BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780123|ref|YP_003064536.1| hypothetical protein
CLIBASIA_00010 [Candidatus Liberibacter asiaticus str. psy62]
         (107 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780123|ref|YP_003064536.1| hypothetical protein CLIBASIA_00010 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 107

 Score =  215 bits (548), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60
           MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM
Sbjct: 1   MSVHFIEEAVKAKDIPQLLTFLSLITQGLQEALITQDVKAVEAVDPDLKKRVTVLAISYM 60

Query: 61  KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107
           KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA
Sbjct: 61  KRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAKLLEQSDA 107


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 22.3 bits (46), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 41  VEAVDPDLKKRVTVLAISYMKRCGDKGKSQFLSEILVPALGTHKTFVDCTDEDFRLVEAK 100
           V  V P    + T+L I+ +    D+G     +++        K+F+ C+   F   E +
Sbjct: 39  VALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSFLRCSKIGFVYQEHR 98

Query: 101 LL 102
           LL
Sbjct: 99  LL 100


>gi|254780299|ref|YP_003064712.1| acyl-CoA dehydrogenase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 562

 Score = 20.8 bits (42), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%)

Query: 49  KKRVTVL--AISYMKRCGDKGKSQFLSE 74
           KK +T+L  +IS  K   DKG ++FL+E
Sbjct: 481 KKVITILRDSISLCKE--DKGLARFLTE 506


>gi|254780837|ref|YP_003065250.1| putative restriction endonuclease S subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 426

 Score = 20.4 bits (41), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 28  GLQEALITQDVKAVEAVDPDLKKRVTV 54
           GL+++L  +DVK +  + P +K++  +
Sbjct: 352 GLRQSLKFEDVKRLPVLVPPIKEQFDI 378


>gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 20.4 bits (41), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 75  ILVPALGTHKTFVDCTDE 92
           IL+  L T K  +DC +E
Sbjct: 86  ILIENLSTEKKVLDCLEE 103


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1398

 Score = 20.0 bits (40), Expect = 9.9,   Method: Composition-based stats.
 Identities = 6/29 (20%), Positives = 15/29 (51%)

Query: 48  LKKRVTVLAISYMKRCGDKGKSQFLSEIL 76
           +KK ++ +  +  + CG K    F  +++
Sbjct: 597 IKKNISAMVDTIYRHCGQKSTVAFCDDLM 625


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,330
Number of Sequences: 1233
Number of extensions: 1856
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 328,796
effective HSP length: 62
effective length of query: 45
effective length of database: 252,350
effective search space: 11355750
effective search space used: 11355750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 32 (16.9 bits)