Query FBpp0290335 type=protein; loc=3L:join(7012190..7012289,7012739..7013277,7033869..7033964,7034503..7034538,7034635..7034703,7035214..7035315,7035744..7035881,7038005..7038151,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0290335; name=Mp-PL; parent=FBgn0260660,FBtr0301113; dbxref=REFSEQ:NP_001163363,GB_protein:ACZ94634,FlyBase:FBpp0290335,FlyBase_Annotation_IDs:CG42543-PL,FlyMine:FBpp0290335,modMine:FBpp0290335; MD5=00c3e475bde6a646aff88c7d387b1783; length=971; release=r6.06; species=Dmel; Match_columns 971 No_of_seqs 754 out of 2675 Neff 6.3 Searched_HMMs 16187 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF06482 Endostatin: Collagena 100.0 3.4E-76 2.1E-80 629.4 11.9 254 679-932 1-285 (286) 2 PF07588 DUF1554: Protein of u 99.7 3.4E-18 2.1E-22 164.1 8.2 126 772-907 2-133 (135) 3 PF02210 Laminin_G_2: Laminin 98.5 9.6E-07 5.9E-11 81.3 14.2 114 98-221 4-124 (127) 4 PF13385 Laminin_G_3: Concanav 98.3 4.7E-06 2.9E-10 78.1 14.2 129 86-227 17-147 (152) 5 PF00354 Pentaxin: Pentaxin fa 97.6 0.00055 3.4E-08 68.6 15.4 126 85-225 24-157 (194) 6 PF00054 Laminin_G_1: Laminin 97.5 0.00073 4.5E-08 62.7 13.7 115 98-222 4-126 (131) 7 PF02973 Sialidase: Sialidase, 97.4 0.0013 7.8E-08 65.2 15.0 135 85-226 30-176 (189) 8 PF07953 Toxin_R_bind_N: Clost 90.9 0.94 5.8E-05 43.9 11.4 124 51-186 18-159 (195) 9 PF06439 DUF1080: Domain of Un 88.1 0.15 9.2E-06 48.9 3.3 98 85-186 52-157 (185) 10 PF14099 Polysacc_lyase: Polys 68.7 10 0.00065 36.4 9.6 77 101-180 84-172 (212) 11 PF16346 DUF4975: Domain of un 66.8 34 0.0021 32.5 12.5 112 64-181 37-149 (176) 12 PF00722 Glyco_hydro_16: Glyco 48.9 76 0.0047 28.8 11.7 31 152-182 106-136 (177) 13 PF16323 DUF4959: Domain of un 43.7 1.6E+02 0.01 28.5 14.5 20 4-23 1-20 (225) 14 PF02057 Glyco_hydro_59: Glyco 41.9 1E+02 0.0063 34.8 12.9 49 150-204 605-653 (669) 15 PF08787 Alginate_lyase2: Algi 35.8 1.3E+02 0.0081 29.1 11.5 93 89-182 86-190 (236) 16 PF00337 Gal-bind_lectin: Gala 31.8 1.7E+02 0.01 25.1 11.8 103 79-182 4-109 (134) 17 PF11267 DUF3067: Domain of un 30.1 11 0.00069 32.5 1.8 14 957-970 42-55 (98) 18 PF07622 DUF1583: Protein of u 21.5 34 0.0021 36.6 4.0 37 150-186 83-119 (411)No 1>PF06482 Endostatin: Collagenase NC10 and Endostatin; InterPro: IPR010515 NC10 stands for Non-helical region 10 and is taken from P39059 from SWISSPROT. A mutation in this region in P39060 from SWISSPROT is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor []. Endostatin also binds a zinc ion near the N terminus; this is likely to be of structural rather than functional importance according to [].; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0031012 extracellular matrix; PDB: 1DY2_A 1DY1_A 1DY0_A 1KOE_A 3N3F_B 1BNL_D 3HSH_E 3HON_A. Probab=100.00 E-value=3.4e-76 Score=629.39 Aligned_cols=254 Identities=48% Similarity=0.876 Sum_probs=180.5 Q ss_pred CeeEEecChHHHhhccCCCCCcceEEecccceEEEEEcCCceEeeccccccCCCCCCCCCC----CCCCc-ccccc---- Q FBpp0290335 679 PGAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTTV----APSMR-FDLQS---- 749 (971) Q Consensus 679 p~~~~~~~~~~m~~~~~~~~~Gtl~y~~~~~~l~vrv~~g~~~I~lg~~~p~~~~~~~~~~----~~~~~-~~~~~---- 749 (971) .||++|+|+++|+++++..+||||+||+|+++|||||++|||+|+||.++|++...++..+ .++.. ..... T Consensus 1 sGV~vf~T~~~Ml~~a~~~pEGTLayV~e~~eLYVRVrnGWRkV~LG~~ip~~~~~~~~~va~~~p~P~v~~~~~~~~~~ 80 (286) T PF06482_consen 1 SGVTVFRTYETMLATAHRVPEGTLAYVIEREELYVRVRNGWRKVQLGELIPIPSDTPDNEVASTQPPPVVSSPPQSSPPS 80 (286) T ss_dssp --EEEESSHHHHHCHGGGS-TTEEEEETTTTEEEEEETTEEEEE-EEEEEE----------------------------- T ss_pred CCcEEecCHHHHHhhcccCCCeEEEEEEecceEEEEecCCeeeeccCCcccCCCCcccccccccCCCCccccCccccccc Confidence 3799999999999999999999999999999999999999999999999998766542111 11100 00000 Q ss_pred --cCcc--------------CCC-----CCCCCCCceEEEEccCCCCCCCCCcccchhhhHHHhhhcCCCCceeEEEecc Q FBpp0290335 750 --KNLL--------------NSP-----PPLLNTPTLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSR 808 (971) Q Consensus 750 --~~~~--------------~~~-----~~~~~~~~l~l~a~~~~~~g~~~Gi~GaD~~C~~~a~~~g~~gt~rA~Ls~~ 808 (971) .... ..