Query FBpp0308937 type=protein; loc=3L:join(7012190..7012289,7012739..7013277,7033869..7033964,7034972..7035038,7035170..7035315,7035744..7035881,7038005..7038151,7041018..7041131,7043466..7043720,7044926..7045003,7045109..7045355,7046334..7046488,7046586..7046678,7048842..7048964,7050565..7050695,7051242..7051421,7051486..7051722,7051977..7052052); ID=FBpp0308937; name=Mp-PU; parent=FBgn0260660,FBtr0339905; dbxref=GB_protein:AHN57987,REFSEQ:NP_001286962,FlyBase:FBpp0308937,FlyBase_Annotation_IDs:CG42543-PU; MD5=27e96745b80e96e124d1411d4ea214e9; length=973; release=r6.06; species=Dmel; Match_columns 973 No_of_seqs 680 out of 2743 Neff 6.4 Searched_HMMs 16187 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF06482 Endostatin: Collagena 100.0 9.7E-76 6E-80 625.7 12.0 254 681-934 1-285 (286) 2 PF07588 DUF1554: Protein of u 99.7 3.4E-18 2.1E-22 164.0 8.3 126 774-909 2-133 (135) 3 PF02210 Laminin_G_2: Laminin 98.5 9.5E-07 5.9E-11 81.4 13.8 114 98-221 4-124 (127) 4 PF13385 Laminin_G_3: Concanav 98.4 2.6E-06 1.6E-10 80.0 14.2 130 86-228 17-148 (152) 5 PF00054 Laminin_G_1: Laminin 97.5 0.00093 5.8E-08 62.0 14.0 114 98-222 4-126 (131) 6 PF00354 Pentaxin: Pentaxin fa 97.3 0.0018 1.1E-07 64.7 15.2 128 85-227 24-159 (194) 7 PF02973 Sialidase: Sialidase, 97.2 0.002 1.2E-07 63.8 13.8 135 85-228 30-178 (189) 8 PF07953 Toxin_R_bind_N: Clost 91.1 1.2 7.5E-05 43.0 12.4 115 62-186 27-159 (195) 9 PF06439 DUF1080: Domain of Un 88.5 0.15 9.4E-06 48.8 3.8 97 85-186 52-157 (185) 10 PF16346 DUF4975: Domain of un 71.8 22 0.0013 33.8 12.4 113 64-182 37-150 (176) 11 PF14099 Polysacc_lyase: Polys 70.1 8.3 0.00051 37.2 9.2 78 101-181 84-173 (212) 12 PF02057 Glyco_hydro_59: Glyco 60.8 48 0.003 37.5 14.2 49 150-204 605-653 (669) 13 PF00722 Glyco_hydro_16: Glyco 54.4 54 0.0033 29.9 11.6 31 152-182 106-136 (177) 14 PF12988 DUF3872: Domain of un 48.0 33 0.002 31.1 8.2 36 130-167 97-132 (133) 15 PF00337 Gal-bind_lectin: Gala 40.5 1.2E+02 0.0074 26.1 11.7 101 79-182 4-109 (134) 16 PF08787 Alginate_lyase2: Algi 40.5 1.1E+02 0.0069 29.7 11.9 91 89-182 86-190 (236) 17 PF16323 DUF4959: Domain of un 39.1 1.9E+02 0.012 27.9 14.5 14 154-167 188-201 (225) 18 PF07622 DUF1583: Protein of u 37.8 24 0.0015 37.9 6.4 37 150-186 83-119 (411) 19 PF05018 DUF667: Protein of un 33.1 97 0.006 29.1 9.6 33 147-180 119-164 (185) 20 PF11267 DUF3067: Domain of un 31.2 10 0.00065 32.7 1.8 14 959-972 42-55 (98)No 1>PF06482 Endostatin: Collagenase NC10 and Endostatin; InterPro: IPR010515 NC10 stands for Non-helical region 10 and is taken from P39059 from SWISSPROT. A mutation in this region in P39060 from SWISSPROT is associated with an increased risk of prostrate cancer. This domain is cleaved from the precursor and forms endostatin. Endostatin is a key tumour suppressor and has been used highly successfully to treat cancer. It is a potent angiogenesis inhibitor []. Endostatin also binds a zinc ion near the N terminus; this is likely to be of structural rather than functional importance according to [].; GO: 0005198 structural molecule activity, 0007155 cell adhesion, 0031012 extracellular matrix; PDB: 1DY2_A 1DY1_A 1DY0_A 1KOE_A 3N3F_B 1BNL_D 3HSH_E 3HON_A. Probab=100.00 E-value=9.7e-76 Score=625.66 Aligned_cols=254 Identities=47% Similarity=0.867 Sum_probs=180.5 Q ss_pred CeeEeecCHHHHhhccCCCCCCceEEecccceEEEEEcCCceEeeccccccCCCCCCCCCC----CCCCc-ccccc---- Q FBpp0308937 681 PGAVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLVPIATPAPPTTV----APSMR-FDLQS---- 751 (973) Q Consensus 681 pg~~~~~~~~~m~~~~~~~~~Gtl~y~~~~~~l~vrv~~g~~~i~lg~~~p~~~~~~~~~~----~~~~~-~~~~~---- 751 (973) +|+++|+|+++|+++++..+||||+||+|+++|||||++|||+|+||.++|++...++..+ .++.. ..... T Consensus 1 sGV~vf~T~~~Ml~~a~~~pEGTLayV~e~~eLYVRVrnGWRkV~LG~~ip~~~~~~~~~va~~~p~P~v~~~~~~~~~~ 80 (286) T PF06482_consen 1 SGVTVFRTYETMLATAHRVPEGTLAYVIEREELYVRVRNGWRKVQLGELIPIPSDTPDNEVASTQPPPVVSSPPQSSPPS 80 (286) T ss_dssp --EEEESSHHHHHCHGGGS-TTEEEEETTTTEEEEEETTEEEEE-EEEEEE----------------------------- T ss_pred CCcEEecCHHHHHhhcccCCCeEEEEEEecceEEEEecCCeeeeccCCcccCCCCcccccccccCCCCccccCccccccc Confidence 3799999999999999999999999999999999999999999999999998776542111 11100 00000 Q ss_pred --cCcC--------------CC-----CCCCCCCCceEEEEccCCCCCCCCCcccchhhhHHHhhhcCCCCceeEEEecc Q FBpp0308937 752 --KNLL--------------NS-----PPPLLNTPTLRVAALNEPSTGDLQGIRGADFACYRQGRRAGLLGTFKAFLSSR 810 (973) Q Consensus 752 --~~~~--------------~~-----~~~~~~~~~l~l~a~~~~~~g~~~Gi~GaD~~C~~~a~~~g~~gt~rA~Ls~~ 810 (973) .... .. .........