Query FBpp0308936 type=protein; loc=3L:join(7012190..7012289,7012739..7013277,7033869..7033964,7034503..7034538,7034635..7034703,7034972..7035038,7035170..7035315,7035744..7035881,7038005..7038151,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7049550..7049576,7050173..7050187,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0308936; name=Mp-PT; parent=FBgn0260660,FBtr0339904; dbxref=GB_protein:AHN57986,REFSEQ:NP_001286961,FlyBase:FBpp0308936,FlyBase_Annotation_IDs:CG42543-PT; MD5=a6b336b7c94fd4327eae15dd7a2ee72d; length=1022; release=r6.06; species=Dmel; Match_columns 1022 No_of_seqs 775 out of 2754 Neff 6.4 Searched_HMMs 16187 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF06482 Endostatin: Collagena 100.0 8.5E-76 5.2E-80 629.3 13.4 268 716-983 1-285 (286) 2 PF07588 DUF1554: Protein of u 99.7 3.2E-18 2E-22 165.1 8.0 126 823-958 2-133 (135) 3 PF02210 Laminin_G_2: Laminin 98.6 1.9E-07 1.2E-11 86.8 14.1 114 98-221 4-124 (127) 4 PF13385 Laminin_G_3: Concanav 98.5 6E-07 3.7E-11 85.1 14.4 129 87-228 18-148 (152) 5 PF00054 Laminin_G_1: Laminin 97.7 0.00024 1.5E-08 66.5 14.5 114 97-222 3-126 (131) 6 PF00354 Pentaxin: Pentaxin fa 97.7 0.00038 2.3E-08 70.2 15.8 126 85-225 24-157 (194) 7 PF02973 Sialidase: Sialidase, 97.5 0.00086 5.3E-08 66.8 15.3 136 85-227 30-177 (189) 8 PF07953 Toxin_R_bind_N: Clost 94.5 0.18 1.1E-05 49.3 12.0 123 51-185 18-158 (195) 9 PF06439 DUF1080: Domain of Un 91.4 0.077 4.7E-06 51.4 4.3 103 79-186 45-157 (185) 10 PF16346 DUF4975: Domain of un 75.9 14 0.00085 35.5 12.1 111 64-181 37-149 (176) 11 PF14099 Polysacc_lyase: Polys 74.5 8.1 0.0005 37.5 10.5 78 101-181 84-173 (212) 12 PF00337 Gal-bind_lectin: Gala 64.4 43 0.0027 29.5 12.5 102 79-182 4-109 (134) 13 PF00722 Glyco_hydro_16: Glyco 57.8 56 0.0034 30.0 12.4 31 152-182 106-136 (177) 14 PF16323 DUF4959: Domain of un 56.7 1E+02 0.0062 30.2 14.6 19 5-23 2-20 (225) 15 PF02057 Glyco_hydro_59: Glyco 52.4 39 0.0024 38.5 11.6 49 150-204 605-653 (669) 16 PF08787 Alginate_lyase2: Algi 50.9 79 0.0049 31.0 12.8 93 89-182 86-190 (236) 17 PF07622 DUF1583: Protein of u 32.0 18 0.0011 39.1 4.3 37 150-186 83-119 (411) 18 PF11267 DUF3067: Domain of un 28.7 12 0.00075 32.4 1.8 14 1008-1021 42-55 (98) 19 PF06523 DUF1106: Protein of u 20.0 1.2E+02 0.0074 25.1 6.1 51 78-136 16-66 (91)No 1>PF06482 Endostatin: Collagenase NC10 and Endostatin; InterPro: IPR010515 NC10 stands for Non-helical region 10 and is taken from P39059 from SWISSPROT. A mutation in this region in P39060 from SWISSPROT is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor []. Endostatin also binds a zinc ion near the N terminus; this is likely to be of structural rather than functional importance according to [].; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0031012 extracellular matrix; PDB: 1DY2_A 1DY1_A 1DY0_A 1KOE_A 3N3F_B 1BNL_D 3HSH_E 3HON_A. Probab=100.00 E-value=8.5e-76 Score=629.33 Aligned_cols=268 Identities=46% Similarity=0.837 Sum_probs=180.6 Q ss_pred CceeEeccHHHHhhhcCCCCCCceeeecccceEEEEEcCCceEeccCcccccCCCCCCCCC----C-CCCcccccccCcc Q FBpp0308936 716 PGAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTTV----A-PSMRFDLQSKNLL 790 (1022) Q Consensus 716 pgv~t~~n~~~m~~~s~~s~eGtlayi~~~~~l~vrv~~g~~~i~lg~~~p~~~~~pp~~~----~-p~~~~~~~~~~~~ 790 (1022) +|+++|+|+++|+++++..+||||+||+|+++|||||++|||+|+||.++|++...++..+ . |.........+.. T Consensus 1 sGV~vf~T~~~Ml~~a~~~pEGTLayV~e~~eLYVRVrnGWRkV~LG~~ip~~~~~~~~~va~~~p~P~v~~~~~~~~~~ 80 (286) T PF06482_consen 1 SGVTVFRTYETMLATAHRVPEGTLAYVIEREELYVRVRNGWRKVQLGELIPIPSDTPDNEVASTQPPPVVSSPPQSSPPS 80 (286) T ss_dssp --EEEESSHHHHHCHGGGS-TTEEEEETTTTEEEEEETTEEEEE-EEEEEE----------------------------- T ss_pred CCcEEecCHHHHHhhcccCCCeEEEEEEecceEEEEecCCeeeeccCCcccCCCCcccccccccCCCCccccCccccccc Confidence 3789999999999999999999999999999999999999999999999998775532211 1 1100000100000 Q ss_pred CCC--------CCCC---CCCCCCCCCCccccCCceeEEEEcCCCCCCCCCccchhhHHHHHHHhhcCCCCceeEEeecc Q FBpp0308936 791 NSP--------PPLL---NTPTFTTAPEYETWYPRMLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSR 859 (1022) Q Consensus 791 ~~~--------~~~~---~~~~~~~~~~~~~~~~~~l~l~a~~~~~~G~~~Gi~GAD~~C~~~a~~~g~~gt~rA~Ls~~ 859 (1022) ... +... ..