+ ........|||||||+|++|||+||+|||++||+|||++|+.||||||||++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~liAlN~P~~G~m~Gi~gAD~~C~~qAr~~gl~gtfRAfLSs~ 160 (286) T PF06482_consen 81 SHPRPPSTAPDPHYPPQPRRPPPPSPSAHTHHDDGPLHLIALNEPLSGNMRGIRGADFQCFRQARAAGLTGTFRAFLSSR 160 (286) T ss_dssp -----------------------------S--TTS-EEEEE-SS-B-SBSSHHHHHHHHHHHHHHHTT--S-EEESS-BT T ss_pred ccCCcccCCCCccCCCCccccCCCCCccccccCCCceEEEEcCCCCCCCccccccccHHHHHHHHHcCCCCceEEeeecc Confidence 0000 000 0122333499999999999999999999999999999999999999999999 Q ss_pred ccCcccccCCCCC-CCccccCCCcEEecCccccccCCCCcccCCCceeecCCCccCCCCCCCcceEEecCCCCcccccCc Q FBpp0290335 809 VQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDT 887 (971) Q Consensus 809 ~~~~~~~v~~~dr-~~p~vn~~g~vl~~~~~~l~~~~~~~~~~~~~i~~f~~~~~l~~~~~~~k~vW~Gs~~~g~~~~~~ 887 (971) +|||++||++.|| ++||||+||||||+||++||+++++.|+.+++||||||+|||+|++||+|+|||||+++|+|..++ T Consensus 161 ~qdL~~iV~~~dr~~~PivNlkgevLf~sw~~lf~g~~~~~~~~~~iySFdGr~v~~d~~wP~K~vWhGs~~~G~r~~~~ 240 (286) T PF06482_consen 161 LQDLYSIVRRADRDNVPIVNLKGEVLFNSWESLFSGSGGPFNPNAPIYSFDGRDVLTDPAWPQKMVWHGSDPRGRRLTDS 240 (286) T ss_dssp TB-GGGGS-GGGTSS--EE-TTS-EEES-HHHHTSSS-SB--TTS--BBTTS-BTTTSTTSSS-EEE--B-TTS-B-TTS T ss_pred cccHhhhccHhhCCCCCeEeCcCCEeecCHHHHhCCCCCCCCCCCcEEeECCccccCCCCcceEEEEeCCCCCCccCCcC Confidence 9999999999999 899999999999999999999998999999999999999999999999999999999999999999 Q ss_pred ccCcccCCCCCceeecccCCccccccccccccCCCceEEEEeccc Q FBpp0290335 888 YCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDSKLIILCVEALS 932 (971) Q Consensus 888 ~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C~~~~~~lCve~~~ 932 (971) ||++|+|++.+++|+||+|++++||.|+.+||+++||||||||+. T Consensus 241 ~C~~Wrs~~~~~~G~As~l~~g~ll~q~~~sC~~~~ivLCiE~~~ 285 (286) T PF06482_consen 241 YCEAWRSSDPAVTGQASSLQSGKLLDQQPYSCSNSFIVLCIENSF 285 (286) T ss_dssp BHHHHB---TTSEEEEEEGGGTBSS--EEEETTS-BB-EEEESS- T ss_pred cccccccCCCCceEeeeecCCCCcccCCcccCCCceEEEEEeccc Confidence 999999999999999999999999999999999999999999973No 2>PF07588 DUF1554: Protein of unknown function (DUF1554); InterPro: IPR011448 This is a domain that occurs in 1-2 copies in a family of proteins identified in Leptospira interrogans and other bacteria. The function of the proteins is not known. Probab=99.72 E-value=3.4e-18 Score=164.12 Aligned_cols=126 Identities=21% Similarity=0.331 Sum_probs=97.3 Q ss_pred CCCCCCCCCcccchhhhHHHhhhc--CCCCceeEEEeccccCcccc-cCCCCCCCccccCCCcEEecCccccccCCCC-c Q FBpp0290335 772 EPSTGDLQGIRGADFACYRQGRRA--GLLGTFKAFLSSRVQNLDTI-VRPADRDLPVVNTRGDVLFNSWKGIFNGQGG-F 847 (971) Q Consensus 772 ~~~~g~~~Gi~GaD~~C~~~a~~~--g~~gt~rA~Ls~~~~~~~~~-v~~~dr~~p~vn~~g~vl~~~~~~l~~~~~~-~ 847 (971) ..|+|||+||.|||++|++.+.+. +..++|||||++.+...+.+ +.++-. ....||||.+|.+|++. ++. + T Consensus 2 ~~~~GnlGGi~GADa~C~~d~~~p~~~~~~~yKAml~~~~~~~R~a~~t~n~~----~g~~DWVl~pnt~Y~r~-dgt~i 76 (135) T PF07588_consen 2 NTYNGNLGGISGADAKCNADANKPSPGGGGTYKAMLVDGSNSTRRACVTANCG----DGQIDWVLKPNTTYYRS-DGTTI 76 (135) T ss_pred ccccCcccchhhHhHHHHcCCCCCCCCCCcCeEEEEEcCccccceeecCCCCC----CCcccceecCCceEEec-CCCEE Confidence 368999999999999999988874 46789999999976522222 222222 22789999999999998 555 7 Q ss_pred ccCCCc-eeecCCCccCCCCCC-CcceEEecCCCCcccccCcccCcccCCCCCceeecccCC Q FBpp0290335 848 FSQAPR-IYSFSGKNVMTDSTW-PMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLD 907 (971) Q Consensus 848 ~~~~~~-i~~f~~~~~l~~~~~-~~k~vW~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~ 907 (971) |+++.. ||+|+ |++++- ..+.+|||++.+++... .+|++|+++....+|.....