Query FBpp0290328 type=protein; loc=3L:join(7019749..7019898,7034972..7035038,7035170..7035315,7035744..7035881,7038005..7038151,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0290328; name=Mp-PE; parent=FBgn0260660,FBtr0301106; dbxref=REFSEQ:NP_788471,GB_protein:AAO41273,FlyBase:FBpp0290328,FlyBase:FBpp0088779,FlyBase_Annotation_IDs:CG33171-PC,FlyBase_Annotation_IDs:CG42543-PE,FlyMine:FBpp0290328,modMine:FBpp0290328; MD5=ec54bb982f3ab0d50461165e01a4e8cb; length=778; release=r6.06; species=Dmel; Match_columns 778 No_of_seqs 692 out of 2631 Neff 6.1 Searched_HMMs 16187 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF06482 Endostatin: Collagena 100.0 6.6E-75 4.1E-79 605.6 11.2 253 487-739 2-285 (286) 2 PF07588 DUF1554: Protein of u 99.7 7.8E-19 4.8E-23 164.7 8.1 126 579-714 2-133 (135) 3 PF01484 Col_cuticle_N: Nemato 88.5 0.061 3.8E-06 39.9 0.6 39 14-52 1-39 (50) 4 PF00386 C1q: C1q domain; Int 42.5 1.6 9.7E-05 37.9 -1.8 57 469-525 45-108 (127) 5 PF11267 DUF3067: Domain of un 36.7 7.4 0.00046 32.9 1.7 14 764-777 42-55 (98) 6 PF06609 TRI12: Fungal trichot 21.3 41 0.0025 36.8 4.7 46 8-57 531-576 (599) 7 PF14880 COX14: Cytochrome oxi 16.2 35 0.0022 25.6 1.9 30 10-39 15-44 (59) 8 PF11533 DUF3225: Protein of u 15.7 29 0.0018 30.4 1.4 19 512-530 99-117 (126) 9 PF07172 GRP: Glycine rich pro 14.4 62 0.0038 26.6 3.1 25 1-28 1-25 (95) 10 PF02676 TYW3: Methyltransfera 14.0 42 0.0026 31.8 2.2 54 722-776 42-98 (214)No 1>PF06482 Endostatin: Collagenase NC10 and Endostatin; InterPro: IPR010515 NC10 stands for Non-helical region 10 and is taken from P39059 from SWISSPROT. A mutation in this region in P39060 from SWISSPROT is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor []. Endostatin also binds a zinc ion near the N terminus; this is likely to be of structural rather than functional importance according to [].; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0031012 extracellular matrix; PDB: 1DY2_A 1DY1_A 1DY0_A 1KOE_A 3N3F_B 1BNL_D 3HSH_E 3HON_A. Probab=100.00 E-value=6.6e-75 Score=605.58 Aligned_cols=253 Identities=48% Similarity=0.873 Sum_probs=180.2 Q ss_pred CceeeccHHHHhhcCCCCCCCceEEeccCceEEEEEcCCceeeecCccccCCCCCCCCCC----CCCCc-ccccc----- Q FBpp0290328 487 GAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTTV----APSMR-FDLQS----- 556 (778) Q Consensus 487 ~~~~~~t~d~m~~~~~~sseGtl~yl~~~~el~vrv~~Gw~~i~lg~~~p~~~~~pp~~~----~p~~r-~~~~~----- 556 (778) ++++|+|+++|++.++...||+|+||++++||||||++|||+|+||+++|+....++.++ .++.. ..... T Consensus 2 GV~vf~T~~~Ml~~a~~~pEGTLayV~e~~eLYVRVrnGWRkV~LG~~ip~~~~~~~~~va~~~p~P~v~~~~~~~~~~~ 81 (286) T PF06482_consen 2 GVTVFRTYETMLATAHRVPEGTLAYVIEREELYVRVRNGWRKVQLGELIPIPSDTPDNEVASTQPPPVVSSPPQSSPPSS 81 (286) T ss_dssp -EEEESSHHHHHCHGGGS-TTEEEEETTTTEEEEEETTEEEEE-EEEEEE------------------------------ T ss_pred CcEEecCHHHHHhhcccCCCeEEEEEEecceEEEEecCCeeeeccCCcccCCCCcccccccccCCCCccccCcccccccc Confidence 578999999999999999999999999999999999999999999999998775532211 11111 00000 Q ss_pred -cCc---c----------------CCCCCCCCCCceEEEEcCCCCCCCCCCcccchHHHHHHhhhCCCCCceeEEEeccc Q FBpp0290328 557 -KNL---L----------------NSPPPLLNTPTLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSRV 616 (778) Q Consensus 557 -~~~---~----------------~~~~~~~~~~~l~l~al~~~~~G~l~Gi~GAD~~C~~~A~~~g~~gt~rA~Ls~~~ 616 (778) ... . +.....