Query gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 123 No_of_seqs 2 out of 4 Neff 1.5 Searched_HMMs 13730 Date Wed May 18 18:29:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780122.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2au5a1 a.244.1.1 (A:1-132) Hy 22.9 22 0.0016 14.4 4.1 58 25-84 41-98 (132) 2 d1oi0a_ c.97.3.1 (A:) Hypothet 14.2 17 0.0012 15.1 -0.1 13 17-29 68-80 (121) 3 d1s7za_ a.159.3.1 (A:) B-form 11.3 15 0.0011 15.4 -1.1 32 67-100 65-96 (106) 4 d1yuaa2 g.41.3.3 (A:66-122) Pr 9.7 50 0.0036 12.3 1.3 16 16-31 4-19 (57) 5 d1j7qa_ a.39.1.5 (A:) Calcium 7.8 59 0.0043 11.8 1.6 49 43-94 11-60 (86) 6 d1tbua1 d.38.1.3 (A:13-116) Pe 6.5 69 0.005 11.4 1.1 24 15-38 55-78 (104) 7 d2f1fa1 d.58.18.6 (A:2-77) Ace 6.3 62 0.0045 11.7 0.4 36 21-56 35-71 (76) 8 d2oqma1 a.213.1.3 (A:1-171) Hy 5.7 76 0.0056 11.1 1.6 13 25-37 34-46 (171) 9 d1ayia_ a.28.2.1 (A:) ImmE7 pr 5.4 80 0.0058 11.0 2.6 10 104-113 42-51 (86) 10 d1jnra3 d.168.1.1 (A:257-401) 5.2 82 0.006 10.9 1.9 23 78-100 87-109 (145) No 1 >d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]} Probab=22.93 E-value=22 Score=14.38 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.8 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 876605766500036899999975889999875577888799999999999999998788 Q gi|254780122|r 25 DPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAK 84 (123) Q Consensus 25 ~P~~~~E~~i~E~~~~L~~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~~I~L~~A~~k 84 (123) +|+.--+|+ +...+|+++..-|..||-----.+..--+...+|+++++.|-|--|-++ T Consensus 41 ~P~VL~~ME--~~P~WL~Es~~~~Q~~iV~SL~~~~N~~~~~~L~~E~~~Li~LY~~~~~ 98 (132) T d2au5a1 41 SPIVLAEME--KDPNWLEEAAGGMQGVIVQSLLEDENFSSVEQLKGELARLIRLYFALAK 98 (132) T ss_dssp CHHHHHHHH--HCTTHHHHHHHHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999885--1830899998776788998875257857499999999999999999987 No 2 >d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=14.22 E-value=17 Score=15.10 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=7.8 Q ss_pred HHHHCCCCCCCCE Q ss_conf 6563799987660 Q gi|254780122|r 17 YFHSHPNADPDIS 29 (123) Q Consensus 17 ~F~S~~N~~P~~~ 29 (123) -|||||+..|.-| T Consensus 68 i~HSHP~~~a~PS 80 (121) T d1oi0a_ 68 TVHSHPSPSCRPS 80 (121) T ss_dssp EEEEESSSCCSCC T ss_pred EEEECCCCCCCCC T ss_conf 9972689999769 No 3 >d1s7za_ a.159.3.1 (A:) B-form DNA mimic Ocr {Bacteriophage T7 [TaxId: 10760]} Probab=11.30 E-value=15 Score=15.44 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999987888999999997543138 Q gi|254780122|r 67 DAMDDLKTYISLLQATAKNLKSLLKEYWEESLDG 100 (123) Q Consensus 67 D~~~~~~~~I~L~~A~~k~L~~~l~E~WE~~~D~ 100 (123) .+|.++|-.+-.+|| |--+-+++.+|..++|| T Consensus 65 GLmpdtkDV~~ILqa--RIyE~L~ndl~~d~ed~ 96 (106) T d1s7za_ 65 GLMPDTKDVIRILQA--RIYEQLTIDLWEDAEDL 96 (106) T ss_dssp GGSCCCSCHHHHHHH--HHHHHHHHHHHHTHHHH T ss_pred CCCCCCHHHHHHHHH--HHHHHHHHHCCCCHHHH T ss_conf 778881899999999--99999987431448999 No 4 >d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]} Probab=9.69 E-value=50 Score=12.26 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.6 Q ss_pred HHHHHCCCCCCCCEEE Q ss_conf 3656379998766057 Q gi|254780122|r 16 FYFHSHPNADPDISIE 31 (123) Q Consensus 16 ~~F~S~~N~~P~~~~E 31 (123) .|+++||-.