+ T Consensus 77 ~tTn~~glf~f~----l~~~i~~~~~~~WTGl~~~Wt~~~-~~C~~Wt~~s~~~~G~~G~~n 133 (135) T PF07588_consen 77 FTTNSNGLFDFP----LSNPISGTSGTIWTGLNSDWTTAT-NNCNNWTSGSSGVTGAYGSSN 133 (135) T ss_pred EecCCCceEccc----ccceecCCCccEEEeECCCCeeCC-CcccCCcCCCCcccccccccc Confidence 777766 99997 554443 48999999999987774 899999999988777766544No 3>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3SH4_A 3SH5_A 2C5D_A 4RA0_A 1H30_A .... Probab=98.48 E-value=9.6e-07 Score=81.31 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=83.3 Q ss_pred CCCCceEEEEEeCCCCeEEEEEEEcccccCceeEEEEEEecCCCcceeEeeecccCCCccceEEEEEEeCCeeEEEEccc Q FBpp0290335 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (971) Q Consensus 98 ~~~~g~LfsV~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~l~dg~WHrlaLsV~g~~VtLyvDC~ 177 (971) ....+.||.+.+. +...+|.|.|.... +.|.|..... ......+...+.|++||+|.|..+.+.++|.|||. T Consensus 4 ~~~~glLl~~~~~-~~~~~~~l~l~~g~-----l~~~~~~~~~--~~~~~~~~~~~~dg~wh~v~v~~~~~~~~l~vd~~ 75 (127) T PF02210_consen 4 RQPNGLLLYIGSQ-NSSDFLALELRNGR-----LVFRYNLGGE--EEISLFSPRNVNDGEWHSVSVRRSGNNVTLSVDDN 75 (127) T ss_dssp SSSSEEEEEEEES-TTSEEEEEEEETTE-----EEEEEESSSS--EEEEEESSSCCTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCEEEEEEcCC-CCCeEEEEEEECCE-----EEEEEEeecc--ceeeccccccccchheeeeeeeeeeeeeeeccCCc Confidence 5667899999997 45689999998542 7777765521 12333446778899999999999999999999999 Q ss_pred ccceeeeccCCcccccCCCceEEEeccCCcc-------CcccceeeeeeEE Q FBpp0290335 178 LRNTTLVTREPIELVFDSASTLYIGQAGSII-------GGKFEGYLEKINV 221 (971) Q Consensus 178 ~~~t~~l~r~p~~l~~~~~~~l~IGq~g~~~-------~~~F~G~LQ~L~I 221 (971) ............. +.....+|||...... ...|+|-|++|+| T Consensus 76 ~~~~~~~~~~~~~--~~~~~~l~iGg~~~~~~~~~~~~~~~F~GCi~~l~i 124 (127) T PF02210_consen 76 RVMSSPSSSSSQQ--LNFDGSLYIGGIPNDFSSPGSDTQPGFVGCIRDLKI 124 (127) T ss_dssp EEEEEESSSTTHC--BESEEEEEESSTTTTCTTTTSSTTSB-EEEEEEEEE T ss_pred ceeeeccCCCccc--cccCCcEEECcccCccccccccCCCCCEEEECeEEE Confidence 9877766553322 3445669998763221 3579999999987No 4>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 1N1Y_A 1MZ6_A 1MZ5_A 2A75_A 1N1S_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A 2AGS_A .... Probab=98.30 E-value=4.7e-06 Score=78.09 Aligned_cols=129 Identities=17% Similarity=0.335 Sum_probs=79.8 Q ss_pred CceEEEEEEeecCCCCc--eEEEEEeCCCCeEEEEEEEcccccCceeEEEEEEecCCCcceeEeeecccCCCccceEEEE Q FBpp0290335 86 YEFAILITFRQSSLKGG--YLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIAL 163 (971) Q Consensus 86 ~eFSilaT~R~~~~~~g--~LfsV~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~l~dg~WHrlaL 163 (971) .+|+|.+++|+...... .||. ...++ ..+.|.+... + .+.|.+....... ........+..++||+|++ T Consensus 17 ~~~Ti~~w~k~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~--~--~~~~~~~~~~~~~--~~~~~~~~~~~~~W~~va~ 87 (152) T PF13385_consen 17 DDFTISFWVKPDSPSSSDQFIFS--SSNDN-SGFSLFIDSS--G--SLQFRVSNGNGTW--YSVTSDTPLSPGQWHHVAI 87 (152) T ss_dssp SSEEEEEEEEESS-SSSEEEEEE--SCCTS-EEEEEEEETT--S--CEEEEECCSECCS--CEEE-CS---TT-EEEEEE T ss_pred CCEEEEEEEEECCCCCcceEEEE--eCCCC-CEEEEEEeCC--C--EEEEEEECCCCce--EEEEecccccCCcEEEEEE Confidence 39999999999766653 3444 32233 6777777432 2 3666665443211 2333455667899999999 Q ss_pred EEeCCeeEEEEcccccceeeeccCCcccccCCCceEEEeccCCccCcccceeeeeeEEecCCcc Q FBpp0290335 164 QVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDA 227 (971) Q Consensus 164 sV~g~~VtLyvDC~~~~t~~l~r~p~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~L~I~~dp~~ 227 (971) .+.+..++||||.+++.+...... ........++||... .....|.|.|.+|+|+-.