+. ....+..+++|+.| ++++|.+. ..+ T Consensus 192 -~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L--------~L~~n~l~~~~~ 261 (313) T 1ogq_A 192 -PTFANLNLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL--------DLRNNRIYGTLP 261 (313) T ss_dssp -GGGGGCCCSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEE--------ECCSSCCEECCC T ss_pred -chHhhCccceEECcCCccCCcccHH-HccCCCCcEEEccCceeccccccccCCCCCCEE--------EccCCeecccCC Confidence 2566669999999999999877665 899999999999999665 44566778999999 55555555 333 Q ss_pred ccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCCCh Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~ 344 (559) ..+. .+++|+.|++ .|.+.........++.|+.+++++|++.+..+ T Consensus 262 ~~l~---~l~~L~~L~L~~n~l~~~~p~~~~l~~L~~l~l~~N~~lc~~~ 308 (313) T 1ogq_A 262 QGLT---QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313) T ss_dssp GGGG---GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT T ss_pred hHHh---CCCcCCEEECccCcceeecCCCccccccchHHhcCCcccCCCC Confidence 3443 6899999999 66665322223678999999999999876543No 151>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Probab=99.39 E-value=5.3e-13 Score=148.52 Aligned_cols=102 Identities=19% Similarity=0.156 Sum_probs=53.4 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) .++++|++|+|++|+|+.+++. .+.++++|+.|+|++|+|+.+.+ ..|.++ +|++|+|++|.+.+..+.. ++.++ T Consensus 53 ~~l~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 128 (606) T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLASLESFP-IGQLI 128 (606) T ss_dssp TTCTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSSSC-CTTCT T ss_pred cCCCCCcEEECCCCccCeeCHH--HhhChhhCCEEECcCCccCccCh-hhccCcccCCEEEeccCccccccccc-cCCcc Confidence 4555555555555555554332 13455555555555555555431 245555 5555555555555544333 55555 Q ss_pred CccEEeCCCCcCCC---chhccCCCCcccc Q FBpp0305286 250 QLKNVHGCVQLGES---TEAVDNIPKSQQL 276 (559) Q Consensus 250 ~L~~Ldl~~N~~~~---~~~~~~lp~Lk~L 276 (559) +|++|+++.|.+.. +..+..+++|+.| T Consensus 129 ~L~~L~L~~n~l~~~~~p~~~~~l~~L~~L 158 (606) T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606) T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEE T ss_pred cCCEEECCCCcccceechHhHhccCCCCEE Confidence 55555555554321 2345555555555No 152>4lxr_A Protein TOLL; TLR, leucine-rich repeat, immune system, cytokine receptor, development, innate immunity; HET: NAG BMA MAN EPE; 2.20A {Drosophila melanogaster} PDB: 4lxs_A* Probab=99.39 E-value=4.3e-13 Score=154.36 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=34.0 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ 250 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~ 250 (559) ++++|++|+|++|+++.+.+. .+.++++|+.|+|++|+++.++. ..|.++ +|++|+|++|.+..++... +..+++ T Consensus 192 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~i~~~~-~~~~~~ 267 (783) T 4lxr_A 192 KMPKLKQLNLWSNQLHNLTKH--DFEGATSVLGIDIHDNGIEQLPH-DVFAHLTNVTDINLSANLFRSLPQGL-FDHNKH 267 (783) T ss_dssp GCTTCCEEECCSSCCCCCCGG--GGTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSCCCSCCCTTT-TTTCTT T ss_pred CCcCCCEEECCCCcCCcCCHh--HccCCCCCCEEECCCCCcCcCCH-HHhcCCCCCCEEECCCCccCccCHHH-hhcccC Confidence 344444444444444443221 12344444444444444443331 233444 4444444444444333222 334444 Q ss_pred ccEEeCCCC Q FBpp0305286 251 LKNVHGCVQ 259 (559) Q Consensus 251 L~~Ldl~~N 259 (559) |+.|++++| T Consensus 268 L~~L~L~~n 276 (783) T 4lxr_A 268 LNEVRLMNN 276 (783) T ss_dssp CCEEEECCC T ss_pred CCeEECcCC Confidence 444444444No 153>4bv4_R Protein TOLL, variable lymphocyte receptor B CHIM; cytokine recognition, embryonic development, immune system, immunity, leucine-rich repeats, cystine-knot; HET: NAG BMA MAN; 2.35A {Drosophila melanogaster} Probab=99.39 E-value=2.3e-12 Score=137.59 Aligned_cols=188 Identities=11% Similarity=0.032 Sum_probs=106.6 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++|+.|.+.+|.+... ....+..+++|++|++++|+++.++.. .+..+++|+.|+|++|.++.++. ..+ T Consensus 192 ~l~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~l~~~~l~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~-~~~ 262 (446) T 4bv4_R 192 KMPKLKQLNLWSNQLHNL------TKHDFEGATSVLGIDIHDNGIEQLPHD--VFAHLTNVTDINLSANLFRSLPQ-GLF 262 (446) T ss_dssp GCTTCCEEECCSSCCCCC------CGGGGTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSCCCSCCCT-TTT T ss_pred CcccCCEEECCCCCCCee------CHHHcCCCCCCCEEECCCCCCCEeCHH--HcCCCCCCCEEEccCCcCCccCh-hhh Confidence 456677777777766532 112236788899999999888876653 34778888888888888887763 356 Q ss_pred CCC-CccEEEeecCcCC--CcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCc------------ Q FBpp0305286 222 NKL-SCKTIFLAGNGLA--KLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGL------------ 284 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~--~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~------------ 284 (559) ..+ +|++|++++|.+. ..+.. ++..+++|+.|++ .+... +...+..+++|+.|.++++.+. T Consensus 263 ~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l-~~~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 340 (446) T 4bv4_R 263 DHNKHLNEVRLMNNRVPLATLPSR-LFANQPELQILRL-RAELQSLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVN 340 (446) T ss_dssp TTCTTCCEEEECCCSSCCCCCCTT-TTCSCSSCCEEEE-CSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT T ss_pred cccccCCEEEccCCCCcceecCHH-HhCCCCcceEEEc-CCCccccChhhhcCcccCCEeECCCCcCCccChhHhccCCC Confidence 777 8888888888753 33332 2455555555555 33221 2223344555555533222211 Q ss_pred ----cchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCC Q FBpp0305286 285 ----KFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 285 ----~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~ 342 (559) ++++|.++.++..... ++++|+.|++ +|.+..++.. +..++.|++|++++|++.+. T Consensus 341 L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 402 (446) T 4bv4_R 341 LLSLDLSNNRLTHLPDSLFA--HTTNLTDLRLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 402 (446) T ss_dssp CCEEECCSSCCCCCCTTTTS--SCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC T ss_pred CCEEECCCCcCcEeCHHHhc--CCcccCEEECCCCcCCccCHHHhccccCCcEEEccCCCcccc Confidence 3333333333322111 3555666666 4444444332 23455666666666666543No 154>4nkh_A E3 ubiquitin-protein ligase SSPH1; leucine-rich repeat, E3 ligase substrate interaction domain,; 2.75A {Salmonella enterica subsp} PDB: 4nkg_A Probab=99.38 E-value=4.7e-12 Score=124.42 Aligned_cols=156 Identities=17% Similarity=0.047 Sum_probs=119.9 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) .+++.|.+.+|.+..+. ..+++|++|+|++| .++.++. .+++|+.|++++|.++.++. T Consensus 57 ~~L~~L~l~~n~l~~l~----------~~~~~L~~L~l~~n~~i~~l~~------~~~~L~~L~l~~n~l~~l~~----- 115 (239) T 4nkh_A 57 PHITTLVIPDNNLTSLP----------ELPEGLRELEVSGNLQLTSLPS------LPQGLQKLWAYNNWLASLPT----- 115 (239) T ss_dssp TTCSEEEECSCCCSCCC----------CCCTTCCEEEECSCTTCCCCCC------CCTTCCEEECCSSCCSCCCC----- T ss_pred cCCCEEECcCCcccccc----------cccccCCEEECCCCCCcccccc------ccccCCEEECCCCcccCcCc----- Confidence 56777777777766331 26789999999999 8888765 57899999999999998773 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCc Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDT 301 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~ 301 (559) .+ +|++|++++|.+.+++. .+++|+.|++++|.+...+. .+++|+.| ++++|.++.++. T Consensus 116 ~~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~l~~n~l~~l~~--~~~~L~~L--------~l~~n~l~~l~~----- 175 (239) T 4nkh_A 116 LPPGLGDLAVSNNQLTSLPE-----MPPALRELRVSGNNLTSLPA--LPSGLQKL--------WAYNNRLTSLPE----- 175 (239) T ss_dssp CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCCCCC--CCTTCCEE--------ECCSSCCSCCCC----- T ss_pred cCCCCCEEECcCCccccccc-----cCCcCCEEECCCCcCCcCCc--ccccCCEE--------ECcCCcCCcccc----- Confidence 56 89999999999987653 45899999999997655433 67889999 555555555444 Q ss_pred ccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 302 EERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 302 ~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) ..++|+.|++ .|.+..++.....++.|++|++++|.+.. T Consensus 176 -~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~N~l~~ 215 (239) T 4nkh_A 176 -MSPGLQELDVSHNQLTRLPQSLTGLSSAARVYLDGNPLSV 215 (239) T ss_dssp -CCTTCCEEECCSSCCCSCCGGGGGCCTTCEEECCSCCCCH T ss_pred -ccCcCCEEECcCCCCcccCHHHhCCCCCCEEEccCCcCCC Confidence 2568999999 78888665556778899999999999873No 155>4l3a_A Internalin K, LMO1290 protein; leucine rich repeat, immune system evasion, major vault PROT invasion; 2.59A {Listeria monocytogenes} Probab=99.38 E-value=6.6e-13 Score=148.24 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=137.0 Q ss_pred ccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCc Q FBpp0305286 138 LDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGE 217 (559) Q Consensus 138 LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~ 217 (559) +....+.+|+.|.+.+|.+..+.. +..+++|+.|+|++|+|+.+.. +..+++|+.|+|++|+|.... T Consensus 73 i~~~~l~~L~~L~Ls~n~i~~l~~--------l~~l~~L~~L~Ls~n~l~~~~~----l~~l~~L~~L~Ls~n~l~~~~- 139 (590) T 4l3a_A 73 ITEAQMDSLTYITLANINVTDLTG--------IEYAHNIKDLTINNIHATNYNQ----ISGLSNLERLRIMGADVTSDK- 139 (590) T ss_dssp CBHHHHTTCCEEEEESSCCCCCTT--------GGGCTTCSEEEEESCCCSCCGG----GTTCTTCCEEEEECTTCBGGG- T ss_pred cCHHHcCCCCEEEccCCCCCCChh--------HhhCCCCCEEEeeCCcCCCchH----HccCCCCCEEEecCCcCCCcC- Confidence 344568889999999988775421 4789999999999999998443 388999999999999999743 Q ss_pred cCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCC-cCCCchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 218 LNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQ-LGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 218 l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N-~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) ...+..+ +|++|+|++|.+.+..+.. +..+++|+.|++++| .+.....+..+++|+.|++++ |.|..+. T Consensus 140 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~N~~l~~l~~l~~l~~L~~L~L~~--------n~l~~~~ 210 (590) T 4l3a_A 140 IPNLSGLTNLTLLDLSHSAHDDSILTK-INTLPKVTSIDLSYNGAITDIMPLKTMPELKSLNIQF--------DGVHDYR 210 (590) T ss_dssp SCCCTTCTTCCEEECCSSBCCGGGGGG-TTTCSSCCEEECTTCTTCCCCGGGGGCSSCCEEECTT--------CCCCBCT T ss_pred hhhhcCCCCCCEEECcCCcCCchhhhh-hhcCCCccEEECcCCCCcccchhhccCCCccEEECcC--------CCCCCch Confidence 2378889 9999999999999866665 889999999999999 666655588999999995544 4444443 Q ss_pred ccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) . +. .+++|+.|++ .|.+.... .......++.|++++|.+.. T Consensus 211 ~-l~---~l~~L~~L~L~~N~l~~~~-~~~~~~~l~~L~l~~n~~~~ 252 (590) T 4l3a_A 211 G-IE---DFPKLNTLLAYSQTIGGKK-LINSDIKSSKLTYNAENQTL 252 (590) T ss_dssp T-GG---GCSSCCEEECTTCEETSSS-CCEEEEEGGGSEEETTTTEE T ss_pred h-hc---cCCCCCEEEeECCcccCcc-ccccccccceeEEecCCCee Confidence 2 22 6899999999 66655432 23345677888888887764No 156>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} SCOP: b.1.18.0 c.10.2.0 PDB: 4cc4_A* Probab=99.38 E-value=1e-12 Score=131.49 Aligned_cols=120 Identities=19% Similarity=0.245 Sum_probs=69.5 Q ss_pred cCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCcc Q FBpp0305286 139 DLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGEL 218 (559) Q Consensus 139 dLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l 218 (559) .+..+.+++.|.+.+|.+..+. .+..+++|++|+|++|+|+.+++ +..+++|+.|+|++|+++.++. T Consensus 36 ~~~~l~~L~~L~l~~n~i~~~~--------~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~L~~n~l~~l~~- 102 (263) T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA--------GMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNRLKNLNG- 102 (263) T ss_dssp CHHHHTTCSEEECTTSCCCCCT--------TGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSCCSCCTT- T ss_pred ChhhcCcCcEEECCCCCceecc--------hhcccCCCCEEECcCCCCCcChh----hcCCCCCCEEECcCCccCCccc- Confidence 3345566666666666555321 12456666666666666666554 2566666666666666666553 Q ss_pred CccCCCCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccc Q FBpp0305286 219 NYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQL 276 (559) Q Consensus 219 ~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L 276 (559) +....|++|+|++|.+++. .. +..+++|+.|++++|.+.....+..+++|+.| T Consensus 103 --~~~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L 155 (263) T 1xeu_A 103 --IPSACLSRLFLDNNELRDT--DS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVL 155 (263) T ss_dssp --CCCSSCCEEECCSSCCSBS--GG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEE T ss_pred --cccCccCEEECCCCccCCc--hH-HccCCCCCEEECCCCCCCCChhHccCCCCCEE Confidence 2222466666666666662 22 56666666666666655444345566666666No 157>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Probab=99.38 E-value=7.8e-13 Score=145.82 Aligned_cols=156 Identities=20% Similarity=0.107 Sum_probs=88.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+|+.+++. .+.++++|+.|+|++|+++.+.. ..|.++ +|++|+|++|.+.+..+.. ++.++ T Consensus 49 ~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~ 124 (570) T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP-IGHLK 124 (570) T ss_dssp TTCSSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCS-CTTCT T ss_pred ccCCCccEEECCCCccccCChh--hhhccccCCEEeCCCCccccCCh-hhhcccccceEEecccCccccccccc-ccccC Confidence 5666777777777777665432 24666777777777777766542 356666 6777777777776665444 66677 Q ss_pred CccEEeCCCCcCCC---chhccCCCCcccccCCCCCCccchhhhhhhhcccccCccccccc----ccccc-ccceeeeec Q FBpp0305286 250 QLKNVHGCVQLGES---TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKL----KKYYD-DQAMFSLSV 321 (559) Q Consensus 250 ~L~~Ldl~~N~~~~---~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L----~~L~l-~N~l~sl~~ 321 (559) +|++|++++|.+.. +..+..+++|+.|++ ++|.++..+..... .+.+| ..|++ .|.+..++. T Consensus 125 ~L~~L~Ls~n~l~~~~lp~~~~~l~~L~~L~L--------s~n~l~~~~~~~l~--~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570) T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL--------SSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQP 194 (570) T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC--------TTSCCCEECGGGGH--HHHTCTTCCCEEECTTCCCCEECT T ss_pred cCCEEEccCCcccccchhhhhhcCCCCCEEec--------cCCcCcccCHHHhh--hhhhccccceeecccCCccceeCH Confidence 77777777765431 345666677777733 33333332211000 23333 25666 555555544 Q ss_pred CCcCccccceeecCCcccc Q FBpp0305286 322 PVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 322 ~~~~~~~L~~L~ls~N~i~ 340 (559) .......|+.|++++|.+. T Consensus 195 ~~~~~~~L~~L~l~~n~~~ 213 (570) T 2z63_A 195 GAFKEIRLHKLTLRNNFDS 213 (570) T ss_dssp TTTTTCEEEEEEEESCCSC T ss_pred HHhcccccceeeccccccc Confidence 3333346666777766554No 158>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 4m7e_A* 3riz_A* 3rj0_A* 4lsa_A* 4lsx_A* Probab=99.38 E-value=4.8e-13 Score=153.73 Aligned_cols=108 Identities=14% Similarity=-0.033 Sum_probs=64.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC-CCccCccCCC-CccEEEeecCcCCCcchhHHhccC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD-LGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKML 248 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~-l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~l 248 (559) ..+++|+.|+|++|+++...+. .+..+++|+.|+|++|+++. ++. .+.++ +|++|+|++|.+.+..+.. +..+ T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l 513 (768) T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKW-IGRL 513 (768) T ss_dssp GGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGG-GGGC T ss_pred hcCCCCCEEECcCCcccCcCCH--HHhCCCCCCEEECcCCcCcCcCCH--HHcCCCCCCEEECcCCCcCCccchH-HhcC Confidence 4556666666666666642221 13556666666666666663 332 45666 6777777777776655554 6667 Q ss_pred CCccEEeCCCCcCC--CchhccCCCCcccccCCCCCC Q FBpp0305286 249 PQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 249 p~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l 283 (559) ++|+.|++++|... .+..+..+++|+.|++++|.+ T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 550 (768) T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768) T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE T ss_pred CCCCEEECcCCcccccCCHHHhCCCCCCEEECCCCcc Confidence 77777777776542 334556667777775555543No 159>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Probab=99.38 E-value=2.1e-12 Score=135.49 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=83.9 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|.++.+++. .+..+++|+.|+|++|.++.++. ..+..+ +|++|++++|.+....+.. +..++ T Consensus 90 ~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 165 (390) T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDT-FQATT 165 (390) T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTT-TSSCT T ss_pred cccCcccEEECCCCccCcCCHH--HhccCCcCcEEECCCCcCCccCH-hHhcCCCCCCEEECCCCcCCccChHH-cCCcC Confidence 4556666666666666655432 23556666666666666665552 234555 6666666666666555444 55566 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +|+.|++++|..... .+..+++|+.| ++.+|.+..+. ..+.|+.|++ .|.+..++. ..++. T Consensus 166 ~L~~L~l~~n~l~~~-~~~~l~~L~~L--------~l~~n~l~~~~-------~~~~L~~L~l~~n~~~~~~~--~~~~~ 227 (390) T 3o6n_A 166 SLQNLQLSSNRLTHV-DLSLIPSLFHA--------NVSYNLLSTLA-------IPIAVEELDASHNSINVVRG--PVNVE 227 (390) T ss_dssp TCCEEECCSSCCSBC-CGGGCTTCSEE--------ECCSSCCSEEE-------CCSSCSEEECCSSCCCEEEC--CCCSS T ss_pred CCCEEECCCCccccc-CccccCccCEE--------ecccccccccC-------CCcceeEEECCCCceeeecC--ccCCc Confidence 666666666544332 23445556666 33333333221 2446667777 666655532 34567 Q ss_pred cceeecCCccccCC Q FBpp0305286 329 YGYKLYNRNQKRQH 342 (559) Q Consensus 329 L~~L~ls~N~i~~~ 342 (559) |+.|++++|.+... T Consensus 228 L~~L~l~~n~l~~~ 241 (390) T 3o6n_A 228 LTILKLQHNNLTDT 241 (390) T ss_dssp CCEEECCSSCCCCC T ss_pred ccEEECCCCCCCCc Confidence 88888888877654No 160>4l3f_A Internalin K, LMO1290 protein; leucine rich repeat, immune system evasion, major vault PROT invasion; 2.39A {Listeria monocytogenes} Probab=99.37 E-value=2.2e-13 Score=142.11 Aligned_cols=155 Identities=11% Similarity=0.076 Sum_probs=126.4 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) +.+++|++|+|++|.|+.++. +..+++|+.|+|++|.++.++ .+.++ +|++|+|++|.+.+..+.. +..++ T Consensus 54 ~~l~~L~~L~l~~n~l~~l~~----l~~l~~L~~L~L~~n~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 125 (347) T 4l3f_A 54 AQMDSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYN---QISGLSNLERLRIMGADVTSDKIPN-LSGLT 125 (347) T ss_dssp HHHHHCCEEEEESCCCSCCTT----GGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEEEEEEEGGGSCC-CTTCT T ss_pred HHCCCCCEEEeeCCCCCCChh----HhcCCCCCEEEccCCCCCCch---HHcCCCCCCEEEeeCCccCCccchh-hhcCC Confidence 456789999999999999884 378999999999999887665 57888 9999999999999865555 88999 Q ss_pred CccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhh-hhhhcccccCcccccccccccc-ccceeeeecCCcC Q FBpp0305286 250 QLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDF-ISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQL 325 (559) Q Consensus 250 ~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~-L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~ 325 (559) +|+.|+++.|.+.. +..+..+++|+.| ++++|. +..++ .+. .+++|+.|++ .|.+..++ +... T Consensus 126 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--------~L~~N~~~~~i~-~l~---~l~~L~~L~L~~n~l~~~~-~l~~ 192 (347) T 4l3f_A 126 NLTLLDLSHSAHDDSILTKINTLPKVTSI--------DLSYNGAITDIM-PLK---TMPELKSLNIQFDGVHDYR-GIED 192 (347) T ss_dssp TCCEEECCSEECBGGGGGGTTTCSSCCEE--------ECTTCTBCCCCG-GGG---GCSSCCEEECTTSCCCBCT-TGGG T ss_pred CCCEEEccCCcCCchhhhHhhCCCCCCEE--------ECCCCCCccchh-hhc---cCCCCCEEEeeCCCCCCch-hhhc Confidence 99999999997654 5678899999999 555554 44444 332 6899999999 78777763 5677 Q ss_pred ccccceeecCCccccCCChhh Q FBpp0305286 326 NYVYGYKLYNRNQKRQHSSFA 346 (559) Q Consensus 326 ~~~L~~L~ls~N~i~~~~~~~ 346 (559) ++.|++|++++|.++....+. T Consensus 193 l~~L~~L~L~~N~l~~~~~~~ 213 (347) T 4l3f_A 193 FPKLNTLLAYSQTIGGKKLIN 213 (347) T ss_dssp SSSCCEEECTTCEETSSSCCE T ss_pred CCCCCEEEeECCccCChhhhh Confidence 899999999999998654333No 161>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Probab=99.37 E-value=7.8e-13 Score=148.10 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=131.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|+.|+|++|.|..++.+ ..+++|+.|+|++|+|+.++. +..+ +|++|+|++|.+..... +..++ T Consensus 40 ~~l~~L~~L~l~~~~i~~l~~l----~~l~~L~~L~Ls~n~i~~~~~---l~~l~~L~~L~Ls~n~l~~l~~---l~~l~ 109 (605) T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGI----QYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSS---LKDLK 109 (605) T ss_dssp HHHTTCCCCBCTTCCCCCCTTG----GGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTT---STTCT T ss_pred hhCCCCCEEECcCCCCCCChhH----ccCCCCCEEEeeCCCCCCChh---hccCCCCCEEEccCCCCCCChh---hccCC Confidence 4678999999999999998854 789999999999999998874 7888 99999999999998752 88999 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +|+.|+++.|.+...+.+..+++|+.|++++|.+. ..+ .+. .+++|+.|++ .|.+..++. ...++. T Consensus 110 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~--------~~~-~l~---~l~~L~~L~Ls~N~l~~~~~-l~~l~~ 176 (605) T 1m9s_A 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT--------DIT-VLS---RLTKLDTLSLEDNQISDIVP-LAGLTK 176 (605) T ss_dssp TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC--------CCG-GGG---SCTTCSEEECCSSCCCCCGG-GTTCTT T ss_pred CCCEEECcCCCCCCCccccCCCCCCEEECCCCCCC--------Cch-HHh---cCCCCCEEEecCCcCCCchh-hcccCC Confidence 99999999998877777889999999955555444 332 222 6899999999 787777654 778899 Q ss_pred cceeecCCccccCCChhhhhhhhhhh Q FBpp0305286 329 YGYKLYNRNQKRQHSSFAQNAKLQVG 354 (559) Q Consensus 329 L~~L~ls~N~i~~~~~~~rl~~L~~g 354 (559) |+.|++++|.+.....+..+..|... T Consensus 177 L~~L~Ls~N~i~~~~~l~~l~~L~~L 202 (605) T 1m9s_A 177 LQNLYLSKNHISDLRALAGLKNLDVL 202 (605) T ss_dssp CCEEECCSSCCCBCGGGTTCTTCSEE T ss_pred CCEEECCCCCCCCChhhcCCCCCCEE Confidence 99999999999876555555555443No 162>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Probab=99.37 E-value=5.9e-13 Score=135.85 Aligned_cols=153 Identities=18% Similarity=0.100 Sum_probs=76.9 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC---------------ccCCC-CccEEEeecC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN---------------YINKL-SCKTIFLAGN 234 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~---------------~l~~l-~L~~L~L~~N 234 (559) ..+++|++|+|++|+++.+++ +..+++|+.|+|++|.++.++... ....+ +|++|++++| T Consensus 55 ~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 130 (317) T 3o53_A 55 APFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (317) T ss_dssp TTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS T ss_pred hCCCCCCEEECcCCcCCCCcc----ccccCcCCEEECCCCccCcccCCCCcCEEECCCCcccccchhhCCCCCEEECcCC Confidence 445555555555555554333 244555555555555544333100 01223 5666666666 Q ss_pred cCCCcchhHHhccCCCccEEeCCCCcCCCc--hh-ccCCCCcccccCCCCCCccchhhhhhhhcccccCccccccccccc Q FBpp0305286 235 GLAKLSVDVIRKMLPQLKNVHGCVQLGEST--EA-VDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYY 311 (559) Q Consensus 235 ~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~--~~-~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~ 311 (559) .+.+..... +..+++|+.|++++|.+... .. +..+++|+.| ++++|.+...+... .+++|+.|+ T Consensus 131 ~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L--------~l~~n~l~~~~~~~----~~~~L~~L~ 197 (317) T 3o53_A 131 KITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL--------NLQYNFIYDVKGQV----VFAKLKTLD 197 (317) T ss_dssp CCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE--------ECTTSCCCEEECCC----CCTTCCEEE T ss_pred CCCCcchhh-hhhcCCccEEECcCCcCCccchhhhhhhcCcCCEE--------ECCCCccccccccc----cCCCCCEEE Confidence 665554433 55566666666666644321 12 2445666666 33333333332211 355666666 Q ss_pred c-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 312 D-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 312 l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) + .|.+..++.....++.|++|++++|.+. T Consensus 198 l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 227 (317) T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (317) T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCC T ss_pred CcCCcCCCCccchhhcCCCCEEECCCCccc Confidence 6 5555555444455566666666666655No 163>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Probab=99.37 E-value=1.9e-12 Score=142.07 Aligned_cols=153 Identities=17% Similarity=0.077 Sum_probs=97.7 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+|+.+.+. .+.++++|+.|+|++|+|+.+.+ ..|.++ +|++|+|++|.+.+.++.. ++.+++|+ T Consensus 26 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 101 (549) T 2z81_A 26 AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLK 101 (549) T ss_dssp TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCC T ss_pred cCCCEEEccCCCcceeCHh--hhhccccCCEEECCCCccCccCH-hhccCCCccCEEECcCCcCcccCHHH-hccCCCCC Confidence 4677777777777776432 24677777777777777776642 356677 7777777777777766655 67777777 Q ss_pred EEeCCCCcCCC---chhccCCCCcccccCCCCCCccchh-hhhhhhcccccCcccccccccccc-ccceeeeec-CCcCc Q FBpp0305286 253 NVHGCVQLGES---TEAVDNIPKSQQLQGGGTNGLKFCQ-DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSV-PVQLN 326 (559) Q Consensus 253 ~Ldl~~N~~~~---~~~~~~lp~Lk~L~l~~~~l~~L~~-n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~~ 326 (559) +|++++|.+.. +..+..+++|+.| ++++ |.+..++..... ++++|+.|++ .|.+..... ....+ T Consensus 102 ~L~Ls~N~l~~~~~p~~~~~l~~L~~L--------~L~~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l 171 (549) T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTL--------RIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSI 171 (549) T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEE--------EEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTC T ss_pred EEECCCCcccccCccccccccccCeEE--------ecCCcccccccchhhcc--ccccccEEEcccCCccccchhhhhhc Confidence 77777775432 2456677777777 5555 555555443111 5677777777 666555432 23455 Q ss_pred cccceeecCCcccc Q FBpp0305286 327 YVYGYKLYNRNQKR 340 (559) Q Consensus 327 ~~L~~L~ls~N~i~ 340 (559) +.|+.|++++|.+. T Consensus 172 ~~L~~L~l~~n~~~ 185 (549) T 2z81_A 172 RDIHHLTLHLSESA 185 (549) T ss_dssp SEEEEEEEECSBST T ss_pred cccceEeecCCchH Confidence 66677777766543No 164>4k5u_B Variable lymphocyte receptor; leucine rich repeat, antigen receptor, FUC-alpha(1-2)beta-GA system; HET: GAL; 1.70A {Petromyzon marinus} PDB: 4k79_A* Probab=99.37 E-value=2.6e-12 Score=124.82 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=46.0 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+|+.++.. .+.++++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+....... +..++ T Consensus 51 ~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~ 126 (220) T 4k5u_B 51 DRLANLRELHLWGNQLVSLPPG--VFDNLANLEKLWLNSNQLTSLPA-GLFDRLVNLEHLGLCCMKLTELPSGA-FDKLT 126 (220) T ss_dssp TTCTTCSEEECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCT T ss_pred hccCCCCEEECCCCcCCccCHh--HccCCCCCCEEECCCCcCCeeCH-hHcCCCcCCCEEECCCCcCCccChhH-hcCCc Confidence 3444445555555544444332 22444444555555554444442 233444 4455555555444444333 44444 Q ss_pred CccEEeCCCCcCCC--chhccCCCCcccccC Q FBpp0305286 250 QLKNVHGCVQLGES--TEAVDNIPKSQQLQG 278 (559) Q Consensus 250 ~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l 278 (559) +|+.|++++|.+.. ...+..+++|+.|++ T Consensus 127 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 157 (220) T 4k5u_B 127 RLKQLGLDQNQLKSIPDGAFARLPSLTHVWL 157 (220) T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC T ss_pred cCCEEECCCCcCCeECHHHHhCCCCCCEEEc Confidence 44555544443321 123344444444433No 165>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} SCOP: c.10.2.0 Probab=99.36 E-value=2.7e-12 Score=124.79 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=88.9 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) +.+++|+|++|+|+.++... .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+.+..+.. +..+++|+ T Consensus 32 ~~l~~L~L~~n~i~~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 108 (220) T 2v70_A 32 QYTAELRLNNNEFTVLEATG-IFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENVQHKM-FKGLESLK 108 (220) T ss_dssp TTCSEEECCSSCCCEECCCC-CGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCGGG-GTTCSSCC T ss_pred CCCCEEEeCCCccCccCCcc-ccccCCCCCEEECCCCcCCEeCh-hhccCCCCCCEEECCCCccCcCCHhh-CCCCcCCC Confidence 46788888888888776421 24677888888888888887763 467777 8888888888888777665 77788888 Q ss_pred EEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccce Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAM 316 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l 316 (559) .|++++|.+.. ...+..+++|+.| ++++|.++.+.. .+. .+++|+.|++ +|.+ T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L--------~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~~ 165 (220) T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLL--------SLYDNQITTVAPGAFD---TLHSLSTLNLLANPF 165 (220) T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEE--------ECTTSCCCCBCTTTTT---TCTTCCEEECCSCCE T ss_pred EEECCCCccceeCHhHccCCCCCCEE--------ECCCCccceECHHHHh---cCCCCCEEEecCcCC Confidence 88888876543 3456677888888 555555554422 232 5777888888 4443No 166>4cil_A YOPM-CAP, internalin B; signaling protein, capping, fusion protein, LRR, protein CHI protein design, protein engineering; 1.50A {Yersinia enterocolitica} Probab=99.36 E-value=3.4e-12 Score=128.70 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=120.9 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) .+|++|++++|.++.++.+ ..+++|+.|+|++|.++.++. +..+ +|++|+|++|.+..... +..+++|+ T Consensus 42 ~~l~~L~l~~~~l~~l~~~----~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 111 (287) T 4cil_A 42 RQAHELELNNLGLSSLPGI----QYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSS---LKDLKKLK 111 (287) T ss_dssp TTCSEEECTTSCCSCCCCC----CCCTTCCEEECTTCCCSCCGG---GTTCTTCCEEECTTCCCCCCGG---GTTCTTCC T ss_pred hcCCEEEccCCCCCcChhH----hcCCCCCEEEeeCCCCccccc---hhcCCCCCEEECcCCccCCchh---hcCCCCCC Confidence 7899999999999998854 789999999999999998874 7888 99999999999988654 78999999 Q ss_pred EEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccce Q FBpp0305286 253 NVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGY 331 (559) Q Consensus 253 ~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~ 331 (559) .|++++|.+...+.+..+++|+.|++++| .+.... .+. .+++|+.|++ +|.+..+.. ...++.|++ T Consensus 112 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n--------~l~~~~-~~~---~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 178 (287) T 4cil_A 112 SLSLEHNGISDINGLVHLPQLESLYLGNN--------KITDIT-VLS---RLTKLDTLSLEDNQISDIVP-LAGLTKLQN 178 (287) T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSS--------CCCCCG-GGG---GCTTCSEEECCSSCCCCCGG-GTTCTTCCE T ss_pred EEEccCCcCCccccccCCCCCCEEECCCC--------CCCcch-hhc---CCCCCCEEECCCCcccCchh-hccCCcCCE Confidence 99999998776667888999999955555 444432 222 5889999999 777766543 667899999 Q ss_pred eecCCccccCC Q FBpp0305286 332 KLYNRNQKRQH 342 (559) Q Consensus 332 L~ls~N~i~~~ 342 (559) |++++|.+... T Consensus 179 L~l~~n~l~~~ 189 (287) T 4cil_A 179 LYLSKNHISDL 189 (287) T ss_dssp EECCSSCCCBC T ss_pred EEeeCCCCCCC Confidence 99999988753No 167>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Probab=99.36 E-value=3.3e-12 Score=124.98 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=69.0 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+|+.+.+. .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.+....... +..+++|+ T Consensus 40 ~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 115 (229) T 3e6j_A 40 TNAQILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVLPSAV-FDRLVHLK 115 (229) T ss_dssp TTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC T ss_pred CCCeEEECCCCccCeeCHH--HcccCcCCCEEECCCCCCCccCH-hHcCCCcCCCEEECCCCcCceeCHhH-hCcccccC Confidence 5566666666666665432 23556666666666666666552 345556 6666666666666655543 55666666 Q ss_pred EEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc Q FBpp0305286 253 NVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD 312 (559) Q Consensus 253 ~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l 312 (559) .|++++|.+... ..+..+++|+.| ++++|.++.++..... .+++|+.|++ T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L--------~L~~N~l~~~~~~~~~--~l~~L~~L~l 166 (229) T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHL--------ALDQNQLKSIPHGAFD--RLSSLTHAYL 166 (229) T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEE--------ECCSSCCCCCCTTTTT--TCTTCCEEEC T ss_pred eeEccCCcCcccChhhcccccCCEE--------ECCCCccCccCHHHHh--cCCCCCEEEe Confidence 666666644322 334556666666 3333333333321111 4566666666No 168>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Probab=99.36 E-value=3e-12 Score=131.19 Aligned_cols=174 Identities=16% Similarity=0.083 Sum_probs=129.8 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .+++.|.+.+|.+... ....+..+++|++|+|++|+++.+.+. .+.++++|+.|+|++|+++.++. .+. T Consensus 54 ~~L~~L~l~~~~l~~~------~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~- 122 (332) T 2ft3_A 54 PDTTLLDLQNNDISEL------RKDDFKGLQHLYALVLVNNKISKIHEK--AFSPLRKLQKLYISKNHLVEIPP--NLP- 122 (332) T ss_dssp TTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCSSCCCEECGG--GSTTCTTCCEEECCSSCCCSCCS--SCC- T ss_pred CCceEEECCCCccCcc------CHHHhcCCCCCCEEECCCCcCCCcCHH--HhcCCCCcCEeECCCCCCCccCh--hhc- Confidence 5677777777776632 112347889999999999999987432 35889999999999999998874 121 Q ss_pred CCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC----CchhccCCCCcccccCCCCCCccchhhhhhhhccccc Q FBpp0305286 224 LSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE----STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFD 299 (559) Q Consensus 224 l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~----~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d 299 (559) .+|++|++++|.+....... +..+++|+.|++++|... ....+..+ +|+.| ++++|.+..++.. T Consensus 123 ~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-~L~~L--------~l~~n~l~~~~~~-- 190 (332) T 2ft3_A 123 SSLVELRIHDNRIRKVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL--------RISEAKLTGIPKD-- 190 (332) T ss_dssp TTCCEEECCSSCCCCCCSGG-GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC--------BCCSSBCSSCCSS-- T ss_pred CchhEEECCCCCcccCCHhH-hhcccccCEEECCCCcccccccCccccccc-eeeEE--------ECcCCccCcCChh-- Confidence 48999999999999987765 889999999999998653 23333333 79999 5556666554443 Q ss_pred Ccccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCC Q FBpp0305286 300 DTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHS 343 (559) Q Consensus 300 ~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~ 343 (559) -.++|+.|++ +|.+...... ...++.|++|++++|.+.... T Consensus 191 ---~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 233 (332) T 2ft3_A 191 ---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332) T ss_dssp ---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC T ss_pred ---hhhhCcEEECcCCccCccCHhHhccCCCcCEEECCCCcCCeeC Confidence 2368999999 7777776533 467789999999999987543No 169>4mn8_A LRR receptor-like serine/threonine-protein kinase; FLS2, BAK1, flagellin, plant immunity, leucine-rich R transferase-transferase receptor complex; HET: NAG; 3.06A {Arabidopsis thaliana} PDB: 4mna_A* Probab=99.35 E-value=8.2e-13 Score=152.12 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=123.5 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCC-CcCccccccCCCCCCEEeCCCCCCC-CCCcc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCS-LKAFAGNSQSFASLERLDISANRIQ-DLGEL 218 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~-l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l 218 (559) .++.+|+.|.+.+|.+.. .++. .+.++++|++|+|++|.++. ++.. +..+++|+.|+|++|.++ .