Query FBpp0290336 type=protein; loc=3L:join(7012190..7012289,7012739..7013277,7033869..7033964,7034503..7034538,7034635..7034703,7034972..7035038,7035170..7035315,7035744..7035881,7038005..7038151,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7049550..7049576,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0290336; name=Mp-PM; parent=FBgn0260660,FBtr0301114; dbxref=REFSEQ:NP_001163364,GB_protein:ACZ94635,FlyBase:FBpp0290336,FlyBase_Annotation_IDs:CG42543-PM,FlyMine:FBpp0290336,modMine:FBpp0290336; MD5=5029279297a892ed6f7b6c926fd7067e; length=1017; release=r6.06; species=Dmel; Match_columns 1017 No_of_seqs 776 out of 2730 Neff 6.3 Searched_HMMs 16187 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF06482 Endostatin: Collagena 100.0 9.8E-76 6E-80 628.9 13.6 263 716-978 1-285 (286) 2 PF07588 DUF1554: Protein of u 99.7 2.8E-18 1.8E-22 165.5 8.0 126 818-953 2-133 (135) 3 PF02210 Laminin_G_2: Laminin 98.6 3.4E-07 2.1E-11 85.0 13.5 114 98-221 4-124 (127) 4 PF13385 Laminin_G_3: Concanav 98.4 1.5E-06 9.5E-11 82.0 14.8 129 87-228 18-148 (152) 5 PF00054 Laminin_G_1: Laminin 97.7 0.00029 1.8E-08 65.9 13.7 113 98-222 4-126 (131) 6 PF00354 Pentaxin: Pentaxin fa 97.7 0.00037 2.3E-08 70.2 15.4 126 85-225 24-157 (194) 7 PF02973 Sialidase: Sialidase, 97.4 0.0015 9E-08 65.1 15.6 137 85-228 30-178 (189) 8 PF07953 Toxin_R_bind_N: Clost 92.8 0.51 3.2E-05 46.0 12.0 124 50-185 17-158 (195) 9 PF06439 DUF1080: Domain of Un 90.7 0.11 6.7E-06 50.2 4.6 104 78-185 44-156 (185) 10 PF16346 DUF4975: Domain of un 75.5 17 0.0011 34.8 12.8 112 64-182 37-150 (176) 11 PF14099 Polysacc_lyase: Polys 73.0 8.8 0.00054 37.2 10.3 78 101-181 84-173 (212) 12 PF02057 Glyco_hydro_59: Glyco 54.7 34 0.0021 39.0 11.6 50 150-205 605-654 (669) 13 PF00722 Glyco_hydro_16: Glyco 53.2 86 0.0053 28.6 12.9 31 152-182 106-136 (177) 14 PF00337 Gal-bind_lectin: Gala 53.1 79 0.0049 27.6 12.6 105 77-182 2-109 (134) 15 PF08787 Alginate_lyase2: Algi 53.0 70 0.0043 31.4 12.8 93 89-182 86-190 (236) 16 PF16323 DUF4959: Domain of un 38.8 1.9E+02 0.012 28.0 14.7 21 4-24 1-21 (225) 17 PF05018 DUF667: Protein of un 31.5 1.2E+02 0.0077 28.5 10.1 38 32-69 10-51 (185) 18 PF15128 T_cell_tran_alt: T-ce 30.4 12 0.00071 31.7 1.8 31 1-34 23-55 (92) 19 PF07622 DUF1583: Protein of u 29.8 20 0.0012 38.7 4.2 37 150-186 83-119 (411) 20 PF11267 DUF3067: Domain of un 29.6 12 0.00073 32.6 1.8 14 1003-1016 42-55 (98) 21 PF02018 CBM_4_9: Carbohydrate 21.1 2.4E+02 0.015 23.3 10.5 22 155-176 101-126 (131)No 1>PF06482 Endostatin: Collagenase NC10 and Endostatin; InterPro: IPR010515 NC10 stands for Non-helical region 10 and is taken from P39059 from SWISSPROT. A mutation in this region in P39060 from SWISSPROT is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor []. Endostatin also binds a zinc ion near the N terminus; this is likely to be of structural rather than functional importance according to [].; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0031012 extracellular matrix; PDB: 1DY2_A 1DY1_A 1DY0_A 1KOE_A 3N3F_B 1BNL_D 3HSH_E 3HON_A. Probab=100.00 E-value=9.8e-76 Score=628.92 Aligned_cols=263 Identities=48% Similarity=0.867 Sum_probs=181.1 Q ss_pred CceeEeccHHHHHhccCCCCCCceeeecccceEEEEEcCCceEecccccccCCCCCCCCCCC----CCCcc-cccccCcc Q FBpp0290336 716 PGAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTTVA----PSMRF-DLQSKNLL 790 (1017) Q Consensus 716 pgv~t~~n~~~m~~~s~~s~eGtlaYi~~~~~l~vrv~~g~~~I~lg~~~p~~~~~pp~~~~----p~~~~-~~~~~~~~ 790 (1017) +|+++|+|+++|+++++..+||||+||+++++|||||++|||+|+||+++|++...++..++ +|..+ .....+.. T Consensus 1 sGV~vf~T~~~Ml~~a~~~pEGTLayV~e~~eLYVRVrnGWRkV~LG~~ip~~~~~~~~~va~~~p~P~v~~~~~~~~~~ 80 (286) T PF06482_consen 1 SGVTVFRTYETMLATAHRVPEGTLAYVIEREELYVRVRNGWRKVQLGELIPIPSDTPDNEVASTQPPPVVSSPPQSSPPS 80 (286) T ss_dssp --EEEESSHHHHHCHGGGS-TTEEEEETTTTEEEEEETTEEEEE-EEEEEE----------------------------- T ss_pred CCcEEecCHHHHHhhcccCCCeEEEEEEecceEEEEecCCeeeeccCCcccCCCCcccccccccCCCCccccCccccccc Confidence 37899999999999999999999999999999999999999999999999987765432111 11111 00100000 Q ss_pred CCCC----------------CCCCCCCccCCCCcceEEEEEcCCCCCCCCCccchhhHHHHHHHhhcCCCCceeEEeecc Q FBpp0290336 791 NSPP----------------PLLNTPTFTTAPEYETLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSR 854 (1017) Q Consensus 791 ~~~~----------------~~~~~~~~~~~~~~~~l~l~al~~~~~G~~~Gi~GAD~~C~~~a~~~g~~gt~rA~Ls~~ 854 (1017) .... +....