+.. T Consensus 88 ~~~~~~~~~yvnG~~~~~~~~~~~---~~~~~~~~~~iG~~~-~~~~~f~G~i~~v~i~~~alt 147 (152) T PF13385_consen 88 TYDGGTVRLYVNGKLVGSSTNTGN---FSSSSSSPLTIGASS-WGSRYFKGYIDEVRIYDRALT 147 (152) T ss_dssp EEETTEEEEEETTEEEEEETCES----SSTCCCCEEEESS-T-TTT---EEEEEEEEEESS--- T ss_pred EEccceeeeEEcceEEEEEEeeec---ccCCCceeEEEeecC-CCCCceEEEEEEEEEECCcCC Confidence 999999999999999887754442 112456789999874 335689999999999865543No 5>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 4AVV_C 4AYU_A 4AVT_J 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B .... Probab=97.60 E-value=0.00055 Score=68.58 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=79.8 Q ss_pred CCceEEEEEEeecCCCCceEEEEEeCCCCeEEEEEEEcccccCceeEEEEEEecCCCcceeEeeecccCCCccceEEEEE Q FBpp0290335 85 LYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQ 164 (971) Q Consensus 85 l~eFSilaT~R~~~~~~g~LfsV~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~l~dg~WHrlaLs 164 (971) |.+|+|-+.+|....+.++|||..... ....|-+-.+.. + .+.|+. .+ ....|.+...+.+||++.+. T Consensus 24 L~~fTvC~w~~~~~~~~~tifSYa~~~-~~nell~~~~~~--~--~~~l~i--~g-----~~~~~~~~~~~~~WhhvC~t 91 (194) T PF00354_consen 24 LSAFTVCFWVRTDLSNSGTIFSYATSS-NDNELLLFISSN--G--GFELYI--NG-----SSISFSVSPSDLQWHHVCVT 91 (194) T ss_dssp BSEEEEEEEEEESGSS-EEEEEEEETT-EEEEEEEEEETT--T--EEEEEE--TT-----EEEEEEECCECSSEEEEEEE T ss_pred cccEEEEEEEEEcCCCceEEEEeecCC-CCcceEEEEeCC--C--eEEEEE--CC-----cEEEEecccCCCCCEEEEEE Confidence 569999999999888889999988863 323333322221 1 233332 22 22334555566799999997 Q ss_pred Ee--CCeeEEEEcccccceeeeccCCcccccCCCceEEEeccCC------ccCcccceeeeeeEEecCC Q FBpp0290335 165 VL--SDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS------IIGGKFEGYLEKINVYGNP 225 (971) Q Consensus 165 V~--g~~VtLyvDC~~~~t~~l~r~p~~l~~~~~~~l~IGq~g~------~~~~~F~G~LQ~L~I~~dp 225 (971) -. ...+.||+|-+...+..+.+. ..+..++.|.|||.-. .....|.|+|.+|+|-... T Consensus 92 W~s~~G~~~ly~dG~~~~~~~~~~g---~~i~~gG~~vlGQeQd~~gGgf~~~qsf~G~is~~~iWd~v 157 (194) T PF00354_consen 92 WDSSTGSWQLYVDGERVSSGGLAKG---YSIPPGGTLVLGQEQDSYGGGFDSSQSFVGEISDVNIWDRV 157 (194) T ss_dssp EETTTTEEEEEETTEEEEEEESSTT-----B-SSEEEEESS-BSBTTBTCSGGGB--EEEEEEEEESS- T ss_pred cccCCccEEEEeCCEeeeeeeccCC---ceECCCCEEEEEEcccCCCCccCcccccceEEeeEEEEeee Confidence 65 479999999988766555442 2357789999999621 1235799999999996544No 6>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 2C5D_A 4RA0_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A 1F5F_A .... Probab=97.49 E-value=0.00073 Score=62.67 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=74.5 Q ss_pred CCCCceEEEEEeCCCCeEEEEEEEcccccCceeEEEEEEecCCCcceeEeeecccCCCccceEEEEEEeCCeeEEEEccc Q FBpp0290335 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (971) Q Consensus 98 ~~~~g~LfsV~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~l~dg~WHrlaLsV~g~~VtLyvDC~ 177 (971) ....+.||-.-+. +...+|.|.|..-+ +.|.|...++ ...+.....+.|++||+|.+......++|.||.+ T Consensus 4 ~~~~GlLly~~~~-~~~df~~l~L~~G~-----l~~~~~~G~g---~~~~~~~~~i~dg~wh~i~~~r~~~~~~l~Vd~~ 74 (131) T PF00054_consen 4 TSPNGLLLYLGSK-DESDFLALELVNGR-----LEFRYNLGGG---PVTLQSPQKINDGKWHTIEVERNGRNGSLQVDGE 74 (131) T ss_dssp SSSSEEEEEEESS-TTSSEEEEEEETTE-----EEEEEESSSE---EEEEEECSETTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCceEEECCcC-CCCCEEEEEeeCCE-----EEEEEecCCc---ceeeccCccccCCCeEEEEeeccceeEEEEEcCc Confidence 4466788855544 44578999986552 7888865543 2344445558899999999999999999999988 Q ss_pred ccceeeeccCCcccccCCCceEEEeccC-C-------ccCcccceeeeeeEEe Q FBpp0290335 178 LRNTTLVTREPIELVFDSASTLYIGQAG-S-------IIGGKFEGYLEKINVY 222 (971) Q Consensus 178 ~~~t~~l~r~p~~l~~~~~~~l~IGq~g-~-------~~~~~F~G~LQ~L~I~ 222 (971) +..+...+..... .++....||||--. . .....|.|=|++|+|- T Consensus 75 ~~~~~~~~~~~~~-~l~~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in 126 (131) T PF00054_consen 75 EPVTGSSPSGATS-QLDFSDPLYVGGLPSSSSPPRIFVSSPGFKGCIRDLKIN 126 (131) T ss_dssp EEEEEEECSSSSS-TEEECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEET T ss_pred cceeEEeeccccc-ccccCCcEEEeCCCchhccccccCcCCCeeEEEEEeEEC Confidence 7733322221111 12334459998543 0 1113589999999873No 7>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 4FQ4_A 4FPJ_A 4FPO_B 4FOW_A 2VW2_A 4FPL_A 4FPE_A 4FPC_A 2VW0_A 4FOY_A .... Probab=97.42 E-value=0.0013 Score=65.24 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=85.0 Q ss_pred CCceEEEEEEeecCCC-CceEEEEEeCCCCeEEEEEEEcccccCceeEEEEEEecCCCcceeEeee-cccCCCccce--- Q FBpp0290335 85 LYEFAILITFRQSSLK-GGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWN--- 159 (971) Q Consensus 85 l~eFSilaT~R~~~~~-~g~LfsV~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF-~v~l~dg~WH--- 159 (971) |.