+++ T Consensus 93 ~~l~~L~~L~L~~n~~~g--~ip~----~l~~l~~L~~LdLs~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~- 162 (782) T 4mn8_A 93 GKLTELNQLILYLNYFSG--SIPS----GIWELKNIFYLDLRNNLLSGDVPEE---ICKTSSLVLIGFDYNNLTGKIPE- 162 (782) T ss_dssp GGCCSCCEEECCSSCCBS--BCCG----GGGGCSSCCEEECCSSCCBSBCCGG---GGGCTTCCEEECCSSCCBSBCCT- T ss_pred hccCCCCEEECcCCcccC--cCCh----hHcCCCCCCEEECcCCccCCcCChh---HccCCCCCEEECcCccccccCCh- Confidence 345666666666665541 1111 22567777777777777764 3322 467777777777777777 3443 Q ss_pred CccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhh-h Q FBpp0305286 219 NYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISS-Y 294 (559) Q Consensus 219 ~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~-~ 294 (559) .+.++ +|++|++++|.+.+..+.. ++.+++|++|+++.|... .+..+..+++|+.| ++..|.+.. . T Consensus 163 -~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L--------~L~~n~l~~~~ 232 (782) T 4mn8_A 163 -CLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSL--------VLTENLLEGDI 232 (782) T ss_dssp -TGGGCTTCSEEECCSSCCBSBCCGG-GGGCTTCCEEECCSSCCBSCCCGGGGGCSSCCEE--------ECCSSCCCSBC T ss_pred -HHccCCCCCEEECcCCcccccCChh-HcccCCCCEEECCCCccCCCCChHHhCCCCCCEE--------ECcCCeeeccC Confidence 66777 7888888888887766555 778888888888887543 34567778888888 444554443 2 Q ss_pred cccccCcccccccccccc-cccee-eeecCCcCccccceeecCCccccC--CChhhhhhhhhhh Q FBpp0305286 295 YTFFDDTEERFKLKKYYD-DQAMF-SLSVPVQLNYVYGYKLYNRNQKRQ--HSSFAQNAKLQVG 354 (559) Q Consensus 295 ~~~~d~~~~l~~L~~L~l-~N~l~-sl~~~~~~~~~L~~L~ls~N~i~~--~~~~~rl~~L~~g 354 (559) +..+. ++++|+.|++ .|.+. .++.....++.|++|++++|.+.. +..+..+..|... T Consensus 233 p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 293 (782) T 4mn8_A 233 PAEIG---NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHL 293 (782) T ss_dssp CGGGG---GCTTCSEEECCSSCCBSBCCGGGGGCCSCCEEECCSSCCBSBCCGGGGGCCSCSEE T ss_pred ChHHh---cCCCCCEEECcCCCcCCcCChHHhCCCCCCEEECcCCcccccCChHHhcccCCCee Confidence 33332 6888999999 66554 233334667889999999998863 3445555554443No 170>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Probab=99.35 E-value=2.9e-12 Score=140.98 Aligned_cols=158 Identities=12% Similarity=0.040 Sum_probs=82.0 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCcc-CccCCC-CccEEEeecCcCCC-cchhHHhccC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGEL-NYINKL-SCKTIFLAGNGLAK-LSVDVIRKML 248 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l-~~l~~l-~L~~L~L~~N~l~~-~~~~~il~~l 248 (559) .+++|++|++++|+++..... .+..+++|+.|+|++|+++.++.. ..+.++ +|++|+|++|.+.+ ..... +..+ T Consensus 351 ~~~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l 427 (562) T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQ--GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT-CAWA 427 (562) T ss_dssp SCCCCCEEECCSSCCCTTTTT--TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CCCC T ss_pred CCCCceEEECCCCCCCccchh--HhccCCCCCEEECCCCCCCchhhhhhhhccCCcCCEEECcCCCCCCccChhh-hcCc Confidence 344455555555554432111 124445555555555555443321 123444 45555555555544 22222 4445 Q ss_pred CCccEEeCCCCcCCCchhccCC-CCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeec-CCcC Q FBpp0305286 249 PQLKNVHGCVQLGESTEAVDNI-PKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSV-PVQL 325 (559) Q Consensus 249 p~L~~Ldl~~N~~~~~~~~~~l-p~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~-~~~~ 325 (559) ++|+.|++++|..... .+..+ ++|+.| ++++|.++.++..+. ++++|+.|++ +|.+.+++. .... T Consensus 428 ~~L~~L~L~~n~l~~~-~~~~l~~~L~~L--------~l~~n~l~~l~~~~~---~l~~L~~L~l~~n~l~~l~~~~l~~ 495 (562) T 3a79_B 428 ESILVLNLSSNMLTGS-VFRCLPPKVKVL--------DLHNNRIMSIPKDVT---HLQALQELNVASNQLKSVPDGVFDR 495 (562) T ss_dssp TTCCEEECCSSCCCGG-GGSSCCTTCSEE--------ECCSSCCCCCCTTTT---SSCCCSEEECCSSCCCCCCTTSTTT T ss_pred CCCCEEECCCCCCCcc-hhhhhcccCCEE--------ECCCCchhhhHhhhh---cCCCCCEEECCCCcCCCCCHHHhhc Confidence 5555555555433211 12222 355555 455555555555433 5788888888 777776654 3456 Q ss_pred ccccceeecCCccccCCCh Q FBpp0305286 326 NYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 326 ~~~L~~L~ls~N~i~~~~~ 344 (559) ++.|++|++++|++.+.+. T Consensus 496 l~~L~~L~l~~N~~~~~c~ 514 (562) T 3a79_B 496 LTSLQYIWLHDNPWDCTCP 514 (562) T ss_dssp CTTCCCEECCSCCBCCCHH T ss_pred cCCCCEEEecCCccccccC Confidence 6788888888888887654No 171>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} SCOP: c.10.2.0 PDB: 2v9s_A Probab=99.35 E-value=2.9e-12 Score=124.62 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=52.0 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|+.|+|++|+|+.++.. .+..+++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.+..++... +..+++|+ T Consensus 32 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~-f~~l~~L~ 107 (220) T 2v9t_B 32 ETITEIRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSL-FEGLFSLQ 107 (220) T ss_dssp TTCCEEECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCCCCCCTTT-TTTCTTCC T ss_pred CCCCEEEcCCCcCcccCHH--HhhCCCCCCEEECCCCcCCccCH-HHhCCCccCCEEECCCCcCCcCCHhH-cCCCcccc Confidence 3555555555555555432 23455555555555555555431 245555 5555555555555554433 45555555 Q ss_pred EEeCCCCcCCC--chhccCCCCcccc Q FBpp0305286 253 NVHGCVQLGES--TEAVDNIPKSQQL 276 (559) Q Consensus 253 ~Ldl~~N~~~~--~~~~~~lp~Lk~L 276 (559) .|++++|.+.. ...+..+++|+.| T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220) T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLL 133 (220) T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEE T ss_pred eeecCCCCcCEECHHHhcCCCCCCEE Confidence 55555554322 2344555555555No 172>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Probab=99.35 E-value=6e-12 Score=135.91 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=122.1 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+++|+.|.+.+|.+..+ .+..+++|++|+|++|+|+.++ +..+++|+.|+|++|+++.++ T Consensus 60 ~~~l~~L~~L~Ls~n~l~~~---------~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~L~~n~l~~~~--- 122 (457) T 3bz5_A 60 IEKLTGLTKLICTSNNITTL---------DLSQNTNLTYLACDSNKLTNLD-----VTPLTKLTYLNCDTNKLTKLD--- 122 (457) T ss_dssp GGGCTTCSEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECCSSCCSCCC--- T ss_pred hhcCCCCCEEECcCCcccee---------CcccCCCCCEEECcCCccceee-----CCCCCcCCEEECCCCcCceEC--- Confidence 45667777777777766643 1367788888888888888764 267888888888888887763 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchh---------- Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQ---------- 288 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~---------- 288 (559) +..+ +|++|++++|.+++.. +..+++|+.|+++.|.......+..+++|+.|++++|.+..+.- T Consensus 123 -~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~l~l~~~~~l~~l~ 197 (457) T 3bz5_A 123 -VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197 (457) T ss_dssp -CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEE T ss_pred -hhhCCCCCEEECCCCcCceee----ccCCCcCCEEEccCCCccccccccccccCCEEECCCCCcceEECCCCcccCEEe Confidence 5677 8888888888887763 67788888888888754433336777888888777666554331 Q ss_pred ---hhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 289 ---DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 289 ---n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) |.++.+. + .++++|+.|++ .|.+..++ ...++.|++|++++|.++. T Consensus 198 l~~n~l~~l~--l---~~~~~L~~L~L~~n~l~~i~--~~~l~~L~~L~L~~n~l~~ 247 (457) T 3bz5_A 198 CDTNNITKLD--L---NQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE 247 (457) T ss_dssp CCSSCCSCCC--C---TTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC T ss_pred CCCCccCeec--C---CCCCcCCEEECCCCCccccc--cccCCccCEEEccCCcCce Confidence 1111110 1 14688899999 77776654 6677889999999998875No 173>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Probab=99.34 E-value=3.1e-12 Score=140.82 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=72.4 Q ss_pred EcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEE Q FBpp0305286 102 VTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLV 180 (559) Q Consensus 102 v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~ 180 (559) ..| .+++..+.++++.+.++.+ ..-.++++++|+.|.+.+|.+... ....+.++++|++|+ T Consensus 45 ~ip~~~~~~L~~L~Ls~n~i~~~------------~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~ 106 (562) T 3a79_B 45 HVPKDLPPRTKALSLSQNSISEL------------RMPDISFLSELRVLRLSHNRIRSL------DFHVFLFNQDLEYLD 106 (562) T ss_dssp SCCTTSCTTCCEEECCSSCCCCC------------CGGGTTTCTTCCEEECCSCCCCEE------CTTTTTTCTTCCEEE T ss_pred cCCCCCCccccEEECcCCccccc------------cHHHcccchhhheeeCCCCccCCc------ChhhhcccccCCEEE Confidence 344 5666677778777766432 112355667777777777766532 112336677777777 Q ss_pred ccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCC Q FBpp0305286 181 LSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAK 238 (559) Q Consensus 181 Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~ 238 (559) |++|+|+.++.. . +++|+.|+|++|+++.++....+.++ +|++|++++|.+.+ T Consensus 107 Ls~n~l~~l~~~----~-l~~L~~L~L~~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562) T 3a79_B 107 VSHNRLQNISCC----P-MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562) T ss_dssp CTTSCCCEECSC----C-CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT T ss_pred CCCCccCccccc----c-ccccceeccCCCcccccccchhhcccccccccccccCcccc Confidence 777777776654 1 77777777777777754322356667 77777777777664No 174>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 4m7e_A* 3riz_A* 3rj0_A* 4lsa_A* 4lsx_A* Probab=99.34 E-value=1.5e-12 Score=149.67 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=85.5 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC-CCCccCc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ-DLGELNY 220 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~ 220 (559) .+.+|+.|.+.+|.+.. .+...+..+++|++|+|++|+++...+. .+..+++|+.|+|++|+++ .++. . T Consensus 440 ~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~--~ 509 (768) T 3rgz_A 440 SLSKLRDLKLWLNMLEG------EIPQELMYVKTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPK--W 509 (768) T ss_dssp GCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCG--G T ss_pred cCCCCCEEECcCCcccC------cCCHHHhCCCCCCEEECcCCcCcCcCCH--HHcCCCCCCEEECcCCCcCCccch--H Confidence 35566666666666542 1222346889999999999999964332 2578999999999999999 4554 6 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcC Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~ 261 (559) +..+ +|++|+|++|++.+..+.. +..+++|+.|++++|.. T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l 550 (768) T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLF 550 (768) T ss_dssp GGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEE T ss_pred HhcCCCCCEEECcCCcccccCCHH-HhCCCCCCEEECCCCcc Confidence 8888 9999999999999877766 89999999999999954No 175>1o6v_A Internalin A; cell adhesion, bacterial infection, extracellular recognitio WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Probab=99.34 E-value=6.6e-12 Score=135.34 Aligned_cols=148 Identities=15% Similarity=0.206 Sum_probs=67.4 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|+.|++++|.+..+++. ..+++|+.|+|++|+++.++ .+..+ +|++|++++|.+.+..+ +..++ T Consensus 196 ~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~~~ 265 (466) T 1o6v_A 196 AKLTNLESLIATNNQISDITPL----GILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISNLAP---LSGLT 265 (466) T ss_dssp GGCTTCSEEECCSSCCCCCGGG----GGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GTTCT T ss_pred ccCCCCCEEECCCCcCCCCccc----ccCCccCEEEeeCcccCChh---HHhcCCCCCEEECCCCCcccChh---hccCC Confidence 3444555555555555444332 34455555555555544442 24444 55555555555544433 44455 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) +|+.|++++|.......+..+++|+.|++ .+|.+..... +. .+++|+.|++ +|.+.... +...++. T Consensus 266 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~l--------~~n~l~~~~~-~~---~l~~L~~L~l~~n~l~~~~-~~~~l~~ 332 (466) T 1o6v_A 266 KLTELKLGANQISNISPLAGLTALTNLEL--------NENQLEDISP-IS---NLKNLTYLTLYFNNISDIS-PVSSLTK 332 (466) T ss_dssp TCSEEECCSSCCCCCGGGTTCTTCSEEEC--------CSSCCSCCGG-GG---GCTTCSEEECCSSCCSCCG-GGGGCTT T ss_pred CCCEEECCCCccCCccccCCCcCCCEEEC--------CCCccCCccc-cc---cCCcCCEEEeeCCccCCCc-ccccCCC Confidence 55555555554333333444555555522 2222222222 11 3455555555 44433332 2344455 Q ss_pred cceeecCCccccC Q FBpp0305286 329 YGYKLYNRNQKRQ 341 (559) Q Consensus 329 L~~L~ls~N~i~~ 341 (559) |+.|++++|.+.. T Consensus 333 L~~L~l~~n~l~~ 345 (466) T 1o6v_A 333 LQRLFFYNNKVSD 345 (466) T ss_dssp CCEEECCSSCCCC T ss_pred CCEEECcCCccCC Confidence 5555555555543No 176>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} SCOP: b.1.18.0 c.10.2.0 PDB: 4cc4_A* Probab=99.34 E-value=4.7e-12 Score=126.64 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=121.4 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|++++|+|+.++.+ ..+++|+.|+|++|+|+.++. +..+ +|++|+|++|.+.+.... . .. T Consensus 38 ~~l~~L~~L~l~~n~i~~~~~~----~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~L~~n~l~~l~~~---~-~~ 106 (263) T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGM----QFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGI---P-SA 106 (263) T ss_dssp HHHTTCSEEECTTSCCCCCTTG----GGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTC---C-CS T ss_pred hhcCcCcEEECCCCCceecchh----cccCCCCEEECcCCCCCcChh---hcCCCCCCEEECcCCccCCcccc---c-cC Confidence 3678999999999999998854 789999999999999998874 7888 999999999999886532 2 22 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV 328 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~ 328 (559) .|+.|++++|.+..+..+..+++|+.| ++++|.++.... +. .+++|+.|++ .|.+..+ .....++. T Consensus 107 ~L~~L~L~~n~l~~~~~l~~l~~L~~L--------~L~~n~l~~~~~-l~---~l~~L~~L~L~~N~l~~~-~~l~~l~~ 173 (263) T 1xeu_A 107 CLSRLFLDNNELRDTDSLIHLKNLEIL--------SIRNNKLKSIVM-LG---FLSKLEVLDLHGNEITNT-GGLTRLKK 173 (263) T ss_dssp SCCEEECCSSCCSBSGGGTTCTTCCEE--------ECTTSCCCBCGG-GG---GCTTCCEEECTTSCCCBC-TTSTTCCC T ss_pred ccCEEECCCCccCCchHHccCCCCCEE--------ECCCCCCCCChh-Hc---cCCCCCEEECCCCcccCc-hHHcccCC Confidence 399999999987777888899999999 555555555443 22 6899999999 7877776 34577899 Q ss_pred cceeecCCccccC Q FBpp0305286 329 YGYKLYNRNQKRQ 341 (559) Q Consensus 329 L~~L~ls~N~i~~ 341 (559) |++|++++|.+.. T Consensus 174 L~~L~l~~N~l~~ 186 (263) T 1xeu_A 174 VNWIDLTGQKCVN 186 (263) T ss_dssp CCEEEEEEEEEEC T ss_pred CCEEEccCCEecc Confidence 9999999999985No 177>4q62_A Leucine-rich repeat-and coiled coil-containing PR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.90A {Legionella pneumophila subsp} Probab=99.34 E-value=1.1e-12 Score=139.48 Aligned_cols=180 Identities=12% Similarity=-0.000 Sum_probs=126.4 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +.++++|+.|.+.+|.+... .+..+...+..+++|++|+|++|.++..... .+.++++|+.|+|++|+|+..+ T Consensus 31 ~~~l~~L~~L~Ls~n~i~~~--~~~~l~~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~--- 103 (422) T 4q62_A 31 NHGISSLSELDLSDTRFTNQ--ELSDLVTALNNIPGIKSLRLDSCGLKDSDTV--ELSKLTHIKKLSLKSNYLKNRP--- 103 (422) T ss_dssp GTTCCSCCEEECTTCCCCHH--HHHHHHHHHTTCTTCCEEECTTSCCCHHHHH--HHTTCSSCCEEECTTCCCCSCC--- T ss_pred hccCCCCcEEeccCCCCchH--HHHHHHHHHccCCCCCEEECCCCCCCHHHHH--HHhcCCCCCEEECCCCccCccc--- Confidence 46788889999988887632 1111224458899999999999999874322 2478999999999999998732 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHh---ccCCCccEEeCCCCcCCC--chhc----cCCCCcccccCCCCCCccchhh Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIR---KMLPQLKNVHGCVQLGES--TEAV----DNIPKSQQLQGGGTNGLKFCQD 289 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il---~~lp~L~~Ldl~~N~~~~--~~~~----~~lp~Lk~L~l~~~~l~~L~~n 289 (559) ..+ +|++|+|++|.+....... + ..+++|++|++++|.+.. +..+ ..+++|+.|++ ++| T Consensus 104 --~~~~~L~~L~L~~n~~~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~L--------~~n 172 (422) T 4q62_A 104 --MFNSMLEALYLDYNTELSASYVL-FSLSRNAAALKKLSLRNCGVTDANLEYLTRPESRLKSLTHFNL--------RRN 172 (422) T ss_dssp --CCCTTCSEEECTTCTTCCHHHHH-HHHHHHCTTCCEEECTTSCCBHHHHGGGGCTTCCCCCCCEEEC--------CSS T ss_pred --ccCCCCCEEEccCCCCCchHHHH-HHHhccCCcCCEEEeeCCCCChHHHHHHHHHhhcCCCCCEEEc--------ccC Confidence 256 8999999999988765543 3 788899999999886542 2344 77888999944 444 Q ss_pred hhhhh-cccccCcccccccccccc-cc-ceeeeec-CCcCccccceeecCCcccc Q FBpp0305286 290 FISSY-YTFFDDTEERFKLKKYYD-DQ-AMFSLSV-PVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 290 ~L~~~-~~~~d~~~~l~~L~~L~l-~N-~l~sl~~-~~~~~~~L~~L~ls~N~i~ 340 (559) .+... +..+. .+++|+.|++ .| .+..... ....++.|++|++++|.+. T Consensus 173 ~l~~~~~~~l~---~l~~L~~L~L~~n~~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (422) T 4q62_A 173 NITHQGVDSFA---HLQSLTTIDLSQNTGIGDEGVSRLAPLKQLRTLYLDNCGIG 224 (422) T ss_dssp BCBHHHHHHHT---TCTTCCEEECCSCTBCHHHHHHTTTTCTTCCEEECTTSCCB T ss_pred cCCHHHHHHHh---cCCCCCEEECCCCCCcchHHHHHHhcCCCCCEEECcCCCCC Confidence 44432 22222 5788888888 66 5554422 2456788888888888775No 178>3wn4_A TOLL-like receptor 8; leucine rich repeat, RNA, glycosylation, innate immunity, RN recognition, ssrnar, structure-based ligand design; HET: D87 NAG BMA MAN; 1.81A {Homo sapiens} PDB: 3w3g_A* 3w3k_A* 3w3l_A* 3w3m_A* 3w3n_A* 3w3j_A* 4qbz_A* 4qc0_A* 4r07_A* 4r08_A* 4r09_A* 4r0a_A* Probab=99.34 E-value=5.1e-12 Score=145.68 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=83.6 Q ss_pred cCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCc-------chhHHhccCCCccEEeCCCCcCCC--chh Q FBpp0305286 197 QSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKL-------SVDVIRKMLPQLKNVHGCVQLGES--TEA 266 (559) Q Consensus 197 ~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~-------~~~~il~~lp~L~~Ldl~~N~~~~--~~~ 266 (559) ..+++|+.|+|++|+|+.+.. ..+..+ +|++|+|++|.+.+. .+. .+..+++|+.|++++|.+.. ... T Consensus 559 ~~l~~L~~L~Ls~N~i~~~~~-~~~~~~~~L~~L~L~~N~l~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~i~~~~ 636 (811) T 3wn4_A 559 QNFTNLKVLNLSHNNIYTLTD-KYNLESKSLVELVFSGNRLDILWNDDDNRYIS-IFKGLKNLTRLDLSLNRLKHIPNEA 636 (811) T ss_dssp GGCSSCCEEECTTSCCCCCSS-CCCCCBSSCCEEECTTSCHHHHTCTTCCTTTT-TTTTBTTCCEEECCSSCCSCCCHHH T ss_pred cccCCCCEEECCCCcccccch-hhccccCCCCEEEcCCCccccccccccchhhH-HhcCCCCCCEEECCCCcCCccChhh Confidence 445555555555555554432 122334 566666666655432 122 27789999999999997653 345 Q ss_pred ccCC-CCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCC-cCccccceeecCCccccC Q FBpp0305286 267 VDNI-PKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV-QLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 267 ~~~l-p~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~-~~~~~L~~L~ls~N~i~~ 341 (559) +..+ ++|+.|++ ++|.++.++..... .+++|+.|++ +|.+..++... ..++.|+.|++++|.++. T Consensus 637 ~~~l~~~L~~L~L--------~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 704 (811) T 3wn4_A 637 FLNLPASLTELHI--------NDNMLKFFNWTLLQ--QFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISH 704 (811) T ss_dssp HHTSCTTCSEEEC--------CSSCCSCCCGGGGG--GCTTCCEEECCSSCCCCCCSCGGGTCSSCCEEECCSSCCCC T ss_pred hhhcchhcceEEC--------CCCcccccCHhHhc--cCCCCCEEECCCCcccccChhHhccccccCEEECCCCcccc Confidence 6777 48999954 44545444332111 5888999999 77777654433 346889999999998874No 179>4q62_A Leucine-rich repeat-and coiled coil-containing PR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.90A {Legionella pneumophila subsp} Probab=99.33 E-value=7.6e-13 Score=140.59 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=32.7 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCC Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDL 215 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l 215 (559) .+.+|+.|.+.+|.+.. .....+..+++|++|+|++|+|+..+ ..+++|+.|+|++|.++.. T Consensus 61 ~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~l~~~~------~~~~~L~~L~L~~n~~~~~ 122 (422) T 4q62_A 61 NIPGIKSLRLDSCGLKD------SDTVELSKLTHIKKLSLKSNYLKNRP------MFNSMLEALYLDYNTELSA 122 (422) T ss_dssp TCTTCCEEECTTSCCCH------HHHHHHTTCSSCCEEECTTCCCCSCC------CCCTTCSEEECTTCTTCCH T ss_pred cCCCCCEEECCCCCCCH------HHHHHHhcCCCCCEEECCCCccCccc------ccCCCCCEEEccCCCCCch Confidence 44556666666665542 12223356677777777777766611 2444555555555544433No 180>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Probab=99.33 E-value=4.7e-12 Score=140.70 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=121.2 Q ss_pred CCCCCcccc-ccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 142 RFHASPELS-LHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 142 ~l~~L~~L~-l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) .+.+|+.|. +.+|.+..+ + ..+++|+.|+|++|+|+.++. .+++|+.|+|++|+|+.++. T Consensus 77 ~l~~L~~L~~Ls~N~l~~i---p-------~~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~--- 137 (571) T 3cvr_A 77 NLPPQITVLEITQNALISL---P-------ELPASLEYLDACDNRLSTLPE------LPASLKHLDVDNNQLTMLPE--- 137 (571) T ss_dssp CCCTTCSEEECCSSCCSCC---C-------CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC--- T ss_pred CCCChhHHHhhhCCCcCCc---C-------CCCCCCCEEECcCCcCCCCCC------cCCCCCEEECCCCccCCCCc--- Confidence 466777888 888877642 1 578899999999999998775 67899999999999998874 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcc--- Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT--- 296 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~--- 296 (559) .+ +|++|+|++|.+++++.. +++|+.|++++|.+...+.+. ++|+.| ++++|.++.++. T Consensus 138 --~l~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~Ls~N~l~~lp~l~--~~L~~L--------~Ls~N~l~~lp~lp~ 200 (571) T 3cvr_A 138 --LPALLEYINADNNQLTMLPEL-----PTSLEVLSVRNNQLTFLPELP--ESLEAL--------DVSTNLLESLPAVPV 200 (571) T ss_dssp --CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSCCCCCC--TTCCEE--------ECCSSCCSSCCCCC- T ss_pred --ccccCCEEECCCCcCCCCCcc-----cchhcEEECCCCCCCcccccc--CCCCEE--------EeeCCcCCCCccchH Confidence 35 899999999999986542 389999999999765544443 889999 555555555433 Q ss_pred cccCccccccccccc-c-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 297 FFDDTEERFKLKKYY-D-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 297 ~~d~~~~l~~L~~L~-l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) .+. ++++|+.|+ + +|.+..++.....++.|++|++++|.+.. T Consensus 201 ~l~---~l~~L~~L~iLs~N~l~~ip~~l~~l~~L~~L~L~~N~l~~ 244 (571) T 3cvr_A 201 RNH---HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571) T ss_dssp ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH T ss_pred HHh---cCchhhhhhhccCCCCCccChHHhcCCCCCEEEEeCCcCCC Confidence 332 688999999 9 78887665555778899999999999873No 181>4xos_A Acidic leucine-rich nuclear phosphoprotein 32 FAM A; leucine rich repeat tumor suppressor, component of the SET C antitumor protein; HET: GOL; 1.56A {Homo sapiens} PDB: 2je0_A 2je1_A Probab=99.33 E-value=4.3e-12 Score=115.37 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=98.2 Q ss_pred hccCCCccEEEccCCcCC--CCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhc Q FBpp0305286 170 NHLFPHVTSLVLSNNYLC--SLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRK 246 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~--~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~ 246 (559) ...+++|++|+|++|.++ .++.. +..+++|+.|+|++|+++.++ .+..+ +|++|+|++|.+.+..+.. +. T Consensus 16 ~~~~~~L~~L~l~~~~l~~~~l~~~---~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~-~~ 88 (152) T 4xos_A 16 NRTPSDVKELVLDNSRSNEGKLEGL---TDEFEELEFLSTINVGLTSIA---NLPKLNKLKKLELSDNRVSGGLEVL-AE 88 (152) T ss_dssp TSCGGGCSEEECTTCBCBTTBCCSC---CTTCTTCCEEECTTSCCCCCT---TCCCCTTCCEEECCSSCCCSCTHHH-HH T ss_pred cCCCCcceEEEccCCcccHhHHHHH---HhhCCCCCEEeCCCCCCCCch---hhhcCCCCCEEECCCCcccchHHHH-HH Confidence 356788999999999998 66643 578999999999999999875 47788 9999999999998855554 78 Q ss_pred cCCCccEEeCCCCcCCC---chhccCCCCcccccCCCCCCccchhhhhhhhcc----cccCcccccccccccc Q FBpp0305286 247 MLPQLKNVHGCVQLGES---TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT----FFDDTEERFKLKKYYD 312 (559) Q Consensus 247 ~lp~L~~Ldl~~N~~~~---~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~----~~d~~~~l~~L~~L~l 312 (559) .+++|+.|++++|.+.. +..+..+++|+.| ++++|.+...+. .+. .+++|+.|++ T Consensus 89 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L--------~l~~n~i~~~~~~~~~~~~---~l~~L~~L~l 150 (152) T 4xos_A 89 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL--------DLFNCEVTNLNDYRENVFK---LLPQLTYLDG 150 (152) T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE--------ECTTCGGGGSTTHHHHHHH---HCTTCCEETT T ss_pred hCCCCCEEECCCCcccchHHHHHHhcCCCCCEE--------ECCCCCCCChHHHHHHHHH---HCcccccccC Confidence 99999999999997765 3567888999999 555555555442 222 5778888776No 182>4mn8_A LRR receptor-like serine/threonine-protein kinase; FLS2, BAK1, flagellin, plant immunity, leucine-rich R transferase-transferase receptor complex; HET: NAG; 3.06A {Arabidopsis thaliana} PDB: 4mna_A* Probab=99.33 E-value=1.7e-12 Score=149.50 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=144.3 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCC-cCccccccCCCCCCEEeCCCCCCC-CCCc Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSL-KAFAGNSQSFASLERLDISANRIQ-DLGE 217 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l-~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~ 217 (559) +.++.+|+.|.+.+|.+.. .++ ..+.++++|++|+|++|.++.. +. .+..+++|+.|++++|.++ .++. T Consensus 116 l~~l~~L~~LdLs~n~l~~--~~p----~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~l~~n~l~~~~p~ 186 (782) T 4mn8_A 116 IWELKNIFYLDLRNNLLSG--DVP----EEICKTSSLVLIGFDYNNLTGKIPE---CLGDLVHLQMFVAAGNHLTGSIPV 186 (782) T ss_dssp GGGCSSCCEEECCSSCCBS--BCC----GGGGGCTTCCEEECCSSCCBSBCCT---TGGGCTTCSEEECCSSCCBSBCCG T ss_pred HcCCCCCCEEECcCCccCC--cCC----hhHccCCCCCEEECcCccccccCCh---HHccCCCCCEEECcCCcccccCCh Confidence 3457788888888887752 122 2337899999999999999853 33 3588999999999999998 4553 Q ss_pred cCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhh- Q FBpp0305286 218 LNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISS- 293 (559) Q Consensus 218 l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~- 293 (559) .+..+ +|++|+|++|.+.+..+.. +..+++|+.|+++.|... .+..+..+++|+.| ++.+|.+.. T Consensus 187 --~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L--------~L~~n~l~~~ 255 (782) T 4mn8_A 187 --SIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQL--------ELYDNQLTGK 255 (782) T ss_dssp --GGGGCTTCCEEECCSSCCBSCCCGG-GGGCSSCCEEECCSSCCCSBCCGGGGGCTTCSEE--------ECCSSCCBSB T ss_pred --hHcccCCCCEEECCCCccCCCCChH-HhCCCCCCEEECcCCeeeccCChHHhcCCCCCEE--------ECcCCCcCCc Confidence 68888 9999999999999887776 899999999999999654 35567889999999 556665553 Q ss_pred hcccccCcccccccccccc-ccceee-eecCCcCccccceeecCCccccC--CChhhhhhhhhhh Q FBpp0305286 294 YYTFFDDTEERFKLKKYYD-DQAMFS-LSVPVQLNYVYGYKLYNRNQKRQ--HSSFAQNAKLQVG 354 (559) Q Consensus 294 ~~~~~d~~~~l~~L~~L~l-~N~l~s-l~~~~~~~~~L~~L~ls~N~i~~--~~~~~rl~~L~~g 354 (559) .+..+. ++++|+.|++ .|.+.. ++.....++.|++|++++|.+.. ...+..+..|... T Consensus 256 ~p~~l~---~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 317 (782) T 4mn8_A 256 IPAELG---NLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVL 317 (782) T ss_dssp CCGGGG---GCCSCCEEECCSSCCBSBCCGGGGGCCSCSEEECCSSCCBSCCCGGGGGTCSCCEE T ss_pred CChHHh---CCCCCCEEECcCCcccccCChHHhcccCCCeeecccCccCCCCChHHcCCCCCCEE Confidence 333443 6899999999 666653 22234678899999999999873 3344444444443No 183>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Probab=99.32 E-value=5.1e-12 Score=116.48 Aligned_cols=135 Identities=18% Similarity=0.156 Sum_probs=102.8 Q ss_pred HhhccCCCccEEEccCCcCC--CCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHH Q FBpp0305286 168 LSNHLFPHVTSLVLSNNYLC--SLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVI 244 (559) Q Consensus 168 ~i~~~l~~L~~L~Ls~N~L~--~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~i 244 (559) .....+++|++|+|++|.|+ .++.. +..+++|+.|+|++|.++.++ .+..+ +|++|+|++|.+....+.. T Consensus 18 ~~~~~~~~L~~L~l~~~~i~~~~l~~~---~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~- 90 (168) T 2ell_A 18 LRNRTPAAVRELVLDNCKSNDGKIEGL---TAEFVNLEFLSLINVGLISVS---NLPKLPKLKKLELSENRIFGGLDML- 90 (168) T ss_dssp HTTSCTTSCSEEECCSCBCBTTBCSSC---CGGGGGCCEEEEESSCCCCCS---SCCCCSSCCEEEEESCCCCSCCCHH- T ss_pred HhcccCCCccEEEecCCCCchhHHHHH---HhhCCccCEEEcccccCccch---hhccCCCCCEEeccCCcccchHHHH- Confidence 34467889999999999998 66643 578899999999999999876 47788 9999999999998854444 Q ss_pred hccCCCccEEeCCCCcCCCc---hhccCCCCcccccCCCCCCccchhhhhhhhc----ccccCcccccccccccc-ccce Q FBpp0305286 245 RKMLPQLKNVHGCVQLGEST---EAVDNIPKSQQLQGGGTNGLKFCQDFISSYY----TFFDDTEERFKLKKYYD-DQAM 316 (559) Q Consensus 245 l~~lp~L~~Ldl~~N~~~~~---~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~----~~~d~~~~l~~L~~L~l-~N~l 316 (559) +..+++|+.|++++|.+... ..+..+++|+.| ++++|.+...+ ..+. .+++|+.|++ .|.+ T Consensus 91 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L--------~l~~n~i~~~~~~~~~~~~---~~~~L~~L~l~~n~~ 159 (168) T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL--------DLFNCEVTNLNDYRESVFK---LLPQLTYLDGYDRED 159 (168) T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE--------ECCSSGGGTSTTHHHHHHT---TCSSCCEETTEETTS T ss_pred HhhCCCCCEEECCCCCCCcchhHHHHhcCCcCCEE--------eccCCcCCCHHHHHHHHHH---HCCCcEEeeCCcCCC Confidence 78999999999999976542 467788899999 55555555443 1222 5777888888 6666 Q ss_pred eeee Q FBpp0305286 317 FSLS 320 (559) Q Consensus 317 ~sl~ 320 (559) ..++ T Consensus 160 ~~~~ 163 (168) T 2ell_A 160 QEAP 163 (168) T ss_dssp CBCC T ss_pred cccc Confidence 5553No 184>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Probab=99.32 E-value=2.7e-12 Score=139.73 Aligned_cols=169 Identities=17% Similarity=0.083 Sum_probs=106.1 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) ..+.+|+.|.+.+|.+.... . +..+++|++|+|++|.|+.++.. ++|+.|+|++|.++.++. T Consensus 55 ~~l~~L~~L~Ls~n~l~~~~------~--~~~l~~L~~L~Ls~n~l~~~~~~-------~~L~~L~l~~n~l~~~~~--- 116 (487) T 3oja_A 55 APFTKLELLNLSSNVLYETL------D--LESLSTLRTLDLNNNYVQELLVG-------PSIETLHAANNNISRVSC--- 116 (487) T ss_dssp TTCTTCCEEECTTSCCEEEE------E--CTTCTTCCEEECCSSEEEEEEEC-------TTCCEEECCSSCCCCEEE--- T ss_pred cCCCCCCEEEecCCCCCCCc------c--cccCCCCCEEEccCCcCCCcCCC-------CCcCEEECCCCCCCCCCc--- Confidence 44556666666666554221 0 35666777777777766654321 667777777777666552 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhc-cCCCCcccccCCCCCCccchhhhhhhhcc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAV-DNIPKSQQLQGGGTNGLKFCQDFISSYYT 296 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~-~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~ 296 (559) ..+ +|++|+|++|.+.+..+.. +..+++|+.|++++|.+.. +..+ ..+++|+.| ++++|.+...+. T Consensus 117 -~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~ 186 (487) T 3oja_A 117 -SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL--------NLQYNFIYDVKG 186 (487) T ss_dssp -CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE--------ECTTSCCCEEEC T ss_pred -cccCCCCEEECCCCCCCCCcchh-hccCCCCCEEECCCCccCCcCHHHHhhhCCCCCEE--------ECCCCccCCcCC Confidence 245 6778888888777766544 6777788888887775532 2223 357778888 444444444433 Q ss_pred cccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccC Q FBpp0305286 297 FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 297 ~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~ 341 (559) .. .+++|+.|++ +|.+..++.....++.|++|++++|.+.. T Consensus 187 ~~----~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~L~~n~l~~ 228 (487) T 3oja_A 187 QV----VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (487) T ss_dssp CC----CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE T ss_pred cc----cCCCCCEEECCCCCCCCcChhhcCCCCcCeeEcCCCCCCC Confidence 21 3677888888 67777665555667778888888887763No 185>4hq1_A Probable receptor protein kinase TMK1; receptor-like kinase, transferase; HET: NAG BMA MAN FUC; 1.55A {Arabidopsis thaliana} Probab=99.32 E-value=2.5e-12 Score=139.29 Aligned_cols=177 Identities=15% Similarity=0.086 Sum_probs=105.7 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC--CCCc Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ--DLGE 217 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~--~l~~ 217 (559) +..+.+|+.|.+.+|.+... .+ .+..+++|++|+|++|+|+.++.. .+..+++|+.|+|++|+++ .++. T Consensus 84 l~~l~~L~~L~Ls~n~l~~~--~~-----~~~~l~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~ 154 (475) T 4hq1_A 84 LRNLSELERLELQWNNISGP--VP-----SLSGLASLQVLMLSNNNFDSIPSD--VFQGLTSLQSVEIDNNPFKSWEIPE 154 (475) T ss_dssp GGGCTTCCEEECCSSCCEEE--CC-----CCTTCTTCCEEECCSSEEEECCTT--TTTTCTTCCEEECCSCCCCSBCCCG T ss_pred HhcCCCCCEEECcCCccccc--CC-----ccccCCCCCEEECcCCcCCCcChH--HHccCCCCCEEECcCCcCCCCCCCh Confidence 44566667777766665421 01 135677777777777777766543 2467777777777777777 3443 Q ss_pred cCccCCC-CccEEEeecCcCCCcchhHHhc--cCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhh Q FBpp0305286 218 LNYINKL-SCKTIFLAGNGLAKLSVDVIRK--MLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFIS 292 (559) Q Consensus 218 l~~l~~l-~L~~L~L~~N~l~~~~~~~il~--~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~ 292 (559) .+..+ +|++|++++|.+.+..+.. +. .+++|+.|+++.|... .+..+.. ++|+.| ++.+|.+. T Consensus 155 --~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L--------~L~~n~l~ 222 (475) T 4hq1_A 155 --SLRNASALQNFSANSANVSGSLPGF-LGPDEFPGLSILHLAFNNLEGELPMSLAG-SQVQSL--------WLNGQKLT 222 (475) T ss_dssp --GGGGCTTCCEEECTTSCBEEECCGG-GSTTTCTTCCEEECTTSEEEEECCGGGTT-CCCSEE--------ECCSSEEE T ss_pred --HHhcccccceeEccCceecCcCChh-hhhccCCCCCEEECCCCccCCcCChhHhc-CCcceE--------ECccccCC Confidence 56666 7777777777776655444 55 6777777777777432 2233333 667777 33344333 Q ss_pred hhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 293 SYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 293 ~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) .....+. ++++|+.|++ .|.+.........++.|++|++++|.+. T Consensus 223 ~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 268 (475) T 4hq1_A 223 GDITVLQ---NMTGLKEVWLHSNKFSGPLPDFSGLKELESLSLRDNSFT 268 (475) T ss_dssp ECCGGGG---GCTTCSEEECCSSEEEEECCCCTTCTTCCEEECCSSEEE T ss_pred CCchhhh---cCCCCCEEEeeCCeeecccCCcccCCCCCEEeCcCCeee Confidence 3332222 4667777777 4544432222455667777777777765No 186>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Probab=99.32 E-value=5.9e-13 Score=149.87 Aligned_cols=157 Identities=10% Similarity=-0.008 Sum_probs=88.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCC-CCEEeCCCCCCCCCCccCccCCC---CccEEEeecCcCCCcchhHHhc Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFAS-LERLDISANRIQDLGELNYINKL---SCKTIFLAGNGLAKLSVDVIRK 246 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~-L~~L~Ls~N~L~~l~~l~~l~~l---~L~~L~L~~N~l~~~~~~~il~ 246 (559) ..+++|++|+|++|+++.++.. +..+++ |+.|+|++|+++.++. .+... +|++|+|++|.+++..+.. +. T Consensus 350 ~~l~~L~~L~L~~n~l~~ip~~---l~~l~~~L~~L~Ls~n~l~~lp~--~~~~~~~~~L~~L~Ls~N~l~~~~p~~-l~ 423 (636) T 4eco_A 350 GSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLKYIPN--IFDAKSVSVMSAIDFSYNEIGSVDGKN-FD 423 (636) T ss_dssp EEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCSSCCS--CCCTTCSSCEEEEECCSSCTTTTTTCS-SC T ss_pred cCCCCCCEEECCCCeeeeccHH---HHhhcCcCCEEEccCCccchhhH--HHhhcccccCCEEECcCCcCCCccchh-hc Confidence 4556666666666666655443 355666 7777777777776654 33333 3777777777776654433 33 Q ss_pred -------cCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCc-----ccccccccccc Q FBpp0305286 247 -------MLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDT-----EERFKLKKYYD 312 (559) Q Consensus 247 -------~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~-----~~l~~L~~L~l 312 (559) .+++|+.|++++|.+.. ...+..+++|+.| ++++|.++.++.....+ .++++|+.