|||||||+|++|||+||+|||++||+|||++|+.||||||||++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~liAlN~P~~G~m~Gi~gAD~~C~~qAr~~gl~gtfRAfLSs~ 160 (286) T PF06482_consen 81 SHPRPPSTAPDPHYPPQPRRPPPPSPSAHTHHDDGPLHLIALNEPLSGNMRGIRGADFQCFRQARAAGLTGTFRAFLSSR 160 (286) T ss_dssp -----------------------------S--TTS-EEEEE-SS-B-SBSSHHHHHHHHHHHHHHHTT--S-EEESS-BT T ss_pred ccCCcccCCCCccCCCCccccCCCCCccccccCCCceEEEEcCCCCCCCccccccccHHHHHHHHHcCCCCceEEeeecc Confidence 0000 00 01122333499999999999999999999999999999999999999999999 Q ss_pred ccCcccccCCCCC-CCccccCCCcEEecCccccccCCCCcccCCCceeecCCCccCCCCCCCcceEEeeCCCCccccccc Q FBpp0308937 811 VQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIFNGQGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDT 889 (973) Q Consensus 811 ~~~~~~~v~~~dr-~~p~~n~~g~vl~~~~~~l~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~k~vw~Gs~~~g~~~~~~ 889 (973) +|||++||++.|| ++||||+||||||+||++||+++++.|+.+++||||||+|||+|++||+|+|||||+++|++..++ T Consensus 161 ~qdL~~iV~~~dr~~~PivNlkgevLf~sw~~lf~g~~~~~~~~~~iySFdGr~v~~d~~wP~K~vWhGs~~~G~r~~~~ 240 (286) T PF06482_consen 161 LQDLYSIVRRADRDNVPIVNLKGEVLFNSWESLFSGSGGPFNPNAPIYSFDGRDVLTDPAWPQKMVWHGSDPRGRRLTDS 240 (286) T ss_dssp TB-GGGGS-GGGTSS--EE-TTS-EEES-HHHHTSSS-SB--TTS--BBTTS-BTTTSTTSSS-EEE--B-TTS-B-TTS T ss_pred cccHhhhccHhhCCCCCeEeCcCCEeecCHHHHhCCCCCCCCCCCcEEeECCccccCCCCcceEEEEeCCCCCCccCCcC Confidence 9999999999999 899999999999999999999998899999999999999999999999999999999999999999 Q ss_pred cccccccCCCCceeecccCCccccccccccccCCCceEEEEeccc Q FBpp0308937 890 YCDAWHSGDHLKGSFASNLDGHKLLEQKRQSCDSKLIILCVEALS 934 (973) Q Consensus 890 ~C~~W~s~~~~~~g~as~~~~~~~~~~~~~~C~~~~~~lCve~~~ 934 (973) ||++|+|++.+++|+||+|++++||.|+.+||+++||||||||+. T Consensus 241 ~C~~Wrs~~~~~~G~As~l~~g~ll~q~~~sC~~~~ivLCiE~~~ 285 (286) T PF06482_consen 241 YCEAWRSSDPAVTGQASSLQSGKLLDQQPYSCSNSFIVLCIENSF 285 (286) T ss_dssp BHHHHB---TTSEEEEEEGGGTBSS--EEEETTS-BB-EEEESS- T ss_pred cccccccCCCCceEeeeecCCCCcccCCcccCCCceEEEEEeccc Confidence 999999999999999999999999999999999999999999973No 2>PF07588 DUF1554: Protein of unknown function (DUF1554); InterPro: IPR011448 This is a domain that occurs in 1-2 copies in a family of proteins identified in Leptospira interrogans and other bacteria. The function of the proteins is not known. Probab=99.72 E-value=3.4e-18 Score=164.01 Aligned_cols=126 Identities=21% Similarity=0.331 Sum_probs=97.2 Q ss_pred CCCCCCCCCcccchhhhHHHhhhc--CCCCceeEEEeccccCcccc-cCCCCCCCccccCCCcEEecCccccccCCCC-c Q FBpp0308937 774 EPSTGDLQGIRGADFACYRQGRRA--GLLGTFKAFLSSRVQNLDTI-VRPADRDLPVVNTRGDVLFNSWKGIFNGQGG-F 849 (973) Q Consensus 774 ~~~~g~~~Gi~GaD~~C~~~a~~~--g~~gt~rA~Ls~~~~~~~~~-v~~~dr~~p~~n~~g~vl~~~~~~l~~~~~~-~ 849 (973) ..|+|||+||.|||++|++.+.+. +..++|||||++.+...+.+ +.++-. ....||||.+|.+|++. ++. + T Consensus 2 ~~~~GnlGGi~GADa~C~~d~~~p~~~~~~~yKAml~~~~~~~R~a~~t~n~~----~g~~DWVl~pnt~Y~r~-dgt~i 76 (135) T PF07588_consen 2 NTYNGNLGGISGADAKCNADANKPSPGGGGTYKAMLVDGSNSTRRACVTANCG----DGQIDWVLKPNTTYYRS-DGTTI 76 (135) T ss_pred ccccCcccchhhHhHHHHcCCCCCCCCCCcCeEEEEEcCccccceeecCCCCC----CCcccceecCCceEEec-CCCEE Confidence 368999999999999999988874 46789999999976522222 222222 22789999999999998 555 7 Q ss_pred ccCCCc-eeecCCCccCCCCCC-CcceEEeeCCCCccccccccccccccCCCCceeecccCC Q FBpp0308937 850 FSQAPR-IYSFSGKNVMTDSTW-PMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLD 909 (973) Q Consensus 850 ~~~~~~-i~~f~~~~~~~~~~~-~~k~vw~Gs~~~g~~~~~~~C~~W~s~~~~~~g~as~~~ 909 (973) |+++.. ||+|+ |++++- ..+.||||++.+++... .+|++|+++...++|.....