+..+....+.....+.|||||||+|++|||+||+|||++||+|||++||.||||||||++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~liAlN~P~~G~m~Gi~gAD~~C~~qAr~~gl~gtfRAfLSs~ 160 (286) T PF06482_consen 81 SHPRPPSTAPDPHYPPQPRRPPPPSPSAHTHHDDGPLHLIALNEPLSGNMRGIRGADFQCFRQARAAGLTGTFRAFLSSR 160 (286) T ss_dssp -----------------------------S--TTS-EEEEE-SS-B-SBSSHHHHHHHHHHHHHHHTT--S-EEESS-BT T ss_pred ccCCcccCCCCccCCCCccccCCCCCccccccCCCceEEEEcCCCCCCCccccccccHHHHHHHHHcCCCCceEEeeecc Confidence 000 0000 00000000112222234599999999999999999999999999999999999999999999 Q ss_pred ccCcccccCCCCC-CCccccCCCcEEecCccccccCCCCcccCCCceeecCCCccCCCCCCCcceEEecCCCCcccccCc Q FBpp0308936 860 VQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDT 938 (1022) Q Consensus 860 ~~~~~~~v~~~dr-~~p~vn~~g~vl~~~~~~l~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~k~vw~Gs~~~g~~~~~~ 938 (1022) +|||++||++.|| ++||||+||||||+||++||+++++.|..+++||||||+|||+|++||+|+|||||+++|+|..++ T Consensus 161 ~qdL~~iV~~~dr~~~PivNlkgevLf~sw~~lf~g~~~~~~~~~~iySFdGr~v~~d~~wP~K~vWhGs~~~G~r~~~~ 240 (286) T PF06482_consen 161 LQDLYSIVRRADRDNVPIVNLKGEVLFNSWESLFSGSGGPFNPNAPIYSFDGRDVLTDPAWPQKMVWHGSDPRGRRLTDS 240 (286) T ss_dssp TB-GGGGS-GGGTSS--EE-TTS-EEES-HHHHTSSS-SB--TTS--BBTTS-BTTTSTTSSS-EEE--B-TTS-B-TTS T ss_pred cccHhhhccHhhCCCCCeEeCcCCEeecCHHHHhCCCCCCCCCCCcEEeECCccccCCCCcceEEEEeCCCCCCccCCcC Confidence 9999999999999 899999999999999999999998899999999999999999999999999999999999999999 Q ss_pred ccCcccCCCCCceeecccCCcccccccccccccCCcEEEEEeccc Q FBpp0308936 939 YCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDSKLIILCVEALS 983 (1022) Q Consensus 939 ~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C~~~~~~lCve~~~ 983 (1022) ||++|+|++.+++|+||+|++++||.|+.+||+++||||||||+. T Consensus 241 ~C~~Wrs~~~~~~G~As~l~~g~ll~q~~~sC~~~~ivLCiE~~~ 285 (286) T PF06482_consen 241 YCEAWRSSDPAVTGQASSLQSGKLLDQQPYSCSNSFIVLCIENSF 285 (286) T ss_dssp BHHHHB---TTSEEEEEEGGGTBSS--EEEETTS-BB-EEEESS- T ss_pred cccccccCCCCceEeeeecCCCCcccCCcccCCCceEEEEEeccc Confidence 999999999999999999999999999999999999999999974No 2>PF07588 DUF1554: Protein of unknown function (DUF1554); InterPro: IPR011448 This is a domain that occurs in 1-2 copies in a family of proteins identified in Leptospira interrogans and other bacteria. The function of the proteins is not known. Probab=99.72 E-value=3.2e-18 Score=165.09 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=97.2 Q ss_pred CCCCCCCCccchhhHHHHHHHhhcC--CCCceeEEeeccccCcccc-cCCCCCCCccccCCCcEEecCccccccCCCC-c Q FBpp0308936 823 EPSTGDLQGIRGADFACYRQGRRAG--LLGTFKAFLSSRVQNLDTI-VRPADRDLPVVNTRGDVLFNSWKGIFNGQGG-F 898 (1022) Q Consensus 823 ~~~~G~~~Gi~GAD~~C~~~a~~~g--~~gt~rA~Ls~~~~~~~~~-v~~~dr~~p~vn~~g~vl~~~~~~l~~~~~~-~ 898 (1022) ..|+|||+||.|||++|++.+.+.. ..++|||||++.+...+.+ +.++-. ....||||.+|.+|++. ++. + T Consensus 2 ~~~~GnlGGi~GADa~C~~d~~~p~~~~~~~yKAml~~~~~~~R~a~~t~n~~----~g~~DWVl~pnt~Y~r~-dgt~i 76 (135) T PF07588_consen 2 NTYNGNLGGISGADAKCNADANKPSPGGGGTYKAMLVDGSNSTRRACVTANCG----DGQIDWVLKPNTTYYRS-DGTTI 76 (135) T ss_pred ccccCcccchhhHhHHHHcCCCCCCCCCCcCeEEEEEcCccccceeecCCCCC----CCcccceecCCceEEec-CCCEE Confidence 4689999999999999998887654 5679999999976522222 222222 22789999999999998 555 7 Q ss_pred ccCCCc-eeecCCCccCCCCCC-CcceEEecCCCCcccccCcccCcccCCCCCceeecccCC Q FBpp0308936 899 FSQAPR-IYSFSGKNVMTDSTW-PMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLD 958 (1022) Q Consensus 899 ~~~~~~-i~~f~~~~~~~~~~~-~~k~vw~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~ 958 (1022) |++++. ||+|+ |++++- ..+.+|||++.+++... .+|++|+++....+|.....