|++ T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~ip~~~~~~l~~L~~L--------~Ls~N~l~~ip~~~~~~~~~~~~~~~~L~~L~L 495 (636) T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI--------NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495 (636) T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE--------ECCSSCCSBCCSSSSEETTEECTTGGGCCEEEC T ss_pred ccccccccCCcceEEECCCCccccccHHHhccCCCCCEE--------ECCCCCccccCHHhhccccccccccCccCEEEC Confidence 55677777777765432 2234456777777 33333333333221100 01237777777 Q ss_pred -ccceeeeecCCc--CccccceeecCCccccC Q FBpp0305286 313 -DQAMFSLSVPVQ--LNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 313 -~N~l~sl~~~~~--~~~~L~~L~ls~N~i~~ 341 (559) .|.+..++.... .++.|++|++++|.+.. T Consensus 496 s~N~l~~ip~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636) T 4eco_A 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527 (636) T ss_dssp CSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS T ss_pred CCCcCcCcChhhhhccCCccCEEECCCCCCcc Confidence 666664443333 56777777777777653No 187>1o6v_A Internalin A; cell adhesion, bacterial infection, extracellular recognitio WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Probab=99.32 E-value=1.1e-11 Score=133.60 Aligned_cols=171 Identities=16% Similarity=0.175 Sum_probs=126.9 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+.+|+.|.+.+|.+..... ...+++|++|+|++|+++.++. +..+++|+.|+|++|.++.++. + T Consensus 197 ~l~~L~~L~l~~n~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~---~ 261 (466) T 1o6v_A 197 KLTNLESLIATNNQISDITP--------LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP---L 261 (466) T ss_dssp GCTTCSEEECCSSCCCCCGG--------GGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG---G T ss_pred cCCCCCEEECCCCcCCCCcc--------cccCCccCEEEeeCcccCChhH----HhcCCCCCEEECCCCCcccChh---h Confidence 34555566666555543211 3678999999999999988743 3788999999999999987763 6 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccC Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDD 300 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~ 300 (559) ..+ +|++|++++|.+.+... +..+++|+.|++++|.......+..+++|+.| ++.+|.+..... +. T Consensus 262 ~~~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L--------~l~~n~l~~~~~-~~- 328 (466) T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYL--------TLYFNNISDISP-VS- 328 (466) T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEE--------ECCSSCCSCCGG-GG- T ss_pred ccCCCCCEEECCCCccCCccc---cCCCcCCCEEECCCCccCCccccccCCcCCEE--------EeeCCccCCCcc-cc- Confidence 778 99999999999988765 77899999999999976655557888999999 444444444433 21 Q ss_pred cccccccccccc-ccceeeeecCCcCccccceeecCCccccCCC Q FBpp0305286 301 TEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHS 343 (559) Q Consensus 301 ~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~ 343 (559) .+++|+.|++ +|.+..+ .....++.|++|++++|.+.... T Consensus 329 --~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~~~~~~ 369 (466) T 1o6v_A 329 --SLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLT 369 (466) T ss_dssp --GCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCG T ss_pred --cCCCCCEEECcCCccCCc-hhhcccCCCCEEeCCCCccCCCc Confidence 6888999999 6666553 23467788999999999886443No 188>4lsc_A Somatic embryogenesis receptor kinase 1; LRR-domain, membrane CO-receptor, brassinosteroid binding, N glycosylation, protein binding; HET: NAG BMA FUC; 1.53A {Arabidopsis thaliana} PDB: 4lsx_C* Probab=99.32 E-value=7e-13 Score=129.26 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=105.9 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCC-cCccccccCCCCCCEEeCCCCCCC-CCCccCc Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSL-KAFAGNSQSFASLERLDISANRIQ-DLGELNY 220 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l-~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~ 220 (559) ..+++.|.+.+|.+... ....+..+++|++|+|++|+|+.. +.. +..+++|+.|+|++|+|+ .++. . T Consensus 50 ~~~l~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~N~l~~~~~~--~ 118 (223) T 4lsc_A 50 ENSVIRVDLGNAELSGH------LVPELGVLKNLQYLELYSNNITGPIPSN---LGDLTNLVSLDLYLNSFSGPIPE--S 118 (223) T ss_dssp TSCEEEEECTTSCCEEB------CCGGGGGCTTCCEEECCSSCCEECCCTT---GGGCTTCSEEECCSSEEEECCCG--G T ss_pred CCCEEEEECCCCccCCc------CCHHHhCCCCCCEEECcCCeecCcCCHH---HhcCCCCCEEECcCCcCCCcccH--H Confidence 45677778878777521 112347899999999999999953 433 588999999999999999 4553 6 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC-CchhccCCCCcccccCCCCCCccchhh-hhhhhccc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE-STEAVDNIPKSQQLQGGGTNGLKFCQD-FISSYYTF 297 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~-~~~~~~~lp~Lk~L~l~~~~l~~L~~n-~L~~~~~~ 297 (559) +..+ +|++|+|++|.+.+..+.. +..+++|+.|++++|.+. .......+++|+.| ++.+| .+...+.. T Consensus 119 l~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L--------~l~~N~~l~~~~~~ 189 (223) T 4lsc_A 119 LGKLSKLRFLRLNNNSLTGSIPMS-LTQITTLQVLDLSNNRLSGSVPDNGSFSLFTPI--------SFANNLDLCGPVTS 189 (223) T ss_dssp GGGCTTCCEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCCSGGGGGCCGG--------GTCSCSEEEBTTTT T ss_pred HhcCCCCCEEECcCCcCcCcCCHH-HhcCCCCCEEEeeCCcccccCCCCccCCCCCee--------ccCCCCCCcCCCcc Confidence 8888 9999999999999776665 899999999999999654 22223678899999 66666 56655443 Q ss_pred ccCcccccccccccc-ccceeeee Q FBpp0305286 298 FDDTEERFKLKKYYD-DQAMFSLS 320 (559) Q Consensus 298 ~d~~~~l~~L~~L~l-~N~l~sl~ 320 (559) .. ..++|+.|++ +|.+.... T Consensus 190 ~~---~~~~L~~L~l~~N~~~~~~ 210 (223) T 4lsc_A 190 HP---CPGSLENLYFQGAWSHPQF 210 (223) T ss_dssp BC---CCC---------------- T ss_pred cc---cccccceEEecCCcccccc Confidence 33 3678999999 77766543No 189>4j0m_A Serine/threonine-protein kinase BRI1-like 1; leucine-rich repeat, receptor, transferase; HET: NAG BLD BMA MAN; 2.50A {Arabidopsis thaliana} Probab=99.31 E-value=3e-12 Score=146.44 Aligned_cols=221 Identities=11% Similarity=-0.018 Sum_probs=138.4 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC-CCCccCcc Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ-DLGELNYI 221 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~l 221 (559) +.+|+.|.+.+|.+... ++ ...+..+++|++|+|++|+++...+. .+..+++|+.|+|++|+++ .++. .+ T Consensus 425 l~~L~~L~l~~n~l~~~--ip---~~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~--~l 495 (740) T 4j0m_A 425 LPNLSDLVMWANNLTGT--IP---EGVCVKGGNLETLILNNNLLTGSIPE--SISRCTNMIWISLSSNRLTGKIPS--GI 495 (740) T ss_dssp CTTCCEEECCSSEEESC--CC---TTTTTSSCCCSEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSBCCG--GG T ss_pred CCCCCEEECCCCcceee--cC---hHHhcccCCcCEEECCCCcCCCcCCH--HHhcCCCCCEEECcCCcccCchhH--HH Confidence 56677777777765411 11 12346778899999999998853222 2478889999999999888 4553 67 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCC--------C--------- Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGG--------T--------- 281 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~--------~--------- 281 (559) .++ +|++|+|++|++.+..+.. +..+++|+.|++++|... .+..+..++.|+.+.+.+ + T Consensus 496 ~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~l~l~~~~~~~~~~n~~~~~c~~~ 574 (740) T 4j0m_A 496 GNLSKLAILQLGNNSLSGNVPRQ-LGNCKSLIWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGA 574 (740) T ss_dssp GGCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEECSBCCGGGGTTTTTBCCCTTTTCEEEEEEESCCSTTTTS T ss_pred hcCCCCCEEECCCCccCCcCCHH-HhCCCCCCEEECCCCccCCcCChHHhcCcccceeeccccccccccccccccccccc Confidence 788 8999999999888776665 788889999999888432 222333333333332222 0 Q ss_pred -------------------------------------------CCccchhhhhhhh-cccccCcccccccccccc-ccce Q FBpp0305286 282 -------------------------------------------NGLKFCQDFISSY-YTFFDDTEERFKLKKYYD-DQAM 316 (559) Q Consensus 282 -------------------------------------------~l~~L~~n~L~~~-~~~~d~~~~l~~L~~L~l-~N~l 316 (559) ..-++++|.+... |..+. ++++|+.|++ .|.+ T Consensus 575 ~~l~~~~~~~~~~l~~l~~l~~~~~~~~~~g~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~~~---~l~~L~~L~Ls~N~l 651 (740) T 4j0m_A 575 GGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYG---NMGYLQVLNLGHNRI 651 (740) T ss_dssp SEEEECTTCCGGGGGGSTTTTTSCEEEEEEEECCCSCSSSBCCSEEECCSSCCBSBCCGGGG---GCTTCCEEECCSSCC T ss_pred cccccccccCchhhhcccccceecccccccCcChhhhhcccccCEEECcCCccCCCCChHHh---cCccCCEEECcCCcc Confidence 0115666666643 34443 6888999999 5555 Q ss_pred e-eeecCCcCccccceeecCCcccc--CCChhhhhhhhhhhhHHHHHHhhcCCCCCcCCCceee Q FBpp0305286 317 F-SLSVPVQLNYVYGYKLYNRNQKR--QHSSFAQNAKLQVGRAALLLALSRLPLMHTDLENVGL 377 (559) Q Consensus 317 ~-sl~~~~~~~~~L~~L~ls~N~i~--~~~~~~rl~~L~~g~~~i~~~L~~LP~t~h~lssl~v 377 (559) . .++.....++.|+.|++++|.+. .+..+..+..|.............+|.. ..+.++.. T Consensus 652 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~ 714 (740) T 4j0m_A 652 TGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPFG-GQLTTFPV 714 (740) T ss_dssp EECCCGGGGGCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEECEECCCS-TTGGGSCG T ss_pred CCcCcHHHhCCCCCCEEECCCCcccccCCHHHhCccCCCEEeCcCCcccCcCCCC-ccccCCCH Confidence 4 23333467788899999999886 3555666666655533222233345544 34444443No 190>4cnm_A Trophoblast glycoprotein; cell adhesion, WAIF1, TPBG, trovax, MVA-5T4, cancer, signali leucine-rich repeats, WNT/beta-catenin signaling pathway; HET: NAG CIT; 1.75A {Homo sapiens} SCOP: c.10.2.0 PDB: 4cnc_A* Probab=99.31 E-value=2.7e-12 Score=130.10 Aligned_cols=174 Identities=19% Similarity=0.108 Sum_probs=119.2 Q ss_pred CCceeEEEEcC-CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhcc Q FBpp0305286 94 TCQKIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHL 172 (559) Q Consensus 94 ~~~~i~l~v~p-~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~ 172 (559) +|..-.+...| .+|+..+.++++.+.++ .. +....-.+..+.+|+.|.+.+|.+..+ ....+.+ T Consensus 20 ~c~~~~l~~iP~~~~~~L~~L~Ls~n~i~--------~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~ 84 (299) T 4cnm_A 20 KCVNRNLTEVPTDLPAYVRNLFLTGNQLA--------VL-PAGAFARRPPLAELAALNLSGSRLDEV------RAGAFEH 84 (299) T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSCCCE--------EE-CTTTTCCSSCCTTCCEEECTTSCEEEE------CTTTTTT T ss_pred EeCCCCcCccCccCCcCCCEEECCCCcCc--------cc-ChhhccCCcccccCCEeECCCCcCccc------CcccccC Confidence 34444455555 67777777777776651 10 111112233478899999998887633 1234578 Q ss_pred CCCccEEEccCCcCCCCcCccccccC-------CCCCCEEeCCCCCCCCCCcc------------CccCCC-CccEEEee Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQS-------FASLERLDISANRIQDLGEL------------NYINKL-SCKTIFLA 232 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~-------l~~L~~L~Ls~N~L~~l~~l------------~~l~~l-~L~~L~L~ 232 (559) +++|++|+|++|+|+.++... +.. .++|+.|++++|........ ..+..+ +|++|+|+ T Consensus 85 l~~L~~L~Ls~N~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 162 (299) T 4cnm_A 85 LPSLRQLDLSHNPLADLSPFA--FSGSNASVSAPSPLVELILNHIVPPEDERQNRSFEGMVVAALLAGRALQGLRRLELA 162 (299) T ss_dssp CTTCCEEECCSCCCSEECTTT--TTCCC-----CCCCCEEECTTCCCTTGGGSSSCHHHHHHHHHHGGGTTTTCCEEECC T ss_pred CCCCCEeECCCCccCeeChhh--ccCcccccccchhHHHHhhccccCchhhhccccccccchhccccccccCCCCEEECC Confidence 999999999999999987642 233 36899999998876543210 012347 89999999 Q ss_pred cCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCcc Q FBpp0305286 233 GNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLK 285 (559) Q Consensus 233 ~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~ 285 (559) +|.+...+... +..+++|+.|++++|.+.. ...+..+++|+.|++++|.+.. T Consensus 163 ~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 216 (299) T 4cnm_A 163 SNHFLYLPRDV-LAQLPSLRHLDLSNNSLVSLTYVSFRNLTHLESLHLEDNALKV 216 (299) T ss_dssp SSCCCSCCHHH-HHHCTTCCEEECCSSCCCCCTTCCCTTCTTCCEEECTTSCCCC T ss_pred CCCccccCHHH-hcCCCCCCEEECCCCcccccCHhhcCCCCCCCEEECCCCccCc Confidence 99999888776 8899999999999997654 3467889999999444444433No 191>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Probab=99.31 E-value=2.5e-12 Score=134.46 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=89.7 Q ss_pred CCccccccccCCcchhhhHHHHHHhhc-cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 145 ASPELSLHFCPLHMVKLLETVLVLSNH-LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 145 ~L~~L~l~~~~l~~~~~~~~~l~~i~~-~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) .++.|.+.+|.+..+. ...+. .+++|++|+|++|+|+.++.. .+..+++|+.|+|++|+|+.++. ..|.+ T Consensus 40 ~l~~L~Ls~n~i~~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 110 (361) T 2xot_A 40 YTALLDLSHNNLSRLR------AEWTPTRLTNLHSLLLSHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTLDE-FLFSD 110 (361) T ss_dssp TCSEEECCSSCCCEEC------TTSSSSCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECT-TTTTT T ss_pred CCCEEECCCCCCCccc------ccccccccCCCCEEECCCCcCCEeCcc--cccCCCCCCEEECCCCcCCccCH-HHhcC Confidence 3555666666665331 11222 778888888888888887643 24778888888888888887763 46777 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc--hhc---cCCCCcccccCCCCCCccch Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST--EAV---DNIPKSQQLQGGGTNGLKFC 287 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~--~~~---~~lp~Lk~L~l~~~~l~~L~ 287 (559) + +|++|+|++|.+....+.. +..+++|+.|++++|.+... ..+ ..+++|+.|++++|.+..+. T Consensus 111 l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 179 (361) T 2xot_A 111 LQALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361) T ss_dssp CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC T ss_pred cccCCEEECCCCCCceeCHHH-cCCcccCCEEECCCCcCCccCHHHhccccCCCcCCEEECCCCCCCeeC Confidence 7 8888888888888776665 77788888888888865432 333 26788888855555444443No 192>3wpc_A TOLL-like receptor 9; leucine rich repeat, receptor, innate immunity, DNA binding, glycosylation; HET: DNA NAG; 1.60A {Equus caballus} PDB: 3wpb_A* 3wpd_A* 3wpe_A* 3wpf_A* 3wpg_A* 3wph_A* 3wpi_A* Probab=99.31 E-value=6.4e-12 Score=144.75 Aligned_cols=64 Identities=20% Similarity=0.114 Sum_probs=29.5 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCC Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRI 212 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L 212 (559) ++.+|+.|.+.+|.+... + ....+..+++|++|+|++|+++.+.+. .+..+++|+.|+|++|++ T Consensus 473 ~l~~L~~L~L~~n~l~~~--i---~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l 536 (802) T 3wpc_A 473 QLSRLQCLRLSHNSISQA--V---NGSQFVPLTSLQVLDLSHNKLDLYHGR--SFTELPRLEALDLSYNSQ 536 (802) T ss_dssp TCTTCSEEECTTSCCCCC--C---CSCTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECTTCHH T ss_pred CCCCCCEEECCCCCCCCc--c---cccccCCCCCCCEEECCCCccCCcChh--hhcCCCCCCeeeCCCCCC Confidence 344555555555554320 0 001224555666666666666554322 124444455555554443No 193>3wpc_A TOLL-like receptor 9; leucine rich repeat, receptor, innate immunity, DNA binding, glycosylation; HET: DNA NAG; 1.60A {Equus caballus} PDB: 3wpb_A* 3wpd_A* 3wpe_A* 3wpf_A* 3wpg_A* 3wph_A* 3wpi_A* Probab=99.31 E-value=5.9e-12 Score=145.06 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=87.1 Q ss_pred ccCCCccEEEccCCcCCCCcCc------------------cccccCCCCCCEEeCCCCCCCC--------CCccCccCCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAF------------------AGNSQSFASLERLDISANRIQD--------LGELNYINKL 224 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~------------------~~l~~~l~~L~~L~Ls~N~L~~--------l~~l~~l~~l 224 (559) .++++|++|+|++|+|+.+|.. ...+.++++|+.|+|++|.+.. +. ...+.++ T Consensus 99 ~~l~~L~~L~Ls~n~l~~lp~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~i~-~~~~~~l 177 (802) T 3wpc_A 99 LAVPTLEELNLSYNGITTVPALPSSLVSLILSRTNILQLDPTSLTGLHALRFLYMDGNCYYKNPCGRALEVA-PGALLGL 177 (802) T ss_dssp TTCTTCCEEECCSBCCSSCCCCCTTCCEEECTTSCCCEECTTTSTTCTTCCEEECCCSSBTTBCCSSCCEEC-TTTTTTC T ss_pred hcCCcCCEEECCCCCcccccCCCCCcceeecCCCcccccCcccccCCCcccEEeCCCCccccccccchhccC-HHHHhcc Confidence 5566666666666666655431 0013455666666666665443 11 1245555 Q ss_pred -CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccch--------hhhhhh Q FBpp0305286 225 -SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFC--------QDFISS 293 (559) Q Consensus 225 -~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~--------~n~L~~ 293 (559) +|++|+|++|.++.++.. + .++|++|+++.|... .+..+..+++|+.|++++|.+.... .+.+.. T Consensus 178 ~~L~~L~Ls~n~l~~lp~~--~--~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 253 (802) T 3wpc_A 178 GNLTHLSLKYNNLTTVPRS--L--PPSLEYLLLSYNHIVTLAPEDLANLTALRVLDVGGNCRRCDHARNPCVECPHKFPQ 253 (802) T ss_dssp TTCCEEECCSSCCSSCCSS--C--CTTCSEEECTTSCCCEECGGGGTTCTTCSEEECTTSSCCGGGCSSCCCCCCTTCCE T ss_pred ccCCEEECCCCCCccCchh--h--cccCCEEECCCCcccccChhhhhhcccCcEEeCCCCCccccccccccccCcccccc Confidence 666666666666554432 1 156666666666433 2345666777777744444211000 002222 Q ss_pred h-cccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 294 Y-YTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 294 ~-~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) . +..+. ++++|+.|++ +|.+..++.. +..++.|++|++++|.+. T Consensus 254 ~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 300 (802) T 3wpc_A 254 LHSDTFS---HLSRLEGLVLKDSSLYQLNPRWFRGLGNLTVLDLSENFLY 300 (802) T ss_dssp ECTTTTT---TCTTCCEEECCSSCCSCCCGGGTTTCTTCCEEECTTSSCT T ss_pred CChhHcc---cccccceeECCCCccCccChhHhccccCCCEEECCCCccc Confidence 2 22222 5778888888 6666655432 456778888888888775No 194>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Probab=99.30 E-value=3.3e-12 Score=148.22 Aligned_cols=168 Identities=17% Similarity=0.108 Sum_probs=98.0 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+.+|+.|.+.+|.+... ....+..+++|++|+|++|+++.+.+. .+..+++|+.|+|++|+|+.++. ..+ T Consensus 288 ~l~~L~~L~L~~n~i~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~ 358 (844) T 3j0a_A 288 TLKDLKVLNLAYNKINKI------ADEAFYGLDNLQVLNLSYNLLGELYSS--NFYGLPKVAYIDLQKNHIAIIQD-QTF 358 (844) T ss_dssp SCCCCCEEEEESCCCCEE------CTTTTTTCSSCCEEEEESCCCSCCCSC--SCSSCTTCCEEECCSCCCCCCCS-SCS T ss_pred cCCCCCEEECCCCcCCCC------CHHHhcCCccCCEEECCCCCCcccCHh--HhcCCCCCCEEECCCCCcCCcCh-hhh Confidence 456666777766665532 112335677777777777777665432 24667777777777777766653 345 Q ss_pred CCC-CccEEEeecCcCCCcc---------------------------------------hhHHhccCCCccEEeCCCCcC Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLS---------------------------------------VDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~---------------------------------------~~~il~~lp~L~~Ldl~~N~~ 261 (559) .++ +|++|+|++|.+.+.. ....+..+|+|+.|++++|.+ T Consensus 359 ~~l~~L~~L~L~~n~l~~l~~~~~L~~L~l~~n~l~~l~~~~~~l~~L~ls~n~l~~~~~~~~~~~l~~L~~L~L~~N~l 438 (844) T 3j0a_A 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844) T ss_dssp CSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC T ss_pred hcCCCCCEEECCCCCCCcccCCCCccceecCCCCccccccccccccccccccCcccccchhhhhhcCccCCEEECCCCcc Confidence 555 6666666666554321 111134677888888887754 Q ss_pred CC---chhccCCCCcccccCCCCCCc---------------------cchhhhhhhhcccccCcccccccccccc-ccce Q FBpp0305286 262 ES---TEAVDNIPKSQQLQGGGTNGL---------------------KFCQDFISSYYTFFDDTEERFKLKKYYD-DQAM 316 (559) Q Consensus 262 ~~---~~~~~~lp~Lk~L~l~~~~l~---------------------~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l 316 (559) .. ...+..+++|+.|++++|.+. ++++|.++..+..... ++++|+.|++ .|.+ T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l 516 (844) T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS--HLTALRGLSLNSNRL 516 (844) T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS--SCCSCSEEEEESCCC T ss_pred cccccccccccCCcceeEEcCCcccchhhccccchhhhcCCCcCcEEECCCCcCCccChhHhc--ccccccEEECCCCcC Confidence 32 112333455555544443321 5667777776653322 6788888888 7766 Q ss_pred eeee Q FBpp0305286 317 FSLS 320 (559) Q Consensus 317 ~sl~ 320 (559) ..++ T Consensus 517 ~~l~ 520 (844) T 3j0a_A 517 TVLS 520 (844) T ss_dssp SSCC T ss_pred CccC Confidence 6544No 195>4nkh_A E3 ubiquitin-protein ligase SSPH1; leucine-rich repeat, E3 ligase substrate interaction domain,; 2.75A {Salmonella enterica subsp} PDB: 4nkg_A Probab=99.30 E-value=1.2e-11 Score=121.47 Aligned_cols=133 Identities=23% Similarity=0.258 Sum_probs=108.6 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCC-CCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISAN-RIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N-~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) ++|++|+|++|+|+.++. .+++|+.|+|++| .++.++. .+ +|++|++++|.+..++. .+++| T Consensus 57 ~~L~~L~l~~n~l~~l~~------~~~~L~~L~l~~n~~i~~l~~-----~~~~L~~L~l~~n~l~~l~~-----~~~~L 120 (239) T 4nkh_A 57 PHITTLVIPDNNLTSLPE------LPEGLRELEVSGNLQLTSLPS-----LPQGLQKLWAYNNWLASLPT-----LPPGL 120 (239) T ss_dssp TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCTTCCCCCC-----CCTTCCEEECCSSCCSCCCC-----CCTTC T ss_pred cCCCEEECcCCccccccc------ccccCCEEECCCCCCcccccc-----ccccCCEEECCCCcccCcCc-----cCCCC Confidence 789999999999998765 6789999999999 9998873 56 99999999999988654 67999 Q ss_pred cEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccc Q FBpp0305286 252 KNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYG 330 (559) Q Consensus 252 ~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~ 330 (559) ++|++++|.+...+ ..+++|+.| ++++|.++.++. .+++|+.|++ .|.+.+++. .++.|+ T Consensus 121 ~~L~l~~n~l~~l~--~~~~~L~~L--------~l~~n~l~~l~~------~~~~L~~L~l~~n~l~~l~~---~~~~L~ 181 (239) T 4nkh_A 121 GDLAVSNNQLTSLP--EMPPALREL--------RVSGNNLTSLPA------LPSGLQKLWAYNNRLTSLPE---MSPGLQ 181 (239) T ss_dssp CEEECCSSCCSCCC--CCCTTCCEE--------ECCSSCCCCCCC------CCTTCCEEECCSSCCSCCCC---CCTTCC T ss_pred CEEECcCCcccccc--ccCCcCCEE--------ECCCCcCCcCCc------ccccCCEEECcCCcCCcccc---ccCcCC Confidence 99999999765543 256899999 566666655443 4788999999 787776654 567999 Q ss_pred eeecCCccccC Q FBpp0305286 331 YKLYNRNQKRQ 341 (559) Q Consensus 331 ~L~ls~N~i~~ 341 (559) +|++++|.++. T Consensus 182 ~L~L~~n~l~~ 192 (239) T 4nkh_A 182 ELDVSHNQLTR 192 (239) T ss_dssp EEECCSSCCCS T ss_pred EEECcCCCCcc Confidence 99999999974No 196>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Probab=99.29 E-value=2e-11 Score=131.79 Aligned_cols=191 Identities=18% Similarity=0.077 Sum_probs=111.4 Q ss_pred cCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCcc--c--------------cccCCCCC Q FBpp0305286 139 DLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFA--G--------------NSQSFASL 202 (559) Q Consensus 139 dLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~--~--------------l~~~l~~L 202 (559) +++.+.+|+.|.+.+|..... . .+..+++|+.|++++|+|+.++-.. . -+..+++| T Consensus 143 ~~~~l~~L~~L~l~~n~~~~~--~------~~~~l~~L~~L~l~~n~l~~l~l~~~~~l~~l~l~~n~l~~l~l~~~~~L 214 (457) T 3bz5_A 143 DVSHNTQLTELDCHLNKKITK--L------DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQL 214 (457) T ss_dssp CCTTCTTCCEEECTTCSCCCC--C------CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTC T ss_pred eccCCCcCCEEEccCCCcccc--c------cccccccCCEEECCCCCcceEECCCCcccCEEeCCCCccCeecCCCCCcC Confidence 455677777777776653211 1 1367888999999998888765110 0 02455777 Q ss_pred CEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCC-------ccEEeCCCCcCCCchhccCCCCcc Q FBpp0305286 203 ERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ-------LKNVHGCVQLGESTEAVDNIPKSQ 274 (559) Q Consensus 203 ~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~-------L~~Ldl~~N~~~~~~~~~~lp~Lk 274 (559) +.|+|++|+++.++ +..+ +|++|+|++|.+.+..+.. +..+.. |+.|++++|.....-....+++|+ T Consensus 215 ~~L~L~~n~l~~i~----~~~l~~L~~L~L~~n~l~~~~~~~-l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~ 289 (457) T 3bz5_A 215 TFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDVST-LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289 (457) T ss_dssp SEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCCTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCC T ss_pred CEEECCCCCccccc----cccCCccCEEEccCCcCceecccc-CCcCCEEECCCCCCcEEeCccCccccccchhhcCcCC Confidence 77777777777654 4566 7777777777777765332 333332 444444444322211123667777 Q ss_pred cccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCCChhh Q FBpp0305286 275 QLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFA 346 (559) Q Consensus 275 ~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~ 346 (559) .|++++|.........+......... +.++|+.|++ .|.+..+ +...++.|++|++++|.++....+. T Consensus 290 ~L~Ls~n~~~~~~~~~~~~L~~L~l~--~~~~L~~L~l~~n~l~~l--~l~~~~~L~~L~l~~N~l~~~p~l~ 358 (457) T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLS--QNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSSVG 358 (457) T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCT--TCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCBCTTGG T ss_pred EEECCCCCcccccccCCCCCCEEECC--CCCCCCEEECCCCccccc--chhhCCCCCEEECCCCCCccCccch Confidence 77555554222111112222111112 5677888888 6777664 4667788888999999887544333No 197>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Probab=99.28 E-value=4.5e-12 Score=147.45 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=58.4 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) .+++|+.|.+.+|.+..+ +. ...+.++++|+.|+|++|+++.++. +..+++|+.|+|++|+++.++. .+ T Consensus 546 ~l~~L~~L~Ls~N~l~~i---p~--~~~l~~l~~L~~L~Ls~N~l~~ip~----l~~l~~L~~L~Ls~N~l~~ip~--~l 614 (876) T 4ecn_A 546 TGPKIQIFYMGYNNLEEF---PA--SASLQKMVKLGLLDCVHNKVRHLEA----FGTNVKLTDLKLDYNQIEEIPE--DF 614 (876) T ss_dssp TTTTCCEEECCSSCCCBC---CC--HHHHTTCTTCCEEECTTSCCCBCCC----CCTTSEESEEECCSSCCSCCCT--TS T ss_pred cCCCcCEEEccCCCCCCc---Cc--hhhhhcCCCCCEEECcCCCCCCccc----ccCCCCccEEEccCCcCCchhH--HH Confidence 444666666666655421 11 0012566666666666666665552 3566666666666666665553 45 Q ss_pred CCC-C-ccEEEeecCcCCCcchhHHhccCC--CccEEeCCCCcC Q FBpp0305286 222 NKL-S-CKTIFLAGNGLAKLSVDVIRKMLP--QLKNVHGCVQLG 261 (559) Q Consensus 222 ~~l-~-L~~L~L~~N~l~~~~~~~il~~lp--~L~~Ldl~~N~~ 261 (559) ..+ + |++|+|++|.++.++. . +..++ +|+.|++++|.+ T Consensus 615 ~~l~~~L~~L~Ls~N~l~~ip~-~-l~~~~~~~L~~L~Ls~N~l 656 (876) T 4ecn_A 615 CAFTDQVEGLGFSHNKLKYIPN-I-FNAKSVYVMGSVDFSYNKI 656 (876) T ss_dssp CEECTTCCEEECCSSCCCSCCS-C-CCTTCSSCEEEEECCSSCT T ss_pred hhccccceEEECCCCcCccchh-h-hhccccCCccEEEccCCcC Confidence 555 5 6666666666664332 1 33333 256666655543No 198>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Probab=99.28 E-value=4.4e-12 Score=142.76 Aligned_cols=155 Identities=9% Similarity=0.028 Sum_probs=118.2 Q ss_pred hhccCCCccEEEccCCcCCC------------------CcCcccccc--CCCCCCEEeCCCCCCC-CCCccCccCCC-Cc Q FBpp0305286 169 SNHLFPHVTSLVLSNNYLCS------------------LKAFAGNSQ--SFASLERLDISANRIQ-DLGELNYINKL-SC 226 (559) Q Consensus 169 i~~~l~~L~~L~Ls~N~L~~------------------l~~~~~l~~--~l~~L~~L~Ls~N~L~-~l~~l~~l~~l-~L 226 (559) .++++++|++|+|++|++++ +|.. +. .+++|+.|+|++|.+. .++. .+.++ +| T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~p~~~~~l~~~ip~~---l~~~~l~~L~~L~L~~n~~~~~ip~--~l~~l~~L 275 (636) T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED---LKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEM 275 (636) T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC---CCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSC T ss_pred hhhcCccchhhhccCCCCCCcccccccccchhhhhcccCccc---cccccccCCCEeEecCCccccccCH--HHhcCCCC Confidence 34789999999999999998 6654 35 8999999999999987 4553 78888 99 Q ss_pred cEEEeecCc-CCC-cchhHHhcc------CCCccEEeCCCCcCCCc-h--hccCCCCcccccCCCCCCccchhhhhh-hh Q FBpp0305286 227 KTIFLAGNG-LAK-LSVDVIRKM------LPQLKNVHGCVQLGEST-E--AVDNIPKSQQLQGGGTNGLKFCQDFIS-SY 294 (559) Q Consensus 227 ~~L~L~~N~-l~~-~~~~~il~~------lp~L~~Ldl~~N~~~~~-~--~~~~lp~Lk~L~l~~~~l~~L~~n~L~-~~ 294 (559) ++|+|++|. +++ ..+.. +.. +++|++|+++.|..... . .+..+++|+.| ++++|.+. .+ T Consensus 276 ~~L~L~~n~~l~g~~ip~~-l~~L~~~~~~~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L--------~Ls~n~l~g~i 346 (636) T 4eco_A 276 QLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML--------ECLYNQLEGKL 346 (636) T ss_dssp CEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEE--------ECCSCCCEEEC T ss_pred CEEeCccCcccccccchhh-HhhhhccccCCCcCEEECCCCCcccCCChhhhccCCCCCEE--------eCcCCcCceee Confidence 999999998 886 55544 444 49999999999966543 2 57889999999 55566665 44 Q ss_pred cccccCcccccccccccc-ccceeeeecCCcCccc-cceeecCCccccC Q FBpp0305286 295 YTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV-YGYKLYNRNQKRQ 341 (559) Q Consensus 295 ~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~-L~~L~ls~N~i~~ 341 (559) + .+. .+++|+.|++ .|.+..++.....++. |++|++++|.+.. T Consensus 347 p-~l~---~l~~L~~L~L~~n~l~~ip~~l~~l~~~L~~L~Ls~n~l~~ 391 (636) T 4eco_A 347 P-AFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391 (636) T ss_dssp C-CCE---EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS T ss_pred h-hhc---CCCCCCEEECCCCeeeeccHHHHhhcCcCCEEEccCCccch Confidence 4 332 5788888888 6767655444556677 8888888888763No 199>4mn8_B Brassinosteroid insensitive 1-associated receptor; FLS2, BAK1, flagellin, plant immunity, leucine-rich R transferase-transferase receptor complex; HET: NAG; 3.06A {Arabidopsis thaliana} PDB: 4m7e_D* Probab=99.27 E-value=8.2e-12 Score=122.40 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=75.1 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC-CCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ-DLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) .+++.|+|++|+|+..... .+..+++|+.|+|++|+|+ .++. .+..+ +|++|+|++|.+++..+.. +..+++| T Consensus 68 ~~l~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L 142 (226) T 4mn8_B 68 NSVTRVDLGNANLSGQLVM--QLGQLPNLQYLELYSNNITGTIPE--QLGNLTELVSLDLYLNNLSGPIPST-LGRLKKL 142 (226) T ss_dssp SCEEEEECTTCCCEEBCCG--GGGGCTTCCEEECCSSCCBSCCCG--GGGGCSSCCEEECCSSCCCSCCCGG-GGSCTTC T ss_pred CCEEEEECCCCCcCCcCCH--HHhcCCCCCEEEccCCccCCcCCH--HHhCCCCCCEEECcCCccCCcCChh-HhcCCCC Confidence 4566777777776643221 2356677777777777766 3332 56666 6777777777776655544 6667777 Q ss_pred cEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeee Q FBpp0305286 252 KNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLS 320 (559) Q Consensus 252 ~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~ 320 (559) ++|++++|.+. .+..+..+++|+.| ++++|.++...... . .+++|+.|++ +|.+..++ T Consensus 143 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L--------~Ls~N~l~~~~p~~-~--~l~~L~~L~L~~N~l~~iP 203 (226) T 4mn8_B 143 RFLRLNNNSLSGEIPRSLTAVLTLQVL--------DLSNNPLTGDIPVN-G--SFSLFTPISFANTKLTPLP 203 (226) T ss_dssp CEEECCSSCCCSCCCGGGGTSCCCSEE--------CCCSSCCCSCCCCS-S--SSTTCCSTTTSSSSCC--- T ss_pred CEEECcCCcCcCcccHHHhcCCCCCEE--------EeeCCcCcccCCCC-C--cCCCCCEEeCcCCCCCCCC Confidence 77777766543 23455666667777 44444444222211 1 4666777777 66665443No 200>4cp6_A Choline binding protein PCPA; leucine-rich repeat; 1.34A {Streptococcus pneumoniae} Probab=99.26 E-value=9.7e-12 Score=133.79 Aligned_cols=151 Identities=15% Similarity=0.066 Sum_probs=82.7 Q ss_pred hccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCC-----------------------------------CCCCC Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISA-----------------------------------NRIQD 214 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~-----------------------------------N~L~~ 214 (559) +.+|++|+.|+|++| ++.+++. .|.++++|+.|+|++ |.++. T Consensus 183 f~~~~~L~~L~L~~n-l~~i~~~--~f~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ipn~l~~ 259 (445) T 4cp6_A 183 FANLSNLEKLTLPKS-VKTLGSN--LFRLTTSLKHVDVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKE 259 (445) T ss_dssp TCSCSSCCEEEECTT-CCEECTT--TTTTCCCCSEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE T ss_pred cCCCCCCCEEEeCcc-ccEehhH--HhcCCCCCCEEEECCCCceEEecCCEEEeCCCCEEEEecCCCCcceEEecCceeE Confidence 355555555555553 5554432 235556666666665 55555 Q ss_pred CCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhh Q FBpp0305286 215 LGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFI 291 (559) Q Consensus 215 l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L 291 (559) +++ ..|.++ +|++|+|+ |.+.++.+.. +..+++|+.|++ .|.+. +...|..+++|+.| +++.| + T Consensus 260 i~~-~~f~~~~~L~~L~l~-n~l~~i~~~~-f~~~~~L~~L~l-~n~l~~i~~~~f~~~~~L~~L--------~L~~N-l 326 (445) T 4cp6_A 260 LAS-YSFNKNSYLKKLELN-EGLEKIGTFA-FADAIKLEEISL-PNSLETIERLAFYGNLELKEL--------ILPDN-V 326 (445) T ss_dssp ECT-TTTTTCCSCCEEECC-TTCCEECTTT-TTTCCSCCEEEC-CTTCCEECTTSEESCTTCCEE--------EECTT-C T ss_pred ech-hhccCCCCCeEEEeC-CCccEehHHh-hhCCCCCCEEEE-CCcccEEcHhhhhCCcCCCEE--------EeCCC-h Confidence 542 345555 56666666 5565555544 556666666666 44322 33445566666666 45555 5 Q ss_pred hhhcc-cccCccccccccccccccceeeeecCC-cC-ccccceeecCCccc Q FBpp0305286 292 SSYYT-FFDDTEERFKLKKYYDDQAMFSLSVPV-QL-NYVYGYKLYNRNQK 339 (559) Q Consensus 292 ~~~~~-~~d~~~~l~~L~~L~l~N~l~sl~~~~-~~-~~~L~~L~ls~N~i 339 (559) +.++. .|. ++++|+.|++.+++.+++... .. ++.|++|++++|.+ T Consensus 327 ~~i~~~~f~---~~~~L~~L~L~~Nl~~i~~~~f~~cL~~L~~L~L~~N~~ 374 (445) T 4cp6_A 327 KNFGKHVMN---GLPKLKSLTIGNNINSLPSFFLSGVLDSLKEIHIKNKST 374 (445) T ss_dssp CEECTTCEE---CCTTCCEEEECTTCCEECTTCEESCCTTCCEEEECCCCT T ss_pred heehhhHhh---CCCCCCEEEECCCccEeChhhhhChhhhccEEEecCCce Confidence 44443 232 567777777733355554332 34 47777777777773No 201>4arn_A TOLL receptor, variable lymphocyte receptor B.61; immune system, cytokine receptor, embryonic development, INN immunity; HET: NAG FUC BMA MAN; 2.41A {Drosophila melanogaster} PDB: 4arr_A* Probab=99.26 E-value=6.3e-12 Score=126.36 Aligned_cols=127 Identities=14% Similarity=0.228 Sum_probs=79.3 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcC-CCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYL-CSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L-~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) +.+++.|.+..+.+...+.+...... ..+++|++|++++|++ ..++.. .+..+++|+.|+|++|+++.++. ..+ T Consensus 69 ~~~l~~L~l~~~~l~~~~~l~~l~~~--~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~ 143 (279) T 4arn_A 69 IGEVDRVQMRRCMLPGHTPIASILDY--LGIVSPTTLIFESDNLGMNITRQ--HLDRLHGLKRFRFTTRRLTHIPA-NLL 143 (279) T ss_dssp CEECSEEEEESCCCCSSSCTHHHHHH--TTEECCSEEEEECSCCCSCCCGG--GGTTCTTCSEEEEECSSCCCCCT-TTT T ss_pred ccccceEeeeeecCCCCCcHhHhHhh--cCCCCcceeeeccCCcccccCHH--HhcCCCCCCEEECCCCCCCccCh-hHh Confidence 45566666655544222222222222 2377888888888777 444432 24677888888888888887763 346 Q ss_pred CCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccc Q FBpp0305286 222 NKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQL 276 (559) Q Consensus 222 ~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L 276 (559) ..+ +|++|+|++| +...+... +..+++|+.|++++|.+.. ...+..+++|+.| T Consensus 144 ~~l~~L~~L~L~~n-~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 199 (279) T 4arn_A 144 TDMRNLSHLELRAN-IEEMPSHL-FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQL 199 (279) T ss_dssp TTCTTCCEEEEESC-CCCCCTTT-TTTCCCCCEEECCSSCCCCCCTTTTTTCSSCCEE T ss_pred cccCCCCEEECCCC-cccCChhh-cccCCCCCEEECCCCccccCCHHHhcCCCCCCEE Confidence 777 8888888888 66666554 6777888888887775432 2334556666666No 202>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Probab=99.25 E-value=1.7e-11 Score=136.23 Aligned_cols=155 Identities=19% Similarity=0.116 Sum_probs=116.4 Q ss_pred CCccccccccCCcchhhhHHHHHHhhccCCCccEEE-ccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCC Q FBpp0305286 145 ASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLV-LSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 223 (559) Q Consensus 145 ~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~-Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~ 223 (559) +++.|.+.+|.+..+ + ..+++|++|+ |++|+|+.++ ..+++|+.|+|++|+|+.++. . T Consensus 60 ~L~~L~Ls~n~l~~i---p-------~~l~~L~~L~~Ls~N~l~~ip------~~l~~L~~L~Ls~N~l~~lp~-----~ 118 (571) T 3cvr_A 60 QFSELQLNRLNLSSL---P-------DNLPPQITVLEITQNALISLP------ELPASLEYLDACDNRLSTLPE-----L 118 (571) T ss_dssp TCSEEECCSSCCSCC---C-------SCCCTTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-----C T ss_pred CCCEEEecCCCCCcC---C-------CCCCChhHHHhhhCCCcCCcC------CCCCCCCEEECcCCcCCCCCC-----c Confidence 355555666766532 1 1789999999 9999999977 367899999999999998884 6 Q ss_pred C-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcc Q FBpp0305286 224 L-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTE 302 (559) Q Consensus 224 l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~ 302 (559) + +|++|+|++|.