Query gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Sun May 22 12:57:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780123.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1us7_B HSP90 CO-chaperone CDC3 76.4 0.14 5.7E-06 28.8 -2.5 55 15-80 179-233 (265)
2 2k6l_A Putative uncharacterize 21.1 25 0.0011 15.8 0.9 11 64-74 28-39 (51)
3 2gmf_A Granulocyte-macrophage 17.4 54 0.0023 13.9 3.0 38 17-66 54-91 (127)
4 1n93_X P40 nucleoprotein; RNA 15.9 45 0.0019 14.4 1.2 25 15-39 77-101 (375)
5 2zu6_B Programmed cell death p 14.9 59 0.0025 13.7 1.6 18 57-74 279-296 (307)
6 2q2k_A Hypothetical protein; p 9.7 44 0.0018 14.4 -0.4 28 10-37 31-58 (70)
7 1s9a_A Pyrocatechase, chloroca 9.7 92 0.0039 12.6 2.2 29 51-79 29-57 (257)
8 2w2n_P Proprotein convertase s 8.0 66 0.0028 13.4 -0.0 32 64-97 6-37 (114)
9 2xsu_A Catechol 1,2 dioxygenas 7.9 1.1E+02 0.0046 12.1 3.9 23 54-76 58-80 (312)
10 3n9t_A PNPC; phospholipid bind 7.7 1.1E+02 0.0047 12.1 4.6 24 53-76 53-82 (290)
No 1
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, heat shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=76.42 E-value=0.14 Score=28.80 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 688999999999888988766455666523843434568999998997011127889998544542
Q gi|254780123|r 15 IPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPAL 80 (107)
Q Consensus 15 ipqlltflslitqglqealitqdvkaveavdpdlkkrvtvlaisymkrcgdkgksqflseilvpal 80 (107)
++..-.|-|| ...||+|+-|+|+-.|..|=-.++- --|-.+|+||+|-| +.||--
T Consensus 179 ldp~EVFesl-P~emQ~afet~dld~lnkvl~~M~v---EeAe~hm~rcidsG-------Lwvp~~ 233 (265)
T 1us7_B 179 LDPVEVYESL-PEELQKCFDVKDVQMLQDAISKMDP---TDAKYHMQRCIDSG-------LWVPNS 233 (265)
T ss_dssp CCHHHHHHHS-CTTCCCC-------CHHHHHTCCSS---SHHHHHHHHHHHHT-------SSCCTT
T ss_pred CCHHHHHHHC-CHHHHHHHHCCCHHHHHHHHHCCCH---HHHHHHHHHHHHCC-------CCCCCC
T ss_conf 7778887748-9999999943999999999973999---99999999998657-------776896
No 2
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=21.06 E-value=25 Score=15.80 Aligned_cols=11 Identities=45% Similarity=0.921 Sum_probs=4.8
Q ss_pred CCCH-HHHHHHH
Q ss_conf 1112-7889998
Q gi|254780123|r 64 GDKG-KSQFLSE 74 (107)
Q Consensus 64 gdkg-ksqflse 74 (107)
|.|| -|+|..|
T Consensus 28 grKGDLSrFiEe 39 (51)
T 2k6l_A 28 GRKGDLSRFIED 39 (51)
T ss_dssp CCSSCHHHHHHH
T ss_pred CCCCCHHHHHHH
T ss_conf 864429999999
No 3
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=17.38 E-value=54 Score=13.90 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999998889887664556665238434345689999989970111
Q gi|254780123|r 17 QLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDK 66 (107)
Q Consensus 17 qlltflslitqglqealitqdvkaveavdpdlkkrvtvlaisymkrcgdk 66 (107)
-|-|-|.|..|||+..|+ .|+...|..|-.|-+.|--.
T Consensus 54 ClQtRL~LYkqGLrGslt------------~L~g~LtmmA~hYk~~CppT 91 (127)
T 2gmf_A 54 CLQTRLELYKQGLRGSLT------------KLKGPLTMMASHYKQHCPPT 91 (127)
T ss_dssp SHHHHHHHHHHTCCGGGG------------GGHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCCHH------------HHCCHHHHHHHHHHHCCCCC
T ss_conf 899999999824435078------------86048999999987049779
No 4
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Probab=15.88 E-value=45 Score=14.36 Aligned_cols=25 Identities=32% Similarity=0.572 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6889999999998889887664556
Q gi|254780123|r 15 IPQLLTFLSLITQGLQEALITQDVK 39 (107)
Q Consensus 15 ipqlltflslitqglqealitqdvk 39 (107)
+..-|+||.+|-.||.+||.+-.|.