+ T Consensus 77 ~tTn~~glf~f~----l~~~i~~~~~~~WTGl~~~Wt~~~-~~C~~Wt~~s~~~~G~~G~~n 133 (135) T PF07588_consen 77 FTTNSNGLFDFP----LSNPISGTSGTIWTGLNSDWTTAT-NNCNNWTSGSSGVTGAYGSSN 133 (135) T ss_pred EecCCCceEccc----ccceecCCCccEEEeECCCCeeCC-CcccCCcCCCCcccccccccc Confidence 777776 99997 455443 48999999999987774 899999999988777766544No 3>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3SH4_A 3SH5_A 2C5D_A 4RA0_A 1H30_A .... Probab=98.64 E-value=1.9e-07 Score=86.77 Aligned_cols=114 Identities=14% Similarity=0.205 Sum_probs=84.3 Q ss_pred CCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEeeccCCcceeEeeeecccCCCCeeEEEEEEeCCeEEEEEcCc Q FBpp0308936 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (1022) Q Consensus 98 ~~~~g~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~ladg~WHrlaLsV~g~~VtLyVDC~ 177 (1022) ....+.||.+.+. +...+|.|.|... .|.|.|..... ......+...+.|++||+|.|..+.+.++|+|||. T Consensus 4 ~~~~glLl~~~~~-~~~~~~~l~l~~g-----~l~~~~~~~~~--~~~~~~~~~~~~dg~wh~v~v~~~~~~~~l~vd~~ 75 (127) T PF02210_consen 4 RQPNGLLLYIGSQ-NSSDFLALELRNG-----RLVFRYNLGGE--EEISLFSPRNVNDGEWHSVSVRRSGNNVTLSVDDN 75 (127) T ss_dssp SSSSEEEEEEEES-TTSEEEEEEEETT-----EEEEEEESSSS--EEEEEESSSCCTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCEEEEEEcCC-CCCeEEEEEEECC-----EEEEEEEeecc--ceeeccccccccchheeeeeeeeeeeeeeeccCCc Confidence 5667899999996 5578999999865 47777765521 12333446788899999999999999999999999 Q ss_pred cceeeeccCCCcceeccCCeeEEEEeccccc-------CCccccceeeeEE Q FBpp0308936 178 LRNTTLVTREPIELVFDSASTLYIGQAGSII-------GGKFEGYLEKINV 221 (1022) Q Consensus 178 ~~~t~~l~r~~~~l~~~~~~~l~iGq~g~~~-------~~~F~G~LQ~L~i 221 (1022) .............+ .....+|||...... ...|+|-|++|+| T Consensus 76 ~~~~~~~~~~~~~~--~~~~~l~iGg~~~~~~~~~~~~~~~F~GCi~~l~i 124 (127) T PF02210_consen 76 RVMSSPSSSSSQQL--NFDGSLYIGGIPNDFSSPGSDTQPGFVGCIRDLKI 124 (127) T ss_dssp EEEEEESSSTTHCB--ESEEEEEESSTTTTCTTTTSSTTSB-EEEEEEEEE T ss_pred ceeeeccCCCcccc--ccCCcEEECcccCccccccccCCCCCEEEECeEEE Confidence 98886665543333 335569999874322 3579999999987No 4>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 1N1Y_A 1MZ6_A 1MZ5_A 2A75_A 1N1S_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A 2AGS_A .... Probab=98.53 E-value=6e-07 Score=85.09 Aligned_cols=129 Identities=17% Similarity=0.324 Sum_probs=82.2 Q ss_pred ceEEEEEEeecCCCCc--eEEEEEcCCCCeEEEEEEEcccccCceeEEEEEeeccCCcceeEeeeecccCCCCeeEEEEE Q FBpp0308936 87 EFAILITFRQSSLKGG--YLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQ 164 (1022) Q Consensus 87 eFSilaT~R~~~~~~g--~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~ladg~WHrlaLs 164 (1022) +|+|.+++|+...... .||. ...++ ..+.|.+... ..+.|.+....... ........+..++||+|+|. T Consensus 18 ~~Ti~~w~k~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~W~~va~~ 88 (152) T PF13385_consen 18 DFTISFWVKPDSPSSSDQFIFS--SSNDN-SGFSLFIDSS----GSLQFRVSNGNGTW--YSVTSDTPLSPGQWHHVAIT 88 (152) T ss_dssp SEEEEEEEEESS-SSSEEEEEE--SCCTS-EEEEEEEETT----SCEEEEECCSECCS--CEEE-CS---TT-EEEEEEE T ss_pred CEEEEEEEEECCCCCcceEEEE--eCCCC-CEEEEEEeCC----CEEEEEEECCCCce--EEEEecccccCCcEEEEEEE Confidence 9999999999766653 3444 32233 6777777543 25777776553222 23334566778999999999 Q ss_pred EeCCeEEEEEcCccceeeeccCCCcceeccCCeeEEEEecccccCCccccceeeeEEeeCcccc Q FBpp0308936 165 VLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (1022) Q Consensus 165 V~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~iGq~g~~~~~~F~G~LQ~L~i~~dp~~a 228 (1022) +.+..++||||.+++.+..+... ........++||... .....|.|.|.+|+|+..+... T Consensus 89 ~~~~~~~~yvnG~~~~~~~~~~~---~~~~~~~~~~iG~~~-~~~~~f~G~i~~v~i~~~alt~ 148 (152) T PF13385_consen 89 YDGGTVRLYVNGKLVGSSTNTGN---FSSSSSSPLTIGASS-WGSRYFKGYIDEVRIYDRALTP 148 (152) T ss_dssp EETTEEEEEETTEEEEEETCES----SSTCCCCEEEESS-T-TTT---EEEEEEEEEESS---H T ss_pred EccceeeeEEcceEEEEEEeeec---ccCCCceeEEEeecC-CCCCceEEEEEEEEEECCcCCh Confidence 99999999999999988755443 212346789999984 2356799999999999876543No 5>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 2C5D_A 4RA0_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A 1F5F_A .... Probab=97.74 E-value=0.00024 Score=66.50 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=77.0 Q ss_pred cCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEeeccCCcceeEeeeecccCCCCeeEEEEEEeCCeEEEEEcC Q FBpp0308936 97 SSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDC 176 (1022) Q Consensus 97 ~~~~~g~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~ladg~WHrlaLsV~g~~VtLyVDC 176 (1022) +....