HHsearch alignment for GI: 254780124 and conserved domain: COG1468
>COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].
Probab=98.30 E-value=4.3e-05 Score=52.94 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCCCCCCHHHHHCCCHHHHH-HCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 56184236778718323886-2138999898899----989999999999724576534322010456453775788999
Q gi|254780124|r 5 AFLSASSSHRWLKCPIAPTL-ESKIPQTTSIYAS----EGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTEMAS 79 (388)
Q Consensus 5 A~LSpSs~~rwl~CP~s~~L-e~~~pd~~S~aA~----~GT~~H~llE~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~ 79 (388)
T Consensus 14 ~~i~~~~v~~y~~Cprk~w~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~------------------------- 68 (190)
T COG1468 14 MRITGSDVNEYLYCPRKLWLFSRGGPEESPEVYSEGVELGKLIHEKLEKFLRDEK------------------------- 68 (190)
T ss_pred EEECHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCC-------------------------
T ss_conf 2412888788885679899998448656500025135555788888998851244-------------------------
Q ss_pred HHHHHHHHHHCCCCCCEEEEE-EEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999999998503787368877-5532000440589999999985997999981136887674466879999999999843
Q gi|254780124|r 80 SVSMVLAYVRTFSGPFLSETE-VPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQY 158 (388)
Q Consensus 80 ~v~~~~~~~r~~~~~~~ve~E-~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~ 158 (388)
T Consensus 69 --------------~--v~l~~~~i----~~d~lk~~~~~~~----~~~~vEiK~~~~~~~~~-~~~Ql~~yly-l~e~~ 122 (190)
T COG1468 69 --------------E--VELEGEWI----KIDFLKGRMDLEV----KDVVVEIKKSKKMEKAP-HKLQLAYYLY-LEEKL 122 (190)
T ss_pred --------------C--CEECCEEE----EEEEECCCCEEEC----CCEEEEEECCCCCCCCH-HHHHHHHHHH-HHHHH
T ss_conf --------------6--32312056----5542235300441----42138986576765354-7999999999-99860
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83567651389999983048877543025898899999999999999998577653047766788866667257644562
Q gi|254780124|r 159 GDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCP 238 (388)
Q Consensus 159 ~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~~~~g~~CrfC~~k~~Cr 238 (388)
T Consensus 123 g~-----~v~~g~i~Y~~~~k---~~~Vei~~~~~e~-v~~~~~ei~~ile~~------~~p~~~~~~~C~~C~y~~iC~ 187 (190)
T COG1468 123 GI-----AVAKGYIYYPKLKK---RVEVELTEELREE-VERVLKEIEEILEGG------KPPPPKKKKKCKKCAYREICF 187 (190)
T ss_pred CC-----EEEEEEEEECCCCC---EEEEEECHHHHHH-HHHHHHHHHHHHHCC------CCCCCCCCCCCCCCCCCEECC
T ss_conf 92-----00368998525673---7999808999999-999999999998289------999999988699998633426
Q ss_pred H
Q ss_conf 0
Q gi|254780124|r 239 A 239 (388)
Q Consensus 239 a 239 (388)
T Consensus 188 ~ 188 (190)
T COG1468 188 P 188 (190)
T ss_pred C
T ss_conf 7