T Consensus 77 VtpSLvFLcflf~GLH~all~vGVs 101 (375)
T 1n93_X 77 VTPSLVFLCLLIPGLHAAFVHGGVP 101 (375)
T ss_dssp THHHHHHHHHHSTTHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 7801776777551378888633655
No 5
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=14.89 E-value=59 Score=13.66 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=9.4
Q ss_pred HHHHHHHCCCHHHHHHHH
Q ss_conf 998997011127889998
Q gi|254780123|r 57 ISYMKRCGDKGKSQFLSE 74 (107)
Q Consensus 57 isymkrcgdkgksqflse 74 (107)
.++.++|+.+|.-.|+||
T Consensus 279 ~~~~~~~p~~grkrfvse 296 (307)
T 2zu6_B 279 KQLRDLCPSRGRKRFVSE 296 (307)
T ss_dssp HHHHHTSCCC--------
T ss_pred HHHHHHCCCCCCCCCCCC
T ss_conf 999853876357462005
No 6
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=9.71 E-value=44 Score=14.41 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=20.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4120368899999999988898876645
Q gi|254780123|r 10 VKAKDIPQLLTFLSLITQGLQEALITQD 37 (107)
Q Consensus 10 vkakdipqlltflslitqglqealitqd 37 (107)
+|..|.||...||.-+..|-..|-|...
T Consensus 31 ikkedypqifdflenvprgtktahirea 58 (70)
T 2q2k_A 31 IKKEDYPQIFDFLENVPRGTKTAHIREA 58 (70)
T ss_dssp EETTTSHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 4010046999999738877630899999
No 7
>1s9a_A Pyrocatechase, chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGP TAM; 2.47A {Rhodococcus opacus} SCOP: b.3.6.1
Probab=9.68 E-value=92 Score=12.56 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 56899999899701112788999854454
Q gi|254780123|r 51 RVTVLAISYMKRCGDKGKSQFLSEILVPA 79 (107)
Q Consensus 51 rvtvlaisymkrcgdkgksqflseilvpa 79 (107)
.---.+|.|+.++|.++.-..||.+|+-.
T Consensus 29 ~E~~~~i~fl~~~G~~~E~~Ll~Dvl~~~ 57 (257)
T 1s9a_A 29 PEYETIMQYMISVGEAGEWPLWLDAFFET 57 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999973027352577888899
No 8
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase/receptor, PCSK9, proprotein convertase, EGF, cardiovascular disease; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P
Probab=8.01 E-value=66 Score=13.39 Aligned_cols=32 Identities=34% Similarity=0.638 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHH
Q ss_conf 1112788999854454226430000240035678
Q gi|254780123|r 64 GDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLV 97 (107)
Q Consensus 64 gdkgksqflseilvpalgthktfvdctdedfrlv 97 (107)
|.||....-. -.|.-||..||-.|....+||-
T Consensus 6 gskgskpmsa--eapehgttatfhrcakdpwrlp 37 (114)
T 2w2n_P 6 GSKGSKPMSA--EAPEHGTTATFHRCAKDPWRLP 37 (114)
T ss_dssp ------------------CCCEEECCSSGGGEEE
T ss_pred CCCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCC
T ss_conf 8999987765--6876675145666416854588
No 9
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsv_A*
Probab=7.91 E-value=1.1e+02 Score=12.13 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999899701112788999854
Q gi|254780123|r 54 VLAISYMKRCGDKGKSQFLSEIL 76 (107)
Q Consensus 54 vlaisymkrcgdkgksqflseil 76 (107)
-.+|.|+.++|..+....||.+|
T Consensus 58 ~~~~~fl~~~G~~~E~~LlsDvl 80 (312)
T 2xsu_A 58 WKGLEYLTDAGQANELGLLAGGL 80 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99999999863248501211200
No 10
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=7.67 E-value=1.1e+02 Score=12.07 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHCCCH------HHHHHHHHH
Q ss_conf 899999899701112------788999854
Q gi|254780123|r 53 TVLAISYMKRCGDKG------KSQFLSEIL 76 (107)
Q Consensus 53 tvlaisymkrcgdkg------ksqflseil 76 (107)
--.+|.|+.++|.++ ....||.+|
T Consensus 53 ~~~~~~~l~~~G~~~~~~~r~E~~ll~d~l 82 (290)
T 3n9t_A 53 WFEGIRFLTATGQKCDGKVRQEFILLSDTL 82 (290)
T ss_dssp HHHHHHHHHHHHHTCCSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEHHC
T ss_conf 999999999975404655332200010010
Done!