+ T Consensus 77 ~tTn~~glf~f~----l~~~i~~~~~~~WTGl~~~Wt~~~-~~C~~Wt~~s~~~~G~~G~~n 133 (135) T PF07588_consen 77 FTTNSNGLFDFP----LSNPISGTSGTIWTGLNSDWTTAT-NNCNNWTSGSSGVTGAYGSSN 133 (135) T ss_pred EecCCCceEccc----ccceecCCCccEEEeECCCCeeCC-CcccCCcCCCCcccccccccc Confidence 777766 99997 444443 48999999999987774 899999999988777766544No 3>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3SH4_A 3SH5_A 2C5D_A 4RA0_A 1H30_A .... Probab=98.47 E-value=9.5e-07 Score=81.42 Aligned_cols=114 Identities=14% Similarity=0.205 Sum_probs=83.7 Q ss_pred CCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccccceeeeeeecccCCCceEEEEEEEecCeEEEEEccc Q FBpp0308937 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (973) Q Consensus 98 ~~~~g~LfsI~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~ 177 (973) ....+.||.+.+. +...+|.|.|... .+.|.|..... ......+...+.|++||+|.|..+.+.++|+|||. T Consensus 4 ~~~~glLl~~~~~-~~~~~~~l~l~~g-----~l~~~~~~~~~--~~~~~~~~~~~~dg~wh~v~v~~~~~~~~l~vd~~ 75 (127) T PF02210_consen 4 RQPNGLLLYIGSQ-NSSDFLALELRNG-----RLVFRYNLGGE--EEISLFSPRNVNDGEWHSVSVRRSGNNVTLSVDDN 75 (127) T ss_dssp SSSSEEEEEEEES-TTSEEEEEEEETT-----EEEEEEESSSS--EEEEEESSSCCTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCEEEEEEcCC-CCCeEEEEEEECC-----EEEEEEEeecc--ceeeccccccccchheeeeeeeeeeeeeeeccCCc Confidence 5567899999887 4468888888754 27788875521 12344446778899999999999999999999999 Q ss_pred cceeeeeecCCcccccCCCceEEEeeccccc-------CCccccceEeEEE Q FBpp0308937 178 LRNTTLVTREPIELVFDSASTLYIGQAGSII-------GGKFEGYLEKINV 221 (973) Q Consensus 178 ~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~-------~~~F~G~LQ~Lri 221 (973) .............+ +....+|||...... ...|+|-|++|+| T Consensus 76 ~~~~~~~~~~~~~~--~~~~~l~iGg~~~~~~~~~~~~~~~F~GCi~~l~i 124 (127) T PF02210_consen 76 RVMSSPSSSSSQQL--NFDGSLYIGGIPNDFSSPGSDTQPGFVGCIRDLKI 124 (127) T ss_dssp EEEEEESSSTTHCB--ESEEEEEESSTTTTCTTTTSSTTSB-EEEEEEEEE T ss_pred ceeeeccCCCcccc--ccCCcEEECcccCccccccccCCCCCEEEECeEEE Confidence 98887666544333 334669999874321 4679999999987No 4>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 1N1Y_A 1MZ6_A 1MZ5_A 2A75_A 1N1S_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A 2AGS_A .... Probab=98.36 E-value=2.6e-06 Score=80.04 Aligned_cols=130 Identities=17% Similarity=0.311 Sum_probs=80.7 Q ss_pred cceEEEEEeeccCCCCc--eEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccccceeeeeeecccCCCceEEEEE Q FBpp0308937 86 YEFAILITFRQSSLKGG--YLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIAL 163 (973) Q Consensus 86 ~eFSllaT~R~~~~~~g--~LfsI~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaL 163 (973) .+|+|.+++|+...... .+|. ...++ ..+.|.+... + .+.|.+....... ..+.....+..++||+|++ T Consensus 17 ~~~Ti~~w~k~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~--~--~~~~~~~~~~~~~--~~~~~~~~~~~~~W~~va~ 87 (152) T PF13385_consen 17 DDFTISFWVKPDSPSSSDQFIFS--SSNDN-SGFSLFIDSS--G--SLQFRVSNGNGTW--YSVTSDTPLSPGQWHHVAI 87 (152) T ss_dssp SSEEEEEEEEESS-SSSEEEEEE--SCCTS-EEEEEEEETT--S--CEEEEECCSECCS--CEEE-CS---TT-EEEEEE T ss_pred CCEEEEEEEEECCCCCcceEEEE--eCCCC-CEEEEEEeCC--C--EEEEEEECCCCce--EEEEecccccCCcEEEEEE Confidence 39999999999766653 3443 32233 5666666432 2 3667666543212 2334456667899999999 Q ss_pred EEecCeEEEEEccccceeeeeecCCcccccCCCceEEEeecccccCCccccceEeEEEecCCccc Q FBpp0308937 164 QVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAI 228 (973) Q Consensus 164 sV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~~~~F~G~LQ~Lri~~dP~~~ 228 (973) .+.+..++||||.+++.+....... .......++||... .....|.|.|.+|+|+..+... T Consensus 88 ~~~~~~~~~yvnG~~~~~~~~~~~~---~~~~~~~~~iG~~~-~~~~~f~G~i~~v~i~~~alt~ 148 (152) T PF13385_consen 88 TYDGGTVRLYVNGKLVGSSTNTGNF---SSSSSSPLTIGASS-WGSRYFKGYIDEVRIYDRALTP 148 (152) T ss_dssp EEETTEEEEEETTEEEEEETCES-S---STCCCCEEEESS-T-TTT---EEEEEEEEEESS---H T ss_pred EEccceeeeEEcceEEEEEEeeecc---cCCCceeEEEeecC-CCCCceEEEEEEEEEECCcCCh Confidence 9999999999999998887554431 11245789999885 3356899999999999876543No 5>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR001791 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The Laminin G or LNS domain (for Laminin-alpha, Neurexin and Sex hormone-binding globulin) is an around 180 amino acid long domain found in a large and diverse set of extracellular proteins [, ]. