BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780122|ref|YP_003064535.1| hypothetical protein
CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|254780122|ref|YP_003064535.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039799|gb|ACT56595.1| hypothetical protein CLIBASIA_00005 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120736|gb|ADV02558.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2]
 gi|317120797|gb|ADV02618.1| hypothetical protein SC2_gp185 [Liberibacter phage SC2]
          Length = 123

 Score =  163 bits (412), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60
           MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS
Sbjct: 1   MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60

Query: 61  TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120
           TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA
Sbjct: 61  TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120

Query: 121 NQI 123
           NQI
Sbjct: 121 NQI 123


>gi|317120693|gb|ADV02516.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1]
 gi|317120837|gb|ADV02658.1| hypothetical protein SC1_gp185 [Liberibacter phage SC1]
          Length = 123

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/123 (99%), Positives = 123/123 (100%)

Query: 1   MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60
           MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS
Sbjct: 1   MGALKNHFHDEINENFYFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDS 60

Query: 61  TILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120
           TILDKLDA+DDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA
Sbjct: 61  TILDKLDAVDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDYYA 120

Query: 121 NQI 123
           NQI
Sbjct: 121 NQI 123


>gi|254781220|ref|YP_003065633.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040897|gb|ACT57693.1| hypothetical protein CLIBASIA_05635 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120684|gb|ADV02507.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1]
 gi|317120726|gb|ADV02548.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2]
 gi|317120787|gb|ADV02608.1| hypothetical protein SC2_gp135 [Liberibacter phage SC2]
 gi|317120828|gb|ADV02649.1| hypothetical protein SC1_gp135 [Liberibacter phage SC1]
          Length = 130

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 15/134 (11%)

Query: 1   MGALKNHFHDEINENFYFHSHPNA----DPDISIEMQISENQRYLDEEISQCNAVVDVFK 56
           MG LK ++ +EI  N+ F S  N     +P+ + E+++ E    L+  +     ++    
Sbjct: 1   MGQLKQYYLEEIEANYEFLSAVNPRMGIEPESNYEVEVIEK---LERALKTSKKLIHFRD 57

Query: 57  RSDSTILDKLDAMDDLKTYISLLQATAKNLKSLL---KEYW----EESLDGEDDEEIYEH 109
           R+  T +   D ++++   I L +A  + L+  +    E W    E   D E  E   EH
Sbjct: 58  RTIRTHI-LEDLIEEVNRIIVLAKAHKRRLELKIFEDNEVWRLLDEAREDCEGCENCSEH 116

Query: 110 PDQEHREDYYANQI 123
           PDQEH+EDYYA+QI
Sbjct: 117 PDQEHKEDYYASQI 130


>gi|315121961|ref|YP_004062450.1| hypothetical protein CKC_01055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|315122929|ref|YP_004063418.1| hypothetical protein CKC_05925 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495363|gb|ADR51962.1| hypothetical protein CKC_01055 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496331|gb|ADR52930.1| hypothetical protein CKC_05925 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 128

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 7/129 (5%)

Query: 1   MGALKNHFHDEINENFYFHSHPNA------DPDISIEMQISENQRYLDEEISQCNAVVDV 54
           MG LK H+ +EI  N+ F+   N       +P+ SI+ ++ E  R LD+    C  +V  
Sbjct: 1   MGKLKQHYMEEIEANYEFNCLNNPRFNLDPEPEPSIKEEVEELIRSLDQRFLWCCDLVRD 60

Query: 55  FKRSDSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEH 114
            +RSD TILDKLDAM++++ Y+S+L+ TA  L+ LLKE   E  + E +EE  EHPDQEH
Sbjct: 61  LQRSDYTILDKLDAMEEMRMYLSVLRPTANRLEDLLKES-WEEPEKEPEEEPREHPDQEH 119

Query: 115 REDYYANQI 123
            + YYA+QI
Sbjct: 120 ADAYYADQI 128


>gi|257468061|ref|ZP_05632157.1| LOS biosynthesis enzyme LBGB [Fusobacterium ulcerans ATCC 49185]
 gi|317062347|ref|ZP_07926832.1| LOS biosynthesis enzyme LBGB [Fusobacterium ulcerans ATCC 49185]
 gi|313688023|gb|EFS24858.1| LOS biosynthesis enzyme LBGB [Fusobacterium ulcerans ATCC 49185]
          Length = 362

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 8   FHDEINENF-YFHSHPNADPDISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKL 66
           F  E+ E +  ++S  N +   +      +    L+E    C  ++ + KR    ++   
Sbjct: 190 FLGEMEEKYKDYYSKENINIIFNYTGGNIKKNLSLEEVKESCKKLIKIDKRIIVYVMTLP 249

Query: 67  DAMDDLKTYISLLQATAKNLKSLLKEYWEES 97
           D  ++LK  I+ L+     +    K+  E +
Sbjct: 250 DKYEELKKEINELKEERIKICEKTKDILEAA 280


>gi|327261399|ref|XP_003215518.1| PREDICTED: dystonin-like isoform 1 [Anolis carolinensis]
          Length = 5681

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 28   ISIEMQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQATAKNLK 87
              I+  + +  + LDE ISQ   V     + DSTI      ++ L+   S+  A  + +K
Sbjct: 4129 SQIKEDVKKRAQALDEAISQSTQVTQFHDKIDSTIESLERIVERLRQPPSI-SAEVEKIK 4187

Query: 88   SLLKEYWEESLDGEDDEEIYEHPDQEHRE 116
              + E    S+D E  + +YE   Q   E
Sbjct: 4188 EQISENKNVSVDLEKLQPVYETLKQRGEE 4216


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.313    0.131    0.347 

Lambda     K      H
   0.267   0.0387    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 843,456,178
Number of Sequences: 13984884
Number of extensions: 19642075
Number of successful extensions: 66874
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 66852
Number of HSP's gapped (non-prelim): 40
length of query: 123
length of database: 4,792,584,752
effective HSP length: 89
effective length of query: 34
effective length of database: 3,547,930,076
effective search space: 120629622584
effective search space used: 120629622584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.6 bits)