+.||-.-+. +...+|.|.|..- .|.|.|...++ ...+.....+.|++||+|.+......++|.||. T Consensus 3 T~~~~GlLly~~~~-~~~df~~l~L~~G-----~l~~~~~~G~g---~~~~~~~~~i~dg~wh~i~~~r~~~~~~l~Vd~ 73 (131) T PF00054_consen 3 TTSPNGLLLYLGSK-DESDFLALELVNG-----RLEFRYNLGGG---PVTLQSPQKINDGKWHTIEVERNGRNGSLQVDG 73 (131) T ss_dssp ESSSSEEEEEEESS-TTSSEEEEEEETT-----EEEEEEESSSE---EEEEEECSETTSSSEEEEEEEEETTEEEEEETT T ss_pred cCCCCceEEECCcC-CCCCEEEEEeeCC-----EEEEEEecCCc---ceeeccCccccCCCeEEEEeeccceeEEEEEcC Confidence 34566888866554 4457899999765 58888865543 234444556889999999999999999999998 Q ss_pred ccceee--eccCCCcceeccCCeeEEEEecc-c-------ccCCccccceeeeEEe Q FBpp0308936 177 ELRNTT--LVTREPIELVFDSASTLYIGQAG-S-------IIGGKFEGYLEKINVY 222 (1022) Q Consensus 177 ~~~~t~--~l~r~~~~l~~~~~~~l~iGq~g-~-------~~~~~F~G~LQ~L~i~ 222 (1022) +...+. ...... .+.+ ...||||--. . .....|+|=|++|+|- T Consensus 74 ~~~~~~~~~~~~~~-~l~~--~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in 126 (131) T PF00054_consen 74 EEPVTGSSPSGATS-QLDF--SDPLYVGGLPSSSSPPRIFVSSPGFKGCIRDLKIN 126 (131) T ss_dssp SEEEEEEECSSSSS-TEEE--CSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEET T ss_pred ccceeEEeeccccc-cccc--CCcEEEeCCCchhccccccCcCCCeeEEEEEeEEC Confidence 887432 222222 2433 3459998764 1 1113599999999884No 6>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 4AVV_C 4AYU_A 4AVT_J 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B .... Probab=97.69 E-value=0.00038 Score=70.21 Aligned_cols=126 Identities=19% Similarity=0.254 Sum_probs=82.0 Q ss_pred CcceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEeeccCCcceeEeeeecccCCCCeeEEEEE Q FBpp0308936 85 LYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQ 164 (1022) Q Consensus 85 ~~eFSilaT~R~~~~~~g~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~ladg~WHrlaLs 164 (1022) |.+|+|-+++|....+.++|||..... ....|-+..+.. ..+.|+.. + ....|.+...+.+||+|.++ T Consensus 24 L~~fTvC~w~~~~~~~~~tifSYa~~~-~~nell~~~~~~----~~~~l~i~--g-----~~~~~~~~~~~~~WhhvC~t 91 (194) T PF00354_consen 24 LSAFTVCFWVRTDLSNSGTIFSYATSS-NDNELLLFISSN----GGFELYIN--G-----SSISFSVSPSDLQWHHVCVT 91 (194) T ss_dssp BSEEEEEEEEEESGSS-EEEEEEEETT-EEEEEEEEEETT----TEEEEEET--T-----EEEEEEECCECSSEEEEEEE T ss_pred cccEEEEEEEEEcCCCceEEEEeecCC-CCcceEEEEeCC----CeEEEEEC--C-----cEEEEecccCCCCCEEEEEE Confidence 349999999999888889999998863 223333333322 23444432 2 23345555667799999998 Q ss_pred EeC--CeEEEEEcCccceeeeccCCCcceeccCCeeEEEEeccc------ccCCccccceeeeEEeeCc Q FBpp0308936 165 VLS--DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS------IIGGKFEGYLEKINVYGNP 225 (1022) Q Consensus 165 V~g--~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~iGq~g~------~~~~~F~G~LQ~L~i~~dp 225 (1022) -+. ..+.||+|-+...+..+.+ ...+..++.+.|||.-. .....|.|+|.+|+|-... T Consensus 92 W~s~~G~~~ly~dG~~~~~~~~~~---g~~i~~gG~~vlGQeQd~~gGgf~~~qsf~G~is~~~iWd~v 157 (194) T PF00354_consen 92 WDSSTGSWQLYVDGERVSSGGLAK---GYSIPPGGTLVLGQEQDSYGGGFDSSQSFVGEISDVNIWDRV 157 (194) T ss_dssp EETTTTEEEEEETTEEEEEEESST---T--B-SSEEEEESS-BSBTTBTCSGGGB--EEEEEEEEESS- T ss_pred cccCCccEEEEeCCEeeeeeeccC---CceECCCCEEEEEEcccCCCCccCcccccceEEeeEEEEeee Confidence 765 7999999999887765543 23466788999999721 1225699999999998775No 7>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 4FQ4_A 4FPJ_A 4FPO_B 4FOW_A 2VW2_A 4FPL_A 4FPE_A 4FPC_A 2VW0_A 4FOY_A .... Probab=97.52 E-value=0.00086 Score=66.79 Aligned_cols=136 Identities=14% Similarity=0.146 Sum_probs=86.4 Q ss_pred CcceEEEEEEeecCCCCc-eEEEEEcCCCCeEEEEEEEcccccCceeEEEEEeeccCCcceeEeee-ecccCCCCee--- Q FBpp0308936 85 LYEFAILITFRQSSLKGG-YLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-GVAHVPDKWN--- 159 (1022) Q Consensus 85 ~~eFSilaT~R~~~~~~g-~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~~~~sF-~v~ladg~WH--- 159 (1022) |-+++|++.