RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)



>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 201

 Score = 28.6 bits (64), Expect = 0.14
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 27  QGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRCGDKG 67
           + LQ+    +DV+ ++     +       A  +M+RC D G
Sbjct: 156 EELQKCFDVKDVQMLQDAISKMDPTD---AKYHMQRCIDSG 193


>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia)
           [TaxId: 3767]}
          Length = 200

 Score = 24.7 bits (53), Expect = 2.4
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 25  ITQGLQEALITQDVKA--VEAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPALGT 82
           +++ L +A I  D K   +  ++  ++            +C  KG +  L EI + +  +
Sbjct: 117 VSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKL--KCQKKGTTTELVEITLCSDKS 174

Query: 83  HKTFVDCTD 91
            + F+DC  
Sbjct: 175 GEHFIDCPH 183


>d2hrca1 c.92.1.1 (A:65-423) Ferrochelatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 359

 Score = 24.0 bits (51), Expect = 3.4
 Identities = 8/99 (8%), Positives = 29/99 (29%), Gaps = 13/99 (13%)

Query: 4   HFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYMKRC 63
             +++ ++  +       +     G    L  Q  ++++ +    +K + ++ I++    
Sbjct: 218 ATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277

Query: 64  -------GDKGKSQFLSEI------LVPALGTHKTFVDC 89
                    +       E          +L  +  F   
Sbjct: 278 IETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKA 316


>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
          [TaxId: 12455]}
          Length = 343

 Score = 22.7 bits (48), Expect = 9.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 19 LTFLSLITQGLQEALITQDV 38
          L FL L+  GL  A +   V
Sbjct: 49 LVFLCLLIPGLHAAFVHGGV 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0476    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,786
Number of extensions: 15014
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 6
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)