+++++. .+++|+.|++++|.+...+. .+++|+.| ++++|.++.++. + T Consensus 119 l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~--~~~~L~~L--------~Ls~N~l~~lp~-l---- 178 (571) T 3cvr_A 119 PASLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE--LPTSLEVL--------SVRNNQLTFLPE-L---- 178 (571) T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEE--------ECCSSCCSCCCC-C---- T ss_pred CCCCCEEECCCCccCCCCc-----ccccCCEEECCCCcCCCCCc--ccchhcEE--------ECCCCCCCcccc-c---- Confidence 7 99999999999998654 35899999999997655432 34889999 666666666655 2 Q ss_pred cccccccccc-ccceeeeec---CCcCccccceee-cCCccccC Q FBpp0305286 303 ERFKLKKYYD-DQAMFSLSV---PVQLNYVYGYKL-YNRNQKRQ 341 (559) Q Consensus 303 ~l~~L~~L~l-~N~l~sl~~---~~~~~~~L~~L~-ls~N~i~~ 341 (559) . ++|+.|++ .|.+..++. ....++.|++|+ +++|.++. T Consensus 179 ~-~~L~~L~Ls~N~l~~lp~lp~~l~~l~~L~~L~iLs~N~l~~ 221 (571) T 3cvr_A 179 P-ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221 (571) T ss_dssp C-TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC T ss_pred c-CCCCEEEeeCCcCCCCccchHHHhcCchhhhhhhccCCCCCc Confidence 3 78999999 787777543 346678999999 99999984No 203>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Probab=99.25 E-value=7.5e-12 Score=115.33 Aligned_cols=133 Identities=23% Similarity=0.160 Sum_probs=103.8 Q ss_pred CCCCCccccccccCCc--chhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC-CCcc Q FBpp0305286 142 RFHASPELSLHFCPLH--MVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD-LGEL 218 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~--~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~-l~~l 218 (559) .+++++.|.+.+|.+. .+ ...+..+++|++|+|++|+++.++.+ ..+++|+.|+|++|.++. ++. T Consensus 22 ~~~~L~~L~l~~~~i~~~~l-------~~~~~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~L~~n~i~~~~~~- 89 (168) T 2ell_A 22 TPAAVRELVLDNCKSNDGKI-------EGLTAEFVNLEFLSLINVGLISVSNL----PKLPKLKKLELSENRIFGGLDM- 89 (168) T ss_dssp CTTSCSEEECCSCBCBTTBC-------SSCCGGGGGCCEEEEESSCCCCCSSC----CCCSSCCEEEEESCCCCSCCCH- T ss_pred cCCCccEEEecCCCCchhHH-------HHHHhhCCccCEEEcccccCccchhh----ccCCCCCEEeccCCcccchHHH- Confidence 3556666777677665 22 12336789999999999999997753 789999999999999998 553 Q ss_pred CccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-----hhccCCCCcccccCCCCCCccchhhhhh Q FBpp0305286 219 NYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-----EAVDNIPKSQQLQGGGTNGLKFCQDFIS 292 (559) Q Consensus 219 ~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-----~~~~~lp~Lk~L~l~~~~l~~L~~n~L~ 292 (559) .+..+ +|++|+|++|.+........+..+++|+.|++++|.+... ..+..+++|+.| ++.+|.+. T Consensus 90 -~~~~~~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~~~L~~L--------~l~~n~~~ 160 (168) T 2ell_A 90 -LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL--------DGYDREDQ 160 (168) T ss_dssp -HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE--------TTEETTSC T ss_pred -HHhhCCCCCEEECCCCCCCcchhHHHHhcCCcCCEEeccCCcCCCHHHHHHHHHHHCCCcEEe--------eCCcCCCc Confidence 56778 9999999999999876523389999999999999976543 357889999999 66666665 Q ss_pred hhc Q FBpp0305286 293 SYY 295 (559) Q Consensus 293 ~~~ 295 (559) .++ T Consensus 161 ~~~ 163 (168) T 2ell_A 161 EAP 163 (168) T ss_dssp BCC T ss_pred ccc Confidence 544No 204>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Probab=99.25 E-value=1.3e-11 Score=133.08 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=12.4 Q ss_pred cCCCCccccccccCchhHHh Q FBpp0305286 103 TPGLPKSMMCAQITDEFTTA 122 (559) Q Consensus 103 ~p~~p~~~~~l~l~~~~i~~ 122 (559) .|.+|+..+.++++.+.+.. T Consensus 86 l~~~~~~L~~L~l~~n~l~~ 105 (454) T 1jl5_A 86 LPELPPHLESLVASCNSLTE 105 (454) T ss_dssp CCSCCTTCSEEECCSSCCSS T ss_pred cccCCCCCcEEEccCCccCc Confidence 35566666667777766544No 205>4arn_A TOLL receptor, variable lymphocyte receptor B.61; immune system, cytokine receptor, embryonic development, INN immunity; HET: NAG FUC BMA MAN; 2.41A {Drosophila melanogaster} PDB: 4arr_A* Probab=99.25 E-value=2.7e-11 Score=121.76 Aligned_cols=156 Identities=11% Similarity=0.103 Sum_probs=116.1 Q ss_pred cCCCccEEEccCCcC------CCCcCccccccCCCCCCEEeCCCCCC-CCCCccCccCCC-CccEEEeecCcCCCcchhH Q FBpp0305286 172 LFPHVTSLVLSNNYL------CSLKAFAGNSQSFASLERLDISANRI-QDLGELNYINKL-SCKTIFLAGNGLAKLSVDV 243 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L------~~l~~~~~l~~~l~~L~~L~Ls~N~L-~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~ 243 (559) .+++|+.|+++++.+ ..++.. .++++|+.|++++|.+ ..++. ..+.++ +|++|+|++|.+..++... T Consensus 68 ~~~~l~~L~l~~~~l~~~~~l~~l~~~----~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 142 (279) T 4arn_A 68 RIGEVDRVQMRRCMLPGHTPIASILDY----LGIVSPTTLIFESDNLGMNITR-QHLDRLHGLKRFRFTTRRLTHIPANL 142 (279) T ss_dssp CCEECSEEEEESCCCCSSSCTHHHHHH----TTEECCSEEEEECSCCCSCCCG-GGGTTCTTCSEEEEECSSCCCCCTTT T ss_pred CccccceEeeeeecCCCCCcHhHhHhh----cCCCCcceeeeccCCcccccCH-HHhcCCCCCCEEECCCCCCCccChhH Confidence 466788888855555 333332 2588999999999987 45653 358888 9999999999999777654 Q ss_pred HhccCCCccEEeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeee Q FBpp0305286 244 IRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLS 320 (559) Q Consensus 244 il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~ 320 (559) +..+++|+.|++++| ... ...+..+++|+.| ++++|.++.++..... .+++|+.|++ +|.+..++ T Consensus 143 -~~~l~~L~~L~L~~n-~~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~ 210 (279) T 4arn_A 143 -LTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI--------EFGSNKLRQMPRGIFG--KMPKLKQLNLASNQLKSVP 210 (279) T ss_dssp -TTTCTTCCEEEEESC-CCCCCTTTTTTCCCCCEE--------ECCSSCCCCCCTTTTT--TCSSCCEEECCSSCCSCCC T ss_pred -hcccCCCCEEECCCC-cccCChhhcccCCCCCEE--------ECCCCccccCCHHHhc--CCCCCCEEECCCCcCCccC Confidence 788999999999999 433 3347788999999 5555555555443222 5889999999 88877766 Q ss_pred cCC-cCccccceeecCCccccCCCh Q FBpp0305286 321 VPV-QLNYVYGYKLYNRNQKRQHSS 344 (559) Q Consensus 321 ~~~-~~~~~L~~L~ls~N~i~~~~~ 344 (559) ... ..++.|++|++++|.+.+... T Consensus 211 ~~~~~~l~~L~~L~l~~N~l~~~~~ 235 (279) T 4arn_A 211 DGIFDRLTSLQKIWLHTNPWDCSCP 235 (279) T ss_dssp TTTTTTCTTCCEEECCSSCBCCCTT T ss_pred HHHhcccccCCEEEeECCCcccCCc Confidence 543 677899999999999987654No 206>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Probab=99.24 E-value=1.3e-11 Score=115.01 Aligned_cols=99 Identities=15% Similarity=0.201 Sum_probs=63.1 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|+|++|+++.++.. +..+++|+.|+|++|.|+.++ .+..+ +|++|+|++|.+++.++.. +..++ T Consensus 16 ~~~~~L~~L~l~~n~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~ 88 (176) T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNNRICRIGEGL-DQALP 88 (176) T ss_dssp ECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEEC---CCCCCSSCCEEECCSSCCCEECSCH-HHHCT T ss_pred cCcCCceEEEccCCCcCCcchh---hccCCcCCEEECCCCcccccc---CccccCCCCEEECCCCeeecCchhh-hccCC Confidence 4566777777777777766443 345677777777777776664 45666 6777777777776655442 45677 Q ss_pred CccEEeCCCCcCCC---chhccCCCCcccc Q FBpp0305286 250 QLKNVHGCVQLGES---TEAVDNIPKSQQL 276 (559) Q Consensus 250 ~L~~Ldl~~N~~~~---~~~~~~lp~Lk~L 276 (559) +|+.|++++|.+.. ...+..+++|+.| T Consensus 89 ~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L 118 (176) T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176) T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEE T ss_pred CCCEEEccCCCcCchHHHHHHhcCCCCCEE Confidence 77777777765543 2345566666666No 207>4mn8_B Brassinosteroid insensitive 1-associated receptor; FLS2, BAK1, flagellin, plant immunity, leucine-rich R transferase-transferase receptor complex; HET: NAG; 3.06A {Arabidopsis thaliana} PDB: 4m7e_D* Probab=99.24 E-value=1.9e-11 Score=119.74 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=99.3 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCC-CCCccCccC Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQ-DLGELNYIN 222 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~~l~ 222 (559) .+++.|.+.++.+... +...+..+++|++|+|++|+|+...+. .+..+++|+.|+|++|+|+ .++. .+. T Consensus 68 ~~l~~L~L~~n~l~~~------~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~--~l~ 137 (226) T 4mn8_B 68 NSVTRVDLGNANLSGQ------LVMQLGQLPNLQYLELYSNNITGTIPE--QLGNLTELVSLDLYLNNLSGPIPS--TLG 137 (226) T ss_dssp SCEEEEECTTCCCEEB------CCGGGGGCTTCCEEECCSSCCBSCCCG--GGGGCSSCCEEECCSSCCCSCCCG--GGG T ss_pred CCEEEEECCCCCcCCc------CCHHHhcCCCCCEEEccCCccCCcCCH--HHhCCCCCCEEECcCCccCCcCCh--hHh Confidence 5677888888877621 222347899999999999999954322 2578999999999999999 4553 688 Q ss_pred CC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC-CchhccCCCCcccccCCCCCC Q FBpp0305286 223 KL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE-STEAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~-~~~~~~~lp~Lk~L~l~~~~l 283 (559) .+ +|++|+|++|.+++..+.. +..+++|+.|++++|.+. .......+++|+.|++++|.+ T Consensus 138 ~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~N~l 199 (226) T 4mn8_B 138 RLKKLRFLRLNNNSLSGEIPRS-LTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKL 199 (226) T ss_dssp SCTTCCEEECCSSCCCSCCCGG-GGTSCCCSEECCCSSCCCSCCCCSSSSTTCCSTTTSSSSC T ss_pred cCCCCCEEECcCCcCcCcccHH-HhcCCCCCEEEeeCCcCcccCCCCCcCCCCCEEeCcCCCC Confidence 88 9999999999999877766 899999999999999764 233336789999994444433No 208>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Probab=99.24 E-value=5.6e-12 Score=146.64 Aligned_cols=154 Identities=9% Similarity=0.020 Sum_probs=109.1 Q ss_pred hccCCCccEEEccCCcCCC------------------CcCcccc-ccCCCCCCEEeCCCCCCC-CCCccCccCCC-CccE Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCS------------------LKAFAGN-SQSFASLERLDISANRIQ-DLGELNYINKL-SCKT 228 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~------------------l~~~~~l-~~~l~~L~~L~Ls~N~L~-~l~~l~~l~~l-~L~~ 228 (559) +.++++|++|+|++|+|+. +|.. + +..+++|+.|+|++|.+. .+|. .+.++ +|++ T Consensus 444 l~~L~~L~~L~Ls~N~l~g~~~~~~~ip~~l~~l~g~iP~~--l~f~~L~~L~~L~Ls~n~l~~~ip~--~l~~L~~L~~ 519 (876) T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE--LSWSNLKDLTDVELYNCPNMTQLPD--FLYDLPELQS 519 (876) T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC--CCGGGCTTCCEEEEESCTTCCSCCG--GGGGCSSCCE T ss_pred HhCCCCccEEEccCCcCCCCcccccccccccccccccCchh--hhhccCCCCCEEECCCCcCCCcChH--HHhCCCCCcE Confidence 4788899999999999888 6553 1 237889999999999877 4553 67888 8999 Q ss_pred EEeecCc-CCC-cchhHHhc-------cCCCccEEeCCCCcCCCc-h--hccCCCCcccccCCCCCCccchhhhhhhhcc Q FBpp0305286 229 IFLAGNG-LAK-LSVDVIRK-------MLPQLKNVHGCVQLGEST-E--AVDNIPKSQQLQGGGTNGLKFCQDFISSYYT 296 (559) Q Consensus 229 L~L~~N~-l~~-~~~~~il~-------~lp~L~~Ldl~~N~~~~~-~--~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~ 296 (559) |+|++|. +++ ..+.. +. .+++|+.|++++|.+... . .+..+++|+.| ++++|.+..++ T Consensus 520 L~Ls~N~~lsg~~iP~~-l~~L~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~l~~L~~L--------~Ls~N~l~~ip- 589 (876) T 4ecn_A 520 LNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL--------DCVHNKVRHLE- 589 (876) T ss_dssp EECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEE--------ECTTSCCCBCC- T ss_pred EECCCCCCCcCCcchHH-HHhhhhccccCCCcCEEEccCCCCCCcCchhhhhcCCCCCEE--------ECcCCCCCCcc- Confidence 9999998 876 44333 33 455899999988865433 2 47788888888 55555555444 Q ss_pred cccCcccccccccccc-ccceeeeecCCcCccc-cceeecCCcccc Q FBpp0305286 297 FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYV-YGYKLYNRNQKR 340 (559) Q Consensus 297 ~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~-L~~L~ls~N~i~ 340 (559) .+. .+++|+.|++ .|.+..++.....++. |++|++++|.+. T Consensus 590 ~l~---~l~~L~~L~Ls~N~l~~ip~~l~~l~~~L~~L~Ls~N~l~ 632 (876) T 4ecn_A 590 AFG---TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876) T ss_dssp CCC---TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC T ss_pred ccc---CCCCccEEEccCCcCCchhHHHhhccccceEEECCCCcCc Confidence 332 5778888888 6666655444455666 888888888776No 209>4hq1_A Probable receptor protein kinase TMK1; receptor-like kinase, transferase; HET: NAG BMA MAN FUC; 1.55A {Arabidopsis thaliana} Probab=99.24 E-value=1.2e-11 Score=133.97 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=132.3 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYIN 222 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~ 222 (559) ...++.|.+.++.+... +...+..+++|++|+|++|.++...+. +..+++|+.|+|++|+|+.++. ..+. T Consensus 63 ~~~l~~L~L~~~~l~~~------~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~l~~L~~L~Ls~n~l~~i~~-~~~~ 132 (475) T 4hq1_A 63 TKRVTRIQIGHSGLQGT------LSPDLRNLSELERLELQWNNISGPVPS---LSGLASLQVLMLSNNNFDSIPS-DVFQ 132 (475) T ss_dssp TCCEEEEECTTSCCCSB------CCGGGGGCTTCCEEECCSSCCEEECCC---CTTCTTCCEEECCSSEEEECCT-TTTT T ss_pred CCCEEEEECCCCCcCcc------CChHHhcCCCCCEEECcCCcccccCCc---cccCCCCCEEECcCCcCCCcCh-HHHc Confidence 34566666666665521 112347899999999999999876543 4889999999999999998874 4688 Q ss_pred CC-CccEEEeecCcCCC-cchhHHhccCCCccEEeCCCCcCC--Cchhcc--CCCCcccccCCCCCCccchhhhhhhh-c Q FBpp0305286 223 KL-SCKTIFLAGNGLAK-LSVDVIRKMLPQLKNVHGCVQLGE--STEAVD--NIPKSQQLQGGGTNGLKFCQDFISSY-Y 295 (559) Q Consensus 223 ~l-~L~~L~L~~N~l~~-~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~--~lp~Lk~L~l~~~~l~~L~~n~L~~~-~ 295 (559) ++ +|++|+|++|.+.. ..+.. +..+++|+.|+++.|... .+..+. .+++|+.| +++.|.+... + T Consensus 133 ~l~~L~~L~L~~n~l~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L--------~L~~n~l~~~~~ 203 (475) T 4hq1_A 133 GLTSLQSVEIDNNPFKSWEIPES-LRNASALQNFSANSANVSGSLPGFLGPDEFPGLSIL--------HLAFNNLEGELP 203 (475) T ss_dssp TCTTCCEEECCSCCCCSBCCCGG-GGGCTTCCEEECTTSCBEEECCGGGSTTTCTTCCEE--------ECTTSEEEEECC T ss_pred cCCCCCEEECcCCcCCCCCCChH-HhcccccceeEccCceecCcCChhhhhccCCCCCEE--------ECCCCccCCcCC Confidence 89 99999999999984 33444 889999999999998653 344555 88999999 6666666533 3 Q ss_pred ccccCcccccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 296 TFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 296 ~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) ..+. . ++|+.|++ .|.+.........++.|++|++++|.+. T Consensus 204 ~~~~---~-~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~L~~n~l~ 245 (475) T 4hq1_A 204 MSLA---G-SQVQSLWLNGQKLTGDITVLQNMTGLKEVWLHSNKFS 245 (475) T ss_dssp GGGT---T-CCCSEEECCSSEEEECCGGGGGCTTCSEEECCSSEEE T ss_pred hhHh---c-CCcceEECccccCCCCchhhhcCCCCCEEEeeCCeee Confidence 3332 3 88999999 6666555433467789999999999986No 210>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Probab=99.22 E-value=2.8e-11 Score=136.00 Aligned_cols=34 Identities=24% Similarity=0.057 Sum_probs=15.3 Q ss_pred ccccccccc-ccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 304 RFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 304 l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) +++|+.|++ +|.+.+++. .+++|++|++++|.+. T Consensus 240 l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~Ls~N~l~ 274 (622) T 3g06_A 240 PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT 274 (622) T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC T ss_pred cccchheeCCCCCcCCCCc---cCCcCcEEecCCCCcc Confidence 444555555 444443322 3344555555555444No 211>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Probab=99.19 E-value=6.8e-11 Score=112.41 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=42.6 Q ss_pred cEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEe Q FBpp0305286 177 TSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVH 255 (559) Q Consensus 177 ~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ld 255 (559) ++|++++|+|+.++.. -.++|+.|+|++|+|+.++....|..+ +|++|+|++|.+.+..+.. +..+++|+.|+ T Consensus 11 ~~l~~s~n~l~~ip~~-----~~~~l~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~ 84 (192) T 1w8a_A 11 TTVDCTGRGLKEIPRD-----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQ 84 (192) T ss_dssp TEEECTTSCCSSCCSC-----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEE T ss_pred CEEECCCCCCCcCCCC-----CCCCCcEEECCCCccCccCCchhhccCCCCCEEECCCCcCCccCHHH-ccCcccCCEEE Confidence 4566666666655542 124556666666666555532125555 5666666666665554444 55555555555 Q ss_pred CCCCcC Q FBpp0305286 256 GCVQLG 261 (559) Q Consensus 256 l~~N~~ 261 (559) +++|.+ T Consensus 85 Ls~N~l 90 (192) T 1w8a_A 85 LGENKI 90 (192) T ss_dssp CCSCCC T ss_pred CCCCcC Confidence 555543No 212>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Probab=99.19 E-value=1.7e-11 Score=139.74 Aligned_cols=181 Identities=16% Similarity=0.070 Sum_probs=102.0 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) +..+.+|+.|.+.+|.+..... ......+..++.|+.|+|++|+|..++.. +..+++|+.|+|++|.|+.++. T Consensus 192 ~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~i~~l~~~---~~~l~~L~~L~l~~n~l~~l~~-- 264 (727) T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISAN---IFKYDFLTRLYLNGNSLTELPA-- 264 (727) T ss_dssp --------------------------------CCCCCCEEECTTSCCSCCCGG---GGGCCSCSCCBCTTSCCSCCCG-- T ss_pred HhcCCCCCEEECcCCccccccc--eecccccccCCcceEEECCCCCcCccCHh---hcCCCCCCEEEeCCCcCcchhH-- Confidence 3456777777777765432111 12233457889999999999999988765 2589999999999999998875 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhh-cc Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSY-YT 296 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~-~~ 296 (559) .+..+ +|++|+|++|.|+.++.. +..+++|+.|++++|.+... ..+..+++|+.|++ ++|.|... +. T Consensus 265 ~~~~l~~L~~L~L~~n~l~~lp~~--~~~l~~L~~L~l~~n~l~~l~~~~~~l~~L~~L~l--------~~N~l~~~~~~ 334 (727) T 4b8c_D 265 EIKNLSNLRVLDLSHNRLTSLPAE--LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGV--------EGNPLEKQFLK 334 (727) T ss_dssp GGGGGTTCCEEECTTSCCSSCCSS--GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEEC--------TTSCCCSHHHH T ss_pred HhhcCCCCCEEECcCCcCcchhhh--hccCCCcCEEECCCCcCCCcCHhHcCCcceeEEEC--------cCCcCCCcchH Confidence 68888 999999999999966543 78999999999999976543 23788999999944 44444432 22 Q ss_pred cccCcccccccccccc-ccceeeeecCCcCccccceeecCCccccCC Q FBpp0305286 297 FFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYKLYNRNQKRQH 342 (559) Q Consensus 297 ~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~ 342 (559) .+.. ....+..|++ +|.+ +..+|... ....+++++|.+... T Consensus 335 ~~~~--~~~~~~~l~l~~N~~-~~~~p~~~--~~~~l~~~gn~~~~~ 376 (727) T 4b8c_D 335 ILTE--KSVTGLIFYLRDNRP-EIPLPHER--RFIEINTDGEPQREY 376 (727) T ss_dssp HHHH--HHHHHHHHHHHHCCC-CCCCCCC------------------ T ss_pred Hhhh--ccccchhhhhccccc-cccCcccc--ccccccccccccccc Confidence 2221 2455667889 5554 44444321 233455667766543No 213>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Probab=99.19 E-value=5.8e-11 Score=133.37 Aligned_cols=184 Identities=18% Similarity=0.072 Sum_probs=87.3 Q ss_pred CCCccccccccCchhHHhHHHHHhcccccccccccCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC Q FBpp0305286 105 GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN 184 (559) Q Consensus 105 ~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N 184 (559) .+++..+.++++.+.+..++. .+.+|+.|.+.+|.+..+. ..+++|++|+|++| T Consensus 58 ~~~~~L~~L~Ls~n~l~~l~~----------------~l~~L~~L~Ls~n~l~~l~----------~~l~~L~~L~L~~n 111 (622) T 3g06_A 58 CLPAHITTLVIPDNNLTSLPA----------------LPPELRTLEVSGNQLTSLP----------VLPPGLLELSIFSN 111 (622) T ss_dssp CCCTTCSEEEECSCCCSCCCC----------------CCTTCCEEEECSCCCSCCC----------CCCTTCCEEEECSC T ss_pred hhCCCCcEEEecCCCCCcCCc----------------cCCCCCEEEeeCCcCCCCC----------CCCCCCCEEECcCC Confidence 455555666666665543321 2344555555555443221 14455555555555 Q ss_pred cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC Q FBpp0305286 185 YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES 263 (559) Q Consensus 185 ~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~ 263 (559) +|+.++. .+++|+.|+|++|+|+.++. .+ +|++|++++|.+..++. .+++|+.|++++|.+.. T Consensus 112 ~l~~l~~------~l~~L~~L~L~~n~l~~l~~-----~l~~L~~L~Ls~n~l~~l~~-----~~~~L~~L~L~~n~l~~ 175 (622) T 3g06_A 112 PLTHLPA------LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQLTS 175 (622) T ss_dssp CCCCCCC------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC T ss_pred CCCCCCc------cCCCCCEEEccCCcCCCCCc-----cCCcCCEEEeeCCCCCCCcc-----ccCCCCEEECcCCCCCc Confidence 5555433 33455555555555554442 12 44555555554444321 12344444444443322 Q ss_pred chhccCCCCcccccCCCCCCc------------cchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCccccc Q FBpp0305286 264 TEAVDNIPKSQQLQGGGTNGL------------KFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYG 330 (559) Q Consensus 264 ~~~~~~lp~Lk~L~l~~~~l~------------~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~ 330 (559) .+ ..+++|+.|++++|.+. ++.+|.+..++. ..++|+.|++ .|.+..++ ..+++|+ T Consensus 176 l~--~~~~~L~~L~Ls~n~l~~l~~~~~~L~~L~L~~n~l~~l~~------~~~~L~~L~Ls~N~l~~i~---~~l~~L~ 244 (622) T 3g06_A 176 LP--MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTSLP---VLPSELK 244 (622) T ss_dssp CC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCC---CCCTTCC T ss_pred CC--ccCCCCeEEECCCCCccCccchhhhhhhhhhccCCCCcCCc------cCCCCCEEEccCCCCCCCC---cccccch Confidence 21 22334444422222211 333333333332 2456777777 66665544 3456777 Q ss_pred eeecCCccccC Q FBpp0305286 331 YKLYNRNQKRQ 341 (559) Q Consensus 331 ~L~ls~N~i~~ 341 (559) +|++++|.++. T Consensus 245 ~L~Ls~N~l~~ 255 (622) T 3g06_A 245 ELMVSGNRLTS 255 (622) T ss_dssp EEECCSSCCSC T ss_pred heeCCCCCcCC Confidence 77777777664No 214>4xos_A Acidic leucine-rich nuclear phosphoprotein 32 FAM A; leucine rich repeat tumor suppressor, component of the SET C antitumor protein; HET: GOL; 1.56A {Homo sapiens} PDB: 2je0_A 2je1_A Probab=99.17 E-value=3.2e-11 Score=109.57 Aligned_cols=126 Identities=22% Similarity=0.176 Sum_probs=97.6 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCC-CCccCc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQD-LGELNY 220 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~-l~~l~~ 220 (559) .+.+++.|.+.+|.+..- .++..+..+++|++|+|++|+++.++.+ ..+++|+.|+|++|.++. ++. . T Consensus 18 ~~~~L~~L~l~~~~l~~~-----~l~~~~~~~~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~Ls~n~i~~~~~~--~ 86 (152) T 4xos_A 18 TPSDVKELVLDNSRSNEG-----KLEGLTDEFEELEFLSTINVGLTSIANL----PKLNKLKKLELSDNRVSGGLEV--L 86 (152) T ss_dssp CGGGCSEEECTTCBCBTT-----BCCSCCTTCTTCCEEECTTSCCCCCTTC----CCCTTCCEEECCSSCCCSCTHH--H T ss_pred CCCcceEEEccCCcccHh-----HHHHHHhhCCCCCEEeCCCCCCCCchhh----hcCCCCCEEECCCCcccchHHH--H Confidence 356677777777766411 1112346889999999999999998654 789999999999999997 443 5 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-----hhccCCCCcccccC Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-----EAVDNIPKSQQLQG 278 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-----~~~~~lp~Lk~L~l 278 (559) +..+ +|++|++++|.+.+......+..+++|+.|++++|.+... ..+..+|+|+.|++ T Consensus 87 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~l~~L~~L~l 150 (152) T 4xos_A 87 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 150 (152) T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT T ss_pred HHhCCCCCEEECCCCcccchHHHHHHhcCCCCCEEECCCCCCCChHHHHHHHHHHCcccccccC Confidence 6778 9999999999999875322389999999999999966432 45778999999943No 215>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} SCOP: c.10.2.0 Probab=99.17 E-value=1e-10 Score=111.42 Aligned_cols=92 Identities=17% Similarity=0.083 Sum_probs=56.1 Q ss_pred cEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEe Q FBpp0305286 177 TSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVH 255 (559) Q Consensus 177 ~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ld 255 (559) +.+++++|+|+.+|.. -.++|+.|+|++|+|+.++. .+.++ +|++|+|++|.+.+..+.. +..+++|+.|+ T Consensus 13 ~~l~~s~~~l~~lp~~-----~~~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~Ls~N~i~~~~~~~-f~~l~~L~~L~ 84 (193) T 2wfh_A 13 TVVRCSNKGLKVLPKG-----IPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLI 84 (193) T ss_dssp TEEECTTSCCSSCCSC-----CCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEE T ss_pred CEEECCCCCccccCcc-----cCCCCcEEEecCCcCCccch--hhcCCCCCCEEECCCCcCCccCHhH-ccCCcCCCEEE Confidence 5667777777766653 12566777777777776653 46666 6777777777776666554 66666666666 Q ss_pred CCCCcCCC--chhccCCCCcccc Q FBpp0305286 256 GCVQLGES--TEAVDNIPKSQQL 276 (559) Q Consensus 256 l~~N~~~~--~~~~~~lp~Lk~L 276 (559) +++|.+.. ...+..+++|+.| T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L 107 (193) T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLL 107 (193) T ss_dssp CCSSCCCBCCTTTTTTCTTCCEE T ss_pred CCCCccCeeCHHHhCCCcCCCEE Confidence 66664432 2234455555555No 216>4cp6_A Choline binding protein PCPA; leucine-rich repeat; 1.34A {Streptococcus pneumoniae} Probab=99.17 E-value=3.6e-11 Score=129.39 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=120.9 Q ss_pred HhhccCCCccEEEccC-----------------------------------CcCCCCcCccccccCCCCCCEEeCCCCCC Q FBpp0305286 168 LSNHLFPHVTSLVLSN-----------------------------------NYLCSLKAFAGNSQSFASLERLDISANRI 212 (559) Q Consensus 168 ~i~~~l~~L~~L~Ls~-----------------------------------N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L 212 (559) ..+.++++|+.|++++ |.++.+++. .|..+++|+.|+|+ |.+ T Consensus 204 ~~f~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ipn~l~~i~~~--~f~~~~~L~~L~l~-n~l 280 (445) T 4cp6_A 204 NLFRLTTSLKHVDVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKELASY--SFNKNSYLKKLELN-EGL 280 (445) T ss_dssp TTTTTCCCCSEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTT--TTTTCCSCCEEECC-TTC T ss_pred HHhcCCCCCCEEEECCCCceEEecCCEEEeCCCCEEEEecCCCCcceEEecCceeEechh--hccCCCCCeEEEeC-CCc Confidence 3567899999999999 888888765 45889999999999 999 Q ss_pred CCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhh Q FBpp0305286 213 QDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQD 289 (559) Q Consensus 213 ~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n 289 (559) +.+++ ..|.++ +|++|+| .|.+.++.+.. +..+++|+.|+++.| .. +...|..+++|+.| +++.| T Consensus 281 ~~i~~-~~f~~~~~L~~L~l-~n~l~~i~~~~-f~~~~~L~~L~L~~N-l~~i~~~~f~~~~~L~~L--------~L~~N 348 (445) T 4cp6_A 281 EKIGT-FAFADAIKLEEISL-PNSLETIERLA-FYGNLELKELILPDN-VKNFGKHVMNGLPKLKSL--------TIGNN 348 (445) T ss_dssp CEECT-TTTTTCCSCCEEEC-CTTCCEECTTS-EESCTTCCEEEECTT-CCEECTTCEECCTTCCEE--------EECTT T ss_pred cEehH-HhhhCCCCCCEEEE-CCcccEEcHhh-hhCCcCCCEEEeCCC-hheehhhHhhCCCCCCEE--------EECCC Confidence 98874 588999 9999999 99999988876 899999999999999 43 45678899999999 77777 Q ss_pred hhhhhcccccCccc-ccccccccc-ccc-eeeeecCCcCccccceeecCCcccc Q FBpp0305286 290 FISSYYTFFDDTEE-RFKLKKYYD-DQA-MFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 290 ~L~~~~~~~d~~~~-l~~L~~L~l-~N~-l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) +..++..... + +++|+.|++ +|. ..+++......+.+..+.+++|.+. T Consensus 349 -l~~i~~~~f~--~cL~~L~~L~L~~N~~~~~ip~~~~~~~~~l~~~~~~n~l~ 399 (445) T 4cp6_A 349 -INSLPSFFLS--GVLDSLKEIHIKNKSTEFSVKKDTFAIPETVKFYVTSEHIK 399 (445) T ss_dssp -CCEECTTCEE--SCCTTCCEEEECCCCTTCEECTTSBCCCTTCEEEESCHHHH T ss_pred -ccEeChhhhh--ChhhhccEEEecCCceEEecchhheechHHHHHHHcccchh Confidence 6666653332 5 599999999 666 5555443334445555566666543No 217>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Probab=99.17 E-value=4.1e-11 Score=111.73 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=100.5 Q ss_pred cCCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCcc Q FBpp0305286 139 DLSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGEL 218 (559) Q Consensus 139 dLs~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l 218 (559) .+..+.+++.|.+.+|.+..+ + ..+..+++|++|+|++|.|+.++. +..+++|+.|+|++|+|+.++. T Consensus 14 ~~~~~~~L~~L~l~~n~l~~l---~----~~~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~i~~~~~- 81 (176) T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI---E----NLGATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTLLVNNNRICRIGE- 81 (176) T ss_dssp EEECTTSCEEEECTTSCCCSC---C----CGGGGTTCCSEEECCSSCCCEECC----CCCCSSCCEEECCSSCCCEECS- T ss_pred hccCcCCceEEEccCCCcCCc---c----hhhccCCcCCEEECCCCccccccC----ccccCCCCEEECCCCeeecCch- Confidence 345677888888888877633 2 233578999999999999999864 3889999999999999999864 Q ss_pred CccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCch-----hccCCCCcccc Q FBpp0305286 219 NYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTE-----AVDNIPKSQQL 276 (559) Q Consensus 219 ~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~-----~~~~lp~Lk~L 276 (559) ..+..+ +|++|+|++|.+++...-..+..+++|+.|++++|...... .+..+++|+.| T Consensus 82 ~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L 145 (176) T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145 (176) T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE T ss_pred hhhccCCCCCEEEccCCCcCchHHHHHHhcCCCCCEEeccCCcCcCchhHHHHHHHHcchhhcc Confidence 244477 99999999999998765223899999999999999764321 34678999999No 218>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Probab=99.16 E-value=1.1e-10 Score=125.76 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=47.9 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) ..+++|++|++++|+++.++.. .++|+.|++++|+++.++ .+.++ +|++|++++|.+.+.+. ..+ T Consensus 150 ~~l~~L~~L~l~~n~l~~l~~~------~~~L~~L~l~~n~l~~l~---~~~~l~~L~~L~l~~n~l~~l~~-----~~~ 215 (454) T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPD-----LPL 215 (454) T ss_dssp TTCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCC-----CCT T ss_pred CCCCCCCEEECCCCCCcccccC------CCCCCEEECcCCcCCcCc---cccCCCcCCEEECcCCccccCCC-----CCc Confidence 4555666666666655554432 245566666666555554 24555 55566666555554331 124 Q ss_pred CccEEeCCCCcCCCchhccCCCCcccc Q FBpp0305286 250 QLKNVHGCVQLGESTEAVDNIPKSQQL 276 (559) Q Consensus 250 ~L~~Ldl~~N~~~~~~~~~~lp~Lk~L 276 (559) +|+.|++++|.....+.+..+++|+.| T Consensus 216 ~L~~L~l~~n~l~~l~~l~~l~~L~~L 242 (454) T 1jl5_A 216 SLESIVAGNNILEELPELQNLPFLTTI 242 (454) T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEE T ss_pred cCCEEECCCCcccccccccCCCCCCEE Confidence 555555555543333234455555555No 219>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Probab=99.15 E-value=2.7e-11 Score=124.22 Aligned_cols=153 Identities=10% Similarity=0.062 Sum_probs=95.8 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCc---------CCCc---- Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNG---------LAKL---- 239 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~---------l~~~---- 239 (559) +++|++|+| +|+++.++.. .|.++++|+.|+|++|.++.++. ..|.. +|+.|++.+|. +... T Consensus 100 ~~~L~~l~l-~n~l~~i~~~--~F~~~~~L~~l~l~~n~l~~i~~-~~f~~-~L~~l~l~~n~~~~f~~~~~L~~l~~~~ 174 (329) T 3sb4_A 100 KQTLEKVIL-SEKIKNIEDA--AFKGCDNLKICQIRKKTAPNLLP-EALAD-SVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329) T ss_dssp CTTCCC-CB-CTTCCEECTT--TTTTCTTCCEEEBCCSSCCEECT-TSSCT-TTCEEEECTTCTHHHHTSTTTTTSCEEE T ss_pred CCCceEEEe-cCCcEEehhh--hhhCCCCCcEEEeCcchhhhhhh-Hhhhc-cceEEEecCcchhhhhcccccceeeecC Confidence 777888888 7777777654 34677888888888888777764 24443 67777766663 0000 Q ss_pred ---------------------------------------c---hhHHhccCCCccEEeCCCCcCC--CchhccCCCCccc Q FBpp0305286 240 ---------------------------------------S---VDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQQ 275 (559) Q Consensus 240 ---------------------------------------~---~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk~ 275 (559) . ...++..+++|+.|+++.|.+. +...|..+++|+. T Consensus 175 ~~~l~~~i~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~i~~i~~~~f~~~~~L~~ 254 (329) T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329) T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE T ss_pred CeeeEEEEeeccchhhhhhhhhcccCcccceeEEecceechHHHHHHHHhcccCcEEEcCCCcccEeCHhhhcCCccCcE Confidence 0 0011236778888888876543 3446777778888 Q ss_pred ccCCCCCCccchhhhhhhhcccccCcccccccc-ccccccceeeeecC-CcCccccceeecCCccccC Q FBpp0305286 276 LQGGGTNGLKFCQDFISSYYTFFDDTEERFKLK-KYYDDQAMFSLSVP-VQLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 276 L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~-~L~l~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~ 341 (559) + ++. |.++.++..... ++++|+ .+++.+.+..+... +..++.|+.+++++|.++. T Consensus 255 l--------~l~-n~l~~i~~~~f~--~~~~L~~~l~l~~~l~~i~~~~f~~~~~L~~l~l~~n~l~~ 311 (329) T 3sb4_A 255 I--------KLP-HNLKTIGQRVFS--NCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329) T ss_dssp E--------ECC-TTCCEECTTTTT--TCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCE T ss_pred E--------EcC-CCccEecHhhhh--CchhcceEEEecccceEEchhhhhCCCCCCEEEecCCcCCE Confidence 8 444 334444432222 577787 88885577776533 4667788888888887763No 220>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} SCOP: c.10.2.0 Probab=99.15 E-value=1.3e-10 Score=110.65 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=86.0 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|+.|+|++|+|+.++.. +..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.++++.+.. +..+++|+ T Consensus 31 ~~L~~L~L~~N~l~~lp~~---l~~l~~L~~L~Ls~N~i~~~~~-~~f~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~ 105 (193) T 2wfh_A 31 RDVTELYLDGNQFTLVPKE---LSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRT-FDGLKSLR 105 (193) T ss_dssp TTCCEEECCSSCCCSCCGG---GGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCC T ss_pred CCCcEEEecCCcCCccchh---hcCCCCCCEEECCCCcCCccCH-hHccCCcCCCEEECCCCccCeeCHHH-hCCCcCCC Confidence 5789999999999988764 5788999999999999998873 478888 9999999999999888766 88899999 Q ss_pred EEeCCCCcCC--CchhccCCCCcccccCCCCCC Q FBpp0305286 253 NVHGCVQLGE--STEAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 253 ~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l 283 (559) .|++++|.+. +...+..+++|+.|++++|.+ T Consensus 106 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 138 (193) T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193) T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE T ss_pred EEECCCCCCCeECHhhhhcCCCCCEEEecCCCc Confidence 9999998654 334577888899996666544No 221>4q3i_A Osserk2 D128N; leucine rich repete, TOLL-like receptor, brassinosteroids, transferase; HET: NAG; 2.35A {Oryza sativa} PDB: 4q3g_A* Probab=99.15 E-value=3.4e-11 Score=119.06 Aligned_cols=136 Identities=15% Similarity=0.030 Sum_probs=94.5 Q ss_pred cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCC Q FBpp0305286 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQ 250 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~ 250 (559) ..++|+.|+|++|+|+.+... .+..+++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.+.+..+.. +..+++ T Consensus 44 ~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~ 119 (244) T 4q3i_A 44 PDNSVIRVDLGNAQLSGALVP--QLGQLKNLQYLELYSNNISGTIP-NELGNLTNLVSLNLYLNNFTGFIPET-LGQLYK 119 (244) T ss_dssp TTSCEEEEECTTSCCEEECCG--GGGGCTTCCEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEECCCGG-GGGCTT T ss_pred CCCCEEEEEcCCCccCCCCch--HHccCCCCCEEECCCCcCCCCCC-hHHhCCCCCCEEECcCCcCCCcChhH-HhhCcC Confidence 347899999999999865432 25788999999999999884432 367888 8999999999988766655 788888 Q ss_pred ccEEeCCCCcCC--CchhccCCCCcccccCCCCCCccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccc Q FBpp0305286 251 LKNVHGCVQLGE--STEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYV 328 (559) Q Consensus 251 L~~Ldl~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~ 328 (559) |+.|++++|.+. .+..+..+++|+.| ++++|.++.++... +..++. T Consensus 120 L~~L~L~~N~l~~~~~~~~~~l~~L~~L--------~L~~N~l~~l~~~~------------------------~~~l~~ 167 (244) T 4q3i_A 120 LRFLRLNNNSLSGSIPKSLTNITTLQEL--------ALDTNQLKSVPDGI------------------------FDRLTS 167 (244) T ss_dssp CCEEECCSSEEBSCCCGGGGGCTTCCEE--------ECCSSBCCCCCTTS------------------------STTCTT T ss_pred CCEEECcCCcccCcChhHhhcCcCCCEE--------ECCCCcCCcCCHHH------------------------HccCCC Confidence 888888888543 33445566666666 44444333322210 123456 Q ss_pred cceeecCCccccCCC Q FBpp0305286 329 YGYKLYNRNQKRQHS 343 (559) Q Consensus 329 L~~L~ls~N~i~~~~ 343 (559) |++|++++|++.