+....|||||||+|++|||+||+|||++||+|||++||.||||||||+++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~liAlN~P~~G~m~Gi~gAD~~C~~qAr~~gl~gtfRAfLSs~~ 161 (286) T PF06482_consen 82 HPRPPSTAPDPHYPPQPRRPPPPSPSAHTHHDDGPLHLIALNEPLSGNMRGIRGADFQCFRQARAAGLTGTFRAFLSSRL 161 (286) T ss_dssp ----------------------------S--TTS-EEEEE-SS-B-SBSSHHHHHHHHHHHHHHHTT--S-EEESS-BTT T ss_pred cCCcccCCCCccCCCCccccCCCCCccccccCCCceEEEEcCCCCCCCccccccccHHHHHHHHHcCCCCceEEeeeccc Confidence 000 0 00011233445999999999999999999999999999999999999999999999 Q ss_pred cCcccccCCCCC-CCccccCCCcEEeCCccccccCCCCcccCCCceeecCCCccCCCCCCCcceEEecCCCCcccccCcc Q FBpp0290328 617 QNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTY 695 (778) Q Consensus 617 ~~~~~~V~~~dr-~~p~vn~~g~vl~~~~~~l~~~~~~~~~~~~~i~~f~~~~~l~d~~~p~k~vW~Gs~~~g~~~~~~~ 695 (778) |||++||++.|| ++||||+||||||+||++||+++++.|..+++||||||+|||+|++||+|+|||||+++|++..++| T Consensus 162 qdL~~iV~~~dr~~~PivNlkgevLf~sw~~lf~g~~~~~~~~~~iySFdGr~v~~d~~wP~K~vWhGs~~~G~r~~~~~ 241 (286) T PF06482_consen 162 QDLYSIVRRADRDNVPIVNLKGEVLFNSWESLFSGSGGPFNPNAPIYSFDGRDVLTDPAWPQKMVWHGSDPRGRRLTDSY 241 (286) T ss_dssp B-GGGGS-GGGTSS--EE-TTS-EEES-HHHHTSSS-SB--TTS--BBTTS-BTTTSTTSSS-EEE--B-TTS-B-TTSB T ss_pred ccHhhhccHhhCCCCCeEeCcCCEeecCHHHHhCCCCCCCCCCCcEEeECCccccCCCCcceEEEEeCCCCCCccCCcCc Confidence 999999999999 8999999999999999999999888999999999999999999999999999999999999999999 Q ss_pred CCcCcCCCCCceeecccCCccccccccccccccCceEEEEeccc Q FBpp0290328 696 CDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDSKLIILCVEALS 739 (778) Q Consensus 696 C~~W~s~~~~~~G~as~~~~~~l~~~~~~~C~~~~~vlCvE~~~ 739 (778) |++|+|++.+++|+||+|++++||.|+.+||+++||||||||+. T Consensus 242 C~~Wrs~~~~~~G~As~l~~g~ll~q~~~sC~~~~ivLCiE~~~ 285 (286) T PF06482_consen 242 CEAWRSSDPAVTGQASSLQSGKLLDQQPYSCSNSFIVLCIENSF 285 (286) T ss_dssp HHHHB---TTSEEEEEEGGGTBSS--EEEETTS-BB-EEEESS- T ss_pred ccccccCCCCceEeeeecCCCCcccCCcccCCCceEEEEEeccc Confidence 99999999999999999999999999999999999999999974No 2>PF07588 DUF1554: Protein of unknown function (DUF1554); InterPro: IPR011448 This is a domain that occurs in 1-2 copies in a family of proteins identified in Leptospira interrogans and other bacteria. The function of the proteins is not known. Probab=99.75 E-value=7.8e-19 Score=164.72 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=98.0 Q ss_pred CCCCCCCCCcccchHHHHHHhhhC--CCCCceeEEEeccccCcccc-cCCCCCCCccccCCCcEEeCCccccccCCCC-c Q FBpp0290328 579 EPSTGDLQGIRGADFACYRQGRRA--GLLGTFKAFLSSRVQNLDTI-VRPADRDLPVVNTRGDVLFNSWKGIFNGQGG-F 654 (778) Q Consensus 579 ~~~~G~l~Gi~GAD~~C~~~A~~~--g~~gt~rA~Ls~~~~~~~~~-V~~~dr~~p~vn~~g~vl~~~~~~l~~~~~~-~ 654 (778) ..|+|||+||.|||++|++.+.+. +..++|||||++.+...+.+ +.++-. ....||||.+|.