RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780122|ref|YP_003064535.1| hypothetical protein
CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62]
(123 letters)
>gnl|CDD|180235 PRK05752, PRK05752, uroporphyrinogen-III synthase; Validated.
Length = 255
Score = 28.9 bits (65), Expect = 0.31
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 26 PDISIE-MQISENQRYLDEEISQCNAVVDVFKRSDSTILDKLDAM---DDLKTYISLLQA 81
P ++IE + + QR L E+ + AV+ V K + L+ LD + + S+ A
Sbjct: 33 PLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSVGAA 92
Query: 82 TAKNLKSL-LKEYWEESLDGEDDEEIYEHP 110
TA L+ L + E G+D E + P
Sbjct: 93 TAAILQDYGLDVSYPEQ--GDDSEALLALP 120
>gnl|CDD|149408 pfam08336, P4Ha_N, Prolyl 4-Hydroxylase alpha-subunit, N-terminal
region. The members of this family are eukaryotic
proteins, and include all three isoforms of the prolyl
4-hydroxylase alpha subunit. This enzyme (EC:1.14.11.2)
is important in the post-translational modification of
collagen, as it catalyses the formation of
4-hydroxyproline. In vertebrates, the complete enzyme is
an alpha2-beta2 tetramer; the beta-subunit is identical
to protein disulphide isomerase. The function of the
N-terminal region featured in this family does not seem
to be known.
Length = 134
Score = 28.0 bits (63), Expect = 0.68
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 69 MDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIY-EHP 110
+D+L YI L+ LK L E E + D E Y +P
Sbjct: 17 IDNLDDYIEALEEKLDTLKRFLDELKREHEKAKSDPEEYLGNP 59
>gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional.
Length = 287
Score = 27.3 bits (61), Expect = 1.1
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 10 DEINEN-FYFHSHPNADPDISIEMQISENQR 39
D I FY +SHP A + M+ QR
Sbjct: 248 DAIRAGRFYIYSHPQALASVRTRMEDIVQQR 278
>gnl|CDD|177564 PHA03237, PHA03237, envelope glycoprotein M; Provisional.
Length = 424
Score = 25.9 bits (57), Expect = 3.0
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 67 DAMDDLKTYISLLQATAKNLKSLLKEYW----EESLDGEDDEEIYEHPDQEHREDYY 119
+K Y++ ++ + KSL+++ E + +D+E IY+ E ++Y
Sbjct: 367 TVQQKVKRYLNRVRGGRRRPKSLVEDERGLLLTEDSETDDEEPIYDVVYSEFESEWY 423
>gnl|CDD|117067 pfam08490, DUF1744, Domain of unknown function (DUF1744). This
domain is found on the epsilon catalytic subunit of DNA
polymerase. It is found C terminal to pfam03104 and
pfam00136.
Length = 396
Score = 25.7 bits (57), Expect = 3.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 77 SLLQATAKNLKSLLKEYWEESLDG 100
+ A + LKS++KE+W+++L G
Sbjct: 258 AFSSAALRVLKSMVKEWWDDALSG 281
>gnl|CDD|162490 TIGR01691, enolase-ppase, 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase. This enzyme is the enolase-phosphatase of
methionine salvage, a pathway that regenerates
methionine from methylthioadenosine (MTA).
Adenosylmethionine (AdoMet) is a donor of different
moieties for various processes, including methylation
reactions. Use of AdoMet for spermidine biosynthesis,
which leads to polyamine biosynthesis, leaves MTA as a
by-product that must be cleared. In Bacillus subtilis
and related species, this single protein is replaced by
separate enzymes with enolase and phosphatase
activities.
Length = 220
Score = 25.2 bits (55), Expect = 4.5
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 83 AKNLKSLLKEYWEESLDGEDDEEIYEHPDQE 113
A L+S + + +E ++ E +
Sbjct: 27 ASRLESFVNDNYESTIVENLRELGKTPEELI 57
>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase.
Length = 536
Score = 25.1 bits (54), Expect = 5.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 41 LDEEISQCNAVVDVFKRSDSTILDKLDAMDDL 72
L EE+S+ + V + + ST LDKL M++L
Sbjct: 133 LQEELSKAHQQVHISEARVSTALDKLAHMEEL 164
>gnl|CDD|150226 pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1
(CRISPR_cse1). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This entry, represented by
CT1972 from Chlorobaculum tepidum, is found in the
CRISPR/Cas subtype Ecoli regions of many bacteria (most
of which are mesophiles), and not in Archaea. It is
designated Cse1.
Length = 475
Score = 25.0 bits (55), Expect = 5.7
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 59 DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDY 118
+ +L D +K + + A+ L+S LKE W ++ + E +
Sbjct: 374 PAALLSDEDLRAQIKEAVDAAEEAARALRSALKEAWFALGKDAKGDKSFVDLAGRAEERF 433
Query: 119 YAN 121
+
Sbjct: 434 WQR 436
>gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 24.2 bits (53), Expect = 8.4
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 70 DDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEIYEHPDQEHREDY 118
D+ K YI A LK ESLD ++ E+IY D+ +E Y
Sbjct: 47 DEFKQYIKEAVADIDAKIEELKAEAIESLDIDEREDIYAQIDKLEKEAY 95
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.313 0.132 0.377
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,054,183
Number of extensions: 115438
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 39
Length of query: 123
Length of database: 5,994,473
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,222,617
Effective search space: 173127297
Effective search space used: 173127297
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)