Query gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Sun May 22 08:41:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780123.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1n93_X P40 nucleoprotein; RNA 30.7 21 0.00062 17.1 1.2 25 15-39 77-101 (128)
2 >2k6l_A Putative uncharacteriz 20.6 37 0.0011 15.7 0.9 10 65-74 29-39 (51)
3 >3i4r_B Nuclear pore complex p 17.1 54 0.0016 14.8 1.1 20 57-76 18-37 (65)
4 >3cl6_A PUUE allantoinase; URI 16.1 9.4 0.00028 19.1 -3.0 16 63-78 3-18 (37)
5 >2gmf_A Granulocyte-macrophage 13.0 1E+02 0.003 13.2 3.1 38 17-66 54-91 (127)
6 >1izo_A P450bsbeta, cytochrome 12.3 50 0.0015 14.9 -0.1 45 18-62 18-62 (170)
7 >2bnx_A Diaphanous protein hom 11.2 1E+02 0.0031 13.1 1.2 23 29-51 45-67 (69)
8 >2o3e_A Neurolysin; thermolysi 11.0 1.2E+02 0.0034 12.8 2.1 30 47-76 11-43 (67)
9 >3fga_B Serine/threonine-prote 10.5 1.2E+02 0.0036 12.7 2.3 31 3-33 56-86 (127)
10 >2q2k_A Hypothetical protein; 9.7 62 0.0018 14.4 -0.4 30 10-39 31-60 (70)
No 1
>>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} (X:1-128)
Probab=30.75 E-value=21 Score=17.11 Aligned_cols=25 Identities=32% Similarity=0.572 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6889999999998889887664556
Q gi|254780123|r 15 IPQLLTFLSLITQGLQEALITQDVK 39 (107)
Q Consensus 15 ipqlltflslitqglqealitqdvk 39 (107)
+.--|+||.+|-.||.+||.+-.|.
T Consensus 77 VtpSLvFLcflf~GlH~all~vGVs 101 (128)
T 1n93_X 77 VTPSLVFLCLLIPGLHAAFVHGGVP 101 (128)
T ss_dssp THHHHHHHHHHSTTHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 7801765667541378777533655
No 2
>>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV} (A:)
Probab=20.62 E-value=37 Score=15.71 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=4.8
Q ss_pred CCH-HHHHHHH
Q ss_conf 112-7889998
Q gi|254780123|r 65 DKG-KSQFLSE 74 (107)
Q Consensus 65 dkg-ksqflse 74 (107)
.|| -|+|..|
T Consensus 29 rKGDLSrFiEe 39 (51)
T 2k6l_A 29 RKGDLSRFIED 39 (51)
T ss_dssp CSSCHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 64429999999
No 3
>>3i4r_B Nuclear pore complex protein NUP133; protein transport,structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens} (B:357-421)
Probab=17.07 E-value=54 Score=14.76 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=16.1
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 99899701112788999854
Q gi|254780123|r 57 ISYMKRCGDKGKSQFLSEIL 76 (107)
Q Consensus 57 isymkrcgdkgksqflseil 76 (107)
-.||.+-+++|-|+|+-.--
T Consensus 18 ~~Y~~kf~e~dFs~flf~WY 37 (65)
T 3i4r_B 18 QRYMTQFADQNFSDFLFRWY 37 (65)
T ss_dssp HHHHHHSCSSCHHHHTHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHH
T ss_conf 99999826466589999999
No 4
>>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A (A:43-79)
Probab=16.14 E-value=9.4 Score=19.12 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=13.0
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 0111278899985445
Q gi|254780123|r 63 CGDKGKSQFLSEILVP 78 (107)
Q Consensus 63 cgdkgksqflseilvp 78 (107)
-||.+..+|||||.-.
T Consensus 3 hGD~~SE~FLSEi~ga 18 (37)
T 3cl6_A 3 HGDKESEAFLSEMVSA 18 (37)
T ss_dssp GTCSBCCCSSSSCTTC
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 6776432234433456
No 5
>>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} (A:)
Probab=13.05 E-value=1e+02 Score=13.22 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999998889887664556665238434345689999989970111
Q gi|254780123|r 17 QLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDK 66 (107)
Q Consensus 17 qlltflslitqglqealitqdvkaveavdpdlkkrvtvlaisymkrcgdk 66 (107)
-|-|-|.|..|||+..|+ .||...|..|-.|-+.|--.