|.+ T Consensus 168 L~~L~L~~N~~~c~c 182 (244) T 4q3i_A 168 LQKIWLHTNPWDCSC 182 (244) T ss_dssp CCEEECCSSCBCCCT T ss_pred CCEEEecCCCccCcC Confidence 777888888887765No 222>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} SCOP: c.10.2.0 Probab=99.15 E-value=2.1e-10 Score=107.12 Aligned_cols=108 Identities=26% Similarity=0.210 Sum_probs=82.0 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) .++|++|+|++|+|+.++.. .+..+++|+.|+|++|+|+.++. ..|..+ +|++|+|++|.+++..+.. +..+++| T Consensus 27 ~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 102 (177) T 2o6r_A 27 PSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGV-FDKLTQL 102 (177) T ss_dssp CTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTC T ss_pred CCCCcEEEcCCCccCcCCHH--HhcCcccccEEeCCCCcccCcCh-hhhcCCCcccEEECCCCccCccCHHH-hcCCCCC Confidence 36788888888888887653 34778888888888888888773 457777 8888888888888877665 7788888 Q ss_pred cEEeCCCCcCCC--chhccCCCCcccccCCCCCCc Q FBpp0305286 252 KNVHGCVQLGES--TEAVDNIPKSQQLQGGGTNGL 284 (559) Q Consensus 252 ~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~ 284 (559) +.|++++|.+.. ...+..+++|+.|++++|.+. T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177) T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177) T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC T ss_pred CEEECCCCcceEcCHHHhhcCccCCEEEccCCCcc Confidence 888888886543 334677888888855555443No 223>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Probab=99.15 E-value=3e-11 Score=137.83 Aligned_cols=177 Identities=12% Similarity=0.045 Sum_probs=84.0 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCc--CccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLK--AFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~--~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) ...++.|.+.+|.+..+ ...+..+++|+.|+|++|.+.... .....+..+++|+.|+|++|.|+.++. . T Consensus 172 ~~~l~~L~l~~n~~~~l-------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~--~ 242 (727) T 4b8c_D 172 TPLTPKIELFANGKDEA-------NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA--N 242 (727) T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCG--G T ss_pred CCCccEEEeeCCCcccc-------hHHHhcCCCCCEEECcCCccccccceecccccccCCcceEEECCCCCcCccCH--h Confidence 34566777766665531 123356788888888877553311 111124677888888888888887764 3 Q ss_pred cCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc-hhccCCCCcccccCCCCCCccchhhhhhhhcccc Q FBpp0305286 221 INKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST-EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFF 298 (559) Q Consensus 221 l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~-~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~ 298 (559) +..+ +|++|+|++|.|+.++. . +..+++|+.|+++.|.+... ..+..+++|+.| +|++|.|..++..+ T Consensus 243 ~~~l~~L~~L~l~~n~l~~l~~-~-~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L--------~l~~n~l~~l~~~~ 312 (727) T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPA-E-IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF--------YFFDNMVTTLPWEF 312 (727) T ss_dssp GGGCCSCSCCBCTTSCCSCCCG-G-GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE--------ECCSSCCCCCCSST T ss_pred hcCCCCCCEEEeCCCcCcchhH-H-hhcCCCCCEEECcCCcCcchhhhhccCCCcCEE--------ECCCCcCCCcCHhH Confidence 4466 78888888888876543 3 67788888888888765432 346677788888 44445554544443 Q ss_pred cCcccccccccccc-ccceeeeecC-C-cCccccceeecCCccccC Q FBpp0305286 299 DDTEERFKLKKYYD-DQAMFSLSVP-V-QLNYVYGYKLYNRNQKRQ 341 (559) Q Consensus 299 d~~~~l~~L~~L~l-~N~l~sl~~~-~-~~~~~L~~L~ls~N~i~~ 341 (559) . .+++|+.|++ .|.+...... . .....+..|++++|.+.. T Consensus 313 ~---~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~l~l~~N~~~~ 355 (727) T 4b8c_D 313 G---NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727) T ss_dssp T---SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC T ss_pred c---CCcceeEEECcCCcCCCcchHHhhhccccchhhhhccccccc Confidence 3 5778888888 5555442111 1 112345567788888765No 224>4puf_A E3 ubiquitin-protein ligase SLRP; LRR domain, NEL domain, E3 ubiquitin ligase, human thioredox ligase -oxidoreductase complex, ligase-oxidoreductase compl; 3.30A {Salmonella enterica subsp} Probab=99.15 E-value=7.1e-11 Score=132.95 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=79.0 Q ss_pred CCCccccccccCchhHHhHHHHHhcccccccccccCC----------CCCCCccccccccCCcchhhhHHHHHHhhccCC Q FBpp0305286 105 GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLS----------RFHASPELSLHFCPLHMVKLLETVLVLSNHLFP 174 (559) Q Consensus 105 ~~p~~~~~l~l~~~~i~~L~~~l~~~y~~~~~~LdLs----------~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~ 174 (559) .+|+..+.+.++.+.+..++..+. ...+.|+++ -+.+|+.|.+.+|.+..+ +. ...+ T Consensus 68 ~l~~~L~~L~Ls~n~l~~lp~~~~----~~L~~L~Ls~n~l~~i~~~~~~~L~~L~Ls~N~l~~l---p~------~~~~ 134 (637) T 4puf_A 68 YIPEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITEL---PE------RLPS 134 (637) T ss_dssp BCCTTCCEEEEESSCCSSCCSCCB----SCCSEEEEESSCCCCCCSCCCTTCCEEECCSCCCCCC---CS------CCCT T ss_pred cccCCCcEEEeeCCcCCccChhHc----CCCCEEEeeCCCCCCCChhhcCCCCEEEeeCCcCCcc---Ch------hhhc Confidence 355556667777766654433111 233333332 124556666666555422 11 1125 Q ss_pred CccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCcchhHHhccCCCccEE Q FBpp0305286 175 HVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNV 254 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~L 254 (559) +|++|+|++|+|+.++.. + .++|+.|+|++|.|+.++. .+. .+|++|+|++|.+..++.. .+++|+.| T Consensus 135 ~L~~L~Ls~N~l~~lp~~--~---~~~L~~L~Ls~n~l~~l~~--~~~-~~L~~L~Ls~N~l~~l~~~----~~~~L~~L 202 (637) T 4puf_A 135 ALQSLDLFHNKISCLPEN--L---PEELRYLSVYDNSIRTLPA--HLP-SEITHLNVQSNSLTALPET----LPPGLKTL 202 (637) T ss_dssp TCCEEECCSCCCCCCCSC--C---CTTCCEEECTTCBCSCCCS--CCC-SCCSEEECCSBCCCCCCSC----CCTTCCEE T ss_pred cceEEEecCCccccCChh--h---cCCCCEEECCCCcccccCc--ccc-CCcCEEEecCCccccCchh----hhccCcEE Confidence 677777777777666543 1 1667777777777666653 111 3666677777766655432 12666666 Q ss_pred eCCCCcCCCchhccCCCCcccccCCCC Q FBpp0305286 255 HGCVQLGESTEAVDNIPKSQQLQGGGT 281 (559) Q Consensus 255 dl~~N~~~~~~~~~~lp~Lk~L~l~~~ 281 (559) ++++|.+...+. ..+++|+.|++++| T Consensus 203 ~Ls~N~l~~l~~-~~l~~L~~L~Ls~N 228 (637) T 4puf_A 203 EAGENALTSLPA-SLPPELQVLDVSKN 228 (637) T ss_dssp ECTTCCCCCCCS-CCCTTCCEEECCSS T ss_pred ECCCCCCCCCCh-hhcCCCCEEECcCC Confidence 666665433221 23456666644333No 225>4ow2_A YOP effector YOPM; leucine-rich repeat, LRR, toxin; 3.20A {Yersinia enterocolitica} Probab=99.14 E-value=8e-11 Score=126.76 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=16.0 Q ss_pred EEEcCCCCccccccccCchhHHhH Q FBpp0305286 100 VRVTPGLPKSMMCAQITDEFTTAI 123 (559) Q Consensus 100 l~v~p~~p~~~~~l~l~~~~i~~L 123 (559) +...|..++..+.++++.+.+..+ T Consensus 50 l~~lp~~~~~L~~L~ls~n~l~~l 73 (448) T 4ow2_A 50 LSSLPELPPHLERLVASCNSLTEL 73 (448) T ss_dssp CSCCCCCCSSCSEEECCSSCCSSC T ss_pred CCcccccCCcccEEECCCCCCCcC Confidence 334556667777788888777554No 226>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Probab=99.12 E-value=4.6e-11 Score=131.98 Aligned_cols=93 Identities=22% Similarity=0.299 Sum_probs=58.5 Q ss_pred CccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccE Q FBpp0305286 175 HVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKN 253 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~ 253 (559) +|+.|+|++|+|+.++.+ ..+++|+.|+|++|.|+.++. .+.++ +|++|+|++|.+++++ . +..+++|+. T Consensus 442 ~L~~L~l~~n~l~~l~~~----~~l~~L~~L~l~~n~l~~l~~--~~~~l~~L~~L~l~~n~l~~l~--~-~~~l~~L~~ 512 (567) T 1dce_A 442 DVRVLHLAHKDLTVLCHL----EQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALENVD--G-VANLPRLQE 512 (567) T ss_dssp TCSEEECTTSCCSSCCCG----GGGTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCE T ss_pred CccEEECCCCCCCCCCcc----ccCCCCCEEECCCCCCcccch--HhhcCCCCCEEECCCCCCCCCc--c-cccCCCCCE Confidence 666677777666666532 556666777777776666654 55666 6677777777666654 2 666666777 Q ss_pred EeCCCCcCCCc---hhccCCCCcccc Q FBpp0305286 254 VHGCVQLGEST---EAVDNIPKSQQL 276 (559) Q Consensus 254 Ldl~~N~~~~~---~~~~~lp~Lk~L 276 (559) |++++|.+... ..+..+++|+.| T Consensus 513 L~l~~n~l~~~~~~~~~~~l~~L~~L 538 (567) T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567) T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEE T ss_pred EECCCCCCCCCcChhhhhcCCCCCEE Confidence 77666644322 345566666666No 227>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Probab=99.12 E-value=2.6e-10 Score=108.33 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=106.1 Q ss_pred CCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC--chhccCCCCcccccC Q FBpp0305286 201 SLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES--TEAVDNIPKSQQLQG 278 (559) Q Consensus 201 ~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~--~~~~~~lp~Lk~L~l 278 (559) ..+.|++++|+|+.+|. .+ ...+++|+|++|.+..+....++..+++|+.|++++|.+.. +..+..+++|+.| T Consensus 9 ~~~~l~~s~n~l~~ip~--~~-~~~l~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-- 83 (192) T 1w8a_A 9 EGTTVDCTGRGLKEIPR--DI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL-- 83 (192) T ss_dssp ETTEEECTTSCCSSCCS--CC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE-- T ss_pred CCCEEECCCCCCCcCCC--CC-CCCCcEEECCCCccCccCCchhhccCCCCCEEECCCCcCCccCHHHccCcccCCEE-- Confidence 34699999999999985 22 12899999999999998775448899999999999997653 4678899999999 Q ss_pred CCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCccccCCChhhhhh Q FBpp0305286 279 GGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKRQHSSFAQNA 349 (559) Q Consensus 279 ~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~~~~~~~rl~ 349 (559) ++++|.++.+...... ++++|+.|++ +|.+..+... +..++.|++|++++|++.+......+. T Consensus 84 ------~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~~~~~~ 148 (192) T 1w8a_A 84 ------QLGENKIKEISNKMFL--GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148 (192) T ss_dssp ------ECCSCCCCEECSSSST--TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH T ss_pred ------ECCCCcCCeeCHHHhC--CCccCCEEECCCCcCCeECHhHhccCCCCCEEEccCCCccCcCCcHHHH Confidence 5555666555442222 6899999999 8888766443 467889999999999999876655443No 228>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Probab=99.11 E-value=2.9e-11 Score=127.30 Aligned_cols=173 Identities=6% Similarity=0.059 Sum_probs=95.2 Q ss_pred CCCCCCccccccccC---CcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCc Q FBpp0305286 141 SRFHASPELSLHFCP---LHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGE 217 (559) Q Consensus 141 s~l~~L~~L~l~~~~---l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~ 217 (559) .++++|+.|.+.++. +..+ ....+.++++|+.|+|+ |+++.++.. .|.++++|+.|+|++| ++.++. T Consensus 84 ~~~~~L~~L~l~~n~~~~l~~i------~~~~f~~~~~L~~L~l~-n~l~~i~~~--~f~~~~~L~~L~l~~n-l~~i~~ 153 (394) T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKI------GRQAFMFCSELTDIPIL-DSVTEIDSE--AFHHCEELDTVTIPEG-VTSVAD 153 (394) T ss_dssp TTCTTCCEEEEGGGCCCCCCEE------CTTTTTTCTTCCBCGGG-TTCSEECTT--TTTTCTTCCEEECCTT-CCEECT T ss_pred hCCcCCcEEEeCCCCccccEEE------chhhhhCCCCCCeEEeC-CCCCEechh--hhhCCCCCceEECCcc-eeEcch Confidence 345556666665554 4321 12234566677777777 666666543 3466677777777777 666653 Q ss_pred cCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCc-CCCchhccCCCCcccccCCCCCCccchhhhhhhhc Q FBpp0305286 218 LNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQL-GESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYY 295 (559) Q Consensus 218 l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~-~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~ 295 (559) ..|.++ +|++|+|++| +..+.... +.. ++|+.|++..+. ..+...+..+++|+.|.+++ |.+..++ T Consensus 154 -~~f~~~~~L~~L~l~~n-l~~i~~~~-f~~-~~L~~L~l~~~l~~i~~~~f~~~~~L~~L~l~~--------n~l~~i~ 221 (394) T 4gt6_A 154 -GMFSYCYSLHTVTLPDS-VTAIEERA-FTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDS--------ESYPAID 221 (394) T ss_dssp -TTTTTCTTCCEEECCTT-CCEECTTT-TTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECC--------SSSCBSS T ss_pred -hhhhhcccceeeecCCC-ceEEchhh-ccc-CCccEEEeCCceeEEccccccCCccceEEEcCC--------ccceeeC Confidence 356666 7777777776 65555544 444 677777776621 12344566677777773333 3333332 Q ss_pred ccccCccc----ccccc---------ccccccceeeeecC-CcCccccceeecCCc Q FBpp0305286 296 TFFDDTEE----RFKLK---------KYYDDQAMFSLSVP-VQLNYVYGYKLYNRN 337 (559) Q Consensus 296 ~~~d~~~~----l~~L~---------~L~l~N~l~sl~~~-~~~~~~L~~L~ls~N 337 (559) ..... . +.+|+ .+++.+++..+... +..++.|+.++++++ T Consensus 222 ~~~~~--~~~~~~~~L~~~~~~~~~~~l~l~~~~~~i~~~~f~~~~~L~~l~l~~~ 275 (394) T 4gt6_A 222 NVLYE--KSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS 275 (394) T ss_dssp SCEEE--ECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT T ss_pred CeEee--cCCCCceeEEEccCCCccceEEECCCceEEchhhCcCCCCceeEECchH Confidence 21111 2 44555 55555555554332 244566666666653No 229>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} SCOP: c.10.2.0 Probab=99.11 E-value=3.3e-10 Score=105.80 Aligned_cols=131 Identities=17% Similarity=0.099 Sum_probs=95.2 Q ss_pred CccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccE Q FBpp0305286 175 HVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKN 253 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~ 253 (559) ..+.++++++.++.++.. ..++|+.|+|++|+|+.++. ..+.++ +|++|+|++|.+.+..+.. +..+++|+. T Consensus 8 ~~~~l~c~~~~l~~ip~~-----~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 80 (177) T 2o6r_A 8 SGTEIRCNSKGLTSVPTG-----IPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQIQSLPDGV-FDKLTKLTI 80 (177) T ss_dssp ETTEEECCSSCCSSCCTT-----CCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTT-TTTCTTCCE T ss_pred cCCEeEeCCCCcCccCcC-----CCCCCcEEEcCCCccCcCCH-HHhcCcccccEEeCCCCcccCcChhh-hcCCCcccE Confidence 357899999999998753 34899999999999998874 467888 9999999999999887765 788999999 Q ss_pred EeCCCCcCCC--chhccCCCCcccccCCCCCCccchhhhhhhhcccccCccccccccccccccceeeeecCCcCccccce Q FBpp0305286 254 VHGCVQLGES--TEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGY 331 (559) Q Consensus 254 Ldl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~ 331 (559) |++++|.+.. ...+..+++|+.| ++++|.++.++... +..++.|++ T Consensus 81 L~Ls~N~l~~~~~~~~~~l~~L~~L--------~L~~N~l~~~~~~~------------------------~~~l~~L~~ 128 (177) T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKEL--------ALDTNQLKSVPDGI------------------------FDRLTSLQK 128 (177) T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEE--------ECCSSCCSCCCTTT------------------------TTTCTTCCE T ss_pred EECCCCccCccCHHHhcCCCCCCEE--------ECCCCcceEcCHHH------------------------hhcCccCCE Confidence 9999986543 2335566677777 44444443322211 133456777 Q ss_pred eecCCccccCCCh Q FBpp0305286 332 KLYNRNQKRQHSS 344 (559) Q Consensus 332 L~ls~N~i~~~~~ 344 (559) |++++|.+.+... T Consensus 129 L~l~~N~~~~~~~ 141 (177) T 2o6r_A 129 IWLHTNPWDCSCP 141 (177) T ss_dssp EECCSSCBCCCHH T ss_pred EEccCCCccccCC Confidence 8888888876543No 230>4q3i_A Osserk2 D128N; leucine rich repete, TOLL-like receptor, brassinosteroids, transferase; HET: NAG; 2.35A {Oryza sativa} PDB: 4q3g_A* Probab=99.09 E-value=1.1e-10 Score=115.28 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=77.7 Q ss_pred CCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCC--CchhccCCCCcc Q FBpp0305286 198 SFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGE--STEAVDNIPKSQ 274 (559) Q Consensus 198 ~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~--~~~~~~~lp~Lk 274 (559) ..++|+.|+|++|.|+.+.. ..|.++ +|++|+|++|.+.+..+.. +..+++|+.|++++|.+. .+..+..+++|+ T Consensus 44 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 121 (244) T 4q3i_A 44 PDNSVIRVDLGNAQLSGALV-PQLGQLKNLQYLELYSNNISGTIPNE-LGNLTNLVSLNLYLNNFTGFIPETLGQLYKLR 121 (244) T ss_dssp TTSCEEEEECTTSCCEEECC-GGGGGCTTCCEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEECCCGGGGGCTTCC T ss_pred CCCCEEEEEcCCCccCCCCc-hHHccCCCCCEEECCCCcCCCCCChH-HhCCCCCCEEECcCCcCCCcChhHHhhCcCCC Confidence 45789999999999986542 368888 9999999999998776665 889999999999998653 445677888888 Q ss_pred cccCCCCCCccchhhhhhhh-cccccCcccccccccccc-cccee Q FBpp0305286 275 QLQGGGTNGLKFCQDFISSY-YTFFDDTEERFKLKKYYD-DQAMF 317 (559) Q Consensus 275 ~L~l~~~~l~~L~~n~L~~~-~~~~d~~~~l~~L~~L~l-~N~l~ 317 (559) .| ++++|.+... +..+. .+++|+.|++ .|.+. T Consensus 122 ~L--------~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~ 155 (244) T 4q3i_A 122 FL--------RLNNNSLSGSIPKSLT---NITTLQELALDTNQLK 155 (244) T ss_dssp EE--------ECCSSEEBSCCCGGGG---GCTTCCEEECCSSBCC T ss_pred EE--------ECcCCcccCcChhHhh---cCcCCCEEECCCCcCC Confidence 88 5555555432 22332 4666666666 45444No 231>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I 4peq_B 3tsr_E Probab=99.08 E-value=2.5e-11 Score=130.07 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=58.5 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCc--CccccccCCCCCCEEeCCCCCCCCCCc--c- Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLK--AFAGNSQSFASLERLDISANRIQDLGE--L- 218 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~--~~~~l~~~l~~L~~L~Ls~N~L~~l~~--l- 218 (559) ++|+.|.+.+|.+... ........+....++|++|+|++|.++... .....+..+++|+.|+|++|+++.... + T Consensus 170 ~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 248 (461) T 1z7x_W 170 PDFKELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC 248 (461) T ss_dssp TTCCEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH T ss_pred CCccEEECCCCCCCHH-HHHHHHHHHHhCCCCceEEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCchhHHHHHH Confidence 4566666666655421 111122222234556777777777766521 111123456667777777766653210 0 Q ss_pred -CccCCC-CccEEEeecCcCCCcc----hhHHhccCCCccEEeCCCCcC Q FBpp0305286 219 -NYINKL-SCKTIFLAGNGLAKLS----VDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 219 -~~l~~l-~L~~L~L~~N~l~~~~----~~~il~~lp~L~~Ldl~~N~~ 261 (559) ..+..+ +|++|+|++|.+++.. +.. +..+++|++|++++|.+ T Consensus 249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i 296 (461) T 1z7x_W 249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNEL 296 (461) T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCC T ss_pred HHHhcccCCccEEECcCCCCCHHHHHHHHHH-HhcCCCcCEEEccCCCC Confidence 012344 6666666666665431 122 45566666666666643No 232>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Probab=99.07 E-value=1.1e-10 Score=122.10 Aligned_cols=164 Identities=12% Similarity=0.018 Sum_probs=78.7 Q ss_pred ccCCCccEEEccCCcCCCCc--CccccccCCCCCCEEeCCCCCCCCCCcc---CccC---------CC-CccEEEeecCc Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLK--AFAGNSQSFASLERLDISANRIQDLGEL---NYIN---------KL-SCKTIFLAGNG 235 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~--~~~~l~~~l~~L~~L~Ls~N~L~~l~~l---~~l~---------~l-~L~~L~L~~N~ 235 (559) ..+++|++|+|++|.++... .+...+..+++|+.|+|++|.++..+.. ..+. ++ +|++|+|++|. T Consensus 91 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~L~l~~n~ 170 (386) T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386) T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC T ss_pred hcCCCccEEECCCCCCChHHHHHHHHHHhcCCCCcEEECcCCCCChHHHHHHHHHHHHHhhhhcccCCCCCcEEECCCCC Confidence 55667777777777665411 0111134566677777777666533210 0011 12 66666666666 Q ss_pred CCCcchhH---HhccCCCccEEeCCCCcCCCc-------hhccCCCCcccccCCCCCCccchhhhhhhhcccccCccccc Q FBpp0305286 236 LAKLSVDV---IRKMLPQLKNVHGCVQLGEST-------EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERF 305 (559) Q Consensus 236 l~~~~~~~---il~~lp~L~~Ldl~~N~~~~~-------~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~ 305 (559) +....... .+..+++|+.|++++|.+... ..+..+++|+.|.+++|.+...... .++..+. .++ T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~l~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~---~~~ 244 (386) T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS---ALAIALK---SWP 244 (386) T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH---HHHHHGG---GCT T ss_pred CCcHHHHHHHHHHhhCCCccEEEccCCCCCHHHHHHHHHHHHHhCCCCCEEECCCCCCCHHHHH---HHHHHHh---cCC Confidence 65322211 245566666666666644311 2345566666664443322211110 1222221 355 Q ss_pred ccccccc-ccceeee-----ecCCcC--ccccceeecCCcccc Q FBpp0305286 306 KLKKYYD-DQAMFSL-----SVPVQL--NYVYGYKLYNRNQKR 340 (559) Q Consensus 306 ~L~~L~l-~N~l~sl-----~~~~~~--~~~L~~L~ls~N~i~ 340 (559) +|+.|++ .|.+... ...... ++.|++|++++|.+. T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~l~~n~i~ 287 (386) T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386) T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB T ss_pred cccEEECCCCCCCchHHHHHHHHHhhCCCCCceEEeCcCCCCC Confidence 6666666 4444331 111112 256666666666654No 233>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Probab=99.07 E-value=8.5e-11 Score=123.69 Aligned_cols=151 Identities=6% Similarity=-0.090 Sum_probs=90.3 Q ss_pred hhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeec-------------- Q FBpp0305286 169 SNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAG-------------- 233 (559) Q Consensus 169 i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~-------------- 233 (559) .+.+|++|+.|+++ |+++.++.. .+..+++|+.|++++| ++.++. ..|.++ +|++|++.+ T Consensus 157 ~f~~~~~L~~l~l~-~~l~~i~~~--~f~~~~~L~~l~l~~n-l~~i~~-~~f~~~~~L~~l~l~~~~~~i~~~~f~~~~ 231 (394) T 4fs7_A 157 AFATCESLEYVSLP-DSMETLHNG--LFSGCGKLKSIKLPRN-LKIIRD-YCFAECILLENMEFPNSLYYLGDFALSKTG 231 (394) T ss_dssp TTTTCTTCCEEECC-TTCCEECTT--TTTTCTTCCBCCCCTT-CCEECT-TTTTTCTTCCBCCCCTTCCEECTTTTTTCC T ss_pred hhcCCCCCcEEEEC-CcceEehhh--hCcCCCCceEEEeCCc-cceehH-HHhhcCcCCCEEEeCCcccChhhhhcccCC Confidence 34566777777777 566665543 2456666777777666 555542 355555 666666655 Q ss_pred -------CcCCCcchhHHhccCCCccEEeCCCCcC-CCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCccccc Q FBpp0305286 234 -------NGLAKLSVDVIRKMLPQLKNVHGCVQLG-ESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERF 305 (559) Q Consensus 234 -------N~l~~~~~~~il~~lp~L~~Ldl~~N~~-~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~ 305 (559) |.+..+.... +..+++|+.|++.+|.. .....+..+++|+.+ ++++ + .++..... +++ T Consensus 232 L~~l~l~n~l~~i~~~~-f~~~~~L~~L~l~~n~~~~~~~~f~~~~~L~~L--------~l~~--l-~i~~~~f~--~~~ 297 (394) T 4fs7_A 232 VKNIIIPDSFTELGKSV-FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKV--------IYGS--V-IVPEKTFY--GCS 297 (394) T ss_dssp CCEEEECTTCCEECSST-TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEE--------EECS--S-EECTTTTT--TCT T ss_pred ceEEEeCCCceEehhhh-hhCCcCCcEEEeCCcccEEchhhhcCCCCCCEE--------Eecc--E-EECHHHhh--CCC Confidence 5566655554 77778888888887721 234556777777777 4333 2 22222111 467 Q ss_pred cccccccccceeeeecC-CcCccccceeecCCccc Q FBpp0305286 306 KLKKYYDDQAMFSLSVP-VQLNYVYGYKLYNRNQK 339 (559) Q Consensus 306 ~L~~L~l~N~l~sl~~~-~~~~~~L~~L~ls~N~i 339 (559) +|+.|++.|++..+... +..++.|+.++++ |.+ T Consensus 298 ~L~~L~l~n~l~~i~~~~f~~~~~L~~L~l~-n~l 331 (394) T 4fs7_A 298 SLTEVKLLDSVKFIGEEAFESCTSLVSIDLP-YLV 331 (394) T ss_dssp TCCEEEECTTCCEECTTTTTTCTTCCEECCC-TTC T ss_pred CCCEEEcCCcceEEChHhccCCCCceEEEeC-Ccc Confidence 77777776666665443 3456677777777 444No 234>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Probab=99.06 E-value=2.8e-11 Score=126.56 Aligned_cols=195 Identities=14% Similarity=0.027 Sum_probs=130.2 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcC--ccccccCC---------CCCCEEeCCCC Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKA--FAGNSQSF---------ASLERLDISAN 210 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~--~~~l~~~l---------~~L~~L~Ls~N 210 (559) .+++|+.|.+.+|.+.... + ..+...+..+++|++|+|++|.++..+. +...+..+ ++|+.|+|++| T Consensus 92 ~~~~L~~L~Ls~~~l~~~~-~-~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~L~l~~n 169 (386) T 2ca6_A 92 KCPKLHTVRLSDNAFGPTA-Q-EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386) T ss_dssp TCTTCCEEECCSCCCCTTT-H-HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS T ss_pred cCCCccEEECCCCCCChHH-H-HHHHHHHhcCCCCcEEECcCCCCChHHHHHHHHHHHHHhhhhcccCCCCCcEEECCCC Confidence 4567888888888766321 1 1122233678999999999999875433 11112333 89999999999 Q ss_pred CCCC--CCcc-CccCCC-CccEEEeecCcCCCcc-----hhHHhccCCCccEEeCCCCcCCC------chhccCCCCccc Q FBpp0305286 211 RIQD--LGEL-NYINKL-SCKTIFLAGNGLAKLS-----VDVIRKMLPQLKNVHGCVQLGES------TEAVDNIPKSQQ 275 (559) Q Consensus 211 ~L~~--l~~l-~~l~~l-~L~~L~L~~N~l~~~~-----~~~il~~lp~L~~Ldl~~N~~~~------~~~~~~lp~Lk~ 275 (559) +++. ++.+ ..+..+ +|++|+|++|.+.... +.. +..+++|+.|+++.|.+.. ...+..+++|+. T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 248 (386) T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386) T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE T ss_pred CCCcHHHHHHHHHHhhCCCccEEEccCCCCCHHHHHHHHHHH-HHhCCCCCEEECCCCCCCHHHHHHHHHHHhcCCcccE Confidence 9963 3211 135566 8999999999987532 122 6889999999999996642 245678899999 Q ss_pred ccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceee-----eecCC-cCccccceeecCCccccCCC Q FBpp0305286 276 LQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFS-----LSVPV-QLNYVYGYKLYNRNQKRQHS 343 (559) Q Consensus 276 L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~s-----l~~~~-~~~~~L~~L~ls~N~i~~~~ 343 (559) |.+++|.+....... ++..+.. ..+++|+.|++ .|.+.. +.... ..++.|++|++++|.+.... T Consensus 249 L~L~~n~i~~~~~~~---l~~~l~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~~L~~L~l~~n~~~~~~ 319 (386) T 2ca6_A 249 LGLNDCLLSARGAAA---VVDAFSK-LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386) T ss_dssp EECTTCCCCHHHHHH---HHHHHHT-CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS T ss_pred EECCCCCCCchHHHH---HHHHHhh-CCCCCceEEeCcCCCCCHHHHHHHHHHHhccCCceeEEEccCCcccccc Confidence 966665444322111 2332221 02489999999 777655 32223 45789999999999998654No 235>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Probab=99.06 E-value=3.7e-10 Score=120.00 Aligned_cols=100 Identities=15% Similarity=0.153 Sum_probs=57.2 Q ss_pred hhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhcc Q FBpp0305286 169 SNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKM 247 (559) Q Consensus 169 i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~ 247 (559) .|.+|++|+.|+|++|+|+.++... | .+++|+.|+|+ |.++.++. ..|.++ +|++|+|.+| +..+.... +.. T Consensus 175 ~F~~~~~L~~l~L~~n~l~~i~~~~--f-~~~~L~~l~l~-n~l~~i~~-~~F~~~~~L~~L~l~~n-l~~i~~~~-F~~ 247 (401) T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPAST--F-VYAGIEEVLLP-VTLKEIGS-QAFLKTSQLKTIEIPEN-VSTIGQEA-FRE 247 (401) T ss_dssp TTTTCTTCCEEECTTSCCSEECTTT--T-TTCCCSEEECC-TTCCEECT-TTTTTCTTCCCEECCTT-CCEECTTT-TTT T ss_pred HhhCcccCCeEEcCCCcceecchhh--e-ecCCCcEEEeC-CCceEEch-HHhhCCCCCcEEEeCCc-ceEecccc-ccc Confidence 4567778888888888887776542 2 24667777776 66666653 356666 6777777666 55444433 333 Q ss_pred CCCccEEeCCCCc-CCCchhccCCCCcccc Q FBpp0305286 248 LPQLKNVHGCVQL-GESTEAVDNIPKSQQL 276 (559) Q Consensus 248 lp~L~~Ldl~~N~-~~~~~~~~~lp~Lk~L 276 (559) .+|+.|++..+. ......|..+++|+.+ T Consensus 248 -~~L~~l~l~n~l~~i~~~~F~~~~~L~~L 276 (401) T 4fdw_A 248 -SGITTVKLPNGVTNIASRAFYYCPELAEV 276 (401) T ss_dssp -CCCSEEEEETTCCEECTTTTTTCTTCCEE T ss_pred -CCceEEEeCcccCEechhHhhCCCCCCEE Confidence 455555553221 1123344455555555No 236>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Probab=99.06 E-value=1.3e-10 Score=122.20 Aligned_cols=149 Identities=11% Similarity=-0.001 Sum_probs=77.8 Q ss_pred hccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCC---------------------CCCCCCCccCccCCC-Ccc Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISA---------------------NRIQDLGELNYINKL-SCK 227 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~---------------------N~L~~l~~l~~l~~l-~L~ 227 (559) +.++++|+.|++++| +..++.. .+..+++|+.|++++ |.++.++. ..|.++ +|+ T Consensus 181 f~~~~~L~~l~l~~n-l~~i~~~--~f~~~~~L~~l~l~~~~~~i~~~~f~~~~L~~l~l~n~l~~i~~-~~f~~~~~L~ 256 (394) T 4fs7_A 181 FSGCGKLKSIKLPRN-LKIIRDY--CFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGK-SVFYGCTDLE 256 (394) T ss_dssp TTTCTTCCBCCCCTT-CCEECTT--TTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECS-STTTTCSSCC T ss_pred CcCCCCceEEEeCCc-cceehHH--HhhcCcCCCEEEeCCcccChhhhhcccCCceEEEeCCCceEehh-hhhhCCcCCc Confidence 355666666666665 5554433 235555666666655 55665553 356666 777 Q ss_pred EEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCccccccc Q FBpp0305286 228 TIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKL 307 (559) Q Consensus 228 ~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L 307 (559) +|++++| +....+.. +..+++|+.|++++. ..+...+..+++|+.+ ++. |.+..++..... ++++| T Consensus 257 ~L~l~~n-~~~~~~~~-f~~~~~L~~L~l~~l-~i~~~~f~~~~~L~~L--------~l~-n~l~~i~~~~f~--~~~~L 322 (394) T 4fs7_A 257 SISIQNN-KLRIGGSL-FYNCSGLKKVIYGSV-IVPEKTFYGCSSLTEV--------KLL-DSVKFIGEEAFE--SCTSL 322 (394) T ss_dssp EEEECCT-TCEECSCT-TTTCTTCCEEEECSS-EECTTTTTTCTTCCEE--------EEC-TTCCEECTTTTT--TCTTC T ss_pred EEEeCCc-ccEEchhh-hcCCCCCCEEEeccE-EECHHHhhCCCCCCEE--------EcC-CcceEEChHhcc--CCCCc Confidence 7777777 55555444 666666666666652 2233445555666666 333 223333221111 34555 Q ss_pred cccccccceeeeecC-CcCccccceeecCC Q FBpp0305286 308 KKYYDDQAMFSLSVP-VQLNYVYGYKLYNR 336 (559) Q Consensus 308 ~~L~l~N~l~sl~~~-~~~~~~L~~L~ls~ 336 (559) +.+++.|++..+... +..++.|+.|++++ T Consensus 323 ~~L~l~n~l~~i~~~~f~~~~~L~~L~l~~ 352 (394) T 4fs7_A 323 VSIDLPYLVEEIGKRSFRGCTSLSNINFPL 352 (394) T ss_dssp CEECCCTTCCEECTTTTTTCTTCCEECCCT T ss_pred eEEEeCCcccEEhhhhhhCCCCCCEEEECC Confidence 555555444444322 23345555555555No 237>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I 4peq_B 3tsr_E Probab=99.05 E-value=4.6e-11 Score=127.94 Aligned_cols=160 Identities=12% Similarity=0.082 Sum_probs=70.6 Q ss_pred CccEEEccCCcCCCC--cCccccccCCCCCCEEeCCCCCCCCCCc--c-Cc-cCCC-CccEEEeecCcCCCcchh---HH Q FBpp0305286 175 HVTSLVLSNNYLCSL--KAFAGNSQSFASLERLDISANRIQDLGE--L-NY-INKL-SCKTIFLAGNGLAKLSVD---VI 244 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l--~~~~~l~~~l~~L~~L~Ls~N~L~~l~~--l-~~-l~~l-~L~~L~L~~N~l~~~~~~---~i 244 (559) +|++|+|++|+|+.. ......+..+++|+.|+|++|.++.... + .. ...+ +|++|+|++|.+.+.... .. T Consensus 86 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461) T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461) T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH T ss_pred ceeEEEeeCCCCCHHHHHHHHHHHhcCCCccEEECCCCcCCcHHHHHHHHHHhcCCCceEEEEecCCCCCHHHHHHHHHH Confidence 556666666555521 0111123455556666666655543110 0 01 1223 556666666655554221 11 Q ss_pred hccCCCccEEeCCCCcCCCc--hh-----ccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccce Q FBpp0305286 245 RKMLPQLKNVHGCVQLGEST--EA-----VDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAM 316 (559) Q Consensus 245 l~~lp~L~~Ldl~~N~~~~~--~~-----~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l 316 (559) +..+++|++|++++|.+... .. ....++|+.|+++++.+...... .++..+. .+++|+.|++ .|.+ T Consensus 166 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~---~~~~L~~L~Ls~n~l 239 (461) T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---DLCGIVA---SKASLRELALGSNKL 239 (461) T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH---HHHHHHH---HCTTCCEEECCSSBC T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCCceEEECCCCCCCHHHHH---HHHHHHH---hCCCCCEEeccCCCC Confidence 44555666666665543211 11 11234566663333332221110 1122221 3566667777 4544 Q ss_pred eeeecC------CcCccccceeecCCcccc Q FBpp0305286 317 FSLSVP------VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 317 ~sl~~~------~~~~~~L~~L~ls~N~i~ 340 (559) ...... ...++.|++|++++|.+. T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~ 269 (461) T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGIT 269 (461) T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCC T ss_pred chhHHHHHHHHHhcccCCccEEECcCCCCC Confidence 322111 124466777777777665No 238>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Probab=99.05 E-value=9.6e-11 Score=123.32 Aligned_cols=107 Identities=7% Similarity=0.048 Sum_probs=66.4 Q ss_pred CCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc Q FBpp0305286 141 SRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY 220 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~ 220 (559) ..+.+|+.|.+. +.+..+ ....+.++++|+.|+|++| ++.++.. .|..+++|+.|+|++| ++.++. .. T Consensus 111 ~~~~~L~~L~l~-n~l~~i------~~~~f~~~~~L~~L~l~~n-l~~i~~~--~f~~~~~L~~L~l~~n-l~~i~~-~~ 178 (394) T 4gt6_A 111 MFCSELTDIPIL-DSVTEI------DSEAFHHCEELDTVTIPEG-VTSVADG--MFSYCYSLHTVTLPDS-VTAIEE-RA 178 (394) T ss_dssp TTCTTCCBCGGG-TTCSEE------CTTTTTTCTTCCEEECCTT-CCEECTT--TTTTCTTCCEEECCTT-CCEECT-TT T ss_pred hCCCCCCeEEeC-CCCCEe------chhhhhCCCCCceEECCcc-eeEcchh--hhhhcccceeeecCCC-ceEEch-hh Confidence 345556666655 333321 2234467778888888887 7776654 3467778888888877 666663 24 Q ss_pred cCCCCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcC Q FBpp0305286 221 INKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 221 l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~ 261 (559) |.+.+|++|++.+ .+..+.+.. +..+++|+.|++++|.. T Consensus 179 f~~~~L~~L~l~~-~l~~i~~~~-f~~~~~L~~L~l~~n~l 217 (394) T 4gt6_A 179 FTGTALTQIHIPA-KVTRIGTNA-FSECFALSTITSDSESY 217 (394) T ss_dssp TTTCCCSEEEECT-TCCEECTTT-TTTCTTCCEEEECCSSS T ss_pred cccCCccEEEeCC-ceeEEcccc-ccCCccceEEEcCCccc Confidence 4445677777776 666655554 66667777777766543No 239>4ow2_A YOP effector YOPM; leucine-rich repeat, LRR, toxin; 3.20A {Yersinia enterocolitica} Probab=99.05 E-value=9.2e-10 Score=118.48 Aligned_cols=74 Identities=20% Similarity=0.147 Sum_probs=37.8 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+|+.++. +.++++|+.|+|++|+++.++. .+ +|++|++++|.+.+++. .+++|+ T Consensus 98 ~~L~~L~L~~n~l~~lp~----~~~l~~L~~L~l~~n~l~~l~~-----~l~~L~~L~l~~n~l~~l~~-----~~~~L~ 163 (448) T 4ow2_A 98 PLLVDLRVFNNQLEELPE----LQNLPFLTEIYANNNSLKTLPD-----LPPSLVDLNVRENYLTALPE-----LPQSLI 163 (448) T ss_dssp TTCCEEECCSSCCSCCCC----CTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCCCCC-----CCTTCC T ss_pred CcCCEEECCCCCcCCCcC----cCCCCCCCEEECCCCccCcccc-----cCccCCEEECCCCcCCcccc-----ccccCC Confidence 355555555555555543 2455555555555555555442 13 55555555555554332 125555 Q ss_pred EEeCCCCcC Q FBpp0305286 253 NVHGCVQLG 261 (559) Q Consensus 253 ~Ldl~~N~~ 261 (559) .|++++|.+ T Consensus 164 ~L~l~~n~l 172 (448) T 4ow2_A 164 FLDISDNIL 172 (448) T ss_dssp EEECCSSCC T ss_pred EEECCCCcc Confidence 555555543No 240>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Probab=99.05 E-value=5.7e-12 Score=119.99 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=97.1 Q ss_pred CCCCCCccccccccCCcch-hhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccC Q FBpp0305286 141 SRFHASPELSLHFCPLHMV-KLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELN 219 (559) Q Consensus 141 s~l~~L~~L~l~~~~l~~~-~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~ 219 (559) ..+.+++.|.+.++.+... ..+ ..+...+..+++|++|+|++|+|+.++. +..+++|+.|+|++|+|+.++. T Consensus 15 ~~~~~l~~L~l~~~~l~~~~~~~-~~l~~~l~~~~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~l~~-- 87 (198) T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNLIKKIEN-- 87 (198) T ss_dssp CCCCCCCCTTCSEEECCBCCTTC-CCCHHHHHHTTTCSEEECSEEEESCCCC----HHHHTTCCEEEEEEEEECSCSS-- T ss_pred hccCcceeeeeeeccccCccccH-hHHHHHHhcCCCCCEEECCCCccccccc----ccCCCCccEEECCCCcceeccc-- Confidence 3455566666666655421 000 0111233678999999999999988743 3778999999999999998874 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCCc---hhccCCCCcccccCCCCCCccchhhhhh Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGEST---EAVDNIPKSQQLQGGGTNGLKFCQDFIS 292 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~~---~~~~~lp~Lk~L~l~~~~l~~L~~n~L~ 292 (559) .+..+ +|++|+|++|.+.+.+ . +..+++|+.|++++|.+... ..+..+++|+.| ++.+|.