|...+..++..|||||||+|++|||+||+|||++||+|||++||.||||||||++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~liAlN~P~~G~m~Gi~gAD~~C~~qAr~~gl~gtfRAfLSs~ 160 (286) T PF06482_consen 81 SHPRPPSTAPDPHYPPQPRRPPPPSPSAHTHHDDGPLHLIALNEPLSGNMRGIRGADFQCFRQARAAGLTGTFRAFLSSR 160 (286) T ss_dssp -----------------------------S--TTS-EEEEE-SS-B-SBSSHHHHHHHHHHHHHHHTT--S-EEESS-BT T ss_pred ccCCcccCCCCccCCCCccccCCCCCccccccCCCceEEEEcCCCCCCCccccccccHHHHHHHHHcCCCCceEEeeecc Confidence 0000 000011112233455699999999999999999999999999999999999999999999 Q ss_pred ccCcccccCCCCC-CCccccCCCcEEecCccccccCCCCcccCCCceeecCCCccCCCCCCCcceEEecCCCCcccccCc Q FBpp0290336 855 VQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDT 933 (1017) Q Consensus 855 ~~~~~~~v~~~dr-~~p~vn~~g~vl~~~~~~l~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~k~vW~Gs~~~g~~~~~~ 933 (1017) +|||++||++.|| ++||||+||||||+||++||+++++.|..+++||||||+|||+|++||+|+|||||+++|+|..++ T Consensus 161 ~qdL~~iV~~~dr~~~PivNlkgevLf~sw~~lf~g~~~~~~~~~~iySFdGr~v~~d~~wP~K~vWhGs~~~G~r~~~~ 240 (286) T PF06482_consen 161 LQDLYSIVRRADRDNVPIVNLKGEVLFNSWESLFSGSGGPFNPNAPIYSFDGRDVLTDPAWPQKMVWHGSDPRGRRLTDS 240 (286) T ss_dssp TB-GGGGS-GGGTSS--EE-TTS-EEES-HHHHTSSS-SB--TTS--BBTTS-BTTTSTTSSS-EEE--B-TTS-B-TTS T ss_pred cccHhhhccHhhCCCCCeEeCcCCEeecCHHHHhCCCCCCCCCCCcEEeECCccccCCCCcceEEEEeCCCCCCccCCcC Confidence 9999999999999 899999999999999999999998999999999999999999999999999999999999999999 Q ss_pred ccCcccCCCCCceeecccCCcccccccccccccCCcEEEEEeccc Q FBpp0290336 934 YCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDSKLIILCVEALS 978 (1017) Q Consensus 934 ~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C~~~~~~lCvE~~~ 978 (1017) ||++|+|++.+++|+||+|++++||.|+.+||+++||||||||+. T Consensus 241 ~C~~Wrs~~~~~~G~As~l~~g~ll~q~~~sC~~~~ivLCiE~~~ 285 (286) T PF06482_consen 241 YCEAWRSSDPAVTGQASSLQSGKLLDQQPYSCSNSFIVLCIENSF 285 (286) T ss_dssp BHHHHB---TTSEEEEEEGGGTBSS--EEEETTS-BB-EEEESS- T ss_pred cccccccCCCCceEeeeecCCCCcccCCcccCCCceEEEEEeccc Confidence 999999999999999999999999999999999999999999974No 2>PF07588 DUF1554: Protein of unknown function (DUF1554); InterPro: IPR011448 This is a domain that occurs in 1-2 copies in a family of proteins identified in Leptospira interrogans and other bacteria. The function of the proteins is not known. Probab=99.72 E-value=2.8e-18 Score=165.54 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=97.2 Q ss_pred CCCCCCCCccchhhHHHHHHHhhcC--CCCceeEEeeccccCcccc-cCCCCCCCccccCCCcEEecCccccccCCCC-c Q FBpp0290336 818 EPSTGDLQGIRGADFACYRQGRRAG--LLGTFKAFLSSRVQNLDTI-VRPADRDLPVVNTRGDVLFNSWKGIFNGQGG-F 893 (1017) Q Consensus 818 ~~~~G~~~Gi~GAD~~C~~~a~~~g--~~gt~rA~Ls~~~~~~~~~-v~~~dr~~p~vn~~g~vl~~~~~~l~~~~~~-~ 893 (1017) ..|+|||+||.|||++|++.+.+.. ..++|||||++.+...+.+ +.++-. ....||||.+|.+|++. ++. + T Consensus 2 ~~~~GnlGGi~GADa~C~~d~~~p~~~~~~~yKAml~~~~~~~R~a~~t~n~~----~g~~DWVl~pnt~Y~r~-dgt~i 76 (135) T PF07588_consen 2 NTYNGNLGGISGADAKCNADANKPSPGGGGTYKAMLVDGSNSTRRACVTANCG----DGQIDWVLKPNTTYYRS-DGTTI 76 (135) T ss_pred ccccCcccchhhHhHHHHcCCCCCCCCCCcCeEEEEEcCccccceeecCCCCC----CCcccceecCCceEEec-CCCEE Confidence 4689999999999999998887654 5679999999976522222 222222 22789999999999998 555 7 Q ss_pred ccCCCc-eeecCCCccCCCCCC-CcceEEecCCCCcccccCcccCcccCCCCCceeecccCC Q FBpp0290336 894 FSQAPR-IYSFSGKNVMTDSTW-PMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLD 953 (1017) Q Consensus 894 ~~~~~~-i~~f~~~~~~~~~~~-~~k~vW~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~ 953 (1017) |+++.. ||+|+ |++++- ..+.+|||++.+++... .+|++|+++....+|.....+ T Consensus 77 ~tTn~~glf~f~----l~~~i~~~~~~~WTGl~~~Wt~~~-~~C~~Wt~~s~~~~G~~G~~n 133 (135) T PF07588_consen 77 FTTNSNGLFDFP----LSNPISGTSGTIWTGLNSDWTTAT-NNCNNWTSGSSGVTGAYGSSN 133 (135) T ss_pred EecCCCceEccc----ccceecCCCccEEEeECCCCeeCC-CcccCCcCCCCcccccccccc Confidence 777766 99997 455443 48999999999987774 899999999988777766544No 3>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3SH4_A 3SH5_A 2C5D_A 4RA0_A 1H30_A .... Probab=98.57 E-value=3.4e-07 Score=84.97 Aligned_cols=114 Identities=13% Similarity=0.200 Sum_probs=83.1 Q ss_pred CCCCceEEEEEeCCCCeeEEEEEEcccccCceeEEEEEEecccccceeEeEeecccCCCCeeEEEEEEeCCeEEEEEcCc Q FBpp0290336 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (1017) Q Consensus 98 ~~~~g~LfsI~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~Dg~WHrlaLsV~g~~VtLyVDC~ 177 (1017) ....