+++|++.||+...+ -..||+|.+......+|-|-+... .+-+..++.+......+... ...+..++|+ T Consensus 30 L~~gTI~v~Fk~t~~~~~qsLfsiSns~~~n~yF~lyi~~~-----~lG~E~R~~~~~~~y~~~~~~~a~v~~~~~~~~~ 104 (189) T PF02973_consen 30 LEEGTIVVEFKPTSKSGIQSLFSISNSKKGNEYFHLYIRNN-----TLGFELRDQSGNQFYLSSRPAPASVWGGYWNSVT 104 (189) T ss_dssp -SSEEEEEEEEESSSSSEEEEEEEE-SSTTTEEEEEEEETT-----EEEEEEEETTTTBCEEEEET-SSB--TECTCEEE T ss_pred ccceEEEEEEecCCCCceeEEEEecCCCCCCceEEEEEECC-----EEEEEEccCCCCccccccccchhhccccccCCce Confidence 6699999999995555 445999999887789999999775 28888888775432233222 2566678997 Q ss_pred --EEEEEEe--CCeeEEEEcc-cccceeeeccCCcccccCCCceEEEeccCCccC--cccceeeeeeEEecCCc Q FBpp0290335 160 --SIALQVL--SDKVSFYYDC-ELRNTTLVTREPIELVFDSASTLYIGQAGSIIG--GKFEGYLEKINVYGNPD 226 (971) Q Consensus 160 --rlaLsV~--g~~VtLyvDC-~~~~t~~l~r~p~~l~~~~~~~l~IGq~g~~~~--~~F~G~LQ~L~I~~dp~ 226 (971) .++|.+. ...+.||+|- -.+.+....++..+ +..--.++||...+... =.|.|.|.+|+||-.+- T Consensus 105 ~ntva~~ad~~~~~yklY~NG~l~~~s~~~~~Fi~d--i~~~n~~~lG~t~R~~~~~y~F~G~I~n~~iYn~aL 176 (189) T PF02973_consen 105 FNTVAFVADSPNKGYKLYVNGVLSVFSKKSGKFISD--IPGLNSVQLGGTKRAGSNAYGFNGTIDNLKIYNRAL 176 (189) T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEESTSS-GGG--STT--EEEESSEEETTEEES--EEEEEEEEEESS-- T ss_pred EEEEEEeecCCCceEEEEEccEEEEEecchhhHhhc--CCCCceEEEeeeEeCCCcccCcccEEEEEEEECCcC Confidence 6677775 5799999999 21222233344222 23344688886532221 25899999999997653No 8>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains []. This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif []. The role of this domain in receptor binding appears to be indirect. ; GO: 0004222 metalloendopeptidase activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 3RSJ_B 3FUQ_A 1DFQ_A 1A8D_A 1FV3_A 1YXW_A 1DLL_A 1D0H_A 1YYN_A 1FV2_A .... Probab=90.94 E-value=0.94 Score=43.89 Aligned_cols=124 Identities=10% Similarity=0.183 Sum_probs=71.7 Q ss_pred CcEEEeccCCCCcceEecCCcc---ccCCccccCCCCCC-ceEEEEEEeecCCC-------CceEEEEEeCCCCeEEEEE Q FBpp0290335 51 AGIEFGEAEDGFPAFRFLQTAD---VKSPYRMLLPEKLY-EFAILITFRQSSLK-------GGYLFSVVNPLDTVVQLGV 119 (971) Q Consensus 51 ~GV~~v~G~d~~pAy~f~~~a~---l~~pt~~lfP~~l~-eFSilaT~R~~~~~-------~g~LfsV~~~~~~~~qlgl 119 (971) ..|.++. -..-||.+..... .-.-+..+|=..|+ .|||.+++|-.+.. .-+|+.=.. +.-=..| T Consensus 18 ~~v~l~~--in~n~~~L~~s~~s~v~v~~~n~i~yn~~~nnFSIsFWlRi~k~~~~~~~~neytII~~~~---nnsGWkI 92 (195) T PF07953_consen 18 GDVQLNY--INNNQFKLYSSNQSEVIVIQNNNIFYNSMYNNFSISFWLRIPKYDNNINLHNEYTIINCMK---NNSGWKI 92 (195) T ss_dssp TTEEEES--SSTTEEEEESSTTCEEEEEEETTGSCSCSSSEEEEEEEEEEECHHSCHHTTSEEEEEEEEE---TTEEEEE T ss_pred CCEEEEE--cCcceEEEccCCcccEEEEecceEEEeccccceeEEEEEEcCCcccccccccceEEEEecc---CCCceEE Confidence 4455544 3355777775544 22235666767777 99999999974321 223544332 2233344 Q ss_pred EEcccccCceeEEEEEEecCCCcceeEeeeccc----CC--CccceEEEEEEeC-CeeEEEEcccccceeeecc Q FBpp0290335 120 HLSPVVKNSYNVSLVYTQADQNIGRKLASFGVA----HV--PDKWNSIALQVLS-DKVSFYYDCELRNTTLVTR 186 (971) Q Consensus 120 ~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~----l~--dg~WHrlaLsV~g-~~VtLyvDC~~~~t~~l~r 186 (971) .|..-. +.+...+..+ ..+...|++. +. -.+||.+++++.. ....||+|-+.+....+.