+. T Consensus 88 ~~~~~~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~L~~n~i~~~~~~~~l~~l~~L~~L--------~l~~n~~~ 153 (198) T 1ds9_A 88 LDAVADTLEELWISYNQIASLS--G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL--------LLAGNPLY 153 (198) T ss_dssp HHHHHHHCSEEEEEEEECCCHH--H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE--------EECSCHHH T ss_pred hhcccCcCCEEECcCCccccCc--c-cccCCCCCEEECcCCccCCcHhHHHHhcCCCCCEE--------EecCCccc Confidence 56677 8999999999998873 2 77889999999999976643 357788899999 55555553No 241>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Probab=99.04 E-value=2.1e-11 Score=128.15 Aligned_cols=189 Identities=12% Similarity=-0.037 Sum_probs=114.3 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc- Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI- 221 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l- 221 (559) +++++.|.+.+|.++... .......+....++|++|+|++|+|+.... ..+...+++|+.|+|++|+|+... ...+ T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~L~~L~Ls~n~l~~~~-~~~l~ 147 (372) T 3un9_A 71 LSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASCQLDPAGL-RTLLPVFLRARKLGLQLNSLGPEA-CKDLR 147 (372) T ss_dssp HTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTCCCCHHHH-HHTHHHHHTEEEEECCSSCCCHHH-HHHHH T ss_pred HhhCCEEEecCCCCCHHH-HHHHHHHHhcCCCCCcEEEeeccCCCHHHH-HHHHHHHHHhCHhhcCCCCCCHHH-HHHHH Confidence 456667777777776321 111111122334689999999999876322 122346778999999999987543 2233 Q ss_pred ----CCC-CccEEEeecCcCCCcchhH---HhccCCCccEEeCCCCcCCC------chhccCCCCcccccCCCCCCccch Q FBpp0305286 222 ----NKL-SCKTIFLAGNGLAKLSVDV---IRKMLPQLKNVHGCVQLGES------TEAVDNIPKSQQLQGGGTNGLKFC 287 (559) Q Consensus 222 ----~~l-~L~~L~L~~N~l~~~~~~~---il~~lp~L~~Ldl~~N~~~~------~~~~~~lp~Lk~L~l~~~~l~~L~ 287 (559) ..+ +|++|+|++|.++...... .+..+++|++|++++|.+.. ...+..+++|+.|++++|.+.+.. T Consensus 148 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 227 (372) T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372) T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH T ss_pred HHHhccCCCccEEECCCCCCcHHHHHHHHHHHhhCCCccEEeccCCCCChHHHHHHHHHhccCCccCeEECCCCCCCHHH Confidence 456 8999999999887743221 26778999999999987653 345667788999966666554433 Q ss_pred hhhhhhhcccccCcccccccccccc-ccceeeeecCC-c-----Cccccceeec--CCcccc Q FBpp0305286 288 QDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV-Q-----LNYVYGYKLY--NRNQKR 340 (559) Q Consensus 288 ~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~-~-----~~~~L~~L~l--s~N~i~ 340 (559) ...+.. .+. ..++|+.|++ .|.+....... . ....+++|.+ ++|.++ T Consensus 228 ~~~l~~---~l~---~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~~~n~l~ 283 (372) T 3un9_A 228 ALALAR---AAR---EHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372) T ss_dssp HHHHHH---HHH---HCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH T ss_pred HHHHHH---HHH---hCCCcCEEeccCCCCCHHHHHHHHHHHhcCCchhhhHHhhcCCCCcc Confidence 322222 221 4678899999 66655433221 1 1166888888 888775No 242>4per_A Ribonuclease inhibitor; leucine-rich repeat, protein-protein complex, hydrolase-HYDR inhibitor complex; 1.92A {Gallus gallus} Probab=99.03 E-value=8.9e-11 Score=125.42 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=6.4 Q ss_pred cCCCccEEEccCCcC Q FBpp0305286 172 LFPHVTSLVLSNNYL 186 (559) Q Consensus 172 ~l~~L~~L~Ls~N~L 186 (559) .+++|++|+|++|.+ T Consensus 167 ~~~~L~~L~Ls~n~l 181 (460) T 4per_A 167 AKPTLKELSLSNNTL 181 (460) T ss_dssp TCTTCCEEECCSSCC T ss_pred cCCCCCEEECCCCcC Confidence 334444444444443No 243>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Probab=99.03 E-value=1.4e-10 Score=123.20 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=104.2 Q ss_pred hccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) |.. .+|+.|+|+ |+++.++.. .|.++++|+.|+|++|+|+.++. ..|...+|++|+|. |.+..+.... |..++ T Consensus 154 F~~-~~L~~l~l~-n~l~~i~~~--~F~~~~~L~~l~L~~n~l~~i~~-~~f~~~~L~~l~l~-n~l~~i~~~~-F~~~~ 226 (401) T 4fdw_A 154 FFN-STVQEIVFP-STLEQLKED--IFYYCYNLKKADLSKTKITKLPA-STFVYAGIEEVLLP-VTLKEIGSQA-FLKTS 226 (401) T ss_dssp TTT-CCCCEEECC-TTCCEECSS--TTTTCTTCCEEECTTSCCSEECT-TTTTTCCCSEEECC-TTCCEECTTT-TTTCT T ss_pred ccC-CCceEEEcc-ccccEehHH--HhhCcccCCeEEcCCCcceecch-hheecCCCcEEEeC-CCceEEchHH-hhCCC Confidence 344 478899998 888887654 35788899999999999888875 35553488899888 7787777766 88888 Q ss_pred CccEEeCCCCc-CCCchhccCCCCcccccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-cccee-----eeec Q FBpp0305286 250 QLKNVHGCVQL-GESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMF-----SLSV 321 (559) Q Consensus 250 ~L~~Ldl~~N~-~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~-----sl~~ 321 (559) +|+.|++..|. ..+...|.. +.|+.+ .+ .|.++.+.. .|. ++++|+.|++ +|.+. .++. T Consensus 227 ~L~~L~l~~nl~~i~~~~F~~-~~L~~l--------~l-~n~l~~i~~~~F~---~~~~L~~L~l~~N~l~~~~~~~i~~ 293 (401) T 4fdw_A 227 QLKTIEIPENVSTIGQEAFRE-SGITTV--------KL-PNGVTNIASRAFY---YCPELAEVTTYGSTFNDDPEAMIHP 293 (401) T ss_dssp TCCCEECCTTCCEECTTTTTT-CCCSEE--------EE-ETTCCEECTTTTT---TCTTCCEEEEESSCCCCCTTCEECT T ss_pred CCcEEEeCCcceEeccccccc-CCceEE--------Ee-CcccCEechhHhh---CCCCCCEEEecCccccCCccceEcH Confidence 99999988872 123445555 678888 44 244555433 332 5788888888 55554 3432 Q ss_pred C-CcCccccceeecCCcccc Q FBpp0305286 322 P-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 322 ~-~~~~~~L~~L~ls~N~i~ 340 (559) . +..++.|+.++++ |.+. T Consensus 294 ~~f~~~~~L~~l~L~-n~l~ 312 (401) T 4fdw_A 294 YCLEGCPKLARFEIP-ESIR 312 (401) T ss_dssp TTTTTCTTCCEECCC-TTCC T ss_pred HhhcCCCCCCEEEcC-CCce Confidence 2 3566788888888 5554No 244>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Probab=99.02 E-value=2.6e-10 Score=116.91 Aligned_cols=168 Identities=7% Similarity=-0.084 Sum_probs=119.6 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCC------CCCCC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANR------IQDLG 216 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~------L~~l~ 216 (559) +.+|+.|.+ .+.+..+ ....|.+|++|+.|+|++|.|+.++... |. .+|+.|++++|. ++.+. T Consensus 100 ~~~L~~l~l-~n~l~~i------~~~~F~~~~~L~~l~l~~n~l~~i~~~~--f~--~~L~~l~l~~n~~~~f~~~~~L~ 168 (329) T 3sb4_A 100 KQTLEKVIL-SEKIKNI------EDAAFKGCDNLKICQIRKKTAPNLLPEA--LA--DSVTAIFIPLGSSDAYRFKNRWE 168 (329) T ss_dssp CTTCCC-CB-CTTCCEE------CTTTTTTCTTCCEEEBCCSSCCEECTTS--SC--TTTCEEEECTTCTHHHHTSTTTT T ss_pred CCCceEEEe-cCCcEEe------hhhhhhCCCCCcEEEeCcchhhhhhhHh--hh--ccceEEEecCcchhhhhcccccc Confidence 556666666 5555432 2345689999999999999999988762 33 489999999884 11111 Q ss_pred ccC-------------------------------c--------------c----CCC-CccEEEeecCcCCCcchhHHhc Q FBpp0305286 217 ELN-------------------------------Y--------------I----NKL-SCKTIFLAGNGLAKLSVDVIRK 246 (559) Q Consensus 217 ~l~-------------------------------~--------------l----~~l-~L~~L~L~~N~l~~~~~~~il~ 246 (559) .+. . + ..+ +|++|+|++|.++.+++.. |. T Consensus 169 ~l~~~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~i~~i~~~~-f~ 247 (329) T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT-FA 247 (329) T ss_dssp TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-TT T ss_pred eeeecCCeeeEEEEeeccchhhhhhhhhcccCcccceeEEecceechHHHHHHHHhcccCcEEEcCCCcccEeCHhh-hc Confidence 100 0 0 146 8999999999999998876 89 Q ss_pred cCCCccEEeCCCC-cCCCchhccCCCCcc-cccCCCCCCccchhhhhhhhcc-cccCcccccccccccc-ccceeeeecC Q FBpp0305286 247 MLPQLKNVHGCVQ-LGESTEAVDNIPKSQ-QLQGGGTNGLKFCQDFISSYYT-FFDDTEERFKLKKYYD-DQAMFSLSVP 322 (559) Q Consensus 247 ~lp~L~~Ldl~~N-~~~~~~~~~~lp~Lk-~L~l~~~~l~~L~~n~L~~~~~-~~d~~~~l~~L~~L~l-~N~l~sl~~~ 322 (559) .+++|+.|++.++ ...+...|..+++|+ .+ ++.. .++.+.. .|. ++++|+.+++ .|.+.+++.. T Consensus 248 ~~~~L~~l~l~n~l~~i~~~~f~~~~~L~~~l--------~l~~-~l~~i~~~~f~---~~~~L~~l~l~~n~l~~i~~~ 315 (329) T 3sb4_A 248 QKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTL--------ELPA-SVTAIEFGAFM---GCDNLRYVLATGDKITTLGDE 315 (329) T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEE--------EECT-TCCEECTTTTT---TCTTEEEEEECSSCCCEECTT T ss_pred CCccCcEEEcCCCccEecHhhhhCchhcceEE--------Eecc-cceEEchhhhh---CCCCCCEEEecCCcCCEeCHH Confidence 9999999999944 223556788999999 99 5555 5555543 333 6899999999 8888888653 Q ss_pred -CcCccccceeec Q FBpp0305286 323 -VQLNYVYGYKLY 334 (559) Q Consensus 323 -~~~~~~L~~L~l 334 (559) +..++.|+.+++ T Consensus 316 ~f~~~~~L~~l~l 328 (329) T 3sb4_A 316 LFGNGVPSKLIYK 328 (329) T ss_dssp TTCTTCCCCEEEC T ss_pred HhhCCCccceeec Confidence 466777777664No 245>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} SCOP: c.10.2.0 PDB: 3g3a_A 3g3b_A 3twi_D Probab=99.01 E-value=1.6e-09 Score=100.88 Aligned_cols=102 Identities=21% Similarity=0.093 Sum_probs=68.4 Q ss_pred ccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEE Q FBpp0305286 176 VTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNV 254 (559) Q Consensus 176 L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~L 254 (559) .+.|++++|+|+.++.. + .++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.|.++++.. +..+++|+.| T Consensus 11 ~~~l~ls~n~l~~lp~~--~---~~~l~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L~~L 83 (170) T 3g39_A 11 GTTVDCSGKSLASVPTG--I---PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGV-FDKLTQLTQL 83 (170) T ss_dssp TTEEECTTSCCSSCCSC--C---CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEE T ss_pred CCEEEeCCCCccccCCC--C---CCCCcEEEeCCCcCCccCc-chhcCCcCCCEEECCCCcCCcCChhH-hcCCCCCCEE Confidence 46777777777777653 1 2677777777777777652 356777 7777777777777776654 6777777777 Q ss_pred eCCCCcCCC--chhccCCCCcccccCCCCCCc Q FBpp0305286 255 HGCVQLGES--TEAVDNIPKSQQLQGGGTNGL 284 (559) Q Consensus 255 dl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~ 284 (559) ++++|.+.. ...+..+++|+.|++++|.+. T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 115 (170) T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170) T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC T ss_pred ECcCCcccEECHHHHhCCCCCCEEEecCCCcC Confidence 777775542 234667777777755555443No 246>4k17_A Leucine-rich repeat-containing protein 16A; PH domain, LRR domain, lipid binding, protein-protein intera phosphatidylserine, phosphatidylinositol; HET: OHB; 2.90A {Mus musculus} Probab=99.00 E-value=1.9e-10 Score=129.82 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=55.2 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCC-----CCcCc-cccccCCCCCCEEeCCCCCCCCC Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLC-----SLKAF-AGNSQSFASLERLDISANRIQDL 215 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~-----~l~~~-~~l~~~l~~L~~L~Ls~N~L~~l 215 (559) ++++|+.|.+.+|.+....... ...+..+++|+.|+|++|+++ .++.. ..++..+++|+.|+|++|.++.. T Consensus 364 ~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~ip~~l~~~l~~~~~L~~L~L~~n~l~~~ 440 (669) T 4k17_A 364 QPNTIVHLDLSNTECSLEMVCS---ALLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPE 440 (669) T ss_dssp SCCCCCEEECTTSCCBHHHHHH---HHHHHSTTTCCEEECCSCBSCSSSCCCCCHHHHHHHHHCSSCCEEECTTSCCCHH T ss_pred cCCCcCeEecCCCCCChHHHHH---HHHhhccCCCCEEECCCCccCchhhhhHHHHHHHHHhcCCcccEEECcCCcCCHH Confidence 4567777777777654211111 112256677777777777776 33321 00013455555555555555432 Q ss_pred CccCc----cCCC-Ccc--EEEeecCcC--------CCcchhHHhccCCCccEEeCCCCcC Q FBpp0305286 216 GELNY----INKL-SCK--TIFLAGNGL--------AKLSVDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 216 ~~l~~----l~~l-~L~--~L~L~~N~l--------~~~~~~~il~~lp~L~~Ldl~~N~~ 261 (559) . ... +..+ +|+ +|+|++|.+ .+..+.. +..+++|+.|++++|.. T Consensus 441 ~-~~~l~~~l~~~~~L~~~~L~Ls~n~l~~~~~~~g~~~l~~~-l~~~~~L~~L~Ls~n~l 499 (669) T 4k17_A 441 P-LKALLLGLACNHSLKGVSLDLSNCELGHCLRSGGAQVLEGC-IAEIHNITSLDISDNGL 499 (669) T ss_dssp H-HHHHHHHHHTCSSCCSEEEECTTSCHHHHHHHSCSSSSSCC-SSCCSSEEEEECTTSCC T ss_pred H-HHHHHHHHhhCCCcceeEEECCCCcCccccCcchHHHHHHH-HhhCCcccEEECCCCCC Confidence 1 001 1333 455 555555555 1222222 44555555555555533No 247>4puf_A E3 ubiquitin-protein ligase SLRP; LRR domain, NEL domain, E3 ubiquitin ligase, human thioredox ligase -oxidoreductase complex, ligase-oxidoreductase compl; 3.30A {Salmonella enterica subsp} Probab=99.00 E-value=1.9e-09 Score=121.32 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=71.1 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCCCccEEEeecCcCCCcchhHHhccCCCccE Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKN 253 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~ 253 (559) ++|++|+|++|+|+.++.. ..++|+.|+|++|+|+.++. .+. .+|++|+|++|.+.+++.. .+++|+. T Consensus 92 ~~L~~L~Ls~n~l~~i~~~-----~~~~L~~L~Ls~N~l~~lp~--~~~-~~L~~L~Ls~N~l~~lp~~----~~~~L~~ 159 (637) T 4puf_A 92 GNIKTLYANSNQLTSIPAT-----LPDTIQEMELSINRITELPE--RLP-SALQSLDLFHNKISCLPEN----LPEELRY 159 (637) T ss_dssp SCCSEEEEESSCCCCCCSC-----CCTTCCEEECCSCCCCCCCS--CCC-TTCCEEECCSCCCCCCCSC----CCTTCCE T ss_pred CCCCEEEeeCCCCCCCChh-----hcCCCCEEEeeCCcCCccCh--hhh-ccceEEEecCCccccCChh----hcCCCCE Confidence 5666666666666665543 12566666666666666653 111 3666666666666664432 1256666 Q ss_pred EeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCCcCcccccee Q FBpp0305286 254 VHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPVQLNYVYGYK 332 (559) Q Consensus 254 Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~~~~~~L~~L 332 (559) |++++|.+...+... .++|+.| ++++|.+..++... .++|+.|++ .|.+.++ +...+++|++| T Consensus 160 L~Ls~n~l~~l~~~~-~~~L~~L--------~Ls~N~l~~l~~~~-----~~~L~~L~Ls~N~l~~l--~~~~l~~L~~L 223 (637) T 4puf_A 160 LSVYDNSIRTLPAHL-PSEITHL--------NVQSNSLTALPETL-----PPGLKTLEAGENALTSL--PASLPPELQVL 223 (637) T ss_dssp EECTTCBCSCCCSCC-CSCCSEE--------ECCSBCCCCCCSCC-----CTTCCEEECTTCCCCCC--CSCCCTTCCEE T ss_pred EECCCCcccccCccc-cCCcCEE--------EecCCccccCchhh-----hccCcEEECCCCCCCCC--ChhhcCCCCEE Confidence 666666443221111 1456666 33333333333211 245555555 4444432 22334555555 Q ss_pred ecCCcccc Q FBpp0305286 333 LYNRNQKR 340 (559) Q Consensus 333 ~ls~N~i~ 340 (559) ++++|.+. T Consensus 224 ~Ls~N~l~ 231 (637) T 4puf_A 224 DVSKNQIT 231 (637) T ss_dssp ECCSSCCC T ss_pred ECcCCCCC Confidence 55555554No 248>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Probab=98.99 E-value=1.2e-10 Score=121.02 Aligned_cols=189 Identities=15% Similarity=0.020 Sum_probs=85.0 Q ss_pred CCCccccccccCCcchhhhHHHHHHhhccC-CCccEEEccCCcCCCCcCc--cccccCC-CCCCEEeCCCCCCCCCCcc- Q FBpp0305286 144 HASPELSLHFCPLHMVKLLETVLVLSNHLF-PHVTSLVLSNNYLCSLKAF--AGNSQSF-ASLERLDISANRIQDLGEL- 218 (559) Q Consensus 144 ~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l-~~L~~L~Ls~N~L~~l~~~--~~l~~~l-~~L~~L~Ls~N~L~~l~~l- 218 (559) .+|+.|.+.+|.+... .+..+...+..+ ++|++|+|++|+++..... ..++..+ ++|+.|+|++|+++..... T Consensus 80 ~~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 157 (362) T 3goz_A 80 ANVTSLNLSGNFLSYK--SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362) T ss_dssp TTCCEEECCSSCGGGS--CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH T ss_pred CCCcEEECCCCcCchH--HHHHHHHHHHhCCCCceEEECcCCCCCcccHHHHHHHHHhCCCceeEEECCCCcCchHHHHH Confidence 4555555555544311 111222222344 4666666666666553221 1111222 3666666666666532210 Q ss_pred --CccCCC--CccEEEeecCcCCCcchhH---HhccCC-CccEEeCCCCcCCC--chhccCC-----CCcccccCCCCCC Q FBpp0305286 219 --NYINKL--SCKTIFLAGNGLAKLSVDV---IRKMLP-QLKNVHGCVQLGES--TEAVDNI-----PKSQQLQGGGTNG 283 (559) Q Consensus 219 --~~l~~l--~L~~L~L~~N~l~~~~~~~---il~~lp-~L~~Ldl~~N~~~~--~~~~~~l-----p~Lk~L~l~~~~l 283 (559) ..+..+ +|++|+|++|.+.+..+.. .+..+| +|+.|++++|.+.. ...+..+ ++|+.|++++|.+ T Consensus 158 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~p~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 237 (362) T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362) T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC T ss_pred HHHHHHhcCcCCcEeeccCCCCCcccHHHHHHHHHhCCCCCCEEECCCCCCCcccHHHHHHHHHhCCCCeeEEECcCCCC Confidence 011121 5666666666665543322 123343 66666666664321 2222222 4666664444443 Q ss_pred ccchhhhhhhhcccccCcccccccccccc-ccceeeeecC--------CcCccccceeecCCcccc Q FBpp0305286 284 LKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP--------VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 284 ~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~--------~~~~~~L~~L~ls~N~i~ 340 (559) .+.....+.... . ..++|+.|++ +|.+..++.. ...++.|+++++++|.+. T Consensus 238 ~~~~~~~l~~l~---~---~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~~~l~~L~~l~l~~n~i~ 297 (362) T 3goz_A 238 HGPSLENLKLLK---D---SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362) T ss_dssp CCCCHHHHHHTT---T---TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC T ss_pred CcHHHHHHHHHh---c---cCCCccEEEccCCcccccCHHHHHHHHHHhccCCeEEEEECCCCcCC Confidence 333222221110 0 2466666666 4543332211 123355666777777665No 249>4k17_A Leucine-rich repeat-containing protein 16A; PH domain, LRR domain, lipid binding, protein-protein intera phosphatidylserine, phosphatidylinositol; HET: OHB; 2.90A {Mus musculus} Probab=98.98 E-value=3.3e-10 Score=127.77 Aligned_cols=182 Identities=13% Similarity=-0.024 Sum_probs=94.3 Q ss_pred CCccccccccCCcch--hhhHHHHHHhhccCCCccEEEccCCcCCCCcC--ccccccCCCCCCEEeCCCCCCCC--CCcc Q FBpp0305286 145 ASPELSLHFCPLHMV--KLLETVLVLSNHLFPHVTSLVLSNNYLCSLKA--FAGNSQSFASLERLDISANRIQD--LGEL 218 (559) Q Consensus 145 ~L~~L~l~~~~l~~~--~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~--~~~l~~~l~~L~~L~Ls~N~L~~--l~~l 218 (559) +|+.|.+.+|.+... ..+...+......+++|++|+|++|+++.... +...+..+++|+.|+|++|.+.. ++.. T Consensus 307 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 386 (669) T 4k17_A 307 GLKHLNLSKTSLSPKGVNSLCQSLSANPLTASTLTHLDLSGNALRGDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCSA 386 (669) T ss_dssp CCSEEECTTSCCCHHHHHHHHHHHHHSSSHHHHCCEEECTTSCCSSSCCHHHHHHHHSCCCCCEEECTTSCCBHHHHHHH T ss_pred CCcEEEccCCCCCHHHHHHHHHHHHhCccccCCcCEEECCCCcCCcccHHHHHHHHhcCCCcCeEecCCCCCChHHHHHH Confidence 677777777766521 01111111110134578888888887775322 11123567777777777777652 1111 Q ss_pred CccCCC-CccEEEeecCcCCC----cchhHH---hccCCCccEEeCCCCcCCCc--h----hccCCCCcc--cccCCCCC Q FBpp0305286 219 NYINKL-SCKTIFLAGNGLAK----LSVDVI---RKMLPQLKNVHGCVQLGEST--E----AVDNIPKSQ--QLQGGGTN 282 (559) Q Consensus 219 ~~l~~l-~L~~L~L~~N~l~~----~~~~~i---l~~lp~L~~Ldl~~N~~~~~--~----~~~~lp~Lk--~L~l~~~~ 282 (559) -.+..+ +|++|+|++|.+++ ..+..+ +..+++|+.|++++|.+... . .+..+++|+ .| T Consensus 387 ~~~~~~~~L~~L~Ls~n~l~~~~~~~ip~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~~~L------ 460 (669) T 4k17_A 387 LLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPEPLKALLLGLACNHSLKGVSL------ 460 (669) T ss_dssp HHHHSTTTCCEEECCSCBSCSSSCCCCCHHHHHHHHHCSSCCEEECTTSCCCHHHHHHHHHHHHTCSSCCSEEE------ T ss_pred HHhhccCCCCEEECCCCccCchhhhhHHHHHHHHHhcCCcccEEECcCCcCCHHHHHHHHHHHhhCCCcceeEE------ Confidence 022455 77777777777762 333221 35667777777777654321 1 125566777 66 Q ss_pred Cccchhhhh---------hhhcccccCcccccccccccc-ccceeeeecC-----CcCccccceeecCCcc Q FBpp0305286 283 GLKFCQDFI---------SSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-----VQLNYVYGYKLYNRNQ 338 (559) Q Consensus 283 l~~L~~n~L---------~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-----~~~~~~L~~L~ls~N~ 338 (559) ++++|.+ ..++..+. ++++|+.|++ .|.+... .+ ...++.|++|++++|. T Consensus 461 --~Ls~n~l~~~~~~~g~~~l~~~l~---~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~~~~L~~L~L~~n~ 525 (669) T 4k17_A 461 --DLSNCELGHCLRSGGAQVLEGCIA---EIHNITSLDISDNGLESD-LSTLIVWLSKNRSIQHLALGKNF 525 (669) T ss_dssp --ECTTSCHHHHHHHSCSSSSSCCSS---CCSSEEEEECTTSCCGGG-HHHHHHHHHTCSSCCEEECTTCC T ss_pred --ECCCCcCccccCcchHHHHHHHHh---hCCcccEEECCCCCCchH-HHHHHHHHhhCCCCCEEECCCCc Confidence 3333333 12233222 4566666666 4444321 11 2345566666666665No 250>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Probab=98.98 E-value=1e-10 Score=121.48 Aligned_cols=187 Identities=16% Similarity=0.061 Sum_probs=96.1 Q ss_pred CCccccccccCCcchhhhHHHHHHhhccC-CCccEEEccCCcCCCCcC--ccccccCC-CCCCEEeCCCCCCCCCCccCc Q FBpp0305286 145 ASPELSLHFCPLHMVKLLETVLVLSNHLF-PHVTSLVLSNNYLCSLKA--FAGNSQSF-ASLERLDISANRIQDLGELNY 220 (559) Q Consensus 145 ~L~~L~l~~~~l~~~~~~~~~l~~i~~~l-~~L~~L~Ls~N~L~~l~~--~~~l~~~l-~~L~~L~Ls~N~L~~l~~l~~ 220 (559) +|+.|.+.+|.+... .+..+......+ ++|++|+|++|.++.... +..++..+ ++|+.|+|++|+++.... .. T Consensus 52 ~L~~L~L~~n~l~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~l~~n~l~~~~~-~~ 128 (362) T 3goz_A 52 SVTSLNLSGNSLGFK--NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SE 128 (362) T ss_dssp TCCEEECCSSCGGGS--CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HH T ss_pred CceEEECCCCCCCHH--HHHHHHHHHHhCCCCCcEEECCCCcCchHHHHHHHHHHHhCCCCceEEECcCCCCCcccH-HH Confidence 566666666655431 011222222333 677777777777764321 11122344 577777777777765431 12 Q ss_pred c----CC-C-CccEEEeecCcCCCcchhHH---hccC-CCccEEeCCCCcCCC--ch----hccCCC-CcccccCCCCCC Q FBpp0305286 221 I----NK-L-SCKTIFLAGNGLAKLSVDVI---RKML-PQLKNVHGCVQLGES--TE----AVDNIP-KSQQLQGGGTNG 283 (559) Q Consensus 221 l----~~-l-~L~~L~L~~N~l~~~~~~~i---l~~l-p~L~~Ldl~~N~~~~--~~----~~~~lp-~Lk~L~l~~~~l 283 (559) + .. . +|++|+|++|.+.+.....+ +..+ ++|+.|++++|.+.. .. .+..+| +|+.|++++|.+ T Consensus 129 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~p~~L~~L~L~~n~l 208 (362) T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362) T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG T ss_pred HHHHHHhCCCceeEEECCCCcCchHHHHHHHHHHHhcCcCCcEeeccCCCCCcccHHHHHHHHHhCCCCCCEEECCCCCC Confidence 2 22 2 67777777777765443331 3334 577777777775432 11 233443 777774444433 Q ss_pred ccchhhhhhhhcccccCcccc-cccccccc-ccceeeeecCC-----cCccccceeecCCcccc Q FBpp0305286 284 LKFCQDFISSYYTFFDDTEER-FKLKKYYD-DQAMFSLSVPV-----QLNYVYGYKLYNRNQKR 340 (559) Q Consensus 284 ~~L~~n~L~~~~~~~d~~~~l-~~L~~L~l-~N~l~sl~~~~-----~~~~~L~~L~ls~N~i~ 340 (559) .+.....+... +. .. ++|+.|++ .|.+....... ..++.|+.|++++|.+. T Consensus 209 ~~~~~~~l~~~---l~---~~~~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~L~~L~L~~n~l~ 266 (362) T 3goz_A 209 GLKSYAELAYI---FS---SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362) T ss_dssp GGSCHHHHHHH---HH---HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT T ss_pred CcccHHHHHHH---HH---hCCCCeeEEECcCCCCCcHHHHHHHHHhccCCCccEEEccCCccc Confidence 32221111111 10 12 47777777 55554443221 23467777777777655No 251>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Probab=98.96 E-value=1.8e-09 Score=112.80 Aligned_cols=152 Identities=11% Similarity=0.065 Sum_probs=121.9 Q ss_pred hhccCCCccEEEccCC-----------------------------------cCCCCcCccccccCCCCCCEEeCCCCCCC Q FBpp0305286 169 SNHLFPHVTSLVLSNN-----------------------------------YLCSLKAFAGNSQSFASLERLDISANRIQ 213 (559) Q Consensus 169 i~~~l~~L~~L~Ls~N-----------------------------------~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~ 213 (559) .+.++++|+.|++++| .++.++.. .|..+++|+.|+|+ |.++ T Consensus 153 ~f~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ip~~l~~i~~~--~f~~~~~L~~l~l~-n~l~ 229 (379) T 4h09_A 153 IGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAY--GFSYGKNLKKITIT-SGVT 229 (379) T ss_dssp TTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTT--TTTTCSSCSEEECC-TTCC T ss_pred cccCCCCccEEEecCCCceEEeeeeEEecCCCceEEEccCcccceEEEECCCeEEEchH--hhhCCCccEEEEcC-CceE Confidence 4578999999999999 77777654 35789999999999 8898 Q ss_pred CCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcC--CCchhccCCCCcccccCCCCCCccchhhh Q FBpp0305286 214 DLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLG--ESTEAVDNIPKSQQLQGGGTNGLKFCQDF 290 (559) Q Consensus 214 ~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~--~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~ 290 (559) .++. ..|.++ +|++|+|.+| +..+.... +..+++|+.|++ .|.. .....+..++.|+.+ .+.+|. T Consensus 230 ~i~~-~~f~~~~~L~~l~l~~n-l~~i~~~~-f~~~~~L~~l~l-~n~l~~~~~~~f~~~~~L~~l--------~l~~N~ 297 (379) T 4h09_A 230 TLGD-GAFYGMKALDEIAIPKN-VTSIGSFL-LQNCTALKTLNF-YAKVKTVPYLLCSGCSNLTKV--------VMDNSA 297 (379) T ss_dssp EECT-TTTTTCSSCCEEEECTT-CCEECTTT-TTTCTTCCEEEE-CCCCSEECTTTTTTCTTCCEE--------EECCTT T ss_pred EEch-hhccCCCCCcEEEcCCc-ccEECcch-hcCCcCCcEEEc-cccccchhhhhccCCCCCcEE--------eeCCCC Confidence 8874 588998 9999999999 88877766 899999999999 4433 345668899999999 666666 Q ss_pred hhhhcccccCccccccccccccccceeeeecC-CcCccccceeecCCc Q FBpp0305286 291 ISSYYTFFDDTEERFKLKKYYDDQAMFSLSVP-VQLNYVYGYKLYNRN 337 (559) Q Consensus 291 L~~~~~~~d~~~~l~~L~~L~l~N~l~sl~~~-~~~~~~L~~L~ls~N 337 (559) ++.++..... ++++|+.+++.|.+..+... +..++.|+.+++++| T Consensus 298 l~~i~~~~f~--~~~~L~~l~l~n~l~~i~~~~f~~~~~L~~l~l~~n 343 (379) T 4h09_A 298 IETLEPRVFM--DCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPKS 343 (379) T ss_dssp CCEECTTTTT--TCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCTT T ss_pred ceEEChhhcc--CCCCCcEEEcCcccceehHHHhhCcccCceEEcCCc Confidence 6666543222 68999999999888887654 466789999999998No 252>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} SCOP: c.10.2.0 PDB: 3g3a_A 3g3b_A 3twi_D Probab=98.96 E-value=2.7e-09 Score=99.38 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=75.3 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) +.|+.|+|++|+|+.+++. .+.++++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.|.++++.. +..+++|+ T Consensus 30 ~~l~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~ 105 (170) T 3g39_A 30 TTTQVLYLYDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPRGA-FDNLKSLT 105 (170) T ss_dssp TTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCC T ss_pred CCCcEEEeCCCcCCccCcc--hhcCCcCCCEEECCCCcCCcCCh-hHhcCCCCCCEEECcCCcccEECHHH-HhCCCCCC Confidence 6899999999999998653 35889999999999999999884 467889 9999999999999988765 88999999 Q ss_pred EEeCCCCcCC Q FBpp0305286 253 NVHGCVQLGE 262 (559) Q Consensus 253 ~Ldl~~N~~~ 262 (559) .|++++|... T Consensus 106 ~L~l~~N~~~ 115 (170) T 3g39_A 106 HIWLLNNPWD 115 (170) T ss_dssp EEECCSSCBC T ss_pred EEEecCCCcC Confidence 9999999754No 253>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Probab=98.96 E-value=7e-10 Score=115.97 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=54.4 Q ss_pred CCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCc-CCCchhccCCCCcccccCCCCCCccchh Q FBpp0305286 211 RIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQL-GESTEAVDNIPKSQQLQGGGTNGLKFCQ 288 (559) Q Consensus 211 ~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~-~~~~~~~~~lp~Lk~L~l~~~~l~~L~~ 288 (559) .++.++. ..|.++ +|++|++. |.+..+.+.. +..+++|+.|++..|. ..+...+..+++|+.+ ++ . T Consensus 204 ~l~~i~~-~~f~~~~~L~~l~l~-n~l~~i~~~~-f~~~~~L~~l~l~~nl~~i~~~~f~~~~~L~~l--------~l-~ 271 (379) T 4h09_A 204 TVKTVTA-YGFSYGKNLKKITIT-SGVTTLGDGA-FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTL--------NF-Y 271 (379) T ss_dssp TCCEECT-TTTTTCSSCSEEECC-TTCCEECTTT-TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEE--------EE-C T ss_pred CeEEEch-HhhhCCCccEEEEcC-CceEEEchhh-ccCCCCCcEEEcCCcccEECcchhcCCcCCcEE--------Ec-c Confidence 4444432 244555 55555555 4455544443 5555555555555541 1123344555555555 22 2 Q ss_pred hhhhhhcccccCcccccccccccc-ccceeeeecC-CcCccccceeecCCcccc Q FBpp0305286 289 DFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVP-VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 289 n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~-~~~~~~L~~L~ls~N~i~ 340 (559) |.+..+...... ++++|+.+++ .|.+..++.. +..++.|+.++++ |.++ T Consensus 272 n~l~~~~~~~f~--~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~l~l~-n~l~ 322 (379) T 4h09_A 272 AKVKTVPYLLCS--GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP-TALK 322 (379) T ss_dssp CCCSEECTTTTT--TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC-TTCC T ss_pred ccccchhhhhcc--CCCCCcEEeeCCCCceEEChhhccCCCCCcEEEcC-cccc Confidence 333333221111 4556666666 4555555422 3445566666666 4443No 254>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Probab=98.95 E-value=3.2e-10 Score=116.19 Aligned_cols=179 Identities=9% Similarity=-0.000 Sum_probs=113.0 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCC-CCCCCCccCc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISAN-RIQDLGELNY 220 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N-~L~~l~~l~~ 220 (559) .+.+++.|.+.+|.+.. ..+...+..+++|++|+|++|.++.... ..+..+++|+.|+|++| .++....... T Consensus 91 ~~~~L~~L~l~~~~~~~-----~~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 163 (336) T 2ast_B 91 SPFRVQHMDLSNSVIEV-----STLHGILSQCSKLQNLSLEGLRLSDPIV--NTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336) T ss_dssp CCBCCCEEECTTCEECH-----HHHHHHHTTBCCCSEEECTTCBCCHHHH--HHHTTCTTCSEEECTTCBSCCHHHHHHH T ss_pred ccCCccEEEeeCCeeCH-----HHHHHHHhhCCCCCEEEecCCcCChHHH--HHHhcCCCCCEEeCCCCCCcCHHHHHHH Confidence 45577778877776542 1234455788999999999998875221 12367899999999998 5663221112 Q ss_pred cCCC-CccEEEeecC-cCCCcchhHHhc-cCCCccEEeCCCCc--CCC---chhccCCCCcccccCCCCCCccchhhhhh Q FBpp0305286 221 INKL-SCKTIFLAGN-GLAKLSVDVIRK-MLPQLKNVHGCVQL--GES---TEAVDNIPKSQQLQGGGTNGLKFCQDFIS 292 (559) Q Consensus 221 l~~l-~L~~L~L~~N-~l~~~~~~~il~-~lp~L~~Ldl~~N~--~~~---~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~ 292 (559) +.++ +|++|+|++| .+++......+. .+++|++|++++|. ... ...+..+++|+.|+++++.. ++ T Consensus 164 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-------~~ 236 (336) T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM-------LK 236 (336) T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT-------CC T ss_pred HHhCCCCCEEeCCCCcccCHHHHHHHHHhcCCCCCEEEccCCcCcCCHHHHHHHHHhCCCCCEEECCCCCC-------cC Confidence 4567 8999999999 787643332244 56899999998883 332 12356788899994444431 22 Q ss_pred h-hcccccCcccccccccccc-cc-ceeeeec-CCcCccccceeecCCc Q FBpp0305286 293 S-YYTFFDDTEERFKLKKYYD-DQ-AMFSLSV-PVQLNYVYGYKLYNRN 337 (559) Q Consensus 293 ~-~~~~~d~~~~l~~L~~L~l-~N-~l~sl~~-~~~~~~~L~~L~ls~N 337 (559) . .+..+. ++++|+.|++ .| .+..... ....++.|++|++++| T Consensus 237 ~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336) T 2ast_B 237 NDCFQEFF---QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336) T ss_dssp GGGGGGGG---GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS T ss_pred HHHHHHHh---cCCCCCEEeCCCCCCCCHHHHHHHhcCCCccEEeccCc Confidence 1 122222 5788999999 55 2322211 1245788999999885No 255>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} SCOP: c.10.2.0 Probab=98.95 E-value=3.6e-09 Score=98.82 Aligned_cols=102 Identities=21% Similarity=0.136 Sum_probs=69.1 Q ss_pred ccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEE Q FBpp0305286 176 VTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNV 254 (559) Q Consensus 176 L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~L 254 (559) -+.|++++|.|+.+|.. + .++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.|+++++.. +..+++|+.| T Consensus 14 ~~~l~~~~~~l~~lp~~--~---~~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L 86 (174) T 2r9u_A 14 QTLVNCQNIRLASVPAG--I---PTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGV-FDKLTQLTQL 86 (174) T ss_dssp SSEEECCSSCCSSCCSC--C---CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEE T ss_pred CCEEEcCCCCccccCCC--C---CCCCcEEEeCCCccCcCCH-hHcCCCcCCCEEECCCCcCCcCChhH-hcCCCCCCEE Confidence 35677777777777653 1 2677777777777777642 356777 7777777777777766654 6777777777 Q ss_pred eCCCCcCCC--chhccCCCCcccccCCCCCCc Q FBpp0305286 255 HGCVQLGES--TEAVDNIPKSQQLQGGGTNGL 284 (559) Q Consensus 255 dl~~N~~~~--~~~~~~lp~Lk~L~l~~~~l~ 284 (559) ++++|.+.. ...+..+++|+.|++++|.+. T Consensus 87 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 118 (174) T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174) T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC T ss_pred ECCCCcCCeeCHHHHhCccCCCEEEecCCCCc Confidence 777775543 234667777777755555443No 256>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Probab=98.95 E-value=5.7e-10 Score=114.28 Aligned_cols=181 Identities=16% Similarity=0.032 Sum_probs=106.5 Q ss_pred CCCCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCCC-CCCC--C Q FBpp0305286 140 LSRFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISAN-RIQD--L 215 (559) Q Consensus 140 Ls~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N-~L~~--l 215 (559) +..+++|+.|.+.+|.+.. .....+..+++|++|+|++| .++. .....++..+++|+.|+|++| +++. + T Consensus 114 ~~~~~~L~~L~L~~~~~~~------~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 186 (336) T 2ast_B 114 LSQCSKLQNLSLEGLRLSD------PIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336) T ss_dssp HTTBCCCSEEECTTCBCCH------HHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTCCHHHH T ss_pred HhhCCCCCEEEecCCcCCh------HHHHHHhcCCCCCEEeCCCCCCcCH-HHHHHHHHhCCCCCEEeCCCCcccCHHHH Confidence 3457778888887776552 11122356888888888887 4543 222223467788888888888 7775 3 Q ss_pred CccCccC-CC-CccEEEeecC--cCCCcchhHHhccCCCccEEeCCCCcC-C--CchhccCCCCcccccCCCCCCccchh Q FBpp0305286 216 GELNYIN-KL-SCKTIFLAGN--GLAKLSVDVIRKMLPQLKNVHGCVQLG-E--STEAVDNIPKSQQLQGGGTNGLKFCQ 288 (559) Q Consensus 216 ~~l~~l~-~l-~L~~L~L~~N--~l~~~~~~~il~~lp~L~~Ldl~~N~~-~--~~~~~~~lp~Lk~L~l~~~~l~~L~~ 288 (559) +. .+. .+ +|++|+|++| .+++.....++..+|+|++|++++|.. . ....+..+++|+.|.++++. T Consensus 187 ~~--~~~~~~~~L~~L~l~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------ 258 (336) T 2ast_B 187 QV--AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY------ 258 (336) T ss_dssp HH--HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT------ T ss_pred HH--HHHhcCCCCCEEEccCCcCcCCHHHHHHHHHhCCCCCEEECCCCCCcCHHHHHHHhcCCCCCEEeCCCCC------ Confidence 32 233 34 7888888888 566533333467888888888888753 2 23456778888888444431 Q ss_pred hhhhhh-cccccCccccccccccccccceeeeecCCcCccccceeecCCcccc Q FBpp0305286 289 DFISSY-YTFFDDTEERFKLKKYYDDQAMFSLSVPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 289 n~L~~~-~~~~d~~~~l~~L~~L~l~N~l~sl~~~~~~~~~L~~L~ls~N~i~ 340 (559) .+... ...+. .+++|+.|++.+++..-.++ .....+..|+++.|.++ T Consensus 259 -~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~-~l~~~l~~L~l~~~~~~ 306 (336) T 2ast_B 259 -DIIPETLLELG---EIPTLKTLQVFGIVPDGTLQ-LLKEALPHLQINCSHFT 306 (336) T ss_dssp -TCCGGGGGGGG---GCTTCCEEECTTSSCTTCHH-HHHHHSTTSEESCCCSC T ss_pred -CCCHHHHHHHh---cCCCccEEeccCcccHHHHH-HHHhhCcceEeeccccC Confidence 12111 01111 47788888885433221111 11144555667777665No 257>4per_A Ribonuclease inhibitor; leucine-rich repeat, protein-protein complex, hydrolase-HYDR inhibitor complex; 1.92A {Gallus gallus} Probab=98.92 E-value=2.9e-10 Score=121.43 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=8.5 Q ss_pred ccCCCccEEEccCCcCC Q FBpp0305286 171 HLFPHVTSLVLSNNYLC 187 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~ 187 (559) ..+++|++|+|++|+|+ T Consensus 52 ~~~~~L~~L~Ls~n~l~ 68 (460) T 4per_A 52 HTNPSLKELKLNNNELG 68 (460) T ss_dssp HHCTTCCEEECTTCCCH T ss_pred hcCCCcCEEECCCCCCc Confidence 34455555555555544No 258>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Probab=98.92 E-value=1.4e-11 Score=117.37 Aligned_cols=132 Identities=11% Similarity=0.125 Sum_probs=102.7 Q ss_pred hccCCCccEEEccCCcCCCC-cC---ccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHH Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCSL-KA---FAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVI 244 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~l-~~---~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~i 244 (559) +..+++|+.|+|++|.++.. +. +...+..+++|+.|+|++|.|+.++ .+.++ +|++|+|++|.+...+.. T Consensus 14 ~~~~~~l~~L~l~~~~l~~~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~l~~~-- 88 (198) T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIKKIENL-- 88 (198) T ss_dssp CCCCCCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC---CHHHHTTCCEEEEEEEEECSCSSH-- T ss_pred HhccCcceeeeeeeccccCccccHhHHHHHHhcCCCCCEEECCCCcccccc---cccCCCCccEEECCCCcceeccch-- Confidence 37889999999999999864 22 1112478999999999999999874 57788 999999999999987642 Q ss_pred hccCCCccEEeCCCCcCCCchhccCCCCcccccCCCCCCccchhhhhhhhcc--cccCcccccccccccc-cccee Q FBpp0305286 245 RKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYT--FFDDTEERFKLKKYYD-DQAMF 317 (559) Q Consensus 245 l~~lp~L~~Ldl~~N~~~~~~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~--~~d~~~~l~~L~~L~l-~N~l~ 317 (559) +..