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. Proteins with laminin-G domains include: Laminin. Merosin. Agrin. Neurexins. Vitamin K dependent protein S. Sex steroid binding protein SBP/SHBG. Drosophila proteins Slit, Crumbs, Fat. several proteoglycan precursors. ; PDB: 2C5D_A 4RA0_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A 1F5F_A .... Probab=97.46 E-value=0.00093 Score=61.97 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=74.6 Q ss_pred CCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccccceeeeeeecccCCCceEEEEEEEecCeEEEEEccc Q FBpp0308937 98 SLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCE 177 (973) Q Consensus 98 ~~~~g~LfsI~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~ 177 (973) ....+.||-.-+. +...+|.|.|..- .+.|.|.-..+ ...+.....+.|++||+|.+......++|.||.+ T Consensus 4 ~~~~GlLly~~~~-~~~df~~l~L~~G-----~l~~~~~~G~g---~~~~~~~~~i~dg~wh~i~~~r~~~~~~l~Vd~~ 74 (131) T PF00054_consen 4 TSPNGLLLYLGSK-DESDFLALELVNG-----RLEFRYNLGGG---PVTLQSPQKINDGKWHTIEVERNGRNGSLQVDGE 74 (131) T ss_dssp SSSSEEEEEEESS-TTSSEEEEEEETT-----EEEEEEESSSE---EEEEEECSETTSSSEEEEEEEEETTEEEEEETTS T ss_pred CCCCceEEECCcC-CCCCEEEEEeeCC-----EEEEEEecCCc---ceeeccCccccCCCeEEEEeeccceeEEEEEcCc Confidence 3456777755444 3457888887644 28888865443 2344445558899999999999999999999988 Q ss_pred cceeeeeecCC-cccccCCCceEEEeecc-c-------ccCCccccceEeEEEe Q FBpp0308937 178 LRNTTLVTREP-IELVFDSASTLYIGQAG-S-------IIGGKFEGYLEKINVY 222 (973) Q Consensus 178 ~~~t~~l~r~~-~~l~~~~~~~l~IGq~g-~-------~~~~~F~G~LQ~Lri~ 222 (973) ...+...+... ..+.+ ...||||--. . .....|.|=|++|+|- T Consensus 75 ~~~~~~~~~~~~~~l~~--~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in 126 (131) T PF00054_consen 75 EPVTGSSPSGATSQLDF--SDPLYVGGLPSSSSPPRIFVSSPGFKGCIRDLKIN 126 (131) T ss_dssp EEEEEEECSSSSSTEEE--CSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEET T ss_pred cceeEEeeccccccccc--CCcEEEeCCCchhccccccCcCCCeeEEEEEeEEC Confidence 87433332211 12333 3449999764 1 1124689999999884No 6>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 4AVV_C 4AYU_A 4AVT_J 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B .... Probab=97.33 E-value=0.0018 Score=64.69 Aligned_cols=128 Identities=19% Similarity=0.254 Sum_probs=81.1 Q ss_pred ccceEEEEEeeccCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccccceeeeeeecccCCCceEEEEEE Q FBpp0308937 85 LYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQ 164 (973) Q Consensus 85 ~~eFSllaT~R~~~~~~g~LfsI~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLs 164 (973) |.+|+|-+.+|....+.++|||..... ....|-+..+.. + .+.|+.. + +...|.+...+.+||++.+. T Consensus 24 L~~fTvC~w~~~~~~~~~tifSYa~~~-~~nell~~~~~~--~--~~~l~i~--g-----~~~~~~~~~~~~~WhhvC~t 91 (194) T PF00354_consen 24 LSAFTVCFWVRTDLSNSGTIFSYATSS-NDNELLLFISSN--G--GFELYIN--G-----SSISFSVSPSDLQWHHVCVT 91 (194) T ss_dssp BSEEEEEEEEEESGSS-EEEEEEEETT-EEEEEEEEEETT--T--EEEEEET--T-----EEEEEEECCECSSEEEEEEE T ss_pred cccEEEEEEEEEcCCCceEEEEeecCC-CCcceEEEEeCC--C--eEEEEEC--C-----cEEEEecccCCCCCEEEEEE Confidence 559999999999888889999997763 222332322221 1 2444332 1 23345555567799999998 Q ss_pred Eec--CeEEEEEccccceeeeeecCCcccccCCCceEEEeeccc------ccCCccccceEeEEEecCCcc Q FBpp0308937 165 VLS--DKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGS------IIGGKFEGYLEKINVYGNPDA 227 (973) Q Consensus 165 V~g--~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~------~~~~~F~G~LQ~Lri~~dP~~ 227 (973) -+. ..+.||+|-+...+..+.+. ..+...+.|.|||.-. ...+.|.|+|.+|+|-..... T Consensus 92 W~s~~G~~~ly~dG~~~~~~~~~~g---~~i~~gG~~vlGQeQd~~gGgf~~~qsf~G~is~~~iWd~vLs 159 (194) T PF00354_consen 92 WDSSTGSWQLYVDGERVSSGGLAKG---YSIPPGGTLVLGQEQDSYGGGFDSSQSFVGEISDVNIWDRVLS 159 (194) T ss_dssp EETTTTEEEEEETTEEEEEEESSTT-----B-SSEEEEESS-BSBTTBTCSGGGB--EEEEEEEEESS--- T ss_pred cccCCccEEEEeCCEeeeeeeccCC---ceECCCCEEEEEEcccCCCCccCcccccceEEeeEEEEeeeCC Confidence 765 78999999998766555432 2245678999999621 123579999999999876643No 7>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 4FQ4_A 4FPJ_A 4FPO_B 4FOW_A 2VW2_A 4FPL_A 4FPE_A 4FPC_A 2VW0_A 4FOY_A .... Probab=97.23 E-value=0.002 Score=63.79 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=85.0 Q ss_pred ccceEEEEEeeccCCC-CceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEecccccceeeeee-e--cccCCCceE- Q FBpp0308937 85 LYEFAILITFRQSSLK-GGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASF-G--VAHVPDKWN- 159 (973) Q Consensus 85 ~~eFSllaT~R~~~~~-~g~LfsI~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~q~~~sF-~--v~l~dg~WH- 159 (973) |.+++|++.||+...+ -..||+|.+......+|-|-+... .