||++..+.- .||+|.+......||-|.+... +|-+.+++..+......... .+.+..++|+ T Consensus 30 L~~gTI~v~Fk~t~~~~~qsLfsiSns~~~n~yF~lyi~~~-----~lG~E~R~~~~~~~y~~~~~~~a~v~~~~~~~~~ 104 (189) T PF02973_consen 30 LEEGTIVVEFKPTSKSGIQSLFSISNSKKGNEYFHLYIRNN-----TLGFELRDQSGNQFYLSSRPAPASVWGGYWNSVT 104 (189) T ss_dssp -SSEEEEEEEEESSSSSEEEEEEEE-SSTTTEEEEEEEETT-----EEEEEEEETTTTBCEEEEET-SSB--TECTCEEE T ss_pred ccceEEEEEEecCCCCceeEEEEecCCCCCCceEEEEEECC-----EEEEEEccCCCCccccccccchhhccccccCCce Confidence 449999999999665533 4999999888889999999775 58888888775442222222 2555677997 Q ss_pred --EEEEEEe--CCeEEEEEcC-ccceeeeccCCCcceeccCCeeEEEEecccccC--CccccceeeeEEeeCccc Q FBpp0308936 160 --SIALQVL--SDKVSFYYDC-ELRNTTLVTREPIELVFDSASTLYIGQAGSIIG--GKFEGYLEKINVYGNPDA 227 (1022) Q Consensus 160 --rlaLsV~--g~~VtLyVDC-~~~~t~~l~r~~~~l~~~~~~~l~iGq~g~~~~--~~F~G~LQ~L~i~~dp~~ 227 (1022) .++|.+. ...++||+|. -.+.+....+.+.+ +..--.++||...+... --|.|.|.+|+||..+-. T Consensus 105 ~ntva~~ad~~~~~yklY~NG~l~~~s~~~~~Fi~d--i~~~n~~~lG~t~R~~~~~y~F~G~I~n~~iYn~aLs 177 (189) T PF02973_consen 105 FNTVAFVADSPNKGYKLYVNGVLSVFSKKSGKFISD--IPGLNSVQLGGTKRAGSNAYGFNGTIDNLKIYNRALS 177 (189) T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEESTSS-GGG--STT--EEEESSEEETTEEES--EEEEEEEEEESS--- T ss_pred EEEEEEeecCCCceEEEEEccEEEEEecchhhHhhc--CCCCceEEEeeeEeCCCcccCcccEEEEEEEECCcCC Confidence 6777775 5799999999 22222333333333 33445788887632221 358999999999988744No 8>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains []. This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif []. The role of this domain in receptor binding appears to be indirect. ; GO: 0004222 metalloendopeptidase activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 3RSJ_B 3FUQ_A 1DFQ_A 1A8D_A 1FV3_A 1YXW_A 1DLL_A 1D0H_A 1YYN_A 1FV2_A .... Probab=94.46 E-value=0.18 Score=49.28 Aligned_cols=123 Identities=11% Similarity=0.205 Sum_probs=75.1 Q ss_pred CceEEccCCCCCcceEecCCCc---cCCchhhccCCCCc-ceEEEEEEeecCCC-------CceEEEEEcCCCCeEEEEE Q FBpp0308936 51 AGIEFGEAEDGFPAFRFLQTAD---VKSPYRMLLPEKLY-EFAILITFRQSSLK-------GGYLFSVVNPLDTVVQLGV 119 (1022) Q Consensus 51 ~GV~~v~G~d~~pAy~f~~~a~---l~~pt~~~fP~~~~-eFSilaT~R~~~~~-------~g~LfsV~~~~~~~~qlgl 119 (1022) ..|.++. -..-||++..... .......+|=+.+. .|||.+|+|-.+.. .-+|+.=.. +.-=..| T Consensus 18 ~~v~l~~--in~n~~~L~~s~~s~v~v~~~n~i~yn~~~nnFSIsFWlRi~k~~~~~~~~neytII~~~~---nnsGWkI 92 (195) T PF07953_consen 18 GDVQLNY--INNNQFKLYSSNQSEVIVIQNNNIFYNSMYNNFSISFWLRIPKYDNNINLHNEYTIINCMK---NNSGWKI 92 (195) T ss_dssp TTEEEES--SSTTEEEEESSTTCEEEEEEETTGSCSCSSSEEEEEEEEEEECHHSCHHTTSEEEEEEEEE---TTEEEEE T ss_pred CCEEEEE--cCcceEEEccCCcccEEEEecceEEEeccccceeEEEEEEcCCcccccccccceEEEEecc---CCCceEE Confidence 4455544 3345677775544 22335666667788 99999999974321 223554332 1233345 Q ss_pred EEcccccCceeEEEEEeeccCCcceeEeeeecc----cCC--CCeeEEEEEEeC-CeEEEEEcCccceeeecc Q FBpp0308936 120 HLSPVVKNSYNVSLVYTQADQNIGRKLASFGVA----HVP--DKWNSIALQVLS-DKVSFYYDCELRNTTLVT 185 (1022) Q Consensus 120 ~l~~~~~~~~~i~L~Y~~~~~~~~~~~~sF~v~----lad--g~WHrlaLsV~g-~~VtLyVDC~~~~t~~l~ 185 (1022) .|... .+.|...+..+ .++...|++. ++| .+||.+++++.. ....||+|-+++....+. T Consensus 93 ~l~~n-----~lI~tl~D~ng--~~k~i~f~y~~~~~~sdyiNkW~fItIt~~rL~~~~IYING~L~~~~~I~ 158 (195) T PF07953_consen 93 SLRNN-----NLIWTLQDSNG--NEKNIYFRYSESISISDYINKWHFITITNNRLGNSKIYINGKLIDNESIK 158 (195) T ss_dssp EEETT-----EEEEEEEETTS--EEEEEEEESSSTSSTTSSTTSEEEEEEEEETTSEEEEEETTEEEEEEE-T T ss_pred EEeCC-----eEEEEEEccCC--ceEEEEEEeeccCChhHhccceEEEEEEeccCCcceEEECCEEEeccchh Confidence 55544 35555554433 2355566432 222 799999999999 777999999999887664No 9>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 4JQT_A 3OSD_A 4QHZ_B 3HBK_A 3H3L_A 3NMB_A 3S5Q_A 4HXC_A 3U1X_A .... Probab=91.37 E-value=0.077 Score=51.40 Aligned_cols=103 Identities=20% Similarity=0.337 Sum_probs=59.4 Q ss_pred hccCCCCc-ceEEEEEEee-cCCCCceEEEEEc---CCCCeEEEEEEEcccccCceeEEEEEeeccCCcc-----eeEee Q FBpp0308936 79 MLLPEKLY-EFAILITFRQ-SSLKGGYLFSVVN---PLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIG-----RKLAS 148 (1022) Q Consensus 79 ~~fP~~~~-eFSilaT~R~-~~~~~g~LfsV~~---~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~-----~~~~s 148 (1022) .