+.||.+.+. +...+|.|.|... .|.|.|..... ......+...+.|++||+|.|..+.+.++|+|||. T Consensus 4 ~~~~glLl~~~~~-~~~~~~~l~l~~g-----~l~~~~~~~~~--~~~~~~~~~~~~dg~wh~v~v~~~~~~~~l~vd~~ 75 (127) T PF02210_consen 4 RQPNGLLLYIGSQ-NSSDFLALELRNG-----RLVFRYNLGGE--EEISLFSPRNVNDGEWHSVSVRRSGNNVTLSVDDN 75 (127) T ss_dssp SSSSEEEEEEEES-TTSEEEEEEEETT-----EEEEEEESSSS--EEEEEESSSCCTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCEEEEEEcCC-CCCeEEEEEEECC-----EEEEEEEeecc--ceeeccccccccchheeeeeeeeeeeeeeeccCCc Confidence 5567899999997 4478999999855 37777765521 12333336788899999999999999999999999 Q ss_pred cceeecccCCCcccccCCCeeEEEEeccccc-------CCccccceeeeEE Q FBpp0290336 178 LRNTTLVTREPIELVFDSASTLYIGQAGSII-------GGKFEGYLEKINV 221 (1017) Q Consensus 178 ~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~-------~~~F~G~LQ~L~i 221 (1017) ............. +.....+|||...... ...|+|-|++|+| T Consensus 76 ~~~~~~~~~~~~~--~~~~~~l~iGg~~~~~~~~~~~~~~~F~GCi~~l~i 124 (127) T PF02210_consen 76 RVMSSPSSSSSQQ--LNFDGSLYIGGIPNDFSSPGSDTQPGFVGCIRDLKI 124 (127) T ss_dssp EEEEEESSSTTHC--BESEEEEEESSTTTTCTTTTSSTTSB-EEEEEEEEE T ss_pred ceeeeccCCCccc--cccCCcEEECcccCccccccccCCCCCEEEECeEEE Confidence 9887666543322 3345669999873221 3579999999987No 4>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 1N1Y_A 1MZ6_A 1MZ5_A 2A75_A 1N1S_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A 2AGS_A .... Probab=98.44 E-value=1.5e-06 Score=82.04 Aligned_cols=129 Identities=17% Similarity=0.304 Sum_probs=81.7 Q ss_pred ceEEEEEEeecCCCCce--EEEEEeCCCCeeEEEEEEcccccCceeEEEEEEecccccceeEeEeecccCCCCeeEEEEE Q FBpp0290336 87 EFAILITFRQSSLKGGY--LFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQ 164 (1017) Q Consensus 87 eFSll~TlR~~~~~~g~--LfsI~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~Dg~WHrlaLs 164 (1017) +|+|.+++|+....... +|. ...++ ..+.|.+... ..+.|.+....... ..+.....+..++||+|+|. T Consensus 18 ~~Ti~~w~k~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~W~~va~~ 88 (152) T PF13385_consen 18 DFTISFWVKPDSPSSSDQFIFS--SSNDN-SGFSLFIDSS----GSLQFRVSNGNGTW--YSVTSDTPLSPGQWHHVAIT 88 (152) T ss_dssp SEEEEEEEEESS-SSSEEEEEE--SCCTS-EEEEEEEETT----SCEEEEECCSECCS--CEEE-CS---TT-EEEEEEE T ss_pred CEEEEEEEEECCCCCcceEEEE--eCCCC-CEEEEEEeCC----CEEEEEEECCCCce--EEEEecccccCCcEEEEEEE Confidence 99999999997766543 333 22233 6777777433 24777776543212 23334556678999999999 Q ss_pred EeCCeEEEEEcCccceeecccCCCcccccCCCeeEEEEecccccCCccccceeeeEEeeCcccc Q FBpp0290336 165 VLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1017) Q Consensus 165 V~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~L~i~~dp~~a 228 (1017) +.+.+++||||.+++.+...... ........++||... .....|.|.|.+|+|+..+... T Consensus 89 ~~~~~~~~yvnG~~~~~~~~~~~---~~~~~~~~~~iG~~~-~~~~~f~G~i~~v~i~~~alt~ 148 (152) T PF13385_consen 89 YDGGTVRLYVNGKLVGSSTNTGN---FSSSSSSPLTIGASS-WGSRYFKGYIDEVRIYDRALTP 148 (152) T ss_dssp EETTEEEEEETTEEEEEETCES----SSTCCCCEEEESS-T-TTT---EEEEEEEEEESS---H T ss_pred EccceeeeEEcceEEEEEEeeec---ccCCCceeEEEeecC-CCCCceEEEEEEEEEECCcCCh Confidence 99999999999999988766433 212356789999984 3356799999999999876544No 5>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 2C5D_A 4RA0_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A 1F5F_A .... Probab=97.67 E-value=0.00029 Score=65.94 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=75.4 Q ss_pred CCCCceEEEEEeCCCCeeEEEEEEcccccCceeEEEEEEecccccceeEeEeecccCCCCeeEEEEEEeCCeEEEEEcCc Q FBpp0290336 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (1017) Q Consensus 98 ~~~~g~LfsI~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~Dg~WHrlaLsV~g~~VtLyVDC~ 177 (1017) ....+.||-.-+. +...+|.|.|-.- .|.|.|.-.++ ...+.....+.|++||+|.+......++|.||.