- T Consensus 93 ~l~~n~-----lI~tl~D~ng--~~k~i~f~y~~~~~~sdyiNkW~fItIt~~rL~~~~IYING~L~~~~~I~~ 159 (195) T PF07953_consen 93 SLRNNN-----LIWTLQDSNG--NEKNIYFRYSESISISDYINKWHFITITNNRLGNSKIYINGKLIDNESIKN 159 (195) T ss_dssp EEETTE-----EEEEEEETTS--EEEEEEEESSSTSSTTSSTTSEEEEEEEEETTSEEEEEETTEEEEEEE-TT T ss_pred EEeCCe-----EEEEEEccCC--ceEEEEEEeeccCChhHhccceEEEEEEeccCCcceEEECCEEEeccchhh Confidence 443331 3333333332 2344555322 12 2699999999999 7779999999988775544No 9>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 4JQT_A 3OSD_A 4QHZ_B 3HBK_A 3H3L_A 3NMB_A 3S5Q_A 4HXC_A 3U1X_A .... Probab=88.07 E-value=0.15 Score=48.89 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=56.3 Q ss_pred CCceEEEEEEee-cCCCCceEEEEEe---CCCCeEEEEEEEcccccCceeEEEEEEecCCCc----ceeEeeecccCCCc Q FBpp0290335 85 LYEFAILITFRQ-SSLKGGYLFSVVN---PLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNI----GRKLASFGVAHVPD 156 (971) Q Consensus 85 l~eFSilaT~R~-~~~~~g~LfsV~~---~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~----~~~~~sF~v~l~dg 156 (971) |.+|.|-+.+|. ...+.+.+|...+ ..+....+.+.+...... .......+... .....+..+.+..+ T Consensus 52 ~~df~l~~d~k~~~~~~~gi~~r~~~~~~~~~~~~gy~~~i~~~~~~----~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 127 (185) T PF06439_consen 52 FSDFTLEVDFKITPGGNSGILFRAQDNGENQDPNNGYEVQIDNSGRG----SKLNRSTGSIYGEIEKNVEASVNVAFKPG 127 (185) T ss_dssp BSSEEEEEEEEEGTTSEEEEEEEESTECESSGGGTSEEEEEE-TTTC----STTTTSTTSBTTTBETTB-SSSCGS--TT T ss_pred CCCEEEEEEEEEcCCCcceEEEEeccccCCCccceEEEEEEeCccCc----cccCcccceEeeeeecccccccccccCCC Confidence 349999999996 5566777777761 112233344444443110 00000011100 00122234556678 Q ss_pred cceEEEEEEeCCeeEEEEcccccceeeecc Q FBpp0290335 157 KWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (971) Q Consensus 157 ~WHrlaLsV~g~~VtLyvDC~~~~t~~l~r 186 (971) +||+|.|.|.++++++|||-+++.+...++ T Consensus 128 ~W~~~~I~~~g~~i~v~vNG~~v~~~~d~~ 157 (185) T PF06439_consen 128 QWNTVRIEVKGNRITVYVNGKLVLEFTDPD 157 (185) T ss_dssp SEEEEEEEEETTEEEEEETTEEEEEEETTS T ss_pred ceEEEEEEEECCEEEEEECCEEEEEEEcCC Confidence 999999999999999999999987765555No 10>PF14099 Polysacc_lyase: Polysaccharide lyase; InterPro: IPR025975 This family includes heparin lyase I (4.2.2.7 from EC). Heparin lyase I depolymerises heparin by cleaving the glycosidic linkage next to an iduronic acid moiety [, ]. The structure of heparin lyase I consists of a beta-jelly roll domain with a long, deep substrate-binding groove and an unusual thumb domain containing many basic residues extending from the main body of the enzyme []. This family also includes glucuronan lyase, (4.2.2.14 from EC) []. The structure glucuronan lyase is a beta-jelly roll [].; PDB: 2ZZJ_A 3IKW_A 3ILR_A 3INA_A 3IMN_A 3IN9_A. Probab=68.68 E-value=10 Score=36.37 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=43.2 Q ss_pred CceEEEEEeCCCC----eEEEEEEEcccccCceeEEEEEEecCCC--cceeEeee-cccCCCccceEEEEEEeC-----C Q FBpp0290335 101 GGYLFSVVNPLDT----VVQLGVHLSPVVKNSYNVSLVYTQADQN--IGRKLASF-GVAHVPDKWNSIALQVLS-----D 168 (971) Q Consensus 101 ~g~LfsV~~~~~~----~~qlgl~lsg~~~~~~~i~L~Y~~~~~~--~~~~~~sF-~v~l~dg~WHrlaLsV~g-----~ 168 (971) ...|+++....+. ..-|.|++... +..+.+.+...... .......+ ..++.-|+||+|.|.|.= . T Consensus 84 ~~~i~Q~~~~~~~~~~~~P~~~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~~~~i~~s~~~~G 160 (212) T PF14099_consen 84 WFIIFQWHGSPDGEQSGSPPLALRISGG---RLYLRVRNDDNTSNPNTSNIARYIPSAPIPRGKWHDFVVHIKWSPDGDG 160 (212) T ss_dssp EEEEEEEEEE-TTSSSEEECEEEEEETT---EEEEEEEEE--ETTCEEEEEEEEEECCCS-TTSEEEEEEEEEE-CCTCE T ss_pred eeEEEEEEeCCCCCCCCCCeEEEEEECC---EEEEEEEcCCCCcccccceeeEeeccCccCCCCEEEEEEEEEECCCCCE Confidence 4457777765444 57788888443 33333333333101 11111222 456678999999999922 5 Q ss_pred eeEEEEcccccc Q FBpp0290335 169 KVSFYYDCELRN 180 (971) Q Consensus 169 ~VtLyvDC~~~~ 180 (971) .|.