+|++. ++. + T Consensus 2 ~~~~GnlGGi~GADa~C~~d~~~p~~~~~~~yKAml~~~~~~~R~a~~t~n~~----~g~~DWVl~pnt~Y~r~-dgt~i 76 (135) T PF07588_consen 2 NTYNGNLGGISGADAKCNADANKPSPGGGGTYKAMLVDGSNSTRRACVTANCG----DGQIDWVLKPNTTYYRS-DGTTI 76 (135) T ss_pred ccccCcccchhhHhHHHHcCCCCCCCCCCcCeEEEEEcCccccceeecCCCCC----CCcccceecCCceEEec-CCCEE Confidence 368999999999999999988884 46789999999976522222 222222 22789999999999998 555 6 Q ss_pred ccCCCc-eeecCCCccCCCCCCC-cceEEecCCCCcccccCccCCcCcCCCCCceeecccCC Q FBpp0290328 655 FSQAPR-IYSFSGKNVMTDSTWP-MKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLD 714 (778) Q Consensus 655 ~~~~~~-i~~f~~~~~l~d~~~p-~k~vW~Gs~~~g~~~~~~~C~~W~s~~~~~~G~as~~~ 714 (778) |+++.. ||+|+ |++++-. .+.||||++.+++... .+|++|+++...++|.....+ T Consensus 77 ~tTn~~glf~f~----l~~~i~~~~~~~WTGl~~~Wt~~~-~~C~~Wt~~s~~~~G~~G~~n 133 (135) T PF07588_consen 77 FTTNSNGLFDFP----LSNPISGTSGTIWTGLNSDWTTAT-NNCNNWTSGSSGVTGAYGSSN 133 (135) T ss_pred EecCCCceEccc----ccceecCCCccEEEeECCCCeeCC-CcccCCcCCCCcccccccccc Confidence 766766 99997 5555533 7999999999988774 899999999988888776644No 3>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle Probab=88.46 E-value=0.061 Score=39.90 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHhhhcccccccccccchhhHHHHhhhc Q FBpp0290328 14 TALILFFLLGIVLVTGSTKGWFNPNRYNGERVAARIQAT 52 (778) Q Consensus 14 ~~~~~~sivail~~~~~ip~~~~~~~~~~e~~~~~~~~~ 52 (778) |.++++|++++++|++++|.+++.....++.+..+.+.+ T Consensus 1 y~a~~~s~~~i~~~l~~~~~i~~~i~~~~~e~~~e~~~f 39 (50) T PF01484_consen 1 YVAIAFSTLSIISCLFTIPMIYNDIQEFQEELEDEMDEF 39 (50) T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 467889999999999999999987766655555555444No 4>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 4OUS_A 1C3H_C 1C28_C .... Probab=42.46 E-value=1.6 Score=37.85 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=36.1 Q ss_pred CCCCcccC-----CCCCceeeecC-ceeeccHHHHhhcC-CCCCCCceEEeccCceEEEEEcCC Q FBpp0290328 469 EEPYFSAS-----SSNMNMKIVPG-AVTFQNIDEMTKKS-ALNPPGTLAYITEEEALLVRVNKG 525 (778) Q Consensus 469 ~~P~fs~s-----~s~~~v~iv~~-~~~~~t~d~m~~~~-~~sseGtl~yl~~~~el~vrv~~G 525 (778) +.|+|+.. .....+.|+++ ..+........... +..+..++++|..+|+||||+..+ T Consensus 45 G~Y~f~~~~~~~~~~~~~v~l~~n~~~~~~~~~~~~~~~~~~~s~~~~l~L~~GD~v~v~~~~~ 108 (127) T PF00386_consen 45 GVYFFSFTVCTSGSGNLRVELRKNGNSVLSVYSSSTSNSSDTLSRSAVLELNAGDTVWVRLNQG 108 (127) T ss_dssp EEEEEEEEEESEECCEEEEEEEETTEEEEEEEECSBTTBEEEEEEEEEEEE-TT-EEEEEEEEC T ss_pred CeEEEEEEEEecCCCceEEEEEecCcceeeeeecCCCCceeEEeeEEEEEeCCCCEEEEEEEeC Confidence 56776642 34466777777 33344333333333 567778899999999999999955No 5>PF11267 DUF3067: Domain of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A. Probab=36.74 E-value=7.4 Score=32.87 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.4 Q ss_pred cChHHHHHHHHhhh Q FBpp0290328 764 KTADEYAAHLENLL 777 (778) Q Consensus 764 ~~~~~~~~~~~~~~ 777 (778) +||+||.+||+.+. T Consensus 42 ltE~eY~~hL~~ia 55 (98) T PF11267_consen 42 LTEEEYLEHLDAIA 55 (98) T ss_dssp S-HHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH Confidence 69999999999863No 6>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. Probab=21.29 E-value=41 Score=36.85 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=37.8 Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcccccccccccchhhHHHHhhhcccccc Q FBpp0290328 8 RAKLVITALILFFLLGIVLVTGSTKGWFNPNRYNGERVAARIQATDIFDA 57 (778) Q Consensus 8 ~~~lv~~~~~~~sivail~~~~~ip~~~~~~~~~~e~~~~~~~~~~~~~~ 57 (778) ..+.|-+++++|.+++++++|++- +..+++.++++..++..+.