+++|+.|++++|.+...+.+..+++|+.| ++++|.+..++. .+. .+++|+.|++ .|.+. T Consensus 89 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L--------~L~~n~i~~~~~~~~l~---~l~~L~~L~l~~n~~~ 153 (198) T 1ds9_A 89 DAVADTLEELWISYNQIASLSGIEKLVNLRVL--------YMSNNKITNWGEIDKLA---ALDKLEDLLLAGNPLY 153 (198) T ss_dssp HHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE--------EESEEECCCHHHHHHHT---TTTTCSEEEECSCHHH T ss_pred hcccCcCCEEECcCCccccCcccccCCCCCEE--------ECcCCccCCcHhHHHHh---cCCCCCEEEecCCccc Confidence 77889999999999977766667788899999 666666665433 222 5788888888 66554No 259>4x2h_B Putative uncharacterized protein; mRNA nuclear export, TREX-2, transcription; 1.80A {Chaetomium thermophilum} PDB: 4x2o_B Probab=98.91 E-value=1.3e-09 Score=102.07 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=83.4 Q ss_pred cchhhhhhhhcccccCccccccccccccccce-eeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHHHHhh Q FBpp0305286 285 KFCQDFISSYYTFFDDTEERFKLKKYYDDQAM-FSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALS 363 (559) Q Consensus 285 ~L~~n~L~~~~~~~d~~~~l~~L~~L~l~N~l-~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~~~L~ 363 (559) ....+|++.||..|+ ++..|..+|.+++- . .... ..+ ..+..++|.+ .|..+|...|. T Consensus 6 ~ia~~FV~~YY~~~d---~R~~L~~fY~~~s~~y-~~~~--~~p--S~lt~nG~~v-------------~G~~~I~~~l~ 64 (183) T 4x2h_B 6 YAAKSFVEWYYRQIN---ENKPVASGYVNNNATY-TKAG--HPP--ADITINGRVV-------------ATPEEWDTMLK 64 (183) T ss_dssp HHHHHHHHHHHHHHH---TTCCCGGGBGGGCHHH-HHHT--CCC--CEEEETTEEE-------------SCHHHHHHHHH T ss_pred HHHHHHHHHHHHHhC---CHHHHHHhhhcccccc-cccC--Ccc--ceEEECCCEe-------------cCHHHHHHHHH Confidence 567789999999998 57889999995520 0 0000 000 0122233322 34555666666 Q ss_pred c------------C----CCCCcCCCceeeeeEeecC------------------C---EEEEEEcCceEEcCCCC--C- Q FBpp0305286 364 R------------L----PLMHTDLENVGLDIQVFTS------------------S---LRIFTLTGYFKEISSDT--L- 403 (559) Q Consensus 364 ~------------L----P~t~h~lssl~vD~~~~~~------------------~---ll~itV~G~f~e~~~~~--~- 403 (559) . | |.+.|++. .+||++..+ . .++|+|+|.++..+.+. . T Consensus 65 ~lr~~~~~~~~~~lp~~~p~~~h~I~--t~D~qpi~~~~~~~~p~~~~d~~~~~~g~~~~ilV~V~G~v~~~~~~~~~~~ 142 (183) T 4x2h_B 65 EQRAQHNTSSSSTLPIGRKPVRYDVD--CFDVHVINADYRFAAPQRMIEQHAPTDGVRMMMALTVSGSVYFGASPRSTDD 142 (183) T ss_dssp HHTC-------CCSCTTCEEEEEEEE--EEEEEEEETTCCTTCCHHHHHHCCTTSSCSCEEEEEEEEEEEEEECTTCSSS T ss_pred hhhccccccccccccccCCceEEEEe--eEeeeecCccccccccccccccccccCCCcceEEEEEEEEEEECCccccccc Confidence 6 3 67888776 569998763 2 79999999997654321 1 Q ss_pred --CCcceeeeEEEEecCC----------CcEEEEccceEE Q FBpp0305286 404 --EPRRFQRTFVLQTSNS----------PGWLITNDMLCI 431 (559) Q Consensus 404 --~~r~F~RtFvl~p~~n----------~~~~I~ND~l~i 431 (559) ..|.|+++|+|+|.++ ++|+|.||+||+ T Consensus 143 ~~~~r~FsqtFvL~P~~~~~~~~~~~~~~~~~I~sD~FRl 182 (183) T 4x2h_B 143 YVIKQHFNDVFILVPNWDVLEKPGARSGRKYLIASHKYRA 182 (183) T ss_dssp CSEEEEEEEEEEEEECTTTTTCTTCCSSCSEEEEEEEEEE T ss_pred CCCCcceeEEEEEeeCCccccccccCCCCcEEEEeeeeec Confidence 5899999999999863 579999999986No 260>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Probab=98.88 E-value=1.2e-10 Score=122.19 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=114.4 Q ss_pred ccCCCccEEEccCCcCCCCcCc--ccccc-CCCCCCEEeCCCCCCCCCCccCccC-CC-CccEEEeecCcCCCcchhHH- Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAF--AGNSQ-SFASLERLDISANRIQDLGELNYIN-KL-SCKTIFLAGNGLAKLSVDVI- 244 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~--~~l~~-~l~~L~~L~Ls~N~L~~l~~l~~l~-~l-~L~~L~L~~N~l~~~~~~~i- 244 (559) +.+++|++|+|++|+|+..... ..++. ..++|+.|+|++|.|+... ...+. .+ +|++|+|++|.+++.....+ T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~l~~L~~L~Ls~n~l~~~~~~~l~ 147 (372) T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372) T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHH T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhcCCCCCcEEEeeccCCCHHH-HHHHHHHHHHhCHhhcCCCCCCHHHHHHHH Confidence 5678999999999999885432 11112 2379999999999998543 22444 57 99999999999987655441 Q ss_pred ---hccCCCccEEeCCCCcCCCc------hhccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-cc Q FBpp0305286 245 ---RKMLPQLKNVHGCVQLGEST------EAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQ 314 (559) Q Consensus 245 ---l~~lp~L~~Ldl~~N~~~~~------~~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N 314 (559) ...+++|+.|++++|.+... ..+..+++|+.|++++|.+.+.... .+...+. ..++|+.|++ .| T Consensus 148 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~l~~~~~~---~l~~~l~---~~~~L~~L~Ls~n 221 (372) T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---LLAAQLD---RNRQLQELNVAYN 221 (372) T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---HHHHHGG---GCSCCCEEECCSS T ss_pred HHHhccCCCccEEECCCCCCcHHHHHHHHHHHhhCCCccEEeccCCCCChHHHH---HHHHHhc---cCCccCeEECCCC Confidence 26789999999999976432 2366789999996666644433222 2233332 4679999999 77 Q ss_pred ceeeeecC-----CcCccccceeecCCcccc Q FBpp0305286 315 AMFSLSVP-----VQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 315 ~l~sl~~~-----~~~~~~L~~L~ls~N~i~ 340 (559) .+...... ...++.|++|++++|.+. T Consensus 222 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 252 (372) T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNELS 252 (372) T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC T ss_pred CCCHHHHHHHHHHHHhCCCcCEEeccCCCCC Confidence 66543221 125678999999999987No 261>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} SCOP: c.10.2.0 Probab=98.87 E-value=6.9e-09 Score=96.92 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=72.6 Q ss_pred CCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCcc Q FBpp0305286 174 PHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLK 252 (559) Q Consensus 174 ~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~ 252 (559) ++|++|+|++|+|+.+++. .+..+++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.|.++++.. +..+++|+ T Consensus 33 ~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~ 108 (174) T 2r9u_A 33 TDKQRLWLNNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNHLKSIPRGA-FDNLKSLT 108 (174) T ss_dssp TTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCS T ss_pred CCCcEEEeCCCccCcCCHh--HcCCCcCCCEEECCCCcCCcCCh-hHhcCCCCCCEEECCCCcCCeeCHHH-HhCccCCC Confidence 6899999999999998543 24789999999999999998874 467888 9999999999999887765 88899999 Q ss_pred EEeCCCCcCC Q FBpp0305286 253 NVHGCVQLGE 262 (559) Q Consensus 253 ~Ldl~~N~~~ 262 (559) .|++++|... T Consensus 109 ~L~l~~N~~~ 118 (174) T 2r9u_A 109 HIYLYNNPWD 118 (174) T ss_dssp EEECCSSCBC T ss_pred EEEecCCCCc Confidence 9999999654No 262>4kxf_K NLR family CARD domain-containing protein 4; auto-inhibition, MUTI-domain, innate immunity, phosphorylati binding, immune system; HET: SEP ADP; 3.20A {Mus musculus} Probab=98.86 E-value=6.8e-10 Score=131.12 Aligned_cols=190 Identities=10% Similarity=-0.016 Sum_probs=98.6 Q ss_pred CCCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccc----cccCCCCCCEEeCCCCCCCC--- Q FBpp0305286 142 RFHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAG----NSQSFASLERLDISANRIQD--- 214 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~----l~~~l~~L~~L~Ls~N~L~~--- 214 (559) ++.+|+.|.+.+|.++... ...+.....++++|+.|+|++|.+... +... +....++|+.|+|++|.++. T Consensus 761 ~l~~L~~L~L~~~~l~~~~--~~~l~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~~l~~~~~~L~~L~L~~~~l~~~~~ 837 (1024) T 4kxf_K 761 NLKNLERLILDDIRMNEED--AKNLAEGLRSLKKMRLLHLTHLSDIGE-GMDYIVKSLSEESCDLQEMKLVACCLTANSV 837 (1024) T ss_dssp TCSSCCEEEEEEECCCHHH--HHHHHHHHTTCCCCSEEEEESCCSCTT-HHHHHHHHHHSSCCCCCEEEEESSCCCHHHH T ss_pred hccCCCEEeccCCCCChHH--HHHHHHHHhcCCCceEEEccCCCCccc-cHHHHHHHHHhcCCCceEEEEeCCCCCHHHH Confidence 3455555555555543210 011222235666777777777666541 1111 11224567777777776664 Q ss_pred --CCccCccCCC-CccEEEeecCcCCCcchhHH------hccCCCccEEeCCCCcCCC------chhccCCCCcccccCC Q FBpp0305286 215 --LGELNYINKL-SCKTIFLAGNGLAKLSVDVI------RKMLPQLKNVHGCVQLGES------TEAVDNIPKSQQLQGG 279 (559) Q Consensus 215 --l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~i------l~~lp~L~~Ldl~~N~~~~------~~~~~~lp~Lk~L~l~ 279 (559) ++. .+..+ +|++|+|++|.+.......+ ...+++|+.|++++|.+.. ...+..+++|+.|.++ T Consensus 838 ~~l~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~ 915 (1024) T 4kxf_K 838 KVLAQ--NLHNLIKLSILDISENYLEKDGNEALQELIGRLGVLGELTTLMLPWCWDVHTSLPKLLKQLEGTPGLAKLGLK 915 (1024) T ss_dssp HHHHH--HGGGCCSCCEEECCSCBCCSSHHHHHHHHHHTGGGCSSCCEEEECBCTTGGGGHHHHHHHGGGCTTCCEEEEE T ss_pred HHHHH--HHhhccccCEEeccCCccCcccHHHHHHHHHhcCCcCCceEEECCCCCcccHHHHHHHHHHhcCCCccEEeCC Confidence 222 35556 67777777777665433321 1223677777777764432 2235566777777444 Q ss_pred CCCCccchhhhhhhhcccccCcccccccccccc-ccceeeee-----cCCcCccccceeecCCcccc Q FBpp0305286 280 GTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLS-----VPVQLNYVYGYKLYNRNQKR 340 (559) Q Consensus 280 ~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~-----~~~~~~~~L~~L~ls~N~i~ 340 (559) +|.+.+..-..+..... .. .+++|+.|++ .|.+.... .....++.|++|++++|.+. T Consensus 916 ~n~l~~~~~~~l~~~~~--~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~l~~L~~L~L~~n~l~ 978 (1024) T 4kxf_K 916 NWRLRDEEIKSLGEFLE--MN--PLRDLQQLDLAGHCVSSDGWLYFMNVFENLKQLVFFDFSTEEFL 978 (1024) T ss_dssp SCCCCHHHHHHHHHHHH--HS--CCSSCCEEEEESCCCCHHHHHHHHHHHTTCTTCCEEECCCSSBC T ss_pred CCcCChHHHHHHHHHHH--hC--cccccCEEECcCCCcCHHHHHHHHHHHhcCCCccEEeCCCCccc Confidence 44333222212211110 11 3467888888 66555532 12356678888888888775No 263>4kxf_K NLR family CARD domain-containing protein 4; auto-inhibition, MUTI-domain, innate immunity, phosphorylati binding, immune system; HET: SEP ADP; 3.20A {Mus musculus} Probab=98.86 E-value=1.7e-09 Score=127.77 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=46.9 Q ss_pred ccCCCccEEEccCCcCCC-CcCccccccCCCCCCEEeCCCCCCCC-----CCccCccCCC-CccEEEeecCcCCCcchhH Q FBpp0305286 171 HLFPHVTSLVLSNNYLCS-LKAFAGNSQSFASLERLDISANRIQD-----LGELNYINKL-SCKTIFLAGNGLAKLSVDV 243 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~-l~~~~~l~~~l~~L~~L~Ls~N~L~~-----l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~ 243 (559) .++++|++|+|++|.+.. ++. .+.++++|+.|+|++|.++. ++. .+..+ +|++|+|++|.+.+..... T Consensus 736 ~~l~~L~~L~L~~~~~~~~l~~---~l~~l~~L~~L~L~~~~l~~~~~~~l~~--~l~~l~~L~~L~l~~n~~~~~~~~~ 810 (1024) T 4kxf_K 736 TGLQNLSIHRLHTQQLPGGLID---SLGNLKNLERLILDDIRMNEEDAKNLAE--GLRSLKKMRLLHLTHLSDIGEGMDY 810 (1024) T ss_dssp TTCCEEEEEEECSCCCTTSTTT---TCTTCSSCCEEEEEEECCCHHHHHHHHH--HHTTCCCCSEEEEESCCSCTTHHHH T ss_pred hCCCCcceeecccCchhHHHHH---HHhhccCCCEEeccCCCCChHHHHHHHH--HHhcCCCceEEEccCCCCccccHHH Confidence 455555555555555522 222 13455555555555555521 221 23344 5555555555544422211 Q ss_pred H----hccCCCccEEeCCCCcCCC------chhccCCCCcccccCCCCCC Q FBpp0305286 244 I----RKMLPQLKNVHGCVQLGES------TEAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 244 i----l~~lp~L~~Ldl~~N~~~~------~~~~~~lp~Lk~L~l~~~~l 283 (559) + ....++|+.|++++|.... +..+..+++|+.|++++|.+ T Consensus 811 l~~~l~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~l~~L~~L~L~~n~l 860 (1024) T 4kxf_K 811 IVKSLSEESCDLQEMKLVACCLTANSVKVLAQNLHNLIKLSILDISENYL 860 (1024) T ss_dssp HHHHHHSSCCCCCEEEEESSCCCHHHHHHHHHHGGGCCSCCEEECCSCBC T ss_pred HHHHHHhcCCCceEEEEeCCCCCHHHHHHHHHHHhhccccCEEeccCCcc Confidence 1 1113445555555543322 12234455555554444433No 264>4wp6_A MRNA export protein; LRR domain nuclear export mRNA binding, transport protein; 1.70A {Chaetomium thermophilum} Probab=98.84 E-value=2.8e-09 Score=99.06 Aligned_cols=145 Identities=20% Similarity=0.285 Sum_probs=90.4 Q ss_pred CchhHHhHHHHHhcccccccccccCC---CCCCCccccccccCCcchhhhHHHHHHhh---c----cCCCccEEEccCCc Q FBpp0305286 116 TDEFTTAIQEALRSRYEVDSRTLDLS---RFHASPELSLHFCPLHMVKLLETVLVLSN---H----LFPHVTSLVLSNNY 185 (559) Q Consensus 116 ~~~~i~~L~~~l~~~y~~~~~~LdLs---~l~~L~~L~l~~~~l~~~~~~~~~l~~i~---~----~l~~L~~L~Ls~N~ 185 (559) ..+.++.++..+...|....+..+++ .+.+|+.|.+.+|.+..+..++....... . .+++|+.|+|++|+ T Consensus 16 ~~~~~~~l~~~L~~l~l~~n~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~n~l~~~~~~~~~L~~L~l~~n~ 95 (183) T 4wp6_A 16 AQETKQKLTSCLARRYNAEQKLLDLSALGTDETLSSLGSFNNQSLAEKSFKALMHLVSNEYKDPEQKNEAIQAVSLARND 95 (183) T ss_dssp ---CHHHHHHHHHHHEETTTTEEECTTGGGC-------------CCHHHHHHHHHHHHHHCSSHHHHHHHCCEEECCSSC T ss_pred CHHHHHHHHHHHHHHhCCCCCcccchhccCCcchhhccccccchhhhhhhhHHHHHHhCCCCccccccccccEEECCCCc Confidence 34466677777777776767766665 45556667777776554433332221000 1 25689999999999 Q ss_pred CCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc-CCC-CccEEEeecCcCCCcchh--HHhccCCCccEEeCCCCc Q FBpp0305286 186 LCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI-NKL-SCKTIFLAGNGLAKLSVD--VIRKMLPQLKNVHGCVQL 260 (559) Q Consensus 186 L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l-~~l-~L~~L~L~~N~l~~~~~~--~il~~lp~L~~Ldl~~N~ 260 (559) ++.++.....+..+++|+.|+|++|+|+.++.+..+ .++ +|++|+|++|++...+.. .++..+++|+.|++..+. T Consensus 96 l~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~L~~Ld~~~~~ 174 (183) T 4wp6_A 96 ILDVGQVYSLAVTLPRLRRLDLSGNNLENLSKISKWQQEFRFLEELHLTGNPVTTLPNYATEIKKWFPSLQILDGQQIR 174 (183) T ss_dssp CSCGGGGTTHHHHCTTCCEEECTTSCCCSGGGTGGGTTCCTTCCEEECTTSGGGGSTTHHHHHHHHCTTCCEETTEECS T ss_pred CcccHHHHHHHhhCCCCCEEECCCCcCCCHHHHHHHHhcCCCccEEEccCCcccCchHHHHHHHHHCCcceeeCCccCC Confidence 988866433456789999999999999988754456 677 899999999998876543 236788899999887653No 265>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Probab=98.83 E-value=5.7e-09 Score=115.23 Aligned_cols=117 Identities=20% Similarity=0.169 Sum_probs=96.2 Q ss_pred CCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC Q FBpp0305286 145 ASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL 224 (559) Q Consensus 145 ~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l 224 (559) +|+.|.+.+|.+..+. .+..+++|+.|+|++|.|+.++.. +..+++|+.|+|++|+|+.++ .+..+ T Consensus 442 ~L~~L~l~~n~l~~l~--------~~~~l~~L~~L~l~~n~l~~l~~~---~~~l~~L~~L~l~~n~l~~l~---~~~~l 507 (567) T 1dce_A 442 DVRVLHLAHKDLTVLC--------HLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNALENVD---GVANL 507 (567) T ss_dssp TCSEEECTTSCCSSCC--------CGGGGTTCCEEECCSSCCCCCCGG---GGGCTTCCEEECCSSCCCCCG---GGTTC T ss_pred CccEEECCCCCCCCCC--------ccccCCCCCEEECCCCCCcccchH---hhcCCCCCEEECCCCCCCCCc---ccccC Confidence 7777888877776432 236789999999999999988763 589999999999999999987 47888 Q ss_pred -CccEEEeecCcCCCcch-hHHhccCCCccEEeCCCCcCCCc-----hhccCCCCcccc Q FBpp0305286 225 -SCKTIFLAGNGLAKLSV-DVIRKMLPQLKNVHGCVQLGEST-----EAVDNIPKSQQL 276 (559) Q Consensus 225 -~L~~L~L~~N~l~~~~~-~~il~~lp~L~~Ldl~~N~~~~~-----~~~~~lp~Lk~L 276 (559) +|++|+|++|.+++.+. .. +..+++|+.|++++|.+... ..+..+|+|+.| T Consensus 508 ~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~L~~L 565 (567) T 1dce_A 508 PRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567) T ss_dssp SSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE T ss_pred CCCCEEECCCCCCCCCcChhh-hhcCCCCCEEEccCCcCCCccchHHHHHHhCCCCcEe Confidence 99999999999999876 44 89999999999999965432 234567888777No 266>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Probab=98.79 E-value=6.4e-09 Score=108.83 Aligned_cols=159 Identities=12% Similarity=0.034 Sum_probs=105.7 Q ss_pred hccCCCccEEEccCCcCCC-------CcCccccccCCCCCCEEeCCCC-CCCCCCccCccCCC-CccEEEeecCcCCCcc Q FBpp0305286 170 NHLFPHVTSLVLSNNYLCS-------LKAFAGNSQSFASLERLDISAN-RIQDLGELNYINKL-SCKTIFLAGNGLAKLS 240 (559) Q Consensus 170 ~~~l~~L~~L~Ls~N~L~~-------l~~~~~l~~~l~~L~~L~Ls~N-~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~ 240 (559) ...+++|+.|+|++|.+.. ...+..++..+++|+.|+|++| .+.... ..+ +|++|+|++|.+++.. T Consensus 135 l~~l~~L~~L~L~~~~~~~~~ls~~~~~~l~~~l~~~~~L~~L~Ls~n~~l~~~~-----~~~~~L~~L~L~~n~l~~~~ 209 (362) T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-----KPRPNLKSLEIISGGLPDSV 209 (362) T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-----CBCTTCSEEEEECSBCCHHH T ss_pred hhhCccccEEEecCccccccccccccHHHHHHHHHhCCCcCEEecCCCCCCCccc-----ccCCCCCEEEccCCCCCHHH Confidence 3678999999999988532 2233334578999999999996 555322 244 8999999999998876 Q ss_pred hhHHhc-cCCCccEEeCC--CCcC------CCc-hhcc--CCCCcccccCCCCCCccchhhhhhhhcccccCcccccccc Q FBpp0305286 241 VDVIRK-MLPQLKNVHGC--VQLG------EST-EAVD--NIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLK 308 (559) Q Consensus 241 ~~~il~-~lp~L~~Ldl~--~N~~------~~~-~~~~--~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~ 308 (559) ...+.. .+|+|+.|+++ .|.. ... ..+. .+|+|+.|.+++|.+.+.... .+.... .+++|+ T Consensus 210 ~~~l~~~~~~~L~~L~Ls~~~n~~~~~~~~~~l~~~l~~~~~~~L~~L~L~~n~l~~~~~~---~l~~~~----~~~~L~ 282 (362) T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE---MFLESD----ILPQLE 282 (362) T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH---HHHHCS----SGGGCS T ss_pred HHHHHhccCCCCcEEEEeccccccccchhHHHHHHHhccccCCCCCEEECCCCCCChHHHH---HHHhcc----cCCCcC Confidence 666333 89999999995 3322 111 2223 788999995555433322211 111111 468899 Q ss_pred cccc-ccceeeeecCC-----cCccccceeecCCcccc Q FBpp0305286 309 KYYD-DQAMFSLSVPV-----QLNYVYGYKLYNRNQKR 340 (559) Q Consensus 309 ~L~l-~N~l~sl~~~~-----~~~~~L~~L~ls~N~i~ 340 (559) .|++ .|.+....... ..++.|+.|++++|.++ T Consensus 283 ~LdLs~N~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 320 (362) T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362) T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC T ss_pred EEECCCCCCcHHHHHHHHHhcccCCCCCEEECcCCcCC Confidence 9999 66554432111 23489999999999887No 267>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A Probab=98.75 E-value=1.7e-08 Score=95.33 Aligned_cols=144 Identities=10% Similarity=0.061 Sum_probs=101.6 Q ss_pred ccchhhhhhhhcccccCccc---------ccccccc--cc-c---cceeeeecCCcCccccceeecCCccccCCChhhhh Q FBpp0305286 284 LKFCQDFISSYYTFFDDTEE---------RFKLKKY--YD-D---QAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQN 348 (559) Q Consensus 284 ~~L~~n~L~~~~~~~d~~~~---------l~~L~~L--~l-~---N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl 348 (559) .....+|++.|+..||. + +..+..| |. + ++..++ ++|.+.. T Consensus 26 ~qiae~FVk~YY~~fD~--~r~~~~~~~~R~~l~~l~lY~~d~~~~S~lt~---------------NG~~v~~------- 81 (201) T 1q42_A 26 TQQLEPFLKRFLASLDL--LYTQPTSQPFPNVESYATQLGSNLKRSSAIIV---------------NGQPIIP------- 81 (201) T ss_dssp GGTHHHHHHHHHHHHSC--CCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEE---------------TTEECCC------- T ss_pred HHHHHHHHHHHHHHhcC--CccccccccchhhhhhhhhcccCCCCceEEEE---------------eCeEecc------- Confidence 36788999999999997 5 4434444 66 3 444444 3333321 Q ss_pred hhhhhhhHHHHHHhhcCCCCCcCCCceeeeeEeecC-CEEEEEEcCceEEcCCCCCCCcceeeeEEEEecCC-------- Q FBpp0305286 349 AKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTS-SLRIFTLTGYFKEISSDTLEPRRFQRTFVLQTSNS-------- 419 (559) Q Consensus 349 ~~L~~g~~~i~~~L~~LP~t~h~lssl~vD~~~~~~-~ll~itV~G~f~e~~~~~~~~r~F~RtFvl~p~~n-------- 419 (559) +++..|..+|...|.+||.++|.+. .+||++..+ ..++|+|+|.++..+. ..+.|+++|+|+|.++ T Consensus 82 ~r~~~G~~~I~ekl~sLP~t~H~I~--t~DcQPipg~g~iLI~VsG~Vkfde~---~~~~FsQtFvL~p~~~~~~~~~~~ 156 (201) T 1q42_A 82 SPQEDCKLQFQKKWLQTPLSSHQLT--SYDGHLIPGTGTFVVHFSAKVRFDQS---GRNRLGESADLFQENNSIVSKTNQ 156 (201) T ss_dssp CSSCCHHHHHHHHHHTSCCEEEEEE--EEEEEEETTTTEEEEEEEEEEEEBCS---SCCTTSCCC--------------- T ss_pred cccccCHHHHHHHHHhCCCeEeEEe--eEeeeEcCCCCeEEEEEEEEEEECCC---CCcccceEEEEecCCCccccccCC Confidence 2456899999999999999999988 569999985 5799999999987654 6999999999998754 Q ss_pred ----CcEEEEccceEEeeCCCCCcceEEeccccccccCCCC Q FBpp0305286 420 ----PGWLITNDMLCITSTMPDPKKTIKFKPETNMINTDPS 456 (559) Q Consensus 420 ----~~~~I~ND~l~i~~~~~~~~~~i~~~~~~~~~~~~p~ 456 (559) |.|+.++=++.+-+.--+.-+.|..+.|+.-.-++-. T Consensus 157 rp~wgs~fg~~~~lv~d~~~~~~~~~i~~~ny~~~y~p~ds 197 (201) T 1q42_A 157 RPIWGSWFGVDVNLVVDENVMQDGEIINSMDYRFTYVPNDS 197 (201) T ss_dssp CCCBCCCEEEEEEEEEESCCSSCSSCEEEEEEEEEECCCC- T ss_pred CCCcccceeEEEEEEEecccccCCCeEEEeeeEEEEcCccc Confidence 4588888777776665444479999999988865543No 268>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Probab=98.68 E-value=3e-08 Score=102.60 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=55.2 Q ss_pred ccCCCccEEEccC-CcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccC Q FBpp0305286 171 HLFPHVTSLVLSN-NYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKML 248 (559) Q Consensus 171 ~~l~~L~~L~Ls~-N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~l 248 (559) ..+++|+.|+|++ |+|+.++.. .|.++++|+.|+|++|+|+.++. ..|.++ +|++|+|++|.|+.++... +..+ T Consensus 28 ~~l~~L~~L~l~~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~-~~f~~l~~L~~L~l~~N~l~~l~~~~-~~~~ 103 (347) T 2ifg_A 28 PGAENLTELYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKT-VQGL 103 (347) T ss_dssp CSCSCCSEEECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTT-TCSC T ss_pred CCCCCccEEECCCCCCccEeCHH--HhhCccCCCEEECCCCccCccCH-HHhcCCCCCCEEECCCCCCceeCHHH-cCCC Confidence 4566677777777 677776543 24667777777777777776653 356666 6777777777776666543 4444 Q ss_pred CCccEEeCCCCcC Q FBpp0305286 249 PQLKNVHGCVQLG 261 (559) Q Consensus 249 p~L~~Ldl~~N~~ 261 (559) +|+.|++++|.. T Consensus 104 -~L~~l~l~~N~~ 115 (347) T 2ifg_A 104 -SLQELVLSGNPL 115 (347) T ss_dssp -CCCEEECCSSCC T ss_pred -ccceEEeeCCce Confidence 566777666643No 269>4im6_A Nacht, LRR and PYD domains-containing protein 1; LRR domain, ligand recognition, muramyl dipeptide, structura; 1.65A {Homo sapiens} Probab=98.66 E-value=7.8e-09 Score=98.62 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=58.2 Q ss_pred CccEEEccCCcCCCCc--CccccccCCCCCCEEeCCCCCCCCCCc--c-CccCC-C-CccEEEeecCcCCCcchh---HH Q FBpp0305286 175 HVTSLVLSNNYLCSLK--AFAGNSQSFASLERLDISANRIQDLGE--L-NYINK-L-SCKTIFLAGNGLAKLSVD---VI 244 (559) Q Consensus 175 ~L~~L~Ls~N~L~~l~--~~~~l~~~l~~L~~L~Ls~N~L~~l~~--l-~~l~~-l-~L~~L~L~~N~l~~~~~~---~i 244 (559) +|++|+|++|+|+... .+...+..+++|+.|+|++|+|+.... + ..+.. . +|++|+|++|.++..... .. T Consensus 54 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 133 (206) T 4im6_A 54 LLETLRLAGCGLTAEDCKDLAFGLRANQTLTELDLSFNVLTDAGAKHLCQRLRQPSCKLQRLQLVSCGLTSDCCQDLASV 133 (206) T ss_dssp CCSEEECTTSCCCHHHHHHHHHHHHSCSSCCEEECCSSCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH T ss_pred cceEEECCCCCCCHHHHHHHHHHHHhCCcccEEeCcCCccCchHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH Confidence 6777777777766521 011123556677777777777664321 0 01122 2 677777777777653211 12 Q ss_pred hccCCCccEEeCCCCcCCCch------hccCCC-CcccccCCCCCCc Q FBpp0305286 245 RKMLPQLKNVHGCVQLGESTE------AVDNIP-KSQQLQGGGTNGL 284 (559) Q Consensus 245 l~~lp~L~~Ldl~~N~~~~~~------~~~~lp-~Lk~L~l~~~~l~ 284 (559) +..+++|+.|++++|.+.... .+...+ +|+.|++++|.+. T Consensus 134 l~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 180 (206) T 4im6_A 134 LSASPSLKELDLQQNNLDDVGVRLLCEGLRHPACKLIRLGLDQTTLS 180 (206) T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECCCTTSC T ss_pred HhhCCCCCEEECCCCcCCcHHHHHHHHHHhcCCceeEEEeccCCccc Confidence 556677777777777543211 122222 6667755544443No 270>4im6_A Nacht, LRR and PYD domains-containing protein 1; LRR domain, ligand recognition, muramyl dipeptide, structura; 1.65A {Homo sapiens} Probab=98.66 E-value=7.3e-09 Score=98.81 Aligned_cols=112 Identities=14% Similarity=0.051 Sum_probs=75.8 Q ss_pred hhccCCCccEEEccCCcCCCCc--CccccccCCC-CCCEEeCCCCCCCCC-----CccCccCCC-CccEEEeecCcCCCc Q FBpp0305286 169 SNHLFPHVTSLVLSNNYLCSLK--AFAGNSQSFA-SLERLDISANRIQDL-----GELNYINKL-SCKTIFLAGNGLAKL 239 (559) Q Consensus 169 i~~~l~~L~~L~Ls~N~L~~l~--~~~~l~~~l~-~L~~L~Ls~N~L~~l-----~~l~~l~~l-~L~~L~L~~N~l~~~ 239 (559) .+..+++|++|+|++|.|+... .+...+.... +|+.|+|++|+|+.. +. .+..+ +|++|+|++|++... T Consensus 19 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~ 96 (206) T 4im6_A 19 VLKVTRNLKELDLSGNSLSHSAVKSLCKTLRRPRCLLETLRLAGCGLTAEDCKDLAF--GLRANQTLTELDLSFNVLTDA 96 (206) T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHSTTCCCSEEECTTSCCCHHHHHHHHH--HHHSCSSCCEEECCSSCCHHH T ss_pred HHhhCCCCCEEEccCCcCChHHHHHHHHHHccCCCcceEEECCCCCCCHHHHHHHHH--HHHhCCcccEEeCcCCccCch Confidence 4478899999999999998632 1111123333 899999999999863 32 45667 899999999999875 Q ss_pred chhHH---hccC-CCccEEeCCCCcCCCc------hhccCCCCcccccCCCCC Q FBpp0305286 240 SVDVI---RKML-PQLKNVHGCVQLGEST------EAVDNIPKSQQLQGGGTN 282 (559) Q Consensus 240 ~~~~i---l~~l-p~L~~Ldl~~N~~~~~------~~~~~lp~Lk~L~l~~~~ 282 (559) ....+ +... ++|++|++++|.+... ..+..+++|+.|++++|. T Consensus 97 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~ 149 (206) T 4im6_A 97 GAKHLCQRLRQPSCKLQRLQLVSCGLTSDCCQDLASVLSASPSLKELDLQQNN 149 (206) T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCCCEEECCCCc Confidence 44332 2222 3899999999866542 234567778888444443No 271>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Probab=98.62 E-value=9.5e-08 Score=98.83 Aligned_cols=99 Identities=21% Similarity=0.223 Sum_probs=81.3 Q ss_pred EEcc-CCcCCCCcCccccccCCCCCCEEeCCC-CCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEe Q FBpp0305286 179 LVLS-NNYLCSLKAFAGNSQSFASLERLDISA-NRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVH 255 (559) Q Consensus 179 L~Ls-~N~L~~l~~~~~l~~~l~~L~~L~Ls~-N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ld 255 (559) ++-+ .|+|+.+|.+ ..+.+|+.|+|++ |+|+.++. ..|.++ +|++|+|++|.|.++.+.. |..+++|+.|+ T Consensus 13 v~c~~~n~l~~ip~~----~~l~~L~~L~l~~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~-f~~l~~L~~L~ 86 (347) T 2ifg_A 13 LRCTRDGALDSLHHL----PGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLN 86 (347) T ss_dssp EECCSSCCCTTTTTS----CSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEE T ss_pred EEcCCCCCCccCCCC----CCCCCccEEECCCCCCccEeCH-HHhhCccCCCEEECCCCccCccCHHH-hcCCCCCCEEE Confidence 4444 4589998864 7899999999999 99999984 479999 9999999999999998876 89999999999 Q ss_pred CCCCcCC--CchhccCCCCcccccCCCCCCc Q FBpp0305286 256 GCVQLGE--STEAVDNIPKSQQLQGGGTNGL 284 (559) Q Consensus 256 l~~N~~~--~~~~~~~lp~Lk~L~l~~~~l~ 284 (559) +++|.+. +...+..+ +|+.|++.+|.+. T Consensus 87 l~~N~l~~l~~~~~~~~-~L~~l~l~~N~~~ 116 (347) T 2ifg_A 87 LSFNALESLSWKTVQGL-SLQELVLSGNPLH 116 (347) T ss_dssp CCSSCCSCCCSTTTCSC-CCCEEECCSSCCC T ss_pred CCCCCCceeCHHHcCCC-ccceEEeeCCcee Confidence 9999764 33455555 7999977766554No 272>4pbv_A NT-3 growth factor receptor; signaling protein, synapse cell signalling cell surface RECE; HET: NAG; 2.50A {Gallus gallus} PDB: 4pbw_B* Probab=98.62 E-value=1.2e-08 Score=101.36 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=49.2 Q ss_pred CCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhccCCCc Q FBpp0305286 174 PHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQL 251 (559) Q Consensus 174 ~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L 251 (559) ++|+.|+|++| +|+.++.. .+..+++|+.|+|++|+|+.+.. ..|.++ +|++|+|++|.|+++++.. +..+ +| T Consensus 35 ~~l~~L~l~~n~~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~-~L 109 (268) T 4pbv_A 35 RNITSIHIENWKNLQTLNAV--DMELYTGLQRLTIRNSGLRNIQP-RAFAKNPHLRYIDLSGNRLTTLSWQL-FQTL-RL 109 (268) T ss_dssp GGCCEEEEECBTTCCEECHH--HHTTCTTCCEEEEESSCCCEECT-TTTTTCTTCCEEECTTSCCSCCCGGG-GTTC-CC T ss_pred CceeEEecCCCcCcccCCHh--HhhhccCCCEEEcCCCcccccCH-HHhCCCcCCCEEECCCCcccccCHHH-cCCC-cc Confidence 55666666666 66665532 13566666666666666665542 355666 6666666666666655543 4333 56 Q ss_pred cEEeCCCCcC Q FBpp0305286 252 KNVHGCVQLG 261 (559) Q Consensus 252 ~~Ldl~~N~~ 261 (559) +.|++++|.. T Consensus 110 ~~l~l~~N~~ 119 (268) T 4pbv_A 110 FDLRLERNPF 119 (268) T ss_dssp SEEECTTCCE T ss_pred cEEEecCCce Confidence 6666666644No 273>4pbv_A NT-3 growth factor receptor; signaling protein, synapse cell signalling cell surface RECE; HET: NAG; 2.50A {Gallus gallus} PDB: 4pbw_B* Probab=98.60 E-value=1.3e-08 Score=101.11 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=60.5 Q ss_pred CCCCcccccccc-CCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 143 FHASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 143 l~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) +.+|+.|.+.+| .+..+ ....+..+++|+.|+|++|+|+.+++. .|.++++|+.|+|++|+|+.++. ..+ T Consensus 34 ~~~l~~L~l~~n~~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~-~~~ 104 (268) T 4pbv_A 34 SRNITSIHIENWKNLQTL------NAVDMELYTGLQRLTIRNSGLRNIQPR--AFAKNPHLRYIDLSGNRLTTLSW-QLF 104 (268) T ss_dssp GGGCCEEEEECBTTCCEE------CHHHHTTCTTCCEEEEESSCCCEECTT--TTTTCTTCCEEECTTSCCSCCCG-GGG T ss_pred cCceeEEecCCCcCcccC------CHhHhhhccCCCEEEcCCCcccccCHH--HhCCCcCCCEEECCCCcccccCH-HHc Confidence 356666666666 65532 122345667777777777777766543 24567777777777777776663 344 Q ss_pred CCCCccEEEeecCcCCCcchhHHhccCCCccEEeC Q FBpp0305286 222 NKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHG 256 (559) Q Consensus 222 ~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl 256 (559) ..++|+.|+|++|++........+..+.+++.+++ T Consensus 105 ~~~~L~~l~l~~N~~~c~c~~~~l~~~~~~~~~~l 139 (268) T 4pbv_A 105 QTLRLFDLRLERNPFQCSCDIRWIQLWQEKGEANL 139 (268) T ss_dssp TTCCCSEEECTTCCEECSGGGHHHHHHHHHTGGGG T ss_pred CCCcccEEEecCCceEeecccHHHHHHHHhccccc Confidence 44577777777777754332111444444444443No 274>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Probab=98.57 E-value=1.1e-08 Score=107.16 Aligned_cols=184 Identities=12% Similarity=-0.007 Sum_probs=111.5 Q ss_pred CCCCCccccccccCCcchhh---hHHHHHHhhccCCCccEEEccCC-cCCCCcCccccccCCCCCCEEeCCCCCCCCCCc Q FBpp0305286 142 RFHASPELSLHFCPLHMVKL---LETVLVLSNHLFPHVTSLVLSNN-YLCSLKAFAGNSQSFASLERLDISANRIQDLGE 217 (559) Q Consensus 142 ~l~~L~~L~l~~~~l~~~~~---~~~~l~~i~~~l~~L~~L~Ls~N-~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~ 217 (559) .|++|+.|.+..+.+..... -...+......+++|++|+|++| .+.. . ...+++|+.|+|++|.|+... T Consensus 137 ~l~~L~~L~L~~~~~~~~~ls~~~~~~l~~~l~~~~~L~~L~Ls~n~~l~~-~-----~~~~~~L~~L~L~~n~l~~~~- 209 (362) T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-G-----KKPRPNLKSLEIISGGLPDSV- 209 (362) T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-C-----SCBCTTCSEEEEECSBCCHHH- T ss_pred hCccccEEEecCccccccccccccHHHHHHHHHhCCCcCEEecCCCCCCCc-c-----cccCCCCCEEEccCCCCCHHH- Confidence 45667777776554311100 00122334478999999999995 5543 1 146789999999999997432 Q ss_pred cCccC--CC-CccEEEee--cCcCC-Ccch---hHHhc--cCCCccEEeCCCCcCCCc--hhcc---CCCCcccccCCCC Q FBpp0305286 218 LNYIN--KL-SCKTIFLA--GNGLA-KLSV---DVIRK--MLPQLKNVHGCVQLGEST--EAVD---NIPKSQQLQGGGT 281 (559) Q Consensus 218 l~~l~--~l-~L~~L~L~--~N~l~-~~~~---~~il~--~lp~L~~Ldl~~N~~~~~--~~~~---~lp~Lk~L~l~~~ 281 (559) +..+. .+ +|++|+|+ .|.+. .... ...+. .+|+|+.|+++.|.+... ..+. .+++|+.|++++| T Consensus 210 ~~~l~~~~~~~L~~L~Ls~~~n~~~~~~~~~~l~~~l~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~L~~LdLs~N 289 (362) T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362) T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS T ss_pred HHHHHhccCCCCcEEEEeccccccccchhHHHHHHHhccccCCCCCEEECCCCCCChHHHHHHHhcccCCCcCEEECCCC Confidence 12343 66 99999995 45552 2111 11244 799999999999965432 2233 5789999966666 Q ss_pred CCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCC--cCccccceeecCCcccc Q FBpp0305286 282 NGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV--QLNYVYGYKLYNRNQKR 340 (559) Q Consensus 282 ~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~--~~~~~L~~L~ls~N~i~ 340 (559) .+.+.. +..+..... .+++|+.|++ .|.+....... ..++ ..|++|+|... T Consensus 290 ~l~~~~---~~~l~~~l~---~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~LdLs~N~~~ 343 (362) T 2ra8_A 290 VLTDEG---ARLLLDHVD---KIKHLKFINMKYNYLSDEMKKELQKSLP--MKIDVSDSQEY 343 (362) T ss_dssp CCBHHH---HHHHHTTHH---HHTTCSEEECCSBBCCHHHHHHHHHHCC--SEEECCSBCCC T ss_pred CCcHHH---HHHHHHhcc---cCCCCCEEECcCCcCCHHHHHHHHHhcC--CeEecCCCccc Confidence 443322 222222111 4689999999 66644322111 1233 78999999854No 275>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Probab=98.36 E-value=1.4e-07 Score=88.32 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=81.5 Q ss_pred HHHHhhccCCCccEEEccCC-cCCCC--cCccccccCCCCCCEEeCCCCCCCCCCc--c-CccCCC-CccEEEeecCcCC Q FBpp0305286 165 VLVLSNHLFPHVTSLVLSNN-YLCSL--KAFAGNSQSFASLERLDISANRIQDLGE--L-NYINKL-SCKTIFLAGNGLA 237 (559) Q Consensus 165 ~l~~i~~~l~~L~~L~Ls~N-~L~~l--~~~~~l~~~l~~L~~L~Ls~N~L~~l~~--l-~~l~~l-~L~~L~L~~N~l~ 237 (559) .+......+++|++|+|++| .|+.- ..+...+..+++|+.|+|++|.|+.... + ..+... +|++|+|++|.++ T Consensus 27 ~l~~~l~~~~~L~~L~Ls~n~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 106 (185) T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185) T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC T ss_pred HHHHHHhCCCceeEEECCCCCCcCHHHHHHHHHHHhcCCcccEEEccCCccChHHHHHHHHHHhcCCCeeEEECcCCCCC Confidence 34455688999999999999 88762 2222234678899999999999885321 0 124445 8999999999998 Q ss_pred CcchhH---HhccCCCccEEeCC--CCcCCCc------hhccCCCCcccccCCCCCC Q FBpp0305286 238 KLSVDV---IRKMLPQLKNVHGC--VQLGEST------EAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 238 ~~~~~~---il~~lp~L~~Ldl~--~N~~~~~------~~~~~lp~Lk~L~l~~~~l 283 (559) ...... .+..+++|++|+++ .|.+... ..+...++|+.|++++|.+ T Consensus 107 ~~~~~~l~~~l~~~~~L~~L~L~~~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 163 (185) T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185) T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH T ss_pred hHHHHHHHHHHHhCCcceEEEecCCCCCCCHHHHHHHHHHHHhCCCceEEecCCCcc Confidence 743221 25677899999999 7765432 1334568888885555543No 276>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Probab=98.35 E-value=1e-07 Score=105.18 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=54.0 Q ss_pred CCCcccccccc-CCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcC--ccccccCCCCCCEEeCCCCCCC-CCCccC Q FBpp0305286 144 HASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKA--FAGNSQSFASLERLDISANRIQ-DLGELN 219 (559) Q Consensus 144 ~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~--~~~l~~~l~~L~~L~Ls~N~L~-~l~~l~ 219 (559) ++|+.|.+.+| .+.. ..+..+..++++|++|+|++|.++.... +..+...+++|+.|+|++|.+. ....+. T Consensus 130 ~~L~~L~L~~~~~~~~-----~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594) T 2p1m_B 130 KNFKVLVLSSCEGFST-----DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594) T ss_dssp TTCCEEEEESCEEEEH-----HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH T ss_pred CCCcEEEcCCCCCCCH-----HHHHHHHHhCCCCCEEECCCCcccccchHHHHHHHhcCCCccEEEecCCCcccCHHHHH Confidence 45555555555 2221 1222333456667777776666654221 2222345666777777666652 111011 Q ss_pred -ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCC Q FBpp0305286 220 -YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCV 258 (559) Q Consensus 220 -~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~ 258 (559) .+..+ +|++|+|++|...+..+.. +..+++|++|+++. T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~ 244 (594) T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGG 244 (594) T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSB T ss_pred HHHhcCCCCCEEEecCCccHHHHHHH-HHhCCcceEccCcC Confidence 12334 6666776665432222222 56666666666653No 277>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Probab=98.33 E-value=4.1e-08 Score=108.43 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=31.6 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISA 209 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~ 209 (559) +++|+.|.+.+|.++.. .+..+...+++|++|+|++|. .. .....+...+++|+.