|++|-+++- T Consensus 161 ~i~vw~nG~~v~ 172 (212) T PF14099_consen 161 YIEVWVNGKLVV 172 (212) T ss_dssp EEEEEECCEEEE T ss_pred EEEEEECCEEEE Confidence 699999986653No 11>PF16346 DUF4975: Domain of unknown function (DUF4975) Probab=66.76 E-value=34 Score=32.47 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=70.0 Q ss_pred ceEecCCccccCCccccCCCCCCceEEEEEEeecCCCCceEEEEEeCCCCeEEEEEEEcccccCceeEEEEEEecCCCc- Q FBpp0290335 64 AFRFLQTADVKSPYRMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNI- 142 (971) Q Consensus 64 Ay~f~~~a~l~~pt~~lfP~~l~eFSilaT~R~~~~~~g~LfsV~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~- 142 (971) .|.|... +..+|++.-..+-|.+|++.......+=|++....+....+.|+++....++..+.|.=....... T Consensus 37 ~~~l~~~------~~v~f~~L~~~~kIs~ti~~~~~~~~FGi~f~~~~d~~~~Y~i~~np~~~~~~~~~f~~~~~~~~~~ 110 (176) T PF16346_consen 37 GYTLSGN------AYVLFNRLPGTNKISATIKFSEGTDKFGISFRRDSDSEEGYYIRFNPENNNRNRLNFENEGNIGKGF 110 (176) T ss_pred eEEEecc------eEEEeccCCCceEEEEEEEeCCCCCeEEEEEEECCCccccEEEEEeeccccceEEEEEecCcccccc Confidence 6666653 345565433389999999988777666555555456788889999986322333444111111111 Q ss_pred ceeEeeecccCCCccceEEEEEEeCCeeEEEEcccccce Q FBpp0290335 143 GRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNT 181 (971) Q Consensus 143 ~~~~~sF~v~l~dg~WHrlaLsV~g~~VtLyvDC~~~~t 181 (971) .+......+.+..++=.+|.|.++++-..|||+-+-..+ T Consensus 111 ~~~~~~~~~~~~a~~~y~v~I~~d~SV~v~YVNd~vAlT 149 (176) T PF16346_consen 111 IQGIDEYPFELPADNEYHVKIVIDNSVCVVYVNDEVALT 149 (176) T ss_pred cccccceeeecCCCCEEEEEEEEcCCEEEEEECCeEEEE Confidence 011122344556788889999999999999998766544No 12>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3ILN_A 1UMZ_A 1UN1_B 3HR9_A 1MVE_A 3H0O_A 1ZM1_A 3AXD_B 2R49_A 3AXE_A .... Probab=48.93 E-value=76 Score=28.82 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.3 Q ss_pred cCCCccceEEEEEEeCCeeEEEEccccccee Q FBpp0290335 152 AHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (971) Q Consensus 152 ~l~dg~WHrlaLsV~g~~VtLyvDC~~~~t~ 182 (971) ...+..||...|....++|.+|||-+++.+. T Consensus 106 ~~~~~~~H~y~v~W~~~~i~fyvDg~~~~~~ 136 (177) T PF00722_consen 106 FDDSNDFHTYGVEWTPDSIRFYVDGKLVRTV 136 (177) T ss_dssp STTTTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred ccccccceEEEEEEeeeeeeeccCCeeEEee Confidence 4567799999999999999999998887765No 13>PF16323 DUF4959: Domain of unknown function (DUF4959) Probab=43.68 E-value=1.6e+02 Score=28.46 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=11.8 Q ss_pred hhhHHHHHHHHHHHHhhhcc Q FBpp0290335 4 LQGVMFALAMICTLLVPVLG 23 (971) Q Consensus 4 ~~~~~~~~~~ll~~~~~~~~ 23 (971) |...++++++++++|++|.. T Consensus 1 mk~~~~~~~~~~~~l~sC~~ 20 (225) T PF16323_consen 1 MKKYLLLLLLALLLLASCKE 20 (225) T ss_pred ChhhHHHHHHHHHhEEecCC Confidence 44555566666666666665No 14>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 4CCC_A 3ZR6_A 4CCE_A 4CCD_A 3ZR5_A. Probab=41.92 E-value=1e+02 Score=34.79 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=31.2 Q ss_pred cccCCCccceEEEEEEeCCeeEEEEcccccceeeeccCCcccccCCCceEEEecc Q FBpp0290335 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQA 204 (971) Q Consensus 150 ~v~l~dg~WHrlaLsV~g~~VtLyvDC~~~~t~~l~r~p~~l~~~~~~~l~IGq~ 204 (971) .+.+..++||+|+|.|+++.++-|||-..+-+... . .+...+.+-||.. T Consensus 605 ~~~~~~~~WhtLtL~~~g~~~~g~lng~~l~~~~~-~-----~~p~~G~aaiGT~ 653 (669) T PF02057_consen 605 KAGVGAGRWHTLTLTVKGSSITGSLNGTVLWTNVP-V-----SFPKNGWAAIGTS 653 (669) T ss_dssp E-S--SS-EEEEEEEEETTEEEEEETTEEEEEEEE--------SS---EEEEEES T ss_pred EeccCCCceEEEEEEEEccEEEEEECCEEEEEecc-c-----CCCCCceEEEEcC Confidence 45556789999999999999999999987643222 1 1234577788875No 15>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1UAI_A 1VAV_B 3ZPY_B 4BE3_B 4Q8L_B 4Q8K_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A .... Probab=35.82 E-value=1.3e+02 Score=29.14 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=54.2 Q ss_pred EEEEEEeecC--CC------CceEEEEEeCC--CCeEEEEEEEccccc-CceeEEEEEEecC-CCcceeEeeecccCCCc Q FBpp0290335 89 AILITFRQSS--LK------GGYLFSVVNPL--DTVVQLGVHLSPVVK-NSYNVSLVYTQAD-QNIGRKLASFGVAHVPD 156 (971) Q Consensus 89 SilaT~R~~~--~~------~g~LfsV~~~~--~~~~qlgl~lsg~~~-~~~~i~L~Y~~~~-~~~~~~~~sF~v~l~dg 156 (971) .