+-+..++..+.. ....+ . +.+..++|+ T Consensus 30 L~~gTI~v~Fk~t~~~~~qsLfsiSns~~~n~yF~lyi~~~-----~lG~E~R~~~~~~--~y~~~~~~~a~v~~~~~~~ 102 (189) T PF02973_consen 30 LEEGTIVVEFKPTSKSGIQSLFSISNSKKGNEYFHLYIRNN-----TLGFELRDQSGNQ--FYLSSRPAPASVWGGYWNS 102 (189) T ss_dssp -SSEEEEEEEEESSSSSEEEEEEEE-SSTTTEEEEEEEETT-----EEEEEEEETTTTB--CEEEEET-SSB--TECTCE T ss_pred ccceEEEEEEecCCCCceeEEEEecCCCCCCceEEEEEECC-----EEEEEEccCCCCc--cccccccchhhccccccCC Confidence 5699999999995444 445999998877789999999764 3778888776543 33333 2 445568896 Q ss_pred ----EEEEEEe--cCeEEEEEcc-ccceeeeeecCCcccccCCCceEEEeeccccc--CCccccceEeEEEecCCccc Q FBpp0308937 160 ----SIALQVL--SDKVSFYYDC-ELRNTTLVTREPIELVFDSASTLYIGQAGSII--GGKFEGYLEKINVYGNPDAI 228 (973) Q Consensus 160 ----rlaLsV~--g~~VtLyVDC-~~~~t~~l~r~~~~l~~~~~~~l~IGq~g~~~--~~~F~G~LQ~Lri~~dP~~~ 228 (973) .++|.+. ...++||+|- -.+.+....++..++ +.--.++||...+.. .-.|.|.|++|+||-.+... T Consensus 103 ~~~ntva~~ad~~~~~yklY~NG~l~~~s~~~~~Fi~di--~~~n~~~lG~t~R~~~~~y~F~G~I~n~~iYn~aLsd 178 (189) T PF02973_consen 103 VTFNTVAFVADSPNKGYKLYVNGVLSVFSKKSGKFISDI--PGLNSVQLGGTKRAGSNAYGFNGTIDNLKIYNRALSD 178 (189) T ss_dssp EEEEEEEEEEETTTTEEEEEETTEEEEEEESTSS-GGGS--TT--EEEESSEEETTEEES--EEEEEEEEEESS---H T ss_pred ceEEEEEEeecCCCceEEEEEccEEEEEecchhhHhhcC--CCCceEEEeeeEeCCCcccCcccEEEEEEEECCcCCH Confidence 6667665 4799999999 212222333444443 334568888763322 24699999999999887543No 8>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domain and two receptor binding domains []. This domain is the N-terminal receptor binding domain, which is comprised of two seven-stranded beta-sheets sandwiched together to form a jelly role motif []. The role of this domain in receptor binding appears to be indirect. ; GO: 0004222 metalloendopeptidase activity, 0050827 toxin receptor binding, 0009405 pathogenesis, 0051609 inhibition of neurotransmitter uptake, 0005576 extracellular region; PDB: 3RSJ_B 3FUQ_A 1DFQ_A 1A8D_A 1FV3_A 1YXW_A 1DLL_A 1D0H_A 1YYN_A 1FV2_A .... Probab=91.13 E-value=1.2 Score=43.02 Aligned_cols=115 Identities=13% Similarity=0.223 Sum_probs=67.7 Q ss_pred CcceEecCCcc---cCCcchhccccccc-ceEEEEEeeccCCC-------CceEEEEEcCCCCeEEEEEEEcccccCcee Q FBpp0308937 62 FPAFRFLQTAD---VKSPYRMLLPEKLY-EFAILITFRQSSLK-------GGYLFSVVNPLDTVVQLGVHLSPVVKNSYN 130 (973) Q Consensus 62 ~pAy~f~~~a~---l~~pt~~lfp~~~~-eFSllaT~R~~~~~-------~g~LfsI~~~~~~~~qlgl~lsg~~~~~~~ 130 (973) .-||.+..... ...-+..+|-..|+ .|||.+++|..+.. .-+|+.-... ..=..|.+..- . T Consensus 27 ~n~~~L~~s~~s~v~v~~~n~i~yn~~~nnFSIsFWlRi~k~~~~~~~~neytII~~~~n---nsGWkI~l~~n-----~ 98 (195) T PF07953_consen 27 NNQFKLYSSNQSEVIVIQNNNIFYNSMYNNFSISFWLRIPKYDNNINLHNEYTIINCMKN---NSGWKISLRNN-----N 98 (195) T ss_dssp TTEEEEESSTTCEEEEEEETTGSCSCSSSEEEEEEEEEEECHHSCHHTTSEEEEEEEEET---TEEEEEEEETT-----E T ss_pred cceEEEccCCcccEEEEecceEEEeccccceeEEEEEEcCCcccccccccceEEEEeccC---CCceEEEEeCC-----e Confidence 44777765544 22245566666776 99999999964221 2345544321 22223333322 2 Q ss_pred EEEEEEecccccceeeeeeeccc----C--CCceEEEEEEEec-CeEEEEEccccceeeeeec Q FBpp0308937 131 VSLVYTQADQNIGRKLASFGVAH----V--PDKWNSIALQVLS-DKVSFYYDCELRNTTLVTR 186 (973) Q Consensus 131 i~L~Y~~~~~~~~q~~~sF~v~l----~--dg~WHrlaLsV~g-~~VtLyVDC~~~~t~~l~r 186 (973) +.+...+..+. .+.+.|++.. . ..+||.+++++.. ....||+|-+++......- T Consensus 99 lI~tl~D~ng~--~k~i~f~y~~~~~~sdyiNkW~fItIt~~rL~~~~IYING~L~~~~~I~~ 159 (195) T PF07953_consen 99 LIWTLQDSNGN--EKNIYFRYSESISISDYINKWHFITITNNRLGNSKIYINGKLIDNESIKN 159 (195) T ss_dssp EEEEEEETTSE--EEEEEEESSSTSSTTSSTTSEEEEEEEEETTSEEEEEETTEEEEEEE-TT T ss_pred EEEEEEccCCc--eEEEEEEeeccCChhHhccceEEEEEEeccCCcceEEECCEEEeccchhh Confidence 44555444332 2455554222 1 2799999999999 7779999999998765543No 9>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 4JQT_A 3OSD_A 4QHZ_B 3HBK_A 3H3L_A 3NMB_A 3S5Q_A 4HXC_A 3U1X_A .... Probab=88.54 E-value=0.15 Score=48.84 Aligned_cols=97 Identities=20% Similarity=0.314 Sum_probs=55.2 Q ss_pred ccceEEEEEeec-cCCCCceEEEEEc---CCCCeEEEEEEEcccccCceeEEEEEEecccccc-----eeeeeeecccCC Q FBpp0308937 85 LYEFAILITFRQ-SSLKGGYLFSVVN---PLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIG-----RKLASFGVAHVP 155 (973) Q Consensus 85 ~~eFSllaT~R~-~~~~~g~LfsI~~---~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~-----q~~~sF~v~l~d 155 (973) |.