|+|++ T Consensus 288 ~~~L~~L~Ls~~~l~~~-----~~~~l~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~L~~L~l~~ 347 (594) T 2p1m_B 288 CSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDYI-ED-AGLEVLASTCKDLRELRVFP 347 (594) T ss_dssp HTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGGG-HH-HHHHHHHHHCTTCCEEEEEC T ss_pred cccCCEEeccCCCCChH-----HHHHHHHhCCCCCEEeecCcc-CH-HHHHHHHHhCCCCCEEEeec Confidence 46777888877765421 222233566666666666541 11 11111223556666666664No 278>4oju_A Hypothetical leucine rich repeat protein; leucine rich repeats,PF13306 family protein, putative protei binding; HET: MSE; 2.00A {Pseudoflavonifractor capillosus} Probab=98.29 E-value=7.1e-07 Score=81.20 Aligned_cols=96 Identities=8% Similarity=-0.007 Sum_probs=57.9 Q ss_pred CCCccEEEccCC---------cCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchh Q FBpp0305286 173 FPHVTSLVLSNN---------YLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVD 242 (559) Q Consensus 173 l~~L~~L~Ls~N---------~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~ 242 (559) +++|+.|+|++| .++.++.. .|.++ +|+.|+|++| ++.++. .+|.++ +|+++.|.+| +..+... T Consensus 33 ~~~L~~l~l~~n~~~i~~~p~~i~~I~~~--aF~~~-~L~~l~l~~n-l~~I~~-~aF~~~~~L~~l~l~~n-l~~I~~~ 106 (148) T 4oju_A 33 LAGSTYADIPASVTDENGQEYPVTVIGEK--AFEET-NITGVTVPDS-VISIGR-LAFAYCNSLSDVKLSEN-LIYINEL 106 (148) T ss_dssp GCSSSEEECCSEEECTTSCEEEEEEECTT--TTTTC-CCSEEECCTT-CCEECT-TTTTTCTTCCEEECCTT-CCEECTT T ss_pred ccCceEEEeCCCccccCCcCchheEEchH--hCCCC-ceeEEEeCCc-ccchhH-HHhhCCCCCCEEEeCCC-ceEEchH Confidence 566666666666 66666544 34566 6666666665 555553 366666 6666666666 6555554 Q ss_pred HHhccCCCccEEeCCCC-cCCCchhccCCCCcccc Q FBpp0305286 243 VIRKMLPQLKNVHGCVQ-LGESTEAVDNIPKSQQL 276 (559) Q Consensus 243 ~il~~lp~L~~Ldl~~N-~~~~~~~~~~lp~Lk~L 276 (559) + |..+++|+.|++..| ... ..+|..+++|+.+ T Consensus 107 a-F~~~~~L~~l~l~~ni~~i-~~aF~~~~~L~~l 139 (148) T 4oju_A 107 A-FASCDALKEITIPASVEKM-DNPFRWSNALDTV 139 (148) T ss_dssp T-TTTCTTCCEEEECTTCCEE-ESTTTTCTTCCEE T ss_pred H-hhCCCCCCEEEeCCCceeH-HHHhcCCCCCCEE Confidence 4 666666666666655 112 4455566666666No 279>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Probab=98.26 E-value=6.8e-08 Score=96.93 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=45.9 Q ss_pred CCccE--EEccCCcCCCCcCc-cccccCCCCCCEEeCCCCCCCCCCcc-CccCCC-CccEEEeecCcCCCcchhHHhccC Q FBpp0305286 174 PHVTS--LVLSNNYLCSLKAF-AGNSQSFASLERLDISANRIQDLGEL-NYINKL-SCKTIFLAGNGLAKLSVDVIRKML 248 (559) Q Consensus 174 ~~L~~--L~Ls~N~L~~l~~~-~~l~~~l~~L~~L~Ls~N~L~~l~~l-~~l~~l-~L~~L~L~~N~l~~~~~~~il~~l 248 (559) +.|+. |+|++|++..+++. ...+..+++|+.|+|++|+|+.++.+ ..+.++ +|++|+|++|.|++.. . +..+ T Consensus 141 ~~L~~~~L~ls~N~~~~i~~~l~~~~~~l~~L~~L~Ls~N~l~~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l 217 (267) T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--E-LDKI 217 (267) T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--G-GGGG T ss_pred cchhhcCeeeecchhhHHHHHHHHHHhcCCcCCEEECCCCccccccchHHHHhhCCCCCEEeCCCCcCCCHH--H-HHHh Confidence 34555 66666654433321 11124566666666666666655422 134455 6666666666666651 1 3444 Q ss_pred C--CccEEeCCCCcC Q FBpp0305286 249 P--QLKNVHGCVQLG 261 (559) Q Consensus 249 p--~L~~Ldl~~N~~ 261 (559) + +|+.|++++|.+ T Consensus 218 ~~l~L~~L~L~~N~l 232 (267) T 3rw6_A 218 KGLKLEELWLDGNSL 232 (267) T ss_dssp TTSCCSEEECTTSTT T ss_pred hcCCCcEEEEeCCCC Confidence 4 666666666644No 280>4wp6_A MRNA export protein; LRR domain nuclear export mRNA binding, transport protein; 1.70A {Chaetomium thermophilum} Probab=98.25 E-value=1e-07 Score=88.35 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=42.9 Q ss_pred ccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCc--------cC----CC-CccEEEeecCcCCCcchh Q FBpp0305286 176 VTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNY--------IN----KL-SCKTIFLAGNGLAKLSVD 242 (559) Q Consensus 176 L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~--------l~----~l-~L~~L~L~~N~l~~~~~~ 242 (559) |+.|++++|++..++.+ ..+++|+.|++++|.+..++.+.. +. .+ +|++|++++|.+.+.... T Consensus 27 L~~l~l~~n~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~n~l~~~~~~~~~L~~L~l~~n~l~~~~~~ 102 (183) T 4wp6_A 27 LARRYNAEQKLLDLSAL----GTDETLSSLGSFNNQSLAEKSFKALMHLVSNEYKDPEQKNEAIQAVSLARNDILDVGQV 102 (183) T ss_dssp HHHHEETTTTEEECTTG----GGC-------------CCHHHHHHHHHHHHHHCSSHHHHHHHCCEEECCSSCCSCGGGG T ss_pred HHHHhCCCCCcccchhc----cCCcchhhccccccchhhhhhhhHHHHHHhCCCCccccccccccEEECCCCcCcccHHH Confidence 55555666665555332 455566666666665543321100 01 24 566677777766665321 Q ss_pred -HHhccCCCccEEeCCCCcCCCc---hhc-cCCCCcccc Q FBpp0305286 243 -VIRKMLPQLKNVHGCVQLGEST---EAV-DNIPKSQQL 276 (559) Q Consensus 243 -~il~~lp~L~~Ldl~~N~~~~~---~~~-~~lp~Lk~L 276 (559) ..+..+++|+.|++++|.+... ..+ ..+++|+.| T Consensus 103 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~L 141 (183) T 4wp6_A 103 YSLAVTLPRLRRLDLSGNNLENLSKISKWQQEFRFLEEL 141 (183) T ss_dssp TTHHHHCTTCCEEECTTSCCCSGGGTGGGTTCCTTCCEE T ss_pred HHHHhhCCCCCEEECCCCcCCCHHHHHHHHhcCCCccEE Confidence 1245666777777776654332 222 445666666No 281>4pki_G Gelsolin,tropomodulin-1 chimera; TMOD, actin filament, pointed-END capping protein, tropomyos contractIle protein, actin-binding protein; HET: HIC ATP; 2.30A {Homo sapiens} Probab=98.24 E-value=6.7e-07 Score=92.17 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=85.5 Q ss_pred HHHHHhhccCCCccEEEccCC-cCCCC--cCccccccCCCCCCEEeCCCCCCCC-----CCccCccCCC-CccEEEeecC Q FBpp0305286 164 TVLVLSNHLFPHVTSLVLSNN-YLCSL--KAFAGNSQSFASLERLDISANRIQD-----LGELNYINKL-SCKTIFLAGN 234 (559) Q Consensus 164 ~~l~~i~~~l~~L~~L~Ls~N-~L~~l--~~~~~l~~~l~~L~~L~Ls~N~L~~-----l~~l~~l~~l-~L~~L~L~~N 234 (559) ..+..+...++.|++|+|++| .|+.- ..+...+..+++|+.|+|++|.|+. +.. .+... +|++|+|++| T Consensus 160 ~~l~~~l~~~~~L~~L~Ls~n~~l~~~~~~~l~~~L~~~~~L~~L~Ls~n~l~~~g~~~l~~--~L~~~~~L~~L~Ls~N 237 (324) T 4pki_G 160 ETLERIKNNDPKLEEVNLNNIRNIPIPTLKAYAEALKENSYVKKFSIVGTRSNDPVAYALAE--MLKENKVLKTLNVESN 237 (324) T ss_dssp HHHHHHHTTCTTCCEEECTTCSCCCHHHHHHHHHHHTTCSSCCEEECTTSCCCHHHHHHHHH--HHTTCSSCCEEECCSS T ss_pred HHHHHHHhcCCCceEEEcccCCCcCHHHHHHHHHHHHhCCeeeEEEeeCCcCChHHHHHHHH--HHHhCCCcCEEECCCC Confidence 445556689999999999999 88762 1233335778999999999999986 322 45666 8999999999 Q ss_pred cCCCcchhH---HhccCCCccEEeCC--CCcCCCc------hhccCCCCcccccCCCCCC Q FBpp0305286 235 GLAKLSVDV---IRKMLPQLKNVHGC--VQLGEST------EAVDNIPKSQQLQGGGTNG 283 (559) Q Consensus 235 ~l~~~~~~~---il~~lp~L~~Ldl~--~N~~~~~------~~~~~lp~Lk~L~l~~~~l 283 (559) .|++..... .+..+++|+.|+++ .|.+... ..+...++|+.|+++.|.+ T Consensus 238 ~l~~~g~~~l~~~L~~~~~L~~L~L~~~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i 297 (324) T 4pki_G 238 FISGAGILRLVEALPYNTSLVEMKIDNQSQPLGNKVEMEIVSMLEKNATLLKFGYHFTQQ 297 (324) T ss_dssp CCCHHHHHHHHHTGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHTTCSSCCEEECCCSSH T ss_pred CCChHHHHHHHHHHHhCCCcCEEEEeCCCCccCHHHHHHHHHHHHhCCCccEEeCcCCCC Confidence 998743221 26678999999999 6765421 2345668899995555543No 282>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Probab=98.22 E-value=6.5e-07 Score=83.78 Aligned_cols=120 Identities=12% Similarity=0.006 Sum_probs=84.0 Q ss_pred CCCCCCcccccccc-CCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCc--CccccccCCCCCCEEeCCCCCCCCCC- Q FBpp0305286 141 SRFHASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLK--AFAGNSQSFASLERLDISANRIQDLG- 216 (559) Q Consensus 141 s~l~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~--~~~~l~~~l~~L~~L~Ls~N~L~~l~- 216 (559) +.+++++.|.+.+| .+... .+. .+......+++|++|+|++|.|+... .+...+...++|+.|+|++|+|++.. T Consensus 33 ~~~~~L~~L~Ls~n~~l~~~-~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 110 (185) T 1io0_A 33 NNDPDLEEVNLNNIMNIPVP-TLK-ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185) T ss_dssp TTCTTCCEEECTTCTTCCHH-HHH-HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH T ss_pred hCCCceeEEECCCCCCcCHH-HHH-HHHHHHhcCCcccEEEccCCccChHHHHHHHHHHhcCCCeeEEECcCCCCChHHH Confidence 34567777777788 77632 111 12233467899999999999998632 22222356799999999999998621 Q ss_pred -c-cCccCCC-CccEEEee--cCcCCCcchh---HHhccCCCccEEeCCCCcCC Q FBpp0305286 217 -E-LNYINKL-SCKTIFLA--GNGLAKLSVD---VIRKMLPQLKNVHGCVQLGE 262 (559) Q Consensus 217 -~-l~~l~~l-~L~~L~L~--~N~l~~~~~~---~il~~lp~L~~Ldl~~N~~~ 262 (559) . ...+... +|++|+|+ +|++...... ..+..+++|++|++++|.+. T Consensus 111 ~~l~~~l~~~~~L~~L~L~~~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 164 (185) T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185) T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH T ss_pred HHHHHHHHhCCcceEEEecCCCCCCCHHHHHHHHHHHHhCCCceEEecCCCccC Confidence 0 1145666 89999999 9999874432 22567899999999999654No 283>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Probab=98.22 E-value=5e-07 Score=99.68 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=64.7 Q ss_pred CccccccccC-CcchhhhHHHHHHhhccCCCccEEEccCCcCCCCcC--ccccccCCCCCCEEeCCCCCCCCCCc--cC- Q FBpp0305286 146 SPELSLHFCP-LHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKA--FAGNSQSFASLERLDISANRIQDLGE--LN- 219 (559) Q Consensus 146 L~~L~l~~~~-l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~~--~~~l~~~l~~L~~L~Ls~N~L~~l~~--l~- 219 (559) |+.|.+.+|. +. ...+..+...+++|++|+|++|.++.... +..+...+++|+.|+|++|.++.+.. +. T Consensus 140 L~~L~L~~~~~~~-----~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 214 (592) T 3ogk_B 140 LETLKLDKCSGFT-----TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592) T ss_dssp CCEEEEESCEEEE-----HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH T ss_pred CeEEEeeCCCCcC-----HHHHHHHHhhCCCCCEEeccCCccccccHHHHHHHHhcCCCCCEEEeecCCCCccCHHHHHH Confidence 5666665554 22 12233344577888888888887754321 22233557888888888888764331 10 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCC Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCV 258 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~ 258 (559) .+.++ +|++|+|++|.+.+... .+..+++|+.|+++. T Consensus 215 l~~~~~~L~~L~L~~~~~~~l~~--~~~~~~~L~~L~l~~ 252 (592) T 3ogk_B 215 IARNCRSLVSVKVGDFEILELVG--FFKAAANLEEFCGGS 252 (592) T ss_dssp HHHHCTTCCEEECSSCBGGGGHH--HHHHCTTCCEEEECB T ss_pred HHhhCCCCCEEEccCCCHHHHHH--HHHhCCcHhhhhhhh Confidence 12456 78888888887766542 267777777777764No 284>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Probab=98.19 E-value=6.6e-07 Score=98.71 Aligned_cols=72 Identities=10% Similarity=0.017 Sum_probs=42.0 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhccCCCccEEEccCCcCCCCc--CccccccCCCCCCEEeCCCCCCCCCC Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLK--AFAGNSQSFASLERLDISANRIQDLG 216 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l~--~~~~l~~~l~~L~~L~Ls~N~L~~l~ 216 (559) +++|+.|.+.+|.+.... ...+..+...+++|++|+|++|.++.+. .+..++..+++|+.|+|++|.+..++ T Consensus 163 ~~~L~~L~L~~~~~~~~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~l~ 236 (592) T 3ogk_B 163 CRKIKTLLMEESSFSEKD--GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236 (592) T ss_dssp CTTCSEEECTTCEEECCC--SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH T ss_pred CCCCCEEeccCCcccccc--HHHHHHHHhcCCCCCEEEeecCCCCccCHHHHHHHHhhCCCCCEEEccCCCHHHHH Confidence 456777777766543210 0112333356778888888888776332 22233456778888888877765543No 285>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 4wwu_C Probab=98.16 E-value=2.3e-06 Score=79.96 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=80.7 Q ss_pred cchhhhhhhhcccccCcccc-cccccc-cc---ccceeeeecCCcCccccceeecCCccccCCChhhhhhhhhhhhHHHH Q FBpp0305286 285 KFCQDFISSYYTFFDDTEER-FKLKKY-YD---DQAMFSLSVPVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALL 359 (559) Q Consensus 285 ~L~~n~L~~~~~~~d~~~~l-~~L~~L-~l---~N~l~sl~~~~~~~~~L~~L~ls~N~i~~~~~~~rl~~L~~g~~~i~ 359 (559) .....|++.|+..||. ++ ..|..+ |. +++..++ .+|. ..|..+|. T Consensus 17 ~iAe~FVk~YY~~fD~--~Rr~~L~~~yy~y~~d~S~Lt~---------------nG~~-------------v~G~~~I~ 66 (184) T 1of5_B 17 QITATFTKKILAHLDD--PDSNKLAQFVQLFNPNNCRIIF---------------NATP-------------FAQATVFL 66 (184) T ss_dssp HHHHHHHHHHHHHHHC--CCCC-CHHHHTTBCSS-CCEEE---------------TTEE-------------ESCHHHHH T ss_pred HHHHHHHHHHHHHHcc--CcHHHHHHHhhccCCCCcEEEE---------------CCce-------------ecCHHHHH Confidence 6678899999999997 55 677764 45 4444443 2232 36888899 Q ss_pred HHhhc-CCCCCcCCCceeeeeEeecC-CEEEEEEcCceEEcCCCCCCCcceeeeEEE--EecCC---------------- Q FBpp0305286 360 LALSR-LPLMHTDLENVGLDIQVFTS-SLRIFTLTGYFKEISSDTLEPRRFQRTFVL--QTSNS---------------- 419 (559) Q Consensus 360 ~~L~~-LP~t~h~lssl~vD~~~~~~-~ll~itV~G~f~e~~~~~~~~r~F~RtFvl--~p~~n---------------- 419 (559) .+|.+ ||.++|.+.+ +||++..+ ..+++.|+|.++..+. ..+.|.++|+| .|.+. T Consensus 67 ekl~sqLP~t~H~I~t--~D~QPi~g~g~iLV~VsG~V~~de~---~~~~F~QtF~L~~~P~~~~~~~~~~~~~~~r~~w 141 (184) T 1of5_B 67 QMWQNQVVQTQHALTG--VDYHAIPGSGTLICNVNCKVRFDES---GRDKMGQDATVPIQPNNTGNRNRPNDMNKPRPLW 141 (184) T ss_dssp HHHHHHSCCCEEEEEE--EEEEEETTTTEEEEEEEEEEECC--------------------------------------C T ss_pred HHHHhhCCCeEEEEee--EceeEcCCCCeEEEEEEEEEEECCC---CCcccCeEEEeecCCCCCCcccCccccccCCccc Confidence 99999 9999999874 59999984 5799999999987654 68999999999 76532 Q ss_pred CcEEEEccceEEeeCCC--CCcceEEeccccccccCCCC Q FBpp0305286 420 PGWLITNDMLCITSTMP--DPKKTIKFKPETNMINTDPS 456 (559) Q Consensus 420 ~~~~I~ND~l~i~~~~~--~~~~~i~~~~~~~~~~~~p~ 456 (559) |.|+=++=++.+-+--- +--+.|..+.|+.-.-++-. T Consensus 142 g~~~g~~~~~v~d~~~~~~~~~~~i~~~ny~~~y~p~ds 180 (184) T 1of5_B 142 GPYFGISLQLIIDDRIFRNDFNGVISGFNYNMVYKPEDS 180 (184) T ss_dssp CCCEEEEEEEEEEGGGGGTCCTTCEEEEEEEEEECCC-- T ss_pred ccccceeEEEEEeehhhcCCccceEEEeeeEEEEcCccc Confidence 34554444444332221 11258888888887755543No 286>4oju_A Hypothetical leucine rich repeat protein; leucine rich repeats,PF13306 family protein, putative protei binding; HET: MSE; 2.00A {Pseudoflavonifractor capillosus} Probab=98.11 E-value=2.5e-06 Score=77.60 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=73.2 Q ss_pred HhhccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcchhHHhc Q FBpp0305286 168 LSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSVDVIRK 246 (559) Q Consensus 168 ~i~~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~~~il~ 246 (559) ..|.++ +|+.|+|.+| ++.++.. .|.++++|+.|+|++| ++.++. .+|.++ +|+++.|.+| +..+ ..+ |. T Consensus 61 ~aF~~~-~L~~l~l~~n-l~~I~~~--aF~~~~~L~~l~l~~n-l~~I~~-~aF~~~~~L~~l~l~~n-i~~i-~~a-F~ 131 (148) T 4oju_A 61 KAFEET-NITGVTVPDS-VISIGRL--AFAYCNSLSDVKLSEN-LIYINE-LAFASCDALKEITIPAS-VEKM-DNP-FR 131 (148) T ss_dssp TTTTTC-CCSEEECCTT-CCEECTT--TTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEECTT-CCEE-EST-TT T ss_pred HhCCCC-ceeEEEeCCc-ccchhHH--HhhCCCCCCEEEeCCC-ceEEch-HHhhCCCCCCEEEeCCC-ceeH-HHH-hc Confidence 356888 9999999987 8888765 4689999999999999 999985 589999 9999999999 8888 665 99 Q ss_pred cCCCccEEeCCCCc Q FBpp0305286 247 MLPQLKNVHGCVQL 260 (559) Q Consensus 247 ~lp~L~~Ldl~~N~ 260 (559) .+++|+.+++..|. T Consensus 132 ~~~~L~~l~l~~n~ 145 (148) T 4oju_A 132 WSNALDTVYMEGMV 145 (148) T ss_dssp TCTTCCEEEECCC- T ss_pred CCCCCCEEEECCCC Confidence 99999999998873No 287>4xm4_A MEX67; nuclear transport, mRNA export, transport protein; 2.95A {Chaetomium thermophilum} Probab=98.08 E-value=5.5e-07 Score=94.92 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=0.0 Q ss_pred CccEEEeecCcCCCcch-hHHhccCCCccEEeCCCCcCCCch---hc-cCCCCcccc Q FBpp0305286 225 SCKTIFLAGNGLAKLSV-DVIRKMLPQLKNVHGCVQLGESTE---AV-DNIPKSQQL 276 (559) Q Consensus 225 ~L~~L~L~~N~l~~~~~-~~il~~lp~L~~Ldl~~N~~~~~~---~~-~~lp~Lk~L 276 (559) +|+.|+|++|.|..... ...+..+++|+.|++++|.+.... .+ ..+++|+.| T Consensus 84 ~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~~l~~L~~L 140 (386) T 4xm4_A 84 AIQAVSLARNDILDVGQVYSLAVTLPRLRRLDLSGNNLENLSKISKWQQEFRFLEEL 140 (386) T ss_dssp --------------------------------------------------------- T ss_pred cCCEEECCCCCCCCchhhHHHHhhCCCCCEEECCCCCCCCcHHHHHHHhcCCchheE Confidence 66666666666666521 112445666666666666543221 22 345566666No 288>4pki_G Gelsolin,tropomodulin-1 chimera; TMOD, actin filament, pointed-END capping protein, tropomyos contractIle protein, actin-binding protein; HET: HIC ATP; 2.30A {Homo sapiens} Probab=98.04 E-value=3e-06 Score=87.30 Aligned_cols=120 Identities=12% Similarity=-0.002 Sum_probs=85.7 Q ss_pred CCCCCCcccccccc-CCcchhhhHHHHHHhhccCCCccEEEccCCcCCCC--cCccccccCCCCCCEEeCCCCCCCCCC- Q FBpp0305286 141 SRFHASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSL--KAFAGNSQSFASLERLDISANRIQDLG- 216 (559) Q Consensus 141 s~l~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l--~~~~~l~~~l~~L~~L~Ls~N~L~~l~- 216 (559) ..+..|+.|.+.+| .+... .+ ..+......+++|+.|+|++|.|+.- ..+...+..+++|+.|+|++|.|+... T Consensus 167 ~~~~~L~~L~Ls~n~~l~~~-~~-~~l~~~L~~~~~L~~L~Ls~n~l~~~g~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~ 244 (324) T 4pki_G 167 NNDPKLEEVNLNNIRNIPIP-TL-KAYAEALKENSYVKKFSIVGTRSNDPVAYALAEMLKENKVLKTLNVESNFISGAGI 244 (324) T ss_dssp TTCTTCCEEECTTCSCCCHH-HH-HHHHHHHTTCSSCCEEECTTSCCCHHHHHHHHHHHTTCSSCCEEECCSSCCCHHHH T ss_pred hcCCCceEEEcccCCCcCHH-HH-HHHHHHHHhCCeeeEEEeeCCcCChHHHHHHHHHHHhCCCcCEEECCCCCCChHHH Confidence 35778888888888 77632 11 12233346789999999999999872 122223467899999999999998521 Q ss_pred -c-cCccCCC-CccEEEee--cCcCCCcchhH---HhccCCCccEEeCCCCcCC Q FBpp0305286 217 -E-LNYINKL-SCKTIFLA--GNGLAKLSVDV---IRKMLPQLKNVHGCVQLGE 262 (559) Q Consensus 217 -~-l~~l~~l-~L~~L~L~--~N~l~~~~~~~---il~~lp~L~~Ldl~~N~~~ 262 (559) . ...+... +|++|+|+ +|.++...... .+..+++|+.|+++.|.+. T Consensus 245 ~~l~~~L~~~~~L~~L~L~~~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 298 (324) T 4pki_G 245 LRLVEALPYNTSLVEMKIDNQSQPLGNKVEMEIVSMLEKNATLLKFGYHFTQQG 298 (324) T ss_dssp HHHHHTGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHTTCSSCCEEECCCSSHH T ss_pred HHHHHHHHhCCCcCEEEEeCCCCccCHHHHHHHHHHHHhCCCccEEeCcCCCCC Confidence 0 1145666 89999999 89998643322 2667799999999999654No 289>4wyk_A Nuclear RNA export factor 1; nuclear export, transport protein; 3.40A {Homo sapiens} Probab=98.04 E-value=1.1e-06 Score=95.05 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=57.3 Q ss_pred cCCCCCCEEeCCCCCCCCCCccC-ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcCCC---------ch Q FBpp0305286 197 QSFASLERLDISANRIQDLGELN-YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGES---------TE 265 (559) Q Consensus 197 ~~l~~L~~L~Ls~N~L~~l~~l~-~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~~~---------~~ 265 (559) ..+++|+.|+|++|+|+.++.+. .+..+ +|+.|+|++|.|........+..+ +|+.|++.+|++.. .. T Consensus 168 ~~l~~L~~L~Ls~N~i~~l~~l~~~~~~l~~L~~L~Ls~N~I~~l~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 246 (461) T 4wyk_A 168 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 246 (461) T ss_dssp HHCSCCCEEECTTSCCCCSGGGTTHHHHCTTCCEEECTTCCCCCGGGGGGGCSS-CCSEEECTTCGGGGTCSSHHHHHHH T ss_pred hhCCCceEEECCCCcccCccchHHHHhhCCCCCEEeCCCCCCCChhHhhhhccC-CccEEEccCCCCCcccCcchhHHHH Confidence 56788999999999998887532 23467 899999999999887432226666 88999998887643 22 Q ss_pred hccCCCCcccc Q FBpp0305286 266 AVDNIPKSQQL 276 (559) Q Consensus 266 ~~~~lp~Lk~L 276 (559) .+..+|+|+.| T Consensus 247 i~~~lp~L~~L 257 (461) T 4wyk_A 247 IRERFPKLLRL 257 (461) T ss_dssp HHHHCTTCSEE T ss_pred HHHhCccceee Confidence 45567777776No 290>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Probab=97.99 E-value=2.6e-06 Score=79.61 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=65.8 Q ss_pred ccCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCC-CCCCCccCccCC----C-CccEEEeecCc-CCCcchhH Q FBpp0305286 171 HLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANR-IQDLGELNYINK----L-SCKTIFLAGNG-LAKLSVDV 243 (559) Q Consensus 171 ~~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~-L~~l~~l~~l~~----l-~L~~L~L~~N~-l~~~~~~~ 243 (559) ..+++|++|+|++|.|+... ... +..+++|+.|+|++|. |++.. +..+.. . +|++|+|++|. ++...... T Consensus 58 ~~~~~L~~L~Ls~~~i~d~~-~~~-l~~~~~L~~L~L~~c~~itd~~-l~~l~~~~~~~~~L~~L~Ls~c~~itd~gl~~ 134 (176) T 3e4g_A 58 LDKYKIQAIDATDSCIMSIG-FDH-MEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176) T ss_dssp TTCCCEEEEEEESCCCCGGG-GGG-GTTCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH T ss_pred CCCCeeeEEEeECCcccHHH-HHH-hcCCCCCCEEeCCCCCcCcHHH-HHHHHcccccCCCCCEEECCCCCCcCHHHHHH Confidence 56789999999999987632 222 3789999999999998 87533 223333 4 79999999987 87766555 Q ss_pred HhccCCCccEEeCCCCc Q FBpp0305286 244 IRKMLPQLKNVHGCVQL 260 (559) Q Consensus 244 il~~lp~L~~Ldl~~N~ 260 (559) +..+|+|+.|+++++. T Consensus 135 -l~~~~~L~~L~l~~c~ 150 (176) T 3e4g_A 135 -LHHFRNLKYLFLSDLP 150 (176) T ss_dssp -GGGCTTCCEEEEESCT T ss_pred -HHcCCCCCEEECCCCC Confidence 5889999999999875No 291>4nuz_A Endo-beta-N-acetylglucosaminidase F2; glycosynthase, endo-beta-N-acetylglucosaminidase S, endoglyc S, immunoglobulin G; 1.91A {Streptococcus pyogenes serotype M1} PDB: 4nuy_A Probab=97.98 E-value=5.1e-06 Score=94.76 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=18.9 Q ss_pred hccCCCccEEeCCCCcCCCchh--ccCCCCcccccCCCCCC Q FBpp0305286 245 RKMLPQLKNVHGCVQLGESTEA--VDNIPKSQQLQGGGTNG 283 (559) Q Consensus 245 l~~lp~L~~Ldl~~N~~~~~~~--~~~lp~Lk~L~l~~~~l 283 (559) +..|++|+.|++++|.+...+. ++.|++|+.|++++|.+ T Consensus 462 L~~LtnL~~L~LS~N~I~~l~~l~L~~L~~L~~LdLs~N~I 502 (899) T 4nuz_A 462 VSGLTGLKELDLSGFDRETLAGLDAATLTSLEKVDISGNKL 502 (899) T ss_dssp EECCTTCCEEECTTSCCSCCTTBCGGGCTTCCEEECCSSCC T ss_pred hhhCCCCCEEECCCCCCcccCccccccCCCCCEEECCCCcc Confidence 4445555555555554444333 34455555554444444No 292>4nuz_A Endo-beta-N-acetylglucosaminidase F2; glycosynthase, endo-beta-N-acetylglucosaminidase S, endoglyc S, immunoglobulin G; 1.91A {Streptococcus pyogenes serotype M1} PDB: 4nuy_A Probab=97.93 E-value=2.1e-06 Score=97.98 Aligned_cols=85 Identities=15% Similarity=0.018 Sum_probs=57.5 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCC-CCCCCccC-ccCCC-CccEEEeecCcCCCcchhHHhccCC Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANR-IQDLGELN-YINKL-SCKTIFLAGNGLAKLSVDVIRKMLP 249 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~-L~~l~~l~-~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp 249 (559) |.+|+.|++++|+++.++.+..+ .+| |+.|+|++|+ |+.++.+. .+.+| +|++|+|++|.|..+..-. +..++ T Consensus 415 Lt~L~~L~l~~n~in~i~~i~~L-~nL--L~~L~l~~n~~i~~l~~l~~~L~~LtnL~~L~LS~N~I~~l~~l~-L~~L~ 490 (899) T 4nuz_A 415 LSRITKLDRSVLPANMKPGKDTL-ETV--LETYKKDNKEEPATIPPVSLKVSGLTGLKELDLSGFDRETLAGLD-AATLT 490 (899) T ss_dssp CTTCCEESGGGSCGGGSCEECCC-CCC--SCCSSGGGCCCCCEECCCEEEEECCTTCCEEECTTSCCSCCTTBC-GGGCT T ss_pred CCccceeecccCccchhhccchH-HHH--HHHhhcccccccccccccccchhhCCCCCEEECCCCCCcccCccc-cccCC Confidence 55566666666666655544222 333 5677778776 77666221 56788 8889999998888876522 56888 Q ss_pred CccEEeCCCCcC Q FBpp0305286 250 QLKNVHGCVQLG 261 (559) Q Consensus 250 ~L~~Ldl~~N~~ 261 (559) +|+.||++.|.+ T Consensus 491 ~L~~LdLs~N~I 502 (899) T 4nuz_A 491 SLEKVDISGNKL 502 (899) T ss_dssp TCCEEECCSSCC T ss_pred CCCEEECCCCcc Confidence 888999988865No 293>4wwu_A MRNA export factor MEX67; mRNA nuclear export factor, transport protein; 3.30A {Saccharomyces cerevisiae} Probab=97.89 E-value=1.9e-06 Score=93.70 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=0.0 Q ss_pred CCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCCcch-hHHhccCCC Q FBpp0305286 173 FPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAKLSV-DVIRKMLPQ 250 (559) Q Consensus 173 l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~~~~-~~il~~lp~ 250 (559) .+.++.|||++|+ ..+.+ ..+..+..|++++|.+..+..+..+..+ +|++|+|++|.|+.+.. ..+...+|+ T Consensus 117 ~~~~k~LDLS~~~--~~~~L----~~l~~l~~Lnl~~n~~~~l~~i~~l~~~~~L~~L~Ls~N~I~~l~~l~~l~~~lp~ 190 (488) T 4wwu_A 117 DPQTKLLNLGALH--SDPEL----IQKGVFSSISTQSKMFPAMMKLASTEKSLIVESVNLADNQLKDISAISTLAQTFPN 190 (488) T ss_dssp -------------------------------------------------------------------------------- T ss_pred ccccCEEECcCCC--CCccc----cccccccccchhhhhhhhhhhhhhhccCCCCCEEECCCCcCCCCcchhhhhHhhCC Confidence 4567777777766 22232 4455667777777766655443333455 77777777777776543 111345667 Q ss_pred ccEEeCCCCcCCCchh---cc-CCCCcccccCCCCC Q FBpp0305286 251 LKNVHGCVQLGESTEA---VD-NIPKSQQLQGGGTN 282 (559) Q Consensus 251 L~~Ldl~~N~~~~~~~---~~-~lp~Lk~L~l~~~~ 282 (559) |+.|+|++|.+...+. +. .+++|+.|++.+|. T Consensus 191 L~~LdLs~N~I~~l~~l~~l~~~l~~L~~L~L~~Np 226 (488) T 4wwu_A 191 LKNLCLANNQIFRFRSLEVWKNKFKDLRELLMTNNP 226 (488) T ss_dssp ------------------------------------ T ss_pred CCEEECCCCCCCCchhHHHHhhcCCCCCEEEeeCCC Confidence 7777777776543332 22 35577777444443No 294>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Probab=97.76 E-value=1.1e-05 Score=76.91 Aligned_cols=96 Identities=10% Similarity=0.102 Sum_probs=58.8 Q ss_pred HHHHhhccCCCccEEEccCC-cCCC--CcCccccccCCCCCCEEeCCCCCCCCCC--cc-CccCCC-CccEEEeecCcCC Q FBpp0305286 165 VLVLSNHLFPHVTSLVLSNN-YLCS--LKAFAGNSQSFASLERLDISANRIQDLG--EL-NYINKL-SCKTIFLAGNGLA 237 (559) Q Consensus 165 ~l~~i~~~l~~L~~L~Ls~N-~L~~--l~~~~~l~~~l~~L~~L~Ls~N~L~~l~--~l-~~l~~l-~L~~L~L~~N~l~ 237 (559) .+..+....+.|++|+|++| .|.. +..+...+...++|+.|+|++|.|.+-. .+ ..+... .|++|+|++|.|. T Consensus 32 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 111 (197) T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197) T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC T ss_pred HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHHHHhcCCCcCEEeccCCCCCHHHHHHHHHHHhcCCCccEEECcCCcCC Confidence 34444577788888888888 7764 1222222355678888888888887432 11 022333 6888888888887 Q ss_pred CcchhHH---hccCCCccEEeCCCCc Q FBpp0305286 238 KLSVDVI---RKMLPQLKNVHGCVQL 260 (559) Q Consensus 238 ~~~~~~i---l~~lp~L~~Ldl~~N~ 260 (559) ......+ +...+.|+.|+++.|. T Consensus 112 ~~g~~~l~~~L~~n~~L~~L~L~~n~ 137 (197) T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQR 137 (197) T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCS T ss_pred HHHHHHHHHHHHhCCCeeEEEccCCc Confidence 6433222 4455667788877553No 295>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Probab=97.73 E-value=9.5e-06 Score=77.30 Aligned_cols=117 Identities=11% Similarity=0.005 Sum_probs=56.7 Q ss_pred CCCCCcccccccc-CCcchhhhHHHHHHhhccCCCccEEEccCCcCCCC--cCccccccCCCCCCEEeCCCCCCCCCCc- Q FBpp0305286 142 RFHASPELSLHFC-PLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSL--KAFAGNSQSFASLERLDISANRIQDLGE- 217 (559) Q Consensus 142 ~l~~L~~L~l~~~-~l~~~~~~~~~l~~i~~~l~~L~~L~Ls~N~L~~l--~~~~~l~~~l~~L~~L~Ls~N~L~~l~~- 217 (559) ..+.++.|.+.+| .+... .+..... .....+.|++|+|++|.|..- ..+...+...+.|+.|+|++|.|++-.. T Consensus 39 ~~~~L~~L~L~~n~~i~~~-g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 116 (197) T 1pgv_A 39 DDTDLKEVNINNMKRVSKE-RIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197) T ss_dssp TCSSCCEEECTTCCSSCHH-HHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH T ss_pred cCCCCCEEECCCCCCCCHH-HHHHHHH-HHhcCCCcCEEeccCCCCCHHHHHHHHHHHhcCCCccEEECcCCcCCHHHHH Confidence 4455666666665 55421 1111111 123456666666666666542 1222222344666666666666653210 Q ss_pred -c-CccCCC-CccEEEeecCc---CCCcch---hHHhccCCCccEEeCCCCc Q FBpp0305286 218 -L-NYINKL-SCKTIFLAGNG---LAKLSV---DVIRKMLPQLKNVHGCVQL 260 (559) Q Consensus 218 -l-~~l~~l-~L~~L~L~~N~---l~~~~~---~~il~~lp~L~~Ldl~~N~ 260 (559) + ..+... .|++|+|++|. +..... ...+...+.|++|+++.|. T Consensus 117 ~l~~~L~~n~~L~~L~L~~n~n~~i~~~g~~~l~~~l~~n~~L~~L~L~~n~ 168 (197) T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197) T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC T ss_pred HHHHHHHhCCCeeEEEccCCcccccChHHHHHHHHHHHhCCCeeEEeCcCCC Confidence 0 123333 56666666544 443221 1124455666666666654No 296>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Probab=97.55 E-value=0.00013 Score=64.84 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=48.2 Q ss_pred cEEEccCCcCC--CCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCcCCC Q FBpp0305286 177 TSLVLSNNYLC--SLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNGLAK 238 (559) Q Consensus 177 ~~L~Ls~N~L~--~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~l~~ 238 (559) +.|++++|+|+ .+|.. + .++|+.|+|++|+|+.++. ..|.++ +|+.|+|++|++.- T Consensus 11 ~~l~~s~n~L~~~~iP~~--l---~~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~l~L~~Np~~C 69 (130) T 3rfe_A 11 TLVDCGRRGLTWASLPTA--F---PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRC 69 (130) T ss_dssp TEEECCSSCCCTTTSCSC--C---CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBC T ss_pred CEEEeCCCCcccccCCcc--c---CcCCCEEECCCCcCCccCH-HHHhhCccccEEEeeCCCccc Confidence 78999999999 88864 2 2789999999999999984 578888 99999999999964No 297>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Probab=97.47 E-value=4.7e-05 Score=71.05 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=64.8 Q ss_pred ccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecCc-CCCcchhHHhcc---CCCccEEeCCCCc-CCC--chhc Q FBpp0305286 196 SQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGNG-LAKLSVDVIRKM---LPQLKNVHGCVQL-GES--TEAV 267 (559) Q Consensus 196 ~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N~-l~~~~~~~il~~---lp~L~~Ldl~~N~-~~~--~~~~ 267 (559) +...++|+.|+|++|.|++.. +..+.++ +|++|+|++|. ++......+... +|+|++|++++|. +.+ ...+ T Consensus 57 ~~~~~~L~~L~Ls~~~i~d~~-~~~l~~~~~L~~L~L~~c~~itd~~l~~l~~~~~~~~~L~~L~Ls~c~~itd~gl~~l 135 (176) T 3e4g_A 57 PLDKYKIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176) T ss_dssp STTCCCEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG T ss_pred cCCCCeeeEEEeECCcccHHH-HHHhcCCCCCCEEeCCCCCcCcHHHHHHHHcccccCCCCCEEECCCCCCcCHHHHHHH Confidence 467789999999999988654 4467888 99999999998 877655553333 6899999999986 443 3345 Q ss_pred cCCCCcccccCCCC Q FBpp0305286 268 DNIPKSQQLQGGGT 281 (559) Q Consensus 268 ~~lp~Lk~L~l~~~ 281 (559) ..+++|+.|+++++ T Consensus 136 ~~~~~L~~L~l~~c 149 (176) T 3e4g_A 136 HHFRNLKYLFLSDL 149 (176) T ss_dssp GGCTTCCEEEEESC T ss_pred HcCCCCCEEECCCC Confidence 78899999955443No 298>4i6j_B S-phase kinase-associated protein 1; circadian clock, ubiquitination, LRR, F-BOX, photolyase fold periods, nucleus, transcription; 2.70A {Homo sapiens} Probab=97.45 E-value=3.1e-05 Score=81.85 Aligned_cols=15 Identities=0% Similarity=-0.387 Sum_probs=9.3 Q ss_pred CccccceeecCCccc Q FBpp0305286 325 LNYVYGYKLYNRNQK 339 (559) Q Consensus 325 ~~~~L~~L~ls~N~i 339 (559) .++.|++|+++++.+ T Consensus 357 ~~~~L~~L~l~~c~~ 371 (428) T 4i6j_B 357 RCKNLSAIGLGECEV 371 (428) T ss_dssp HCTTCCEEEECSSCE T ss_pred hCccCCEEEecCCcc Confidence 356677777766653No 299>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Probab=96.94 E-value=0.0014 Score=58.10 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=47.6 Q ss_pred CEEeCCCCCCC--CCCccCccCCCCccEEEeecCcCCCcchhHHhccCCCccEEeCCCCcC Q FBpp0305286 203 ERLDISANRIQ--DLGELNYINKLSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLG 261 (559) Q Consensus 203 ~~L~Ls~N~L~--~l~~l~~l~~l~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~N~~ 261 (559) +.|++++|.|+ .+|. .+. .+|++|+|++|.|+.+++.. +..+++|+.|++++|+. T Consensus 11 ~~l~~s~n~L~~~~iP~--~l~-~~l~~L~Ls~N~l~~l~~~~-f~~l~~L~~l~L~~Np~ 67 (130) T 3rfe_A 11 TLVDCGRRGLTWASLPT--AFP-VDTTELVLTGNNLTALPPGL-LDALPALRTAHLGANPW 67 (130) T ss_dssp TEEECCSSCCCTTTSCS--CCC-TTCSEEECTTSCCSSCCTTT-GGGCTTCCEEECCSSCC T ss_pred CEEEeCCCCcccccCCc--ccC-cCCCEEECCCCcCCccCHHH-HhhCccccEEEeeCCCc Confidence 78999999999 8884 222 38999999999999998876 89999999999999965No 300>4i6j_B S-phase kinase-associated protein 1; circadian clock, ubiquitination, LRR, F-BOX, photolyase fold periods, nucleus, transcription; 2.70A {Homo sapiens} Probab=96.78 E-value=0.0021 Score=67.67 Aligned_cols=183 Identities=10% Similarity=-0.068 Sum_probs=93.0 Q ss_pred CCCCccccccccCCcchhhhHHHHHHhhc-cCCCccEEEccCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCcc Q FBpp0305286 143 FHASPELSLHFCPLHMVKLLETVLVLSNH-LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYI 221 (559) Q Consensus 143 l~~L~~L~l~~~~l~~~~~~~~~l~~i~~-~l~~L~~L~Ls~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l 221 (559) +++|+.|.+.++.++. ..+..+.. .+++|++|+|+++.--.-.++..++..+++|+.|+|++|.+++.. +..+ T Consensus 171 ~~~L~~L~L~~~~~~~-----~~l~~l~~~~~~~L~~L~L~~c~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~-l~~l 244 (428) T 4i6j_B 171 SKSLSSLKIDDTPVDD-----PSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDEL-LLAL 244 (428) T ss_dssp CTTCCEEECTTCCCCH-----HHHHHHHHHHTTTCCEEECCSCTTCCHHHHHHHHHHCTTCCEEEEEGGGCCHHH-HHHH T ss_pred CCCCCEEEcCCcccCH-----HHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHHhCCCCCEEeCcCCCcCHHH-HHHH Confidence 4556666666665442 12222222 477888888887642221223233466788888888877666321 1122 Q ss_pred CC--C-CccEEEee---cC-------cCCCcchhHH-----------------------hccCCCccEEeCCCCcCCC-- Q FBpp0305286 222 NK--L-SCKTIFLA---GN-------GLAKLSVDVI-----------------------RKMLPQLKNVHGCVQLGES-- 263 (559) Q Consensus 222 ~~--l-~L~~L~L~---~N-------~l~~~~~~~i-----------------------l~~lp~L~~Ldl~~N~~~~-- 263 (559) .. . +|++|+++ +| .++......+ +...+.|++|++... ... T Consensus 245 ~~~~~~~L~~L~l~~~~~~~~~~~~~~i~~~~~~~l~~~~~~L~~~l~~~~~~~~l~~~l~~~~~L~~L~~~~~-~~~~~ 323 (428) T 4i6j_B 245 SSEKHVRLEHLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPATHLYFGRS-VSKDV 323 (428) T ss_dssp HSSSSCCCSEEEEEEECCSSTTCCCCCCCHHHHHHHHHHCTTCEEEEEEECCTTCCTTSSSSCCCCCEEEESSC-CCHHH T ss_pred HccCCCCCcEEEEEEeecCcccccCCCCCHHHHHHHHhhCCCCeEEEEEEechHHHHHHhcCCCCceeeecccc-cCHHH Confidence 21 2 67888877 43 2221111111 233344557765332 221 Q ss_pred ch-hccCCCCcccccCCCCCCccchhhhhhhhcccccCcccccccccccc-ccceeeeecCC--cCcc-ccceeecCCcc Q FBpp0305286 264 TE-AVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKKYYD-DQAMFSLSVPV--QLNY-VYGYKLYNRNQ 338 (559) Q Consensus 264 ~~-~~~~lp~Lk~L~l~~~~l~~L~~n~L~~~~~~~d~~~~l~~L~~L~l-~N~l~sl~~~~--~~~~-~L~~L~ls~N~ 338 (559) .. ....+|+|+.|.++.+.... ....+..+. ..+++|+.|++ .+.+..-.+.. ..++ .|+.|+++++. T Consensus 324 l~~l~~~~~~L~~L~L~~~~~~~-~d~~l~~l~------~~~~~L~~L~l~~c~~~~~~~~~l~~~~~~~L~~L~l~~c~ 396 (428) T 4i6j_B 324 LGRVGMTCPRLVELVVCANGLRP-LDEELIRIA------ERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEV 396 (428) T ss_dssp HHHHHTTCTTCSEEEESCCCSSC-CHHHHHHHH------HHCTTCCEEEECSSCEEHHHHHHHHHHSGGGCSEEEEBGGG T ss_pred HHHHHHhCCCceEEEEecCCCCC-CcHHHHHHH------HhCccCCEEEecCCccchHHHHHHHHhCcccccEEEEeeeE Confidence 11 23467899999664322111 111121111 15789999999 55533221111 2345 89999999985 Q ss_pred c Q FBpp0305286 339 K 339 (559) Q Consensus 339 i 339 (559) . T Consensus 397 ~ 397 (428) T 4i6j_B 397 L 397 (428) T ss_dssp E T ss_pred e Confidence 3No 301>2lz0_A Uncharacterized protein; leucine rich repeat protein, structural genomics, unknown FU; NMR {Bacteroides capillosus} Probab=76.00 E-value=3.8 Score=33.83 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=16.0 Q ss_pred ccCCC-CccEEEeecCcCCCcchhHHhccCCCccEEeCCC Q FBpp0305286 220 YINKL-SCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCV 258 (559) Q Consensus 220 ~l~~l-~L~~L~L~~N~l~~~~~~~il~~lp~L~~Ldl~~ 258 (559) +|.++ +|+++.|..+ ++.+...+ |..+++|+.+.+.. T Consensus 15 aF~~C~~L~~i~lP~~-v~~Ig~~a-F~~C~~L~~i~~~~ 52 (100) T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGM-FSGCTALEKLILTG 52 (100) T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTS-STTCTTCCCEEECC T ss_pred hccCCCCCCEEEeCCC-ceEEhhhh-ccCCCCCCEEEEcC Confidence 44444 4444444433 33333332 44455555555443No 302>2lz0_A Uncharacterized protein; leucine rich repeat protein, structural genomics, unknown FU; NMR {Bacteroides capillosus} Probab=66.60 E-value=11 Score=30.95 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=36.8 Q ss_pred cCCcCCCCcCccccccCCCCCCEEeCCCCCCCCCCccCccCCC-CccEEEeecC Q FBpp0305286 182 SNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKL-SCKTIFLAGN 234 (559) Q Consensus 182 s~N~L~~l~~~~~l~~~l~~L~~L~Ls~N~L~~l~~l~~l~~l-~L~~L~L~~N 234 (559) ..+.++.+... .|.++.+|+.+.|..+ ++.+.. .+|.++ +|+++.+..+ T Consensus 4 ~~~~v~~I~~~--aF~~C~~L~~i~lP~~-v~~Ig~-~aF~~C~~L~~i~~~~~ 53 (100) T 2lz0_A 4 EGEPVVGMDKS--LFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE 53 (100) T ss_dssp CCCCCCSSCSC--TTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS T ss_pred cCccceEeHHH--hccCCCCCCEEEeCCC-ceEEhh-hhccCCCCCCEEEEcCC Confidence 45667777665 4578888999888876 777774 578888 8888888764