+ T Consensus 4 ~~~~GlLly~~~~-~~~df~~l~L~~G-----~l~~~~~~G~g---~~~~~~~~~i~dg~wh~i~~~r~~~~~~l~Vd~~ 74 (131) T PF00054_consen 4 TSPNGLLLYLGSK-DESDFLALELVNG-----RLEFRYNLGGG---PVTLQSPQKINDGKWHTIEVERNGRNGSLQVDGE 74 (131) T ss_dssp SSSSEEEEEEESS-TTSSEEEEEEETT-----EEEEEEESSSE---EEEEEECSETTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCceEEECCcC-CCCCEEEEEeeCC-----EEEEEEecCCc---ceeeccCccccCCCeEEEEeeccceeEEEEEcCc Confidence 4466788866554 4447899998654 38888865443 2344445568899999999999999999999988 Q ss_pred ccee--ecccCCCcccccCCCeeEEEEecc-c-------ccCCccccceeeeEEe Q FBpp0290336 178 LRNT--TLVTREPIELVFDSASTLYIGQAG-S-------IIGGKFEGYLEKINVY 222 (1017) Q Consensus 178 ~~~t--~~l~r~~~~l~~~~~~~l~IGq~g-~-------~~~~~F~G~LQ~L~i~ 222 (1017) +..+ ....... .+. ....+|||--. . .....|+|=|++|+|- T Consensus 75 ~~~~~~~~~~~~~-~l~--~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in 126 (131) T PF00054_consen 75 EPVTGSSPSGATS-QLD--FSDPLYVGGLPSSSSPPRIFVSSPGFKGCIRDLKIN 126 (131) T ss_dssp EEEEEEECSSSSS-TEE--ECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEET T ss_pred cceeEEeeccccc-ccc--cCCcEEEeCCCchhccccccCcCCCeeEEEEEeEEC Confidence 8743 2222221 232 24459998763 1 1113599999999884No 6>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 4AVV_C 4AYU_A 4AVT_J 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B .... Probab=97.67 E-value=0.00037 Score=70.24 Aligned_cols=126 Identities=19% Similarity=0.245 Sum_probs=81.5 Q ss_pred CCceEEEEEEeecCCCCceEEEEEeCCCCeeEEEEEEcccccCceeEEEEEEecccccceeEeEeecccCCCCeeEEEEE Q FBpp0290336 85 LYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQ 164 (1017) Q Consensus 85 ~~eFSll~TlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l~Dg~WHrlaLs 164 (1017) |.+|+|-+.+|....+.+.|||..... ....|-+..+.. ..+.|+.. + ....|.+...+.+||+|.++ T Consensus 24 L~~fTvC~w~~~~~~~~~tifSYa~~~-~~nell~~~~~~----~~~~l~i~--g-----~~~~~~~~~~~~~WhhvC~t 91 (194) T PF00354_consen 24 LSAFTVCFWVRTDLSNSGTIFSYATSS-NDNELLLFISSN----GGFELYIN--G-----SSISFSVSPSDLQWHHVCVT 91 (194) T ss_dssp BSEEEEEEEEEESGSS-EEEEEEEETT-EEEEEEEEEETT----TEEEEEET--T-----EEEEEEECCECSSEEEEEEE T ss_pred cccEEEEEEEEEcCCCceEEEEeecCC-CCcceEEEEeCC----CeEEEEEC--C-----cEEEEecccCCCCCEEEEEE Confidence 349999999999888888999988763 223333333322 23444432 2 22345555567799999998 Q ss_pred EeC--CeEEEEEcCccceeecccCCCcccccCCCeeEEEEecc------cccCCccccceeeeEEeeCc Q FBpp0290336 165 VLS--DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAG------SIIGGKFEGYLEKINVYGNP 225 (1017) Q Consensus 165 V~g--~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g------~~~~~~F~G~LQ~L~i~~dp 225 (1017) -+. ..+.||+|-+...+..+.+ ...+..++.++|||.- -.....|.|+|.+|+|-... T Consensus 92 W~s~~G~~~ly~dG~~~~~~~~~~---g~~i~~gG~~vlGQeQd~~gGgf~~~qsf~G~is~~~iWd~v 157 (194) T PF00354_consen 92 WDSSTGSWQLYVDGERVSSGGLAK---GYSIPPGGTLVLGQEQDSYGGGFDSSQSFVGEISDVNIWDRV 157 (194) T ss_dssp EETTTTEEEEEETTEEEEEEESST---T--B-SSEEEEESS-BSBTTBTCSGGGB--EEEEEEEEESS- T ss_pred cccCCccEEEEeCCEeeeeeeccC---CceECCCCEEEEEEcccCCCCccCcccccceEEeeEEEEeee Confidence 764 7899999999877655543 2345678999999961 11225699999999998775No 7>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 4FQ4_A 4FPJ_A 4FPO_B 4FOW_A 2VW2_A 4FPL_A 4FPE_A 4FPC_A 2VW0_A 4FOY_A .... Probab=97.43 E-value=0.0015 Score=65.14 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=84.6 Q ss_pred CCceEEEEEEeecCCCCc-eEEEEEeCCCCeeEEEEEEcccccCceeEEEEEEecccccceeEeEe-ecccCCCCee--- Q FBpp0290336 85 LYEFAILITFRQSSLKGG-YLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWN--- 159 (1017) Q Consensus 85 ~~eFSll~TlR~~~~~~g-~LfsI~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF-~v~l~Dg~WH--- 159 (1017) |-+++|++.||++....- .||+|.+......+|-|.+... .|-+.+++..+......... .+.+..++|+ T Consensus 30 L~~gTI~v~Fk~t~~~~~qsLfsiSns~~~n~yF~lyi~~~-----~lG~E~R~~~~~~~y~~~~~~~a~v~~~~~~~~~ 104 (189) T PF02973_consen 30 LEEGTIVVEFKPTSKSGIQSLFSISNSKKGNEYFHLYIRNN-----TLGFELRDQSGNQFYLSSRPAPASVWGGYWNSVT 104 (189) T ss_dssp -SSEEEEEEEEESSSSSEEEEEEEE-SSTTTEEEEEEEETT-----EEEEEEEETTTTBCEEEEET-SSB--TECTCEEE T ss_pred ccceEEEEEEecCCCCceeEEEEecCCCCCCceEEEEEECC-----EEEEEEccCCCCccccccccchhhccccccCCce Confidence 448999999999666543 4999999888889999999765 48888888765432222221 1455577997 Q ss_pred --EEEEEEe--CCeEEEEEcC-ccceeecccCCCcccccCCCeeEEEEecccccC--CccccceeeeEEeeCcccc Q FBpp0290336 160 --SIALQVL--SDKVSFYYDC-ELRNTTLVTREPIELVFDSASTLYIGQAGSIIG--GKFEGYLEKINVYGNPDAI 228 (1017) Q Consensus 160 --rlaLsV~--g~~VtLyVDC-~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~--~~F~G~LQ~L~i~~dp~~a 228 (1017) .