++-+..+ +|.|-+.+|. ...+.+++|...+ ..+....+.+.|...... ....... +... ....+ T Consensus 45 ~l~~~~~~~df~l~~d~k~~~~~~~gi~~r~~~~~~~~~~~~gy~~~i~~~~~~----~~~~~~~-G~~~~~~~~~~~~~ 119 (185) T PF06439_consen 45 YLYTDKEFSDFTLEVDFKITPGGNSGILFRAQDNGENQDPNNGYEVQIDNSGRG----SKLNRST-GSIYGEIEKNVEAS 119 (185) T ss_dssp EEEESSEBSSEEEEEEEEEGTTSEEEEEEEESTECESSGGGTSEEEEEE-TTTC----STTTTST-TSBTTTBETTB-SS T ss_pred EEEECCCCCCEEEEEEEEEcCCCcceEEEEeccccCCCccceEEEEEEeCccCc----cccCccc-ceEeeeeecccccc Confidence 33333335 9999999995 5567777777661 112233444555543110 0000011 1111 11223 Q ss_pred eecccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccC Q FBpp0308936 149 FGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (1022) Q Consensus 149 F~v~ladg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r 186 (1022) ..+.+..++||+|.|.|.+++|++|||-.++.+...++ T Consensus 120 ~~~~~~~~~W~~~~I~~~g~~i~v~vNG~~v~~~~d~~ 157 (185) T PF06439_consen 120 VNVAFKPGQWNTVRIEVKGNRITVYVNGKLVLEFTDPD 157 (185) T ss_dssp SCGS--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS T ss_pred cccccCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC Confidence 35566688999999999999999999999997755543No 10>PF16346 DUF4975: Domain of unknown function (DUF4975) Probab=75.87 E-value=14 Score=35.52 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=72.1 Q ss_pred ceEecCCCccCCchhhccCCCCc-ceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEeeccCCc Q FBpp0308936 64 AFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNI 142 (1022) Q Consensus 64 Ay~f~~~a~l~~pt~~~fP~~~~-eFSilaT~R~~~~~~g~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~ 142 (1022) .|.|... +.-+|+ .|+ .+-|.+|++.......+=|++....+....+.|.++....++.++.|.=+...+.. T Consensus 37 ~~~l~~~------~~v~f~-~L~~~~kIs~ti~~~~~~~~FGi~f~~~~d~~~~Y~i~~np~~~~~~~~~f~~~~~~~~~ 109 (176) T PF16346_consen 37 GYTLSGN------AYVLFN-RLPGTNKISATIKFSEGTDKFGISFRRDSDSEEGYYIRFNPENNNRNRLNFENEGNIGKG 109 (176) T ss_pred eEEEecc------eEEEec-cCCCceEEEEEEEeCCCCCeEEEEEEECCCccccEEEEEeeccccceEEEEEecCccccc Confidence 4766652 223444 355 88899999988777766555555557788888999987433445555222221111 Q ss_pred -ceeEeeeecccCCCCeeEEEEEEeCCeEEEEEcCcccee Q FBpp0308936 143 -GRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNT 181 (1022) Q Consensus 143 -~~~~~sF~v~ladg~WHrlaLsV~g~~VtLyVDC~~~~t 181 (1022) .+....+.+.+..++=.+|.|-++++-+.||||-+-..+ T Consensus 110 ~~~~~~~~~~~~~a~~~y~v~I~~d~SV~v~YVNd~vAlT 149 (176) T PF16346_consen 110 FIQGIDEYPFELPADNEYHVKIVIDNSVCVVYVNDEVALT 149 (176) T ss_pred ccccccceeeecCCCCEEEEEEEEcCCEEEEEECCeEEEE Confidence 111223345666788899999999999999998877655No 11>PF14099 Polysacc_lyase: Polysaccharide lyase; InterPro: IPR025975 This family includes heparin lyase I (4.2.2.7 from EC). Heparin lyase I depolymerises heparin by cleaving the glycosidic linkage next to an iduronic acid moiety [, ]. The structure of heparin lyase I consists of a beta-jelly roll domain with a long, deep substrate-binding groove and an unusual thumb domain containing many basic residues extending from the main body of the enzyme []. This family also includes glucuronan lyase, (4.2.2.14 from EC) []. The structure glucuronan lyase is a beta-jelly roll [].; PDB: 2ZZJ_A 3IKW_A 3ILR_A 3INA_A 3IMN_A 3IN9_A. Probab=74.50 E-value=8.1 Score=37.49 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=44.0 Q ss_pred CceEEEEEcCCCC----eEEEEEEEcccccCceeEEEEEeeccCCcce--eEeee-ecccCCCCeeEEEEEEeC-----C Q FBpp0308936 101 GGYLFSVVNPLDT----VVQLGVHLSPVVKNSYNVSLVYTQADQNIGR--KLASF-GVAHVPDKWNSIALQVLS-----D 168 (1022) Q Consensus 101 ~g~LfsV~~~~~~----~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~--~~~sF-~v~ladg~WHrlaLsV~g-----~ 168 (1022) ...|+++....+. ..-|.|.+... ...+.+.+......... ....+ ..++.-|+||+|.|.|.