||+-|-- T Consensus 4 ~yL~~AP~~D~dGn~~ 19 (57) T d1yuaa2 4 RYLADAPQQDPEGNKT 19 (57) T ss_dssp HHHHHSCSSCTTCCCE T ss_pred EHHHCCCCCCCCCCEE T ss_conf 2522398659999976 No 5 >d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Probab=7.81 E-value=59 Score=11.78 Aligned_cols=49 Identities=33% Similarity=0.495 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 999975889999875577888799999999999999998-7888999999997 Q gi|254780122|r 43 EEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQA-TAKNLKSLLKEYW 94 (123) Q Consensus 43 ~~i~~~~~~v~~~~Rs~~T~l~~~D~~~~~~~~I~L~~A-~~k~L~~~l~E~W 94 (123) ++-..|-++.|.|+|....|-..-|.||-+.. |-|. ++|.-+...+|.- T Consensus 11 eekdecmkifdifdrnaeniapvsdtmdmltk---lgqtytkreteaimkear 60 (86) T d1j7qa_ 11 EEKDECMKIFDIFDRNAENIAPVSDTMDMLTK---LGQTYTKRETEAIMKEAR 60 (86) T ss_dssp THHHHHHHHHHHHSTTTTSCBCHHHHHHHHHH---TSCCCSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHC T ss_conf 25778999999970352115771028999999---614776888999999800 No 6 >d1tbua1 d.38.1.3 (A:13-116) Peroxisomal long-chain acyl-CoA thioesterase 1, TES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=6.46 E-value=69 Score=11.38 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=18.6 Q ss_pred HHHHHHCCCCCCCCEEEEEEECHH Q ss_conf 136563799987660576650003 Q gi|254780122|r 15 NFYFHSHPNADPDISIEMQISENQ 38 (123) Q Consensus 15 N~~F~S~~N~~P~~~~E~~i~E~~ 38 (123) .-||+...+++..+-|+|+++-.- T Consensus 55 h~~Fl~pg~~~~pi~~~Ve~lrdG 78 (104) T d1tbua1 55 HSYFIKGGDPRTKITYHVQNLRNG 78 (104) T ss_dssp EEEECSCCCTTSCCEEEEEEEEEC T ss_pred EEEEECCCCCCCEEEEEEEEEECC T ss_conf 899854889983099998752279 No 7 >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Probab=6.29 E-value=62 Score=11.67 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=24.6 Q ss_pred CCCCCCCCE-EEEEEECHHHHHHHHHHHHHHHHHHHH Q ss_conf 799987660-576650003689999997588999987 Q gi|254780122|r 21 HPNADPDIS-IEMQISENQRYLDEEISQCNAVVDVFK 56 (123) Q Consensus 21 ~~N~~P~~~-~E~~i~E~~~~L~~~i~~~~~~v~~~~ 56 (123) .|..+|.+| +-+-+.....-++.-++|-+|+++|.+ T Consensus 35 ~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~ 71 (76) T d2f1fa1 35 APTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLR 71 (76) T ss_dssp EECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEE T ss_pred CCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEE T ss_conf 0457998129999997888899999999857878799 No 8 >d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562 {Shewanella denitrificans [TaxId: 192073]} Probab=5.72 E-value=76 Score=11.12 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=4.2 Q ss_pred CCCCEEEEEEECH Q ss_conf 8766057665000 Q gi|254780122|r 25 DPDISIEMQISEN 37 (123) Q Consensus 25 ~P~~~~E~~i~E~ 37 (123) +|+.-.+.+..+. T Consensus 34 ~~~~ll~~rL~~D 46 (171) T d2oqma1 34 DMDVLLNSRLAAD 46 (171) T ss_dssp CHHHHHTCCSSTT T ss_pred CHHHHHHHHHHHH T ss_conf 9999998552245 No 9 >d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]} Probab=5.41 E-value=80 Score=11.00 Aligned_cols=10 Identities=50% Similarity=0.740 Sum_probs=5.7 Q ss_pred HHHHHCCCHH Q ss_conf 3567386756 Q gi|254780122|r 104 EEIYEHPDQE 113 (123) Q Consensus 104 E~~~EHPDQE 113 (123) +.+.|||+.- T Consensus 42 ~~iteHP~gs 51 (86) T d1ayia_ 42 VKITEHPDGT 51 (86) T ss_dssp HHHHCCTTTT T ss_pred HHHHCCCCCC T ss_conf 9997089988 No 10 >d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=5.22 E-value=82 Score=10.92 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99987888999999997543138 Q gi|254780122|r 78 LLQATAKNLKSLLKEYWEESLDG 100 (123) Q Consensus 78 L~~A~~k~L~~~l~E~WE~~~D~ 100 (123) ++.+.++.+|.+-.|-||.-||- T Consensus 87 ~~~~~~k~~k~le~eawedfLdM 109 (145) T d1jnra3 87 LAGGDKKKLKHIYEEAFEDFLDM 109 (145) T ss_dssp HHTTCHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 75411667788899999998647 Done!