++|.+. ...++||+|- -...+.... .+. -+++.--.++||....... --|.|.|.+|+||..+... T Consensus 105 ~ntva~~ad~~~~~yklY~NG~l~~~s~~~~-~Fi-~di~~~n~~~lG~t~R~~~~~y~F~G~I~n~~iYn~aLsd 178 (189) T PF02973_consen 105 FNTVAFVADSPNKGYKLYVNGVLSVFSKKSG-KFI-SDIPGLNSVQLGGTKRAGSNAYGFNGTIDNLKIYNRALSD 178 (189) T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEESTS-S-G-GGSTT--EEEESSEEETTEEES--EEEEEEEEEESS---H T ss_pred EEEEEEeecCCCceEEEEEccEEEEEecchh-hHh-hcCCCCceEEEeeeEeCCCcccCcccEEEEEEEECCcCCH Confidence 6777775 5799999999 212222211 121 1123345788887632222 2489999999999887543No 8>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains []. This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif []. The role of this domain in receptor binding appears to be indirect. ; GO: 0004222 metalloendopeptidase activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 3RSJ_B 3FUQ_A 1DFQ_A 1A8D_A 1FV3_A 1YXW_A 1DLL_A 1D0H_A 1YYN_A 1FV2_A .... Probab=92.80 E-value=0.51 Score=46.01 Aligned_cols=124 Identities=12% Similarity=0.196 Sum_probs=75.2 Q ss_pred CCcEEEeccCCCCcceEEcCCCc--c-CCCcccccCCcCC-ceEEEEEEeecCCC-------CceEEEEEeCCCCeeEEE Q FBpp0290336 50 FAGIEFGEAEDGFPAFRFLQTAD--V-KSPYRMLLPEKLY-EFAILITFRQSSLK-------GGYLFSVVNPLDTVVQLG 118 (1017) Q Consensus 50 ~~GV~~v~G~d~~pAy~f~~~a~--l-~~pt~~~fP~~~~-eFSll~TlR~~~~~-------~g~LfsI~~~~~~~~qlg 118 (1017) ...|.++. -..-||++..... + ..-+..+|=+.++ .|||-+++|-.+.. .-+|+.=.. ...=.. T Consensus 17 ~~~v~l~~--in~n~~~L~~s~~s~v~v~~~n~i~yn~~~nnFSIsFWlRi~k~~~~~~~~neytII~~~~---nnsGWk 91 (195) T PF07953_consen 17 NGDVQLNY--INNNQFKLYSSNQSEVIVIQNNNIFYNSMYNNFSISFWLRIPKYDNNINLHNEYTIINCMK---NNSGWK 91 (195) T ss_dssp ETTEEEES--SSTTEEEEESSTTCEEEEEEETTGSCSCSSSEEEEEEEEEEECHHSCHHTTSEEEEEEEEE---TTEEEE T ss_pred CCCEEEEE--cCcceEEEccCCcccEEEEecceEEEeccccceeEEEEEEcCCcccccccccceEEEEecc---CCCceE Confidence 34555654 2356788865544 1 2225666777788 99999999973321 223443332 223344 Q ss_pred EEEcccccCceeEEEEEEecccccceeEeEeecc----cCC--CCeeEEEEEEeC-CeEEEEEcCccceeeccc Q FBpp0290336 119 VHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVA----HVP--DKWNSIALQVLS-DKVSFYYDCELRNTTLVT 185 (1017) Q Consensus 119 L~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~----l~D--g~WHrlaLsV~g-~~VtLyVDC~~~~t~~l~ 185 (1017) |.|... ++.|...+..+ .++...|++. ++| .+||.+++++.. ....||+|-+++....+. T Consensus 92 I~l~~n-----~lI~tl~D~ng--~~k~i~f~y~~~~~~sdyiNkW~fItIt~~rL~~~~IYING~L~~~~~I~ 158 (195) T PF07953_consen 92 ISLRNN-----NLIWTLQDSNG--NEKNIYFRYSESISISDYINKWHFITITNNRLGNSKIYINGKLIDNESIK 158 (195) T ss_dssp EEEETT-----EEEEEEEETTS--EEEEEEEESSSTSSTTSSTTSEEEEEEEEETTSEEEEEETTEEEEEEE-T T ss_pred EEEeCC-----eEEEEEEccCC--ceEEEEEEeeccCChhHhccceEEEEEEeccCCcceEEECCEEEeccchh Confidence 445443 35555555443 2355566432 222 799999999999 777999999999887664No 9>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 4JQT_A 3OSD_A 4QHZ_B 3HBK_A 3H3L_A 3NMB_A 3S5Q_A 4HXC_A 3U1X_A .... Probab=90.67 E-value=0.11 Score=50.21 Aligned_cols=104 Identities=19% Similarity=0.318 Sum_probs=58.4 Q ss_pred ccccCCcCC-ceEEEEEEee-cCCCCceEEEEEe---CCCCeeEEEEEEcccccCceeEEEEEEeccccc----ceeEeE Q FBpp0290336 78 RMLLPEKLY-EFAILITFRQ-SSLKGGYLFSVVN---PLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNI----GRKLAS 148 (1017) Q Consensus 78 ~~~fP~~~~-eFSll~TlR~-~~~~~g~LfsI~~---~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~----~q~~~s 148 (1017) ..++-..-+ +|.|-+.+|. ...+.+++|...+ ..+....+.+.+...... .......+... .....+ T Consensus 44 ~~l~~~~~~~df~l~~d~k~~~~~~~gi~~r~~~~~~~~~~~~gy~~~i~~~~~~----~~~~~~~G~~~~~~~~~~~~~ 119 (185) T PF06439_consen 44 GYLYTDKEFSDFTLEVDFKITPGGNSGILFRAQDNGENQDPNNGYEVQIDNSGRG----SKLNRSTGSIYGEIEKNVEAS 119 (185) T ss_dssp EEEEESSEBSSEEEEEEEEEGTTSEEEEEEEESTECESSGGGTSEEEEEE-TTTC----STTTTSTTSBTTTBETTB-SS T ss_pred eEEEECCCCCCEEEEEEEEEcCCCcceEEEEeccccCCCccceEEEEEEeCccCc----cccCcccceEeeeeecccccc Confidence 333333335 9999999995 5567777777661 112233344444433110 00000111100 011223 Q ss_pred eecccCCCCeeEEEEEEeCCeEEEEEcCccceeeccc Q FBpp0290336 149 FGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVT 185 (1017) Q Consensus 149 F~v~l~Dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~ 185 (1017) ..