+|.|-+.+|. ...+.+.+|...+ ..+....+.+.+...... ...... .+... ....+..+.+.. T Consensus 52 ~~df~l~~d~k~~~~~~~gi~~r~~~~~~~~~~~~gy~~~i~~~~~~----~~~~~~-~G~~~~~~~~~~~~~~~~~~~~ 126 (185) T PF06439_consen 52 FSDFTLEVDFKITPGGNSGILFRAQDNGENQDPNNGYEVQIDNSGRG----SKLNRS-TGSIYGEIEKNVEASVNVAFKP 126 (185) T ss_dssp BSSEEEEEEEEEGTTSEEEEEEEESTECESSGGGTSEEEEEE-TTTC----STTTTS-TTSBTTTBETTB-SSSCGS--T T ss_pred CCCEEEEEEEEEcCCCcceEEEEeccccCCCccceEEEEEEeCccCc----cccCcc-cceEeeeeecccccccccccCC Confidence 349999999995 5566677776661 112233333444332111 000000 11110 112233456667 Q ss_pred CceEEEEEEEecCeEEEEEccccceeeeeec Q FBpp0308937 156 DKWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (973) Q Consensus 156 g~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r 186 (973) ++||+|.|.|+++++++|||-.++.+...++ T Consensus 127 ~~W~~~~I~~~g~~i~v~vNG~~v~~~~d~~ 157 (185) T PF06439_consen 127 GQWNTVRIEVKGNRITVYVNGKLVLEFTDPD 157 (185) T ss_dssp TSEEEEEEEEETTEEEEEETTEEEEEEETTS T ss_pred CceEEEEEEEECCEEEEEECCEEEEEEEcCC Confidence 9999999999999999999999987765554No 10>PF16346 DUF4975: Domain of unknown function (DUF4975) Probab=71.76 E-value=22 Score=33.84 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=71.1 Q ss_pred ceEecCCcccCCcchhcccccccceEEEEEeeccCCCCceEEEEEcCCCCeEEEEEEEcccccCceeEEEEEEeccccc- Q FBpp0308937 64 AFRFLQTADVKSPYRMLLPEKLYEFAILITFRQSSLKGGYLFSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNI- 142 (973) Q Consensus 64 Ay~f~~~a~l~~pt~~lfp~~~~eFSllaT~R~~~~~~g~LfsI~~~~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~- 142 (973) .|.|... +..+|++.-..+-|.+|++.......+=|++....+......|+++....++..+.|.=....... T Consensus 37 ~~~l~~~------~~v~f~~L~~~~kIs~ti~~~~~~~~FGi~f~~~~d~~~~Y~i~~np~~~~~~~~~f~~~~~~~~~~ 110 (176) T PF16346_consen 37 GYTLSGN------AYVLFNRLPGTNKISATIKFSEGTDKFGISFRRDSDSEEGYYIRFNPENNNRNRLNFENEGNIGKGF 110 (176) T ss_pred eEEEecc------eEEEeccCCCceEEEEEEEeCCCCCeEEEEEEECCCccccEEEEEeeccccceEEEEEecCcccccc Confidence 6777652 334555433378888999887776666556655557788888999876432333444222221111 Q ss_pred ceeeeeeecccCCCceEEEEEEEecCeEEEEEccccceee Q FBpp0308937 143 GRKLASFGVAHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (973) Q Consensus 143 ~q~~~sF~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (973) .+......+.+..++=.+|.|.++++-+.|||+-+-..+. T Consensus 111 ~~~~~~~~~~~~a~~~y~v~I~~d~SV~v~YVNd~vAlTt 150 (176) T PF16346_consen 111 IQGIDEYPFELPADNEYHVKIVIDNSVCVVYVNDEVALTT 150 (176) T ss_pred cccccceeeecCCCCEEEEEEEEcCCEEEEEECCeEEEEE Confidence 1111233455567888999999999999999988776553No 11>PF14099 Polysacc_lyase: Polysaccharide lyase; InterPro: IPR025975 This family includes heparin lyase I (4.2.2.7 from EC). Heparin lyase I depolymerises heparin by cleaving the glycosidic linkage next to an iduronic acid moiety [, ]. The structure of heparin lyase I consists of a beta-jelly roll domain with a long, deep substrate-binding groove and an unusual thumb domain containing many basic residues extending from the main body of the enzyme []. This family also includes glucuronan lyase, (4.2.2.14 from EC) []. The structure glucuronan lyase is a beta-jelly roll [].; PDB: 2ZZJ_A 3IKW_A 3ILR_A 3INA_A 3IMN_A 3IN9_A. Probab=70.06 E-value=8.3 Score=37.15 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=44.4 Q ss_pred CceEEEEEcCCCC----eEEEEEEEcccccCceeEEEEEEeccccc--ceeeeee-ecccCCCceEEEEEEEec-----C Q FBpp0308937 101 GGYLFSVVNPLDT----VVQLGVHLSPVVKNSYNVSLVYTQADQNI--GRKLASF-GVAHVPDKWNSIALQVLS-----D 168 (973) Q Consensus 101 ~g~LfsI~~~~~~----~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~--~q~~~sF-~v~l~dg~WHrlaLsV~g-----~ 168 (973) ...|+++....+. ..-|.|.+.. +.+.+.+.+....... ......+ ..++.-|+||+|.|.|.= . T Consensus 84 ~~~i~Q~~~~~~~~~~~~P~~~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~W~~~~~~i~~s~~~~G 160 (212) T PF14099_consen 84 WFIIFQWHGSPDGEQSGSPPLALRISG---GRLYLRVRNDDNTSNPNTSNIARYIPSAPIPRGKWHDFVVHIKWSPDGDG 160 (212) T ss_dssp EEEEEEEEEE-TTSSSEEECEEEEEET---TEEEEEEEEE--ETTCEEEEEEEEEECCCS-TTSEEEEEEEEEE-CCTCE T ss_pred eeEEEEEEeCCCCCCCCCCeEEEEEEC---CEEEEEEEcCCCCcccccceeeEeeccCccCCCCEEEEEEEEEECCCCCE Confidence 4567777655444 6778888853 3334444443331011 0111122 456668999999999932 5 Q ss_pred eEEEEEcccccee Q FBpp0308937 169 KVSFYYDCELRNT 181 (973) Q Consensus 169 ~VtLyVDC~~~~t 181 (973) .