= . T Consensus 84 ~~~i~Q~~~~~~~~~~~~P~~~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~~~~i~~s~~~~G 160 (212) T PF14099_consen 84 WFIIFQWHGSPDGEQSGSPPLALRISGG---RLYLRVRNDDNTSNPNTSNIARYIPSAPIPRGKWHDFVVHIKWSPDGDG 160 (212) T ss_dssp EEEEEEEEEE-TTSSSEEECEEEEEETT---EEEEEEEEE--ETTCEEEEEEEEEECCCS-TTSEEEEEEEEEE-CCTCE T ss_pred eeEEEEEEeCCCCCCCCCCeEEEEEECC---EEEEEEEcCCCCcccccceeeEeeccCccCCCCEEEEEEEEEECCCCCE Confidence 4457777765444 56777777443 33333333333101101 11122 456778999999999922 4 Q ss_pred eEEEEEcCcccee Q FBpp0308936 169 KVSFYYDCELRNT 181 (1022) Q Consensus 169 ~VtLyVDC~~~~t 181 (1022) .|.|++|-+++.. T Consensus 161 ~i~vw~nG~~v~~ 173 (212) T PF14099_consen 161 YIEVWVNGKLVVD 173 (212) T ss_dssp EEEEEECCEEEEE T ss_pred EEEEEECCEEEEE Confidence 7999999977644No 12>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0030246 carbohydrate binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 2YMZ_A 4LBQ_D 4NO4_A 4GA9_A 3M2M_F .... Probab=64.42 E-value=43 Score=29.46 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=65.8 Q ss_pred hccCCCCc-ceEEEEEEeecCCCCceEEEEEcC--CCCeEEEEEEEcccccCceeEEEEEeeccCCcceeEe-eeecccC Q FBpp0308936 79 MLLPEKLY-EFAILITFRQSSLKGGYLFSVVNP--LDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLA-SFGVAHV 154 (1022) Q Consensus 79 ~~fP~~~~-eFSilaT~R~~~~~~g~LfsV~~~--~~~~~qlgl~l~~~~~~~~~i~L~Y~~~~~~~~~~~~-sF~v~la 154 (1022) .-||..|. .=+|.++-+.......+-+.+... ......+.|.++.+-. ...|.+.+...+. +.+.-. .-..++. T Consensus 4 ~~l~~~l~~G~~i~I~G~~~~~~~~F~i~l~~~~~~~~~~~i~lh~~~r~~-~~~iv~Ns~~~g~-W~~ee~~~~~~pf~ 81 (134) T PF00337_consen 4 GPLPGGLEPGDSIIIRGTVPPDAERFSINLQTGPSNEPQDDIALHFNPRFD-ENVIVRNSRINGK-WGQEERSEGPFPFR 81 (134) T ss_dssp EEETTEEETTEEEEEEEEEBTTSSBEEEEEEECTTTTTTTEEEEEEEEETT-TTEEEEEEEETTE-E-SEEEEESSTSST T ss_pred EECCCCCCCCCEEEEEEEECCCCCEEEEEeCCCcCCCCCcEEEEEEEEEeC-chhhhhhheeecc-cccccccceeeeec Confidence 44577775 667777777767777787777775 1122334444444421 2456666655543 333222 2356777 Q ss_pred CCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0308936 155 PDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1022) Q Consensus 155 dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1022) .++=-+|.|.+..+.+.+|||-..+... T Consensus 82 ~g~~F~l~I~~~~~~f~I~vng~~~~~f 109 (134) T PF00337_consen 82 PGQPFELRIVVTEDGFEIYVNGKHFCEF 109 (134) T ss_dssp TTSEEEEEEEEESSEEEEEETTEEEEEE T ss_pred CCCcEEEEEEEecceEEEEECCeEEEEe Confidence 8999999999999999999999877653No 13>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3ILN_A 1UMZ_A 1UN1_B 3HR9_A 1MVE_A 3H0O_A 1ZM1_A 3AXD_B 2R49_A 3AXE_A .... Probab=57.77 E-value=56 Score=30.05 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.5 Q ss_pred ccCCCCeeEEEEEEeCCeEEEEEcCccceee Q FBpp0308936 152 AHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (1022) Q Consensus 152 ~ladg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1022) ...+..||...|....++|.+|||-+++.+. T Consensus 106 ~~~~~~~H~y~v~W~~~~i~fyvDg~~~~~~ 136 (177) T PF00722_consen 106 FDDSNDFHTYGVEWTPDSIRFYVDGKLVRTV 136 (177) T ss_dssp STTTTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred ccccccceEEEEEEeeeeeeeccCCeeEEee Confidence 4557799999999999999999999998774No 14>PF16323 DUF4959: Domain of unknown function (DUF4959) Probab=56.72 E-value=1e+02 Score=30.25 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=10.2 Q ss_pred hhHHHHHHHHHHHhhcccc Q FBpp0308936 5 QGVMFALAMICTLLVPVLG 23 (1022) Q Consensus 5 ~~~~l~~~~~~~~~~~~~~ 23 (1022) ...++++++++++++.|.. T Consensus 2 k~~~~~~~~~~~~l~sC~~ 20 (225) T PF16323_consen 2 KKYLLLLLLALLLLASCKE 20 (225) T ss_pred hhhHHHHHHHHHhEEecCC Confidence 3444555555555555555No 15>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 4CCC_A 3ZR6_A 4CCE_A 4CCD_A 3ZR5_A. Probab=52.39 E-value=39 Score=38.49 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=31.7 Q ss_pred ecccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccCCCcceeccCCeeEEEEec Q FBpp0308936 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQA 204 (1022) Q Consensus 150 ~v~ladg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~iGq~ 204 (1022) .