+.+..++||+|.|.|+++++++|||-.++.+...+ T Consensus 120 ~~~~~~~~~W~~~~I~~~g~~i~v~vNG~~v~~~~d~ 156 (185) T PF06439_consen 120 VNVAFKPGQWNTVRIEVKGNRITVYVNGKLVLEFTDP 156 (185) T ss_dssp SCGS--TTSEEEEEEEEETTEEEEEETTEEEEEEETT T ss_pred cccccCCCceEEEEEEEECCEEEEEECCEEEEEEEcC Confidence 3456668899999999999999999999998776554No 10>PF16346 DUF4975: Domain of unknown function (DUF4975) Probab=75.51 E-value=17 Score=34.78 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=74.1 Q ss_pred ceEEcCCCccCCCcccccCCcCC-ceEEEEEEeecCCCCceEEEEEeCCCCeeEEEEEEcccccCceeEEEEEEeccccc Q FBpp0290336 64 AFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNI 142 (1017) Q Consensus 64 Ay~f~~~a~l~~pt~~~fP~~~~-eFSll~TlR~~~~~~g~LfsI~~~~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~ 142 (1017) .|.|...+ ..+|++ |+ .+-|.+|++.......+=|++....+....+-|.+++..+++.++.|.=....... T Consensus 37 ~~~l~~~~------~v~f~~-L~~~~kIs~ti~~~~~~~~FGi~f~~~~d~~~~Y~i~~np~~~~~~~~~f~~~~~~~~~ 109 (176) T PF16346_consen 37 GYTLSGNA------YVLFNR-LPGTNKISATIKFSEGTDKFGISFRRDSDSEEGYYIRFNPENNNRNRLNFENEGNIGKG 109 (176) T ss_pred eEEEecce------EEEecc-CCCceEEEEEEEeCCCCCeEEEEEEECCCccccEEEEEeeccccceEEEEEecCccccc Confidence 57776532 344553 66 88899999988777766666665567888999999987433455555222221111 Q ss_pred -ceeEeEeecccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290336 143 -GRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1017) Q Consensus 143 -~q~~~sF~v~l~Dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1017) .+....+.+.+..++=.+|.|-++++-..||||-+-..+. T Consensus 110 ~~~~~~~~~~~~~a~~~y~v~I~~d~SV~v~YVNd~vAlTt 150 (176) T PF16346_consen 110 FIQGIDEYPFELPADNEYHVKIVIDNSVCVVYVNDEVALTT 150 (176) T ss_pred ccccccceeeecCCCCEEEEEEEEcCCEEEEEECCeEEEEE Confidence 1111233455567888899999999999999998776553No 11>PF14099 Polysacc_lyase: Polysaccharide lyase; InterPro: IPR025975 This family includes heparin lyase I (4.2.2.7 from EC). Heparin lyase I depolymerises heparin by cleaving the glycosidic linkage next to an iduronic acid moiety [, ]. The structure of heparin lyase I consists of a beta-jelly roll domain with a long, deep substrate-binding groove and an unusual thumb domain containing many basic residues extending from the main body of the enzyme []. This family also includes glucuronan lyase, (4.2.2.14 from EC) []. The structure glucuronan lyase is a beta-jelly roll [].; PDB: 2ZZJ_A 3IKW_A 3ILR_A 3INA_A 3IMN_A 3IN9_A. Probab=72.99 E-value=8.8 Score=37.18 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=44.5 Q ss_pred CceEEEEEeCCCC----eeEEEEEEcccccCceeEEEEEEeccccc--ceeEeEe-ecccCCCCeeEEEEEEeC-----C Q FBpp0290336 101 GGYLFSVVNPLDT----VVQLGVHLSPVVKNSYNVSLVYTQADQNI--GRKLASF-GVAHVPDKWNSIALQVLS-----D 168 (1017) Q Consensus 101 ~g~LfsI~~~~~~----~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~--~q~~~sF-~v~l~Dg~WHrlaLsV~g-----~ 168 (1017) ...|+++....+. ..-|.|.+... ...+.+.+....... ......+ ..++.-|+||+|.|.|.= . T Consensus 84 ~~~i~Q~~~~~~~~~~~~P~~~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~~~~i~~s~~~~G 160 (212) T PF14099_consen 84 WFIIFQWHGSPDGEQSGSPPLALRISGG---RLYLRVRNDDNTSNPNTSNIARYIPSAPIPRGKWHDFVVHIKWSPDGDG 160 (212) T ss_dssp EEEEEEEEEE-TTSSSEEECEEEEEETT---EEEEEEEEE--ETTCEEEEEEEEEECCCS-TTSEEEEEEEEEE-CCTCE T ss_pred eeEEEEEEeCCCCCCCCCCeEEEEEECC---EEEEEEEcCCCCcccccceeeEeeccCccCCCCEEEEEEEEEECCCCCE Confidence 4457777766554 67788888543 333333333321000 0111122 456668999999999922 4 Q ss_pred eEEEEEcCcccee Q FBpp0290336 169 KVSFYYDCELRNT 181 (1017) Q Consensus 169 ~VtLyVDC~~~~t 181 (1017) .|.|++|-+++.. T Consensus 161 ~i~vw~nG~~v~~ 173 (212) T PF14099_consen 161 YIEVWVNGKLVVD 173 (212) T ss_dssp EEEEEECCEEEEE T ss_pred EEEEEECCEEEEE Confidence 7999999977544No 12>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 4CCC_A 3ZR6_A 4CCE_A 4CCD_A 3ZR5_A. Probab=54.71 E-value=34 Score=39.01 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=32.2 Q ss_pred ecccCCCCeeEEEEEEeCCeEEEEEcCccceeecccCCCcccccCCCeeEEEEecc Q FBpp0290336 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAG 205 (1017) Q Consensus 150 ~v~l~Dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g 205 (1017) .