|.|++|-+++-. T Consensus 161 ~i~vw~nG~~v~~ 173 (212) T PF14099_consen 161 YIEVWVNGKLVVD 173 (212) T ss_dssp EEEEEECCEEEEE T ss_pred EEEEEECCEEEEE Confidence 7999999977543No 12>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 4CCC_A 3ZR6_A 4CCE_A 4CCD_A 3ZR5_A. Probab=60.85 E-value=48 Score=37.51 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=31.8 Q ss_pred ecccCCCceEEEEEEEecCeEEEEEccccceeeeeecCCcccccCCCceEEEeec Q FBpp0308937 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTREPIELVFDSASTLYIGQA 204 (973) Q Consensus 150 ~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r~~~~l~~~~~~~l~IGq~ 204 (973) .+.+..++||+|+|.|+++.++-|||-..+.+..... +...+.+-||.. T Consensus 605 ~~~~~~~~WhtLtL~~~g~~~~g~lng~~l~~~~~~~------~p~~G~aaiGT~ 653 (669) T PF02057_consen 605 KAGVGAGRWHTLTLTVKGSSITGSLNGTVLWTNVPVS------FPKNGWAAIGTS 653 (669) T ss_dssp E-S--SS-EEEEEEEEETTEEEEEETTEEEEEEEE--------SS---EEEEEES T ss_pred EeccCCCceEEEEEEEEccEEEEEECCEEEEEecccC------CCCCceEEEEcC Confidence 4566679999999999999999999998776433211 234577778875No 13>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases (3.2.1. from EC) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3ILN_A 1UMZ_A 1UN1_B 3HR9_A 1MVE_A 3H0O_A 1ZM1_A 3AXD_B 2R49_A 3AXE_A .... Probab=54.37 E-value=54 Score=29.92 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.5 Q ss_pred ccCCCceEEEEEEEecCeEEEEEccccceee Q FBpp0308937 152 AHVPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (973) Q Consensus 152 ~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (973) ...+..||.+.|....++|.+|||-+++.+. T Consensus 106 ~~~~~~~H~y~v~W~~~~i~fyvDg~~~~~~ 136 (177) T PF00722_consen 106 FDDSNDFHTYGVEWTPDSIRFYVDGKLVRTV 136 (177) T ss_dssp STTTTSEEEEEEEEETTEEEEEETTEEEEEE T ss_pred ccccccceEEEEEEeeeeeeeccCCeeEEee Confidence 4457899999999999999999999888775No 14>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L7Q_A 4LBA_A 2L3B_A. Probab=47.99 E-value=33 Score=31.07 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=25.1 Q ss_pred eEEEEEEecccccceeeeeeecccCCCceEEEEEEEec Q FBpp0308937 130 NVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLS 167 (973) Q Consensus 130 ~i~L~Y~~~~~~~~q~~~sF~v~l~dg~WHrlaLsV~g 167 (973) ..+|+|++.... +|.+.|-+....|+...+.+++.+ T Consensus 97 ~FrLyYtS~s~~--~q~i~v~veDnfGq~~~l~f~Fn~ 132 (133) T PF12988_consen 97 VFRLYYTSTSAD--QQSIDVYVEDNFGQEQQLTFSFNN 132 (133) T ss_dssp EEEEEEEESSSS---EEEEEEEEETTSEEEEEEEEES- T ss_pred eEEEEEecCCCC--CceEEEEEEeCCCcEEEEEEEecC Confidence 478999987643 366666666667888888888764No 15>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0030246 carbohydrate binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 2YMZ_A 4LBQ_D 4NO4_A 4GA9_A 3M2M_F .... Probab=40.51 E-value=1.2e+02 Score=26.08 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=61.9 Q ss_pred hccccccc-ceEEEEEeeccCCCCceEEEEEcC--CCCeEEEEEEEcccccCceeEEEEEEecccccceeeee--eeccc Q FBpp0308937 79 MLLPEKLY-EFAILITFRQSSLKGGYLFSVVNP--LDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLAS--FGVAH 153 (973) Q Consensus 79 ~lfp~~~~-eFSllaT~R~~~~~~g~LfsI~~~--~~~~~qlgl~lsg~~~~~~~i~L~Y~~~~~~~~q~~~s--F~v~l 153 (973) ..|+..|. .=+|.++-+.......+-+.+... ......+.|.++.+-.. ..|.+-+...+. +.+... -..++ T Consensus 4 ~~l~~~l~~G~~i~I~G~~~~~~~~F~i~l~~~~~~~~~~~i~lh~~~r~~~-~~iv~Ns~~~g~--W~~ee~~~~~~pf 80 (134) T PF00337_consen 4 GPLPGGLEPGDSIIIRGTVPPDAERFSINLQTGPSNEPQDDIALHFNPRFDE-NVIVRNSRINGK--WGQEERSEGPFPF 80 (134) T ss_dssp EEETTEEETTEEEEEEEEEBTTSSBEEEEEEECTTTTTTTEEEEEEEEETTT-TEEEEEEEETTE--E-SEEEEESSTSS T ss_pred EECCCCCCCCCEEEEEEEECCCCCEEEEEeCCCcCCCCCcEEEEEEEEEeCc-hhhhhhheeecc--cccccccceeeee Confidence 34566774 666666666666666777777665 11223334444433221 245555554442 222333 35677 Q ss_pred CCCceEEEEEEEecCeEEEEEccccceee Q FBpp0308937 154 VPDKWNSIALQVLSDKVSFYYDCELRNTT 182 (973) Q Consensus 154 ~dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (973) ..++=-.|.|.+..+.+.+|||-..