|.++++... .+ .-++-+|.... .....|.|....... ..-.|.+.+.... .........+. .+.-| T Consensus 86 ~l~a~l~V~~~~~~~~~~~~~viigQIH~~~~~~~~pllkl~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~i~LG 164 (236) T PF08787_consen 86 TLEATLAVTQVPSGGKSNNPRVIIGQIHGKDGGSNPPLLKLYYRKEPGNEKGSVYAYVKDNNPDGGDISSNVYG-GIPLG 164 (236) T ss_dssp EEEEEEEEEE-TTTSCTTTCEEEEEEEEESSSTSCEEEEEEEEEESTTTESSEEEEEEESSTCTTSEEEEEEEE-EEETT T ss_pred EEEEEEEEEecCCCCCceeeeEEEEEEecCCCCCCccEEEEEEEEeeccCCCeEEEEEeccCCCCCceEEEeEc-CccCC Confidence 7888888732 22 23466777753 356666776632100 0113666666221 11111222221 23456 Q ss_pred cceEEEEEEeCCeeEEEEccccccee Q FBpp0290335 157 KWNSIALQVLSDKVSFYYDCELRNTT 182 (971) Q Consensus 157 ~WHrlaLsV~g~~VtLyvDC~~~~t~ 182 (971) +|-++.|.|.+..|+++++++..... T Consensus 165 ~~F~y~I~v~~~~l~V~~ng~~~~~~ 190 (236) T PF08787_consen 165 EKFSYEIRVSNGTLTVYVNGEGKSTT 190 (236) T ss_dssp -EEEEEEEEETTEEEEEETTEEEEEE T ss_pred CEEEEEEEEeCCEEEEEEECCCceEE Confidence 99999999999999999999987654No 16>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0030246 carbohydrate binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 2YMZ_A 4LBQ_D 4NO4_A 4GA9_A 3M2M_F .... Probab=31.76 E-value=1.7e+02 Score=25.10 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=63.2 Q ss_pred ccCCCCCC-ceEEEEEEeecCCCCceEEEEEeC--CCCeEEEEEEEcccccCceeEEEEEEecCCCcceeEeeecccCCC Q FBpp0290335 79 MLLPEKLY-EFAILITFRQSSLKGGYLFSVVNP--LDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVP 155 (971) Q Consensus 79 ~lfP~~l~-eFSilaT~R~~~~~~g~LfsV~~~--~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~l~d 155 (971) ..||..|. .=+|.++-+.......+-+.+... ......+.|.++..-. ...|.+-+...+.=..++...-..++.. T Consensus 4 ~~l~~~l~~G~~i~I~G~~~~~~~~F~i~l~~~~~~~~~~~i~lh~~~r~~-~~~iv~Ns~~~g~W~~ee~~~~~~pf~~ 82 (134) T PF00337_consen 4 GPLPGGLEPGDSIIIRGTVPPDAERFSINLQTGPSNEPQDDIALHFNPRFD-ENVIVRNSRINGKWGQEERSEGPFPFRP 82 (134) T ss_dssp EEETTEEETTEEEEEEEEEBTTSSBEEEEEEECTTTTTTTEEEEEEEEETT-TTEEEEEEEETTEE-SEEEEESSTSSTT T ss_pred EECCCCCCCCCEEEEEEEECCCCCEEEEEeCCCcCCCCCcEEEEEEEEEeC-chhhhhhheeecccccccccceeeeecC Confidence 34577774 666777777767777777777775 1222344455544422 2335555554442111122123566678 Q ss_pred ccceEEEEEEeCCeeEEEEccccccee Q FBpp0290335 156 DKWNSIALQVLSDKVSFYYDCELRNTT 182 (971) Q Consensus 156 g~WHrlaLsV~g~~VtLyvDC~~~~t~ 182 (971) ++=-.|.|.+..+...+|||-..+... T Consensus 83 g~~F~l~I~~~~~~f~I~vng~~~~~f 109 (134) T PF00337_consen 83 GQPFELRIVVTEDGFEIYVNGKHFCEF 109 (134) T ss_dssp TSEEEEEEEEESSEEEEEETTEEEEEE T ss_pred CCcEEEEEEEecceEEEEECCeEEEEe Confidence 888999999999999999998776544No 17>PF11267 DUF3067: Domain of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A. Probab=30.13 E-value=11 Score=32.52 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.4 Q ss_pred cChHHHHHHHHhhh Q FBpp0290335 957 KTADEYAAHLENLL 970 (971) Q Consensus 957 ~~~~~~~~~~~~~~ 970 (971) +||+||.+||+.+. T Consensus 42 ltE~eY~~hL~~ia 55 (98) T PF11267_consen 42 LTEEEYLEHLDAIA 55 (98) T ss_dssp S-HHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH Confidence 69999999999864No 18>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM. Probab=21.50 E-value=34 Score=36.64 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.0 Q ss_pred cccCCCccceEEEEEEeCCeeEEEEcccccceeeecc Q FBpp0290335 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (971) Q Consensus 150 ~v~l~dg~WHrlaLsV~g~~VtLyvDC~~~~t~~l~r 186 (971) ..++-++.|.++.|.+.+++|.|.++-+.+....|+- T Consensus 83 ~~~l~~~~wN~v~l~~~g~~v~~~lN~~~i~~~~~~~ 119 (411) T PF07622_consen 83 PLPLKDNAWNRVKLQRSGDTVQLHLNGQLIYERPLDP 119 (411) T ss_pred CCCCCcccccEEEEEEeCCEEEEEECCeEEEEEecCC Confidence 4677899999999999999999999999998887755