Query gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 107
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Sun May 22 07:30:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780123.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1us7b_ a.205.1.1 (B:) Hsp90 c 66.0 0.17 1.3E-05 26.8 -2.7 43 21-67 151-193 (201)
2 d1n93x_ a.206.1.1 (X:) P40 nuc 15.4 27 0.002 14.3 1.2 24 16-39 46-69 (343)
3 d1w7ca3 d.17.2.1 (A:170-315) L 13.4 13 0.00092 16.1 -0.9 32 58-91 3-43 (146)
4 d2gmfa_ a.26.1.2 (A:) Granuloc 12.5 42 0.0031 13.1 3.0 38 17-66 51-88 (121)
5 d1s9aa_ b.3.6.1 (A:) Chlorocat 10.5 49 0.0036 12.7 2.2 31 49-79 26-56 (256)
6 d2b9da1 g.91.1.1 (A:42-93) E7 7.8 64 0.0047 12.1 1.4 21 84-104 19-39 (52)
7 d1tf5a4 c.37.1.19 (A:396-570) 5.7 28 0.002 14.2 -1.7 22 50-71 121-142 (175)
8 d2ewla1 g.91.1.1 (A:5-56) E7 o 5.6 83 0.0061 11.4 1.4 21 84-104 20-40 (52)
9 d1elka_ a.118.9.2 (A:) Tom1 pr 4.8 95 0.007 11.1 5.2 74 5-78 16-101 (153)
10 d1rfya_ a.2.13.1 (A:) Transcri 3.5 1.2E+02 0.0089 10.5 0.5 27 69-95 17-43 (89)
No 1
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.96 E-value=0.17 Score=26.81 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999988898876645566652384343456899999899701112
Q gi|254780123|r 21 FLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKG 67 (107)
Q Consensus 21 flslitqglqealitqdvkaveavdpdlkkrvtvlaisymkrcgdkg 67 (107)
|-|| ...+|+|+-|+|+-.+..|=-.++-- -|--+|+||.|-|
T Consensus 151 Fesl-P~emQ~afes~dld~ln~vl~~M~~e---eAe~h~~rcidsG 193 (201)
T d1us7b_ 151 YESL-PEELQKCFDVKDVQMLQDAISKMDPT---DAKYHMQRCIDSG 193 (201)
T ss_dssp HHHS-CTTCCCC-------CHHHHHTCCSSS---HHHHHHHHHHHHT
T ss_pred HHHC-CHHHHHHHHCCCHHHHHHHHHHCCHH---HHHHHHHHHHHCC
T ss_conf 8739-99999999549899999999819999---9999999998558
No 2
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus [TaxId: 12455]}
Probab=15.41 E-value=27 Score=14.25 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999998889887664556
Q gi|254780123|r 16 PQLLTFLSLITQGLQEALITQDVK 39 (107)
Q Consensus 16 pqlltflslitqglqealitqdvk 39 (107)
..-|+||.+|-.||.+|+.+-.|.
T Consensus 46 tpSLvFLcflf~GLH~alL~vGVs 69 (343)
T d1n93x_ 46 TPSLVFLCLLIPGLHAAFVHGGVP 69 (343)
T ss_dssp HHHHHHHHHHSTTHHHHHHHTTCC
T ss_pred CCHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 702776777551378887633655
No 3
>d1w7ca3 d.17.2.1 (A:170-315) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}
Probab=13.38 E-value=13 Score=16.13 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHCCCHHHHHHHHHH---------HHHHCCCCHHCCCCC
Q ss_conf 9899701112788999854---------454226430000240
Q gi|254780123|r 58 SYMKRCGDKGKSQFLSEIL---------VPALGTHKTFVDCTD 91 (107)
Q Consensus 58 symkrcgdkgksqflseil---------vpalgthktfvdctd 91 (107)
+||.|--.++|+|||++-+ .--. .-||-||++
T Consensus 3 ~~~~~~~s~~~~~ll~~~~~t~~l~di~~~~~--g~Ty~d~~~ 43 (146)
T d1w7ca3 3 GHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLI--GVPYEDMGC 43 (146)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHH--SSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHC--CCCEEECCC
T ss_conf 53543327888899986523236999999870--987461566
No 4
>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.54 E-value=42 Score=13.13 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 89999999998889887664556665238434345689999989970111
Q gi|254780123|r 17 QLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDK 66 (107)
Q Consensus 17 qlltflslitqglqealitqdvkaveavdpdlkkrvtvlaisymkrcgdk 66 (107)
-|-|-|.|..|||+..|. .||...|..|-.|-+.|--.
T Consensus 51 ClQtRL~LYkqGLrGslt------------~L~g~LtmmA~hYk~~CPpT 88 (121)
T d2gmfa_ 51 CLQTRLELYKQGLRGSLT------------KLKGPLTMMASHYKQHCPPT 88 (121)
T ss_dssp SHHHHHHHHHHTCCGGGG------------GGHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCCHH------------HHCCHHHHHHHHHHHCCCCC
T ss_conf 899999999956424078------------75058999999987049779
No 5
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]}
Probab=10.53 E-value=49 Score=12.74 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 3456899999899701112788999854454
Q gi|254780123|r 49 KKRVTVLAISYMKRCGDKGKSQFLSEILVPA 79 (107)
Q Consensus 49 kkrvtvlaisymkrcgdkgksqflseilvpa 79 (107)
...---.+|.||.++|.++.-..||++|+-.
