HHsearch alignment for GI: 254780124 and conserved domain: COG2251
>COG2251 Predicted nuclease (RecB family) [General function prediction only].
Probab=97.91 E-value=0.0013 Score=43.22 Aligned_cols=254 Identities=15% Similarity=0.092 Sum_probs=116.3
Q ss_pred CCCCCCHHHHHCCCHHHHHHC----CCCCCCCHHH---HHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 618423677871832388621----3899989889---9989999--999999724576534322010456453775788
Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLES----KIPQTTSIYA---SEGTFAH--NLLAHCLEQGVDAETVSHQKLTFENDTRIVDTE 76 (388)
Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~----~~pd~~S~aA---~~GT~~H--~llE~~l~~~l~~~~~~~~~~~~~~~~~~~~~e 76 (388)
T Consensus 2 ~~~~s~l~~~~Rc~rr~~l~~~~~~~~r~~~~~~l~kl~~~~~~~~~~~~~~~f--~~~e~--~~~~~~i~~r~~~t~~~ 77 (474)
T COG2251 2 LYSASDLLAYQRCQRRALLRTFDARLGRGPPVAVLLKLPQERAALINDHELKEF--QLREE--ETAKRLIIGRAAYTGTL 77 (474)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHCCC--CCCCCEEECCCCCCHHH
T ss_conf 553889999874115678888777644585277887776789887668987663--11352--34531231443321788
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999850378736887755320004405899999999859979999811368876744668799999999998
Q gi|254780124|r 77 MASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALH 156 (388)
Q Consensus 77 ~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~ 156 (388)
T Consensus 78 ~~~~a~~~~r~~L~~n~~~~-~~~~~----~~~~~~vg~pD~likdG~~yriv~~kl~k~pK~~--~~lq~a~ya~~La~ 150 (474)
T COG2251 78 MAAGADEIFREVLIANRAPL-YQPVL----VGKIELVGFPDFLIKDGDVYRIVDAKLAKRPKLP--YRLQAAFYALLLAK 150 (474)
T ss_pred HHHHHHHHHHHHHHHCCCCC-CCCCC----CCCCEEECCCCCEECCCCEEEEEECCCCCCCCCH--HHHHHHHHHHHHHH
T ss_conf 87557899999997277621-26410----0361460478524416867888522001376507--89999999999985
Q ss_pred HCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 4383567651389999983048877543025898899999999999999998577653047766-788866667257644
Q gi|254780124|r 157 QYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEH-YGVNDDSCRFCRAKV 235 (388)
Q Consensus 157 ~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~-~~~~g~~CrfC~~k~ 235 (388)
T Consensus 151 ~g~~v~~~a---el~l~~~~-----~~---~y~-~~~l~~~~~v~~~l~~~~~~L---~~~~~~avr~~r~rC~~C~f~p 215 (474)
T COG2251 151 SGVPVAGNA---ELSLIGKV-----AV---PYS-VEDLIWLNDVQRFLDTIEEDL---HYEAKTAVRWIRARCTTCQFEP 215 (474)
T ss_pred CCCCCCCCC---EEEECCCC-----CC---CCC-HHHHCCCHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHCCH
T ss_conf 178667876---14402454-----56---662-233224157799999999972---3678875414664411854143
Q ss_pred CCCHH--HHHHHHHH-HC---------CCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56201--34678763-02---------2005999999999-9543899999999999999999
Q gi|254780124|r 236 RCPAL--SRHVLLEA-TK---------DPSTNTTVELSKA-YSSISLIKSYVKACEDEMFKRL 285 (388)
Q Consensus 236 ~Cra~--a~~~l~~~-~~---------~p~~l~~~e~~~~-l~~~~~l~~w~~~v~~~a~~~~ 285 (388)
T Consensus 216 ~C~~~a~e~~~L~Lv~Gi~~~r~~~l~~~GI~Ti~~LA~~~~~~~~~~~ga~~~~~~~l~~qa 278 (474)
T COG2251 216 QCESEALEEDDLSLVPGITPSRYDVLEEVGITTIEDLADASLPILELVAGALTALAAQLVLQA 278 (474)
T ss_pred HHHHHHHHCCCEECCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 356888513551013799878899999738223999975255402566546777789999999