+.+..++||+|+|.|+++.++-|||-..+-+.. + ..+...+.+-||..+ T Consensus 605 ~~~~~~~~WhtLtL~~~g~~~~g~lng~~l~~~~-~-----~~~p~~G~aaiGT~~ 654 (669) T PF02057_consen 605 KAGVGAGRWHTLTLTVKGSSITGSLNGTVLWTNV-P-----VSFPKNGWAAIGTSS 654 (669) T ss_dssp E-S--SS-EEEEEEEEETTEEEEEETTEEEEEEE-E-------SS---EEEEEESS T ss_pred EeccCCCceEEEEEEEEccEEEEEECCEEEEEec-c-----cCCCCCceEEEEcCC Confidence 4566678999999999999999999998765422 1 123346778888863No 13>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3ILN_A 1UMZ_A 1UN1_B 3HR9_A 1MVE_A 3H0O_A 1ZM1_A 3AXD_B 2R49_A 3AXE_A .... Probab=53.23 E-value=86 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.4 Q ss_pred ccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290336 152 AHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1017) Q Consensus 152 ~l~Dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1017) ...+..||...|....++|.+|||-+++.+. T Consensus 106 ~~~~~~~H~y~v~W~~~~i~fyvDg~~~~~~ 136 (177) T PF00722_consen 106 FDDSNDFHTYGVEWTPDSIRFYVDGKLVRTV 136 (177) T ss_dssp STTTTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred ccccccceEEEEEEeeeeeeeccCCeeEEee Confidence 4457899999999999999999999988774No 14>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0030246 carbohydrate binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 2YMZ_A 4LBQ_D 4NO4_A 4GA9_A 3M2M_F .... Probab=53.09 E-value=79 Score=27.58 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=65.9 Q ss_pred cccccCCcCC-ceEEEEEEeecCCCCceEEEEEeC--CCCeeEEEEEEcccccCceeEEEEEEecccccceeEeEeeccc Q FBpp0290336 77 YRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNP--LDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAH 153 (1017) Q Consensus 77 t~~~fP~~~~-eFSll~TlR~~~~~~g~LfsI~~~--~~~~~qlgL~ls~~~~~~~~i~l~Y~~~~~~~~q~~~sF~v~l 153 (1017) ...-||..|. .=+|.++-+.......+-+.+... ......+.|.++..-. ...|.+-+...+.=..++...-..++ T Consensus 2 f~~~l~~~l~~G~~i~I~G~~~~~~~~F~i~l~~~~~~~~~~~i~lh~~~r~~-~~~iv~Ns~~~g~W~~ee~~~~~~pf 80 (134) T PF00337_consen 2 FTGPLPGGLEPGDSIIIRGTVPPDAERFSINLQTGPSNEPQDDIALHFNPRFD-ENVIVRNSRINGKWGQEERSEGPFPF 80 (134) T ss_dssp EEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEECTTTTTTTEEEEEEEEETT-TTEEEEEEEETTEE-SEEEEESSTSS T ss_pred ccEECCCCCCCCCEEEEEEEECCCCCEEEEEeCCCcCCCCCcEEEEEEEEEeC-chhhhhhheeecccccccccceeeee Confidence 3445677785 666666666666666677777775 1223345555554422 34556555554431111221235677 Q ss_pred CCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290336 154 VPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1017) Q Consensus 154 ~Dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1017) ..++=-+|.|.+..+.+.+|||-..+... T Consensus 81 ~~g~~F~l~I~~~~~~f~I~vng~~~~~f 109 (134) T PF00337_consen 81 RPGQPFELRIVVTEDGFEIYVNGKHFCEF 109 (134) T ss_dssp TTTSEEEEEEEEESSEEEEEETTEEEEEE T ss_pred cCCCcEEEEEEEecceEEEEECCeEEEEe Confidence 78999999999999999999999877653No 15>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1UAI_A 1VAV_B 3ZPY_B 4BE3_B 4Q8L_B 4Q8K_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A .... Probab=53.03 E-value=70 Score=31.43 Aligned_cols=93 Identities=10% Similarity=-0.019 Sum_probs=55.5 Q ss_pred EEEEEEeecCC--C------CceEEEEEeCC--CCeeEEEEEEccccc-CceeEEEEEEecc-cccceeEeEeecccCCC Q FBpp0290336 89 AILITFRQSSL--K------GGYLFSVVNPL--DTVVQLGVHLSPVVK-NSYNVSLVYTQAD-QNIGRKLASFGVAHVPD 156 (1017) Q Consensus 89 Sll~TlR~~~~--~------~g~LfsI~~~~--~~~~qlgL~ls~~~~-~~~~i~l~Y~~~~-~~~~q~~~sF~v~l~Dg 156 (1017) .|.++++...- + +-++-+|.... .....|.|....... ..-.|.+.+.... .........+ -.+.-| T Consensus 86 ~l~a~l~V~~~~~~~~~~~~~viigQIH~~~~~~~~pllkl~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~~i~LG 164 (236) T PF08787_consen 86 TLEATLAVTQVPSGGKSNNPRVIIGQIHGKDGGSNPPLLKLYYRKEPGNEKGSVYAYVKDNNPDGGDISSNVY-GGIPLG 164 (236) T ss_dssp EEEEEEEEEE-TTTSCTTTCEEEEEEEEESSSTSCEEEEEEEEEESTTTESSEEEEEEESSTCTTSEEEEEEE-EEEETT T ss_pred EEEEEEEEEecCCCCCceeeeEEEEEEecCCCCCCccEEEEEEEEeeccCCCeEEEEEeccCCCCCceEEEeE-cCccCC Confidence 78888887322 2 13577787764 356666776632100 1224777776321 1111122222 133457 Q ss_pred CeeEEEEEEeCCeEEEEEcCccceee Q FBpp0290336 157 KWNSIALQVLSDKVSFYYDCELRNTT 182 (1017) Q Consensus 157 ~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1017) +|-++.