HHsearch alignment for GI: 254780124 and conserved domain: COG1468

>COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].
Probab=98.30  E-value=4.3e-05  Score=52.94  Aligned_cols=169  Identities=17%  Similarity=0.168  Sum_probs=91.1

Q ss_pred             CCCCCCCHHHHHCCCHHHHH-HCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             56184236778718323886-2138999898899----989999999999724576534322010456453775788999
Q gi|254780124|r    5 AFLSASSSHRWLKCPIAPTL-ESKIPQTTSIYAS----EGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTEMAS   79 (388)
Q Consensus         5 A~LSpSs~~rwl~CP~s~~L-e~~~pd~~S~aA~----~GT~~H~llE~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~   79 (388)
T Consensus        14 ~~i~~~~v~~y~~Cprk~w~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-------------------------   68 (190)
T COG1468          14 MRITGSDVNEYLYCPRKLWLFSRGGPEESPEVYSEGVELGKLIHEKLEKFLRDEK-------------------------   68 (190)
T ss_pred             EEECHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCC-------------------------
T ss_conf             2412888788885679899998448656500025135555788888998851244-------------------------


Q ss_pred             HHHHHHHHHHCCCCCCEEEEE-EEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999999998503787368877-5532000440589999999985997999981136887674466879999999999843
Q gi|254780124|r   80 SVSMVLAYVRTFSGPFLSETE-VPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQY  158 (388)
Q Consensus        80 ~v~~~~~~~r~~~~~~~ve~E-~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~  158 (388)
T Consensus        69 --------------~--v~l~~~~i----~~d~lk~~~~~~~----~~~~vEiK~~~~~~~~~-~~~Ql~~yly-l~e~~  122 (190)
T COG1468          69 --------------E--VELEGEWI----KIDFLKGRMDLEV----KDVVVEIKKSKKMEKAP-HKLQLAYYLY-LEEKL  122 (190)
T ss_pred             --------------C--CEECCEEE----EEEEECCCCEEEC----CCEEEEEECCCCCCCCH-HHHHHHHHHH-HHHHH
T ss_conf             --------------6--32312056----5542235300441----42138986576765354-7999999999-99860


Q ss_pred             CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             83567651389999983048877543025898899999999999999998577653047766788866667257644562
Q gi|254780124|r  159 GDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCP  238 (388)
Q Consensus       159 ~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~~~~g~~CrfC~~k~~Cr  238 (388)
T Consensus       123 g~-----~v~~g~i~Y~~~~k---~~~Vei~~~~~e~-v~~~~~ei~~ile~~------~~p~~~~~~~C~~C~y~~iC~  187 (190)
T COG1468         123 GI-----AVAKGYIYYPKLKK---RVEVELTEELREE-VERVLKEIEEILEGG------KPPPPKKKKKCKKCAYREICF  187 (190)
T ss_pred             CC-----EEEEEEEEECCCCC---EEEEEECHHHHHH-HHHHHHHHHHHHHCC------CCCCCCCCCCCCCCCCCEECC
T ss_conf             92-----00368998525673---7999808999999-999999999998289------999999988699998633426


Q ss_pred             H
Q ss_conf             0
Q gi|254780124|r  239 A  239 (388)
Q Consensus       239 a  239 (388)
T Consensus       188 ~  188 (190)
T COG1468         188 P  188 (190)
T ss_pred             C
T ss_conf             7