T Consensus 26 T~~E~~~~i~fl~~~G~~~E~~Ll~Dvl~~~ 56 (256)
T d1s9aa_ 26 TTPEYETIMQYMISVGEAGEWPLWLDAFFET 56 (256)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999999960237075898899999
No 6
>d2b9da1 g.91.1.1 (A:42-93) E7 oncoprotein {Human papillomavirus type 1a [TaxId: 10583]}
Probab=7.78 E-value=64 Score=12.10 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.9
Q ss_pred CHHCCCCCHHHHHHHHHHHHH
Q ss_conf 300002400356788997643
Q gi|254780123|r 84 KTFVDCTDEDFRLVEAKLLEQ 104 (107)
Q Consensus 84 ktfvdctdedfrlveaklleq 104 (107)
+-+|.||++|.|..|--|++.
T Consensus 19 RL~V~at~~~IR~lqqLLlg~ 39 (52)
T d2b9da1 19 RLTVLADHSAIRQLEEMLLRS 39 (52)
T ss_dssp EEEEEECHHHHHHHHHHHHHT
T ss_pred EEEEEECHHHHHHHHHHHCCC
T ss_conf 999995828789999982387
No 7
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=5.69 E-value=28 Score=14.17 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 4568999998997011127889
Q gi|254780123|r 50 KRVTVLAISYMKRCGDKGKSQF 71 (107)
Q Consensus 50 krvtvlaisymkrcgdkgksqf 71 (107)
.|+..-...--.|+||.|.|||
T Consensus 121 ~Rid~Ql~GR~gRQGdpGs~~~ 142 (175)
T d1tf5a4 121 RRIDNQLRGRSGRQGDPGITQF 142 (175)
T ss_dssp HHHHHHHHTTSSGGGCCEEEEE
T ss_pred HHHHHHHHCCHHHHCCCCCCEE
T ss_conf 6678888423442078745189
No 8
>d2ewla1 g.91.1.1 (A:5-56) E7 oncoprotein {Human papillomavirus type 45 [TaxId: 10593]}
Probab=5.65 E-value=83 Score=11.44 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.5
Q ss_pred CHHCCCCCHHHHHHHHHHHHH
Q ss_conf 300002400356788997643
Q gi|254780123|r 84 KTFVDCTDEDFRLVEAKLLEQ 104 (107)
Q Consensus 84 ktfvdctdedfrlveaklleq 104 (107)
+-+|.+|++|.|..+--|+..
T Consensus 20 rL~V~st~~~iR~lqqLLlg~ 40 (52)
T d2ewla1 20 ELTVESSAEDLRTLQQLFLST 40 (52)
T ss_dssp EEEEECCHHHHHHHHHHHHHT
T ss_pred EEEEEECHHHHHHHHHHHCCC
T ss_conf 999994828789999982278
No 9
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.77 E-value=95 Score=11.09 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=35.9
Q ss_pred HHHHHHHH----HCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCH-----HHHHH
Q ss_conf 88886412----0368899999999988---898876645566652384343456899999899701112-----78899
Q gi|254780123|r 5 FIEEAVKA----KDIPQLLTFLSLITQG---LQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKG-----KSQFL 72 (107)
Q Consensus 5 fieeavka----kdipqlltflslitqg---lqealitqdvkaveavdpdlkkrvtvlaisymkrcgdkg-----ksqfl 72 (107)
.||.|... -|....+.+--+|... -++|...---|-..--+|..--+--.|.-+-||.||.+= ...|+
T Consensus 16 ~vekAT~~~l~~~dw~~il~icD~In~~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl 95 (153)
T d1elka_ 16 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 95 (153)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99997487888636999999999992798679999999999982599899999999999999997569999999538889
Q ss_pred HHHHHH
Q ss_conf 985445
Q gi|254780123|r 73 SEILVP 78 (107)
Q Consensus 73 seilvp 78 (107)
.++++-
T Consensus 96 ~~ll~~ 101 (153)
T d1elka_ 96 ESVLVR 101 (153)
T ss_dssp HHHTHH
T ss_pred HHHHHH
T ss_conf 999999
No 10
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.47 E-value=1.2e+02 Score=10.47 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCHHCCCCCHHHH
Q ss_conf 889998544542264300002400356
Q gi|254780123|r 69 SQFLSEILVPALGTHKTFVDCTDEDFR 95 (107)
Q Consensus 69 sqflseilvpalgthktfvdctdedfr 95 (107)
++-+.-+-|.|.-+|...|+-.|+-|.
T Consensus 17 ~~d~E~lTv~AIr~hR~LvekAd~lFQ 43 (89)
T d1rfya_ 17 PTDLETITIDAIRTHRRLVEKADELFQ 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 345688759999999999999999998
Done!