T Consensus 54 ClQtRL~LYkqGLrGslt------------~Lkg~LtmmA~hYk~~CPpT 91 (127)
T 2gmf_A 54 CLQTRLELYKQGLRGSLT------------KLKGPLTMMASHYKQHCPPT 91 (127)
T ss_dssp SHHHHHHHHHHTCCGGGG------------GGHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCCHH------------HHCCHHHHHHHHHHHCCCCC
T ss_conf 899999999956434078------------75048999999987049779
No 6
>>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} (A:79-134,A:247-288,A:346-417)
Probab=12.27 E-value=50 Score=14.95 Aligned_cols=45 Identities=29% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999888988766455666523843434568999998997
Q gi|254780123|r 18 LLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKR 62 (107)
Q Consensus 18 lltflslitqglqealitqdvkaveavdpdlkkrvtvlaisymkr 62 (107)
---|+||.|..-++.|..--....++.-+.-.++-.|.-|||...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (170)
T 1izo_A 18 KMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLISYFLV 62 (170)
T ss_dssp HHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHTTSSEEEHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf 999887409999999999999999999998630897868789999
No 7
>>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural protein; 2.4A {Mus musculus} (A:250-318)
Probab=11.18 E-value=1e+02 Score=13.14 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 89887664556665238434345
Q gi|254780123|r 29 LQEALITQDVKAVEAVDPDLKKR 51 (107)
Q Consensus 29 lqealitqdvkaveavdpdlkkr 51 (107)
|-+.+|.|=|---...|||++.|
T Consensus 45 LiD~~vsqIvL~~~g~DpD~~~~ 67 (69)
T 2bnx_A 45 LIEECVSQIVLHKNGTDPDFKCR 67 (69)
T ss_dssp HHHHHHHHHHTCGGGCCCCTTCS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999997341257740255
No 8
>>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel, hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P (A:157-186,A:249-285)
Probab=11.04 E-value=1.2e+02 Score=12.85 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHH---HHHHHHH
Q ss_conf 34345689999989970111278---8999854
Q gi|254780123|r 47 DLKKRVTVLAISYMKRCGDKGKS---QFLSEIL 76 (107)
Q Consensus 47 dlkkrvtvlaisymkrcgdkgks---qflseil 76 (107)
.+|||..-+.|.|-|...|.|+. ..+.+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ge~DN~~II~eIl 43 (67)
T 2o3e_A 11 SMKKRMSELCIDFNKNLNEDCKQENTAILQQLL 43 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999999999999763214210258999999
No 9
>>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; PP2A, acetylation, alternative splicing, nucleus, phosphoprotein, cytoplasm, hydrolase, iron, manganese, metal-binding; HET: 0D5; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* (B:121-247)
Probab=10.46 E-value=1.2e+02 Score=12.73 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf 5888886412036889999999998889887
Q gi|254780123|r 3 VHFIEEAVKAKDIPQLLTFLSLITQGLQEAL 33 (107)
Q Consensus 3 vhfieeavkakdipqlltflslitqglqeal 33 (107)
..||.|....-.|..||.++.-|.+|..-.|
T Consensus 56 ~~fi~e~~~~~gi~eLLeil~sii~gf~~PL 86 (127)
T 3fga_B 56 YRFIYETEHHNGIAELLEILGSIINGFALPL 86 (127)
T ss_dssp HHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9986056786348999999999986257887
No 10
>>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus} (A:)
Probab=9.71 E-value=62 Score=14.41 Aligned_cols=30 Identities=30% Similarity=0.623 Sum_probs=0.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 412036889999999998889887664556
Q gi|254780123|r 10 VKAKDIPQLLTFLSLITQGLQEALITQDVK 39 (107)
Q Consensus 10 vkakdipqlltflslitqglqealitqdvk 39 (107)
+|..|.||...||.-+..|-..|-|.....
T Consensus 31 ikkedypqifdflenvprgtktahirealr 60 (70)
T 2q2k_A 31 IKKEDYPQIFDFLENVPRGTKTAHIREALR 60 (70)
T ss_dssp EETTTSHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 401004699999973887763089999999
Done!