+.+..++||+|+|.|+++.++-|||-..+-+.. + ..+...+.+-||.. T Consensus 605 ~~~~~~~~WhtLtL~~~g~~~~g~lng~~l~~~~-~-----~~~p~~G~aaiGT~ 653 (669) T PF02057_consen 605 KAGVGAGRWHTLTLTVKGSSITGSLNGTVLWTNV-P-----VSFPKNGWAAIGTS 653 (669) T ss_dssp E-S--SS-EEEEEEEEETTEEEEEETTEEEEEEE-E-------SS---EEEEEES T ss_pred EeccCCCceEEEEEEEEccEEEEEECCEEEEEec-c-----cCCCCCceEEEEcC Confidence 4566678999999999999999999998775422 1 11334567778876No 16>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1UAI_A 1VAV_B 3ZPY_B 4BE3_B 4Q8L_B 4Q8K_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A .... Probab=50.86 E-value=79 Score=31.04 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=55.0 Q ss_pred EEEEEEeecC--CC------CceEEEEEcCC--CCeEEEEEEEcccc-cCceeEEEEEeecc-CCcceeEeeeecccCCC Q FBpp0308936 89 AILITFRQSS--LK------GGYLFSVVNPL--DTVVQLGVHLSPVV-KNSYNVSLVYTQAD-QNIGRKLASFGVAHVPD 156 (1022) Q Consensus 89 SilaT~R~~~--~~------~g~LfsV~~~~--~~~~qlgl~l~~~~-~~~~~i~L~Y~~~~-~~~~~~~~sF~v~ladg 156 (1022) .|.++++... .. .-+|-+|.... .....|.|...... ...-.|.+.+.... .........+. .+.-| T Consensus 86 ~l~a~l~V~~~~~~~~~~~~~viigQIH~~~~~~~~pllkl~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-~i~LG 164 (236) T PF08787_consen 86 TLEATLAVTQVPSGGKSNNPRVIIGQIHGKDGGSNPPLLKLYYRKEPGNEKGSVYAYVKDNNPDGGDISSNVYG-GIPLG 164 (236) T ss_dssp EEEEEEEEEE-TTTSCTTTCEEEEEEEEESSSTSCEEEEEEEEEESTTTESSEEEEEEESSTCTTSEEEEEEEE-EEETT T ss_pred EEEEEEEEEecCCCCCceeeeEEEEEEecCCCCCCccEEEEEEEEeeccCCCeEEEEEeccCCCCCceEEEeEc-CccCC Confidence 7888888732 22 13466777753 35666667663210 01225777776221 11111222221 33457 Q ss_pred CeeEEEEEEeCCeEEEEEcCccceee Q FBpp0308936 157 KWNSIALQVLSDKVSFYYDCELRNTT 182 (1022) Q Consensus 157 ~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (1022) +|-++.|.|.+..|+++|+++..... T Consensus 165 ~~F~y~I~v~~~~l~V~~ng~~~~~~ 190 (236) T PF08787_consen 165 EKFSYEIRVSNGTLTVYVNGEGKSTT 190 (236) T ss_dssp -EEEEEEEEETTEEEEEETTEEEEEE T ss_pred CEEEEEEEEeCCEEEEEEECCCceEE Confidence 99999999999999999999987664No 17>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM. Probab=32.05 E-value=18 Score=39.08 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.4 Q ss_pred ecccCCCCeeEEEEEEeCCeEEEEEcCccceeeeccC Q FBpp0308936 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (1022) Q Consensus 150 ~v~ladg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r 186 (1022) .+++-++.|.++.|.+.+++|.|.++-+.+..+.|+- T Consensus 83 ~~~l~~~~wN~v~l~~~g~~v~~~lN~~~i~~~~~~~ 119 (411) T PF07622_consen 83 PLPLKDNAWNRVKLQRSGDTVQLHLNGQLIYERPLDP 119 (411) T ss_pred CCCCCcccccEEEEEEeCCEEEEEECCeEEEEEecCC Confidence 4677899999999999999999999999999987764No 18>PF11267 DUF3067: Domain of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A. Probab=28.74 E-value=12 Score=32.43 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.4 Q ss_pred cChHHHHHHHHhhh Q FBpp0308936 1008 KTADEYAAHLENLL 1021 (1022) Q Consensus 1008 ~~~~~~~~~~~~~~ 1021 (1022) +||+||.+||+.+. T Consensus 42 ltE~eY~~hL~~ia 55 (98) T PF11267_consen 42 LTEEEYLEHLDAIA 55 (98) T ss_dssp S-HHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH Confidence 69999999999864No 19>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown. Probab=20.01 E-value=1.2e+02 Score=25.14 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=34.7 Q ss_pred hhccCCCCcceEEEEEEeecCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEe Q FBpp0308936 78 RMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYT 136 (1022) Q Consensus 78 ~~~fP~~~~eFSilaT~R~~~~~~g~LfsV~~~~~~~~qlgl~l~~~~~~~~~i~L~Y~ 136 (1022) +..|+++...|||+.- .-.+.+++|.-. .+..+|.|+|++.+ .+.+.|+|. T Consensus 16 rr~~~qg~rsFsli~g-----rL~gIil~i~~~-n~~i~lslkvnpNn--~~H~~ly~~ 66 (91) T PF06523_consen 16 RRYFEQGERSFSLING-----RLRGIILTIKCS-NGIIYLSLKVNPNN--INHILLYHK 66 (91) T ss_pred hhhhhccceEEEEEec-----eeeeEEEEEEec-CCeEEEEEEECCCC--ceeEEEEec Confidence 4555555557887753 345788888875 77899999999973 445444444