BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] (123 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] gi|254039799|gb|ACT56595.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62] gi|317120736|gb|ADV02558.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2] gi|317120797|gb|ADV02618.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2] Length = 123 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 123/123 (100%), Positives = 123/123 (100%) Query: 1 MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60 MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS Sbjct: 1 MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60 Query: 61 TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120 TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA Sbjct: 61 TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120 Query: 121 NQI 123 NQI Sbjct: 121 NQI 123 >gi|317120693|gb|ADV02516.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1] gi|317120837|gb|ADV02658.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1] Length = 123 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 122/123 (99%), Positives = 123/123 (100%) Query: 1 MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60 MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS Sbjct: 1 MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60 Query: 61 TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120 TILDKLDA+DDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA Sbjct: 61 TILDKLDAVDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120 Query: 121 NQI 123 NQI Sbjct: 121 NQI 123 >gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] gi|254040897|gb|ACT57693.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter asiaticus str. psy62] gi|317120684|gb|ADV02507.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1] gi|317120726|gb|ADV02548.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2] gi|317120787|gb|ADV02608.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2] gi|317120828|gb|ADV02649.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1] Length = 130 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 15/134 (11%) Query: 1 MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56 MG LK ++ +EI N+ F S N +P+ + E+++ E L+ + ++ Sbjct: 1 MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57 Query: 57 RSDSTILDKLDAMDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYEH 109 R+ T + D ++++ I L +A + L+ + E W E D E E EH Sbjct: 58 RTIRTHI-LEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEH 116 Query: 110 PDQEHREDYYANQI 123 PDQEH+EDYYA+QI Sbjct: 117 PDQEHKEDYYASQI 130 >gi|315121961|ref|YP_004062450.1| hypothetical protein CKC_01055 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122929|ref|YP_004063418.1| hypothetical protein CKC_05925 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495363|gb|ADR51962.1| hypothetical protein CKC_01055 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496331|gb|ADR52930.1| hypothetical protein CKC_05925 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 128 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 7/129 (5%) Query: 1 MGALKNHFHDEINENFYFHSHPNA------DPDISIEMQISENQRYLDEEISQCNAVVDV 54 MG LK H+ +EI N+ F+ N +P+ SI+ ++ E R LD+ C +V Sbjct: 1 MGKLKQHYMEEIEANYEFNCLNNPRFNLDPEPEPSIKEEVEELIRSLDQRFLWCCDLVRD 60 Query: 55 FKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEH 114 +RSD TILDKLDAM++++ Y+S+L+ TA L+ LLKE E + E +EE EHPDQEH Sbjct: 61 LQRSDYTILDKLDAMEEMRMYLSVLRPTANRLEDLLKES-WEEPEKEPEEEPREHPDQEH 119 Query: 115 REDYYANQI 123 + YYA+QI Sbjct: 120 ADAYYADQI 128 >gi|257468061|ref|ZP_05632157.1| LOS biosynthesis enzyme LBGB [Fusobacterium ulcerans ATCC 49185] gi|317062347|ref|ZP_07926832.1| LOS biosynthesis enzyme LBGB [Fusobacterium ulcerans ATCC 49185] gi|313688023|gb|EFS24858.1| LOS biosynthesis enzyme LBGB [Fusobacterium ulcerans ATCC 49185] Length = 362 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 8 FHDEINENF-YFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKL 66 F E+ E + ++S N + + + L+E C ++ + KR ++ Sbjct: 190 FLGEMEEKYKDYYSKENINIIFNYTGGNIKKNLSLEEVKESCKKLIKIDKRIIVYVMTLP 249 Query: 67 DAMDDLKTYISLLQATAKNLKSLLKEYWEES 97 D ++LK I+ L+ + K+ E + Sbjct: 250 DKYEELKKEINELKEERIKICEKTKDILEAA 280 >gi|327261399|ref|XP_003215518.1| PREDICTED: dystonin-like isoform 1 [Anolis carolinensis] Length = 5681 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 28 ISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAKNLK 87 I+ + + + LDE ISQ V + DSTI ++ L+ S+ A + +K Sbjct: 4129 SQIKEDVKKRAQALDEAISQSTQVTQFHDKIDSTIESLERIVERLRQPPSI-SAEVEKIK 4187 Query: 88 SLLKEYWEESLDGEDDEEIYEHPDQEHRE 116 + E S+D E + +YE Q E Sbjct: 4188 EQISENKNVSVDLEKLQPVYETLKQRGEE 4216 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.313 0.131 0.347 Lambda K H 0.267 0.0387 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 843,456,178 Number of Sequences: 13984884 Number of extensions: 19642075 Number of successful extensions: 66874 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 27 Number of HSP's that attempted gapping in prelim test: 66852 Number of HSP's gapped (non-prelim): 40 length of query: 123 length of database: 4,792,584,752 effective HSP length: 89 effective length of query: 34 effective length of database: 3,547,930,076 effective search space: 120629622584 effective search space used: 120629622584 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 75 (33.6 bits)