RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>3jys_A SUSD superfamily protein; structural genomics, joint center
           for structural genomics, JCSG, protein structure
           initiative, PSI-2; HET: MSE; 2.00A {Bacteroides vulgatus
           atcc 8482} (A:1-179,A:289-351,A:457-499)
          Length = 285

 Score = 27.5 bits (60), Expect = 0.69
 Identities = 8/77 (10%), Positives = 17/77 (22%), Gaps = 9/77 (11%)

Query: 14  DIPQLLTFLSLITQGLQEALITQD-VKAV-EAVDPDLKKRVTVLAISYMKRCGDKGKSQF 71
             P        IT+            + +   ++ +L +    L        G +  S  
Sbjct: 139 LPP-------FITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRQGWAGFRATSNL 191

Query: 72  LSEILVPALGTHKTFVD 88
           +           K    
Sbjct: 192 VHLFDFQNDEEPKASEI 208


>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU;
          2.30A {Homo sapiens} (A:1-90)
          Length = 90

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 42 EAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVD----CTDEDFRLV 97
          + V    KK++ V      +        + + E  +     +   V     C  E   LV
Sbjct: 28 QGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLV 87


>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
           autoinhibition, ITAM, hydrogen bonding network, TCR
           signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
           (A:296-417)
          Length = 122

 Score = 25.4 bits (55), Expect = 2.8
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 42  EAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVD----CTDEDFRLV 97
           + V    KK++ V      +        + + E  +     +   V     C  E   LV
Sbjct: 59  QGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLV 118


>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation,
          hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A
          3cl8_A 1z7a_A (A:43-79)
          Length = 37

 Score = 24.2 bits (53), Expect = 5.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 64 GDKGKSQFLSEIL 76
          GDK    FLSE++
Sbjct: 4  GDKESEAFLSEMV 16


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 751,037
Number of extensions: 28318
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 8
Length of query: 107
Length of database: 4,956,049
Length adjustment: 63
Effective length of query: 44
Effective length of database: 2,826,334
Effective search space: 124358696
Effective search space used: 124358696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)