+... T Consensus 81 ~~g~~F~l~I~~~~~~f~I~vng~~~~~f 109 (134) T PF00337_consen 81 RPGQPFELRIVVTEDGFEIYVNGKHFCEF 109 (134) T ss_dssp TTTSEEEEEEEEESSEEEEEETTEEEEEE T ss_pred cCCCcEEEEEEEecceEEEEECCeEEEEe Confidence 78999999999999999999998776543No 16>PF08787 Alginate_lyase2: Alginate lyase; InterPro: IPR014895 Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This region forms an all beta fold, which is different to the all alpha fold of IPR008397 from INTERPRO. ; PDB: 1UAI_A 1VAV_B 3ZPY_B 4BE3_B 4Q8L_B 4Q8K_A 1J1T_A 2Z42_A 2ZAC_A 2ZAB_A .... Probab=40.48 E-value=1.1e+02 Score=29.66 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=54.4 Q ss_pred EEEEEeecc--CCC------CceEEEEEcCC--CCeEEEEEEEccc---ccCceeEEEEEEecc-cccceeeeeeecccC Q FBpp0308937 89 AILITFRQS--SLK------GGYLFSVVNPL--DTVVQLGVHLSPV---VKNSYNVSLVYTQAD-QNIGRKLASFGVAHV 154 (973) Q Consensus 89 SllaT~R~~--~~~------~g~LfsI~~~~--~~~~qlgl~lsg~---~~~~~~i~L~Y~~~~-~~~~q~~~sF~v~l~ 154 (973) .|.++++.. +.. +-++-+|.... .....|.|..... .++ .|.+.+.... .........+. .+. T Consensus 86 ~l~a~l~V~~~~~~~~~~~~~viigQIH~~~~~~~~pllkl~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~~~~~-~i~ 162 (236) T PF08787_consen 86 TLEATLAVTQVPSGGKSNNPRVIIGQIHGKDGGSNPPLLKLYYRKEPGNEKG--SVYAYVKDNNPDGGDISSNVYG-GIP 162 (236) T ss_dssp EEEEEEEEEE-TTTSCTTTCEEEEEEEEESSSTSCEEEEEEEEEESTTTESS--EEEEEEESSTCTTSEEEEEEEE-EEE T ss_pred EEEEEEEEEecCCCCCceeeeEEEEEEecCCCCCCccEEEEEEEEeeccCCC--eEEEEEeccCCCCCceEEEeEc-Ccc Confidence 677888863 222 23466776653 3577777776321 122 3666666221 11111222221 234 Q ss_pred CCceEEEEEEEecCeEEEEEccccceee Q FBpp0308937 155 PDKWNSIALQVLSDKVSFYYDCELRNTT 182 (973) Q Consensus 155 dg~WHrlaLsV~g~~VtLyVDC~~~~t~ 182 (973) .|+|-++.|.|....|+++|+++..... T Consensus 163 LG~~F~y~I~v~~~~l~V~~ng~~~~~~ 190 (236) T PF08787_consen 163 LGEKFSYEIRVSNGTLTVYVNGEGKSTT 190 (236) T ss_dssp TT-EEEEEEEEETTEEEEEETTEEEEEE T ss_pred CCCEEEEEEEEeCCEEEEEEECCCceEE Confidence 5799999999999999999999987654No 17>PF16323 DUF4959: Domain of unknown function (DUF4959) Probab=39.07 E-value=1.9e+02 Score=27.92 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=7.5 Q ss_pred CCCceEEEEEEEec Q FBpp0308937 154 VPDKWNSIALQVLS 167 (973) Q Consensus 154 ~dg~WHrlaLsV~g 167 (973) ++..=++|++.|+. T Consensus 188 ~~~~~~~f~v~v~D 201 (225) T PF16323_consen 188 LDAEPTKFGVYVRD 201 (225) T ss_pred CCCCCeEEEEEEEe Confidence 44455555555555No 18>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM. Probab=37.83 E-value=24 Score=37.90 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=33.2 Q ss_pred ecccCCCceEEEEEEEecCeEEEEEccccceeeeeec Q FBpp0308937 150 GVAHVPDKWNSIALQVLSDKVSFYYDCELRNTTLVTR 186 (973) Q Consensus 150 ~v~l~dg~WHrlaLsV~g~~VtLyVDC~~~~t~~l~r 186 (973) ..++-++.|+++.|.+.+++|.|.++-+.+..+.++- T Consensus 83 ~~~l~~~~wN~v~l~~~g~~v~~~lN~~~i~~~~~~~ 119 (411) T PF07622_consen 83 PLPLKDNAWNRVKLQRSGDTVQLHLNGQLIYERPLDP 119 (411) T ss_pred CCCCCcccccEEEEEEeCCEEEEEECCeEEEEEecCC Confidence 3677799999999999999999999999999887764No 19>PF05018 DUF667: Protein of unknown function (DUF667); InterPro: IPR007714 This family of proteins are highly conserved in eukaryotes. Some proteins in the family are annotated as transcription factors. However, there is currently no support for this in the literature. Probab=33.09 E-value=97 Score=29.11 Aligned_cols=33 Identities=24% Similarity=0.638 Sum_probs=20.7 Q ss_pred eeeecccCCCceEEEEEEEec-------------CeEEEEEccccce Q FBpp0308937 147 ASFGVAHVPDKWNSIALQVLS-------------DKVSFYYDCELRN 180 (973) Q Consensus 147 ~sF~v~l~dg~WHrlaLsV~g-------------~~VtLyVDC~~~~ 180 (973) +...+.+.++ |..|.|.+.. ++|+++-.|.... T Consensus 119 ~~iPL~l~~~-W~~l~iDL~~l~~~~f~~~~~~l~~i~i~ancrlRr 164 (185) T PF05018_consen 119 CQIPLRLPPG-WNNLCIDLQSLTSSAFGTTYRSLDSIQICANCRLRR 164 (185) T ss_pred EeecCCCCCC-eEEEEEeHHHHHHHHhhccceeEeEEEEeccEEEEE Confidence 3334444455 9999998877 4566666665543No 20>PF11267 DUF3067: Domain of unknown function (DUF3067); InterPro: IPR021420 This family of proteins has no known function. ; PDB: 2LJW_A. Probab=31.23 E-value=10 Score=32.66 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=11.4 Q ss_pred cChHHHHHHHHhhh Q FBpp0308937 959 KTADEYAAHLENLL 972 (973) Q Consensus 959 ~~~~~~~~~~~~~~ 972 (973) +||+||.+||+.+. T Consensus 42 ltE~eY~~hL~~ia 55 (98) T PF11267_consen 42 LTEEEYLEHLDAIA 55 (98) T ss_dssp S-HHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH Confidence 69999999999864