-+. T Consensus 531 afr~V~~~siaFg~va~i~a~f~~----d~~~~mt~~Va~~l~~~~~~~~ 576 (599) T PF06609_consen 531 AFRYVYLASIAFGVVAIIAAFFLK----DIDKYMTNHVAVRLEDRKEADK 576 (599) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----CcHHhhhhhhhHhHhccccccc Confidence 347788899999999999999875 6888999999999887754443No 7>PF14880 COX14: Cytochrome oxidase c assembly; InterPro: IPR029208 COX14 plays an essential role in cytochrome oxidase assembly. The COX14 product is a low-molecular weight membrane protein of mitochondria, but it is not a subunit of cytochrome oxidase []. Orthology-prediction methods have identified the vertebrate C12orf62 orthologues to be orthologues of the yeast COX14 []. Probab=16.18 E-value=35 Score=25.56 Aligned_cols=30 Identities=23% Similarity=0.229 Sum_probs=23.1 Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccc Q FBpp0290328 10 KLVITALILFFLLGIVLVTGSTKGWFNPNR 39 (778) Q Consensus 10 ~lv~~~~~~~sivail~~~~~ip~~~~~~~ 39 (778) +++++++++|++++.+++...+=.++..|+ T Consensus 15 R~tv~~Lig~T~~~g~~~~~~~~~~~~~~r 44 (59) T PF14880_consen 15 RGTVLGLIGFTVYGGGLTVYTVYDYMRYNR 44 (59) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 677899999999999998888744444443No 8>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2RCD_B 2OWP_A. Probab=15.73 E-value=29 Score=30.41 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=15.8 Q ss_pred eccCceEEEEEcCCceeee Q FBpp0290328 512 ITEEEALLVRVNKGWQYIA 530 (778) Q Consensus 512 l~~~~el~vrv~~Gw~~i~ 530 (778) +-.+.|+|+|+..|||=|+ T Consensus 99 ~GrQsQtW~R~~~GWkVva 117 (126) T PF11533_consen 99 IGRQSQTWVRFPDGWKVVA 117 (126) T ss_dssp EEEEEEEEEEETTEEEEEE T ss_pred eeEEEEEEEecCCCEEEEE Confidence 3456899999999999764No 9>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress []. Probab=14.35 E-value=62 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=0.0 Q ss_pred CcceeehhhHHHHHHHHHHHHHHHHHhh Q FBpp0290328 1 MAMVISTRAKLVITALILFFLLGIVLVT 28 (778) Q Consensus 1 ~~~~~s~~~~lv~~~~~~~sivail~~~ 28 (778) || |+.+.|++..+.+|.+|++.+.+ T Consensus 1 Ma---SK~~llL~llLA~~LlisSevaa 25 (95) T PF07172_consen 1 MA---SKAFLLLGLLLAAVLLISSEVAA 25 (95) T ss_pred Cc---hhHHHHHHHHHHHHHHHHHHHHhNo 10>PF02676 TYW3: Methyltransferase TYW3; InterPro: IPR003827 The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis []. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3'-position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner [].; PDB: 1TLJ_A 2IT3_B 2IT2_A 2DRV_A 2DVK_A 2QG3_B. Probab=13.96 E-value=42 Score=31.83 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=0.0 Q ss_pred cccccccCceEEEEecccHHHHhhhcccCCCCCCCCC---chhhccChHHHHHHHHhh Q FBpp0290328 722 KRQSCDSKLIILCVEALSQDRKRKKREIGDGSSHGES---ESREFKTADEYAAHLENL 776 (778) Q Consensus 722 ~~~~C~~~~~vlCvE~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 776 (778) +++|||.+.+|+| |......+........+...+-. .+|+-++++|..+-|.+. T Consensus 42 TTSSCSGRI~vf~-eg~~~~~~~~~~~~~~~~k~gg~wL~vsH~~v~~~e~~~~l~~~ 98 (214) T PF02676_consen 42 TTSSCSGRISVFL-EGSKSDSASESDAKSGGKKKGGKWLFVSHDPVTEDEVLEALRKA 98 (214) T ss_dssp EEEEES-EEEEE-------------EESSTTSCCC-EEEEEESS---HHHHHHHHTT- T ss_pred EecccccceEEEe-ecccccccccccCCCCCCCCCCEEEEEECCCCCHHHHHHHHhcc