RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780122|ref|YP_003064535.1| hypothetical protein
CLIBASIA_00005 [Candidatus Liberibacter asiaticus str. psy62]
         (123 letters)



>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
           domain {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 388

 Score = 25.4 bits (54), Expect = 1.4
 Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 25  DPDISIEMQISE--NQRYLDEEISQCNAVVDVFKRSDSTILDKLDAMDDLKTYISLLQAT 82
           D    +E ++++   +  L E+I Q   +  +    D    + + ++      +    AT
Sbjct: 7   DATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKGAT 66

Query: 83  AKNLKSLLKEYWEESLDGEDDEEIYEHPDQEH 114
           AK  + ++  + +  +       +    D  H
Sbjct: 67  AKEWQDMVDGFQKACMSTRLGIPMIYGIDAVH 98


>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 157

 Score = 24.8 bits (53), Expect = 2.1
 Identities = 4/23 (17%), Positives = 12/23 (52%)

Query: 60 STILDKLDAMDDLKTYISLLQAT 82
          +T+L KL++   +     + + +
Sbjct: 1  TTVLGKLESDPMMSDTYKMGKFS 23


>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
           carboxykinase (ATP-oxaloacetate carboxy-lyase)
           {Trypanosoma cruzi [TaxId: 5693]}
          Length = 323

 Score = 24.9 bits (54), Expect = 2.3
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 59  DSTILDKLDAMDDLKTYISLLQATAKNLKSLLKEYWEESLDGEDDEEI 106
              +L+   A  D++ +      T+K L ++ +E +      +  +E+
Sbjct: 269 PEHLLNPRKAWKDVRQF----NETSKELVAMFQESFSARFAAKASQEM 312


>d2p5zx1 b.40.8.1 (X:378-468) Hypothetical protein c3393
           {Escherichia coli o6 [TaxId: 217992]}
          Length = 91

 Score = 24.7 bits (54), Expect = 2.3
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 100 GEDDEEIYEHPDQEHR 115
                +IY H D++ R
Sbjct: 14  STVKNDIYAHIDKDGR 29


>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
          (ACC synthase) {Tomato (Lycopersicon esculentum)
          [TaxId: 4081]}
          Length = 428

 Score = 23.1 bits (48), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 21 HPNADPDISIEMQISENQRYLDE 43
          HP  +P+  I+M ++ENQ  LD 
Sbjct: 30 HPLKNPNGVIQMGLAENQLCLDL 52


>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor
           domain {Bacillus subtilis [TaxId: 1423]}
          Length = 169

 Score = 23.4 bits (50), Expect = 6.9
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 42  DEEISQCNAVVDVFKRSDSTILDK----LDAMDDLKTYISLLQATAKNLKSLLKEYWEES 97
           D E+     +  + + +   I+D     LD    L   I+   ++   LK  LK + +E 
Sbjct: 36  DAELYVLEQLQPLIQENIVNIVDAFYKNLDHESSLMDIIND-HSSVDRLKQTLKRHIQEM 94

Query: 98  LDGEDDEEIYE 108
             G  D+E  E
Sbjct: 95  FAGVIDDEFIE 105


>d1j7qa_ a.39.1.5 (A:) Calcium vector protein {Amphioxus
          (Branchiostoma lanceolatum) [TaxId: 7740]}
          Length = 86

 Score = 22.8 bits (48), Expect = 9.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 43 EEISQCNAVVDVFKRSDSTILDKLDAMDDL 72
          EE  +C  + D+F R+   I    D MD L
Sbjct: 11 EEKDECMKIFDIFDRNAENIAPVSDTMDML 40


>d1v9ma_ f.40.1.1 (A:) V-type ATP synthase subunit C {Thermus
           thermophilus [TaxId: 274]}
          Length = 319

 Score = 22.6 bits (48), Expect = 9.8
 Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 75  YISLLQATAKNLKSLLKEY-WEESLDGEDDEEIYEHPDQEHREDYY 119
           +   L  +  +   LL E  +   L G+   ++     +   +   
Sbjct: 21  FQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVG 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 498,772
Number of extensions: 20710
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 23
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)