|.|....|+++|+++..... T Consensus 165 ~~F~y~I~v~~~~l~V~~ng~~~~~~ 190 (236) T PF08787_consen 165 EKFSYEIRVSNGTLTVYVNGEGKSTT 190 (236) T ss_dssp -EEEEEEEEETTEEEEEETTEEEEEE T ss_pred CEEEEEEEEeCCEEEEEEECCCceEE Confidence 99999999999999999999987664No 16>PF16323 DUF4959: Domain of unknown function (DUF4959) Probab=38.77 E-value=1.9e+02 Score=28.01 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=13.3 Q ss_pred hhHHHHHHHHHHHHhhhhccc Q FBpp0290336 4 LQGVMFALAMICTLLVPVLGS 24 (1017) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (1017) |.-.+|+++|++++|..|-.. T Consensus 1 mk~~~~~~~~~~~~l~sC~~~ 21 (225) T PF16323_consen 1 MKKYLLLLLLALLLLASCKED 21 (225) T ss_pred ChhhHHHHHHHHHhEEecCCC Confidence 455666777777777666553No 17>PF05018 DUF667: Protein of unknown function (DUF667); InterPro: IPR007714 This family of proteins are highly conserved in eukaryotes. Some proteins in the family are annotated as transcription factors. However, there is currently no support for this in the literature. Probab=31.48 E-value=1.2e+02 Score=28.52 Aligned_cols=38 Identities=5% Similarity=-0.052 Sum_probs=22.9 Q ss_pred ccccchhcccchhcCCCC---CCcEEEeccCCC-CcceEEcC Q FBpp0290336 32 IKDALAEYTLTDIMNNNQ---FAGIEFGEAEDG-FPAFRFLQ 69 (1017) Q Consensus 32 ~~D~l~e~dL~~l~g~~~---~~GV~~v~G~d~-~pAy~f~~ 69 (1017) -|++++.++...+..-.. ...|+.+...+- ...|++.. T Consensus 10 ~v~vf~s~g~~pl~~w~~~~~~G~V~~~~D~~ik~~V~~I~G 51 (185) T PF05018_consen 10 FVEVFSSQGSKPLQNWKKKGKQGSVKRVYDKDIKSYVLEIQG 51 (185) T ss_pred eeehhhhcCCCchHHhceecCCCeEEEEeccccCcEEEEEeC Confidence 456666666543322111 457888877654 78888865No 18>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered; InterPro: IPR016560 This entry represents the T-cell leukemia translocation-altered gene protein. It may be required for cellular fusion during osteoclastogenesis []. Probab=30.36 E-value=12 Score=31.67 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=24.0 Q ss_pred CchhhHHHHHHHHHHHHhhhhccccccc--CCcccc Q FBpp0290336 1 MRVLQGVMFALAMICTLLVPVLGSFELV--GQSIKD 34 (1017) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D 34 (1017) |||--.-+|+.||+++++++-++ |. +...-| T Consensus 23 mrv~iFkiLL~WlvlSLl~Ih~A---Wk~yG~tVnd 55 (92) T PF15128_consen 23 MRVAIFKILLGWLVLSLLAIHLA---WKVYGNTVND 55 (92) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhcchhcc Confidence 67777779999999999999888 55 554333No 19>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM. Probab=29.80 E-value=20 Score=38.74 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.1 Q ss_pred ecccCCCCeeEEEEEEeCCeEEEEEcCccceeecccC Q FBpp0290336 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (1017) Q Consensus 150 ~v~l~Dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r 186 (1017) .+++-+++|.++.|.+.+++|.|.+|-+.+....|+- T Consensus 83 ~~~l~~~~wN~v~l~~~g~~v~~~lN~~~i~~~~~~~ 119 (411) T PF07622_consen 83 PLPLKDNAWNRVKLQRSGDTVQLHLNGQLIYERPLDP 119 (411) T ss_pred CCCCCcccccEEEEEEeCCEEEEEECCeEEEEEecCC Confidence 3677799999999999999999999999999987753No 20>PF11267 DUF3067: Domain of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A. Probab=29.59 E-value=12 Score=32.58 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.5 Q ss_pred cChHHHHHHHHHhh Q FBpp0290336 1003 KTADEYAAHLENLL 1016 (1017) Q Consensus 1003 ~~~~~~~~~~~~~~ 1016 (1017) +||+||.+||+.+. T Consensus 42 ltE~eY~~hL~~ia 55 (98) T PF11267_consen 42 LTEEEYLEHLDAIA 55 (98) T ss_dssp S-HHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH Confidence 69999999999874No 21>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 2W5F_A 2WZE_A 2WYS_A 1GUI_A 1ULP_A .... Probab=21.06 E-value=2.4e+02 Score=23.33 Aligned_cols=22 Identities=14% Similarity=0.505 Sum_probs=15.3 Q ss_pred CCCeeEEEEEEeCC----eEEEEEcC Q FBpp0290336 155 PDKWNSIALQVLSD----KVSFYYDC 176 (1017) Q Consensus 155 Dg~WHrlaLsV~g~----~VtLyVDC 176 (1017) .++|+++.+.+.-. .+.|||-. T Consensus 101 ~~~W~~~~~~ft~~~~~~~~~l~~~~ 126 (131) T PF02018_consen 101 TGEWQKYSGTFTAPSDDKNVRLYFES 126 (131) T ss_dssp TSSEEEEEEEEEECSSEEEEEEEEEE T ss_pred CCCeEEEEEEEEECCCCCeEEEEEEe Confidence 58899988877653 56666644