HHsearch alignment for GI: 254780124 and conserved domain: PRK13909

>PRK13909 putative recombination protein RecB; Provisional.
Probab=99.01  E-value=8.5e-09  Score=77.27  Aligned_cols=134  Identities=12%  Similarity=0.067  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--C-CCCCHHHHHHHHHHHHHHHHH--HHCCCCCCEEEEEEEEEEECC
Q ss_conf             88999899999999997245765343220104--5-645377578899999999999--850378736887755320004
Q gi|254780124|r   34 IYASEGTFAHNLLAHCLEQGVDAETVSHQKLT--F-ENDTRIVDTEMASSVSMVLAY--VRTFSGPFLSETEVPLEPFTT  108 (388)
Q Consensus        34 ~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~--~-~~~~~~~~~e~~~~v~~~~~~--~r~~~~~~~ve~E~~~~~~~~  108 (388)
T Consensus       766 ~~~~~G~~iH~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~--~  843 (911)
T PRK13909        766 EAIYFGEALHYCLEMLYAFKEENLKVLKNLLKNKYGHFLSESDFEDLEKRLELLINNKEFQELIKDGKLLKEQALLF--N  843 (911)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEEE--C
T ss_conf             88989999999996586579867899999998743057998999999999999975966898717885568777865--8


Q ss_pred             CEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECC
Q ss_conf             4058999999998599799998113688767446687999999999984383567651389999983048
Q gi|254780124|r  109 EPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVR  178 (388)
Q Consensus       109 ~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~  178 (388)
T Consensus       844 --g~~~~ID~l~~~~~~~~IiDYKT~~~~--~~~y~~QL~~Y~~al~~i~~~-----k~v~~~l~yl~~~  904 (911)
T PRK13909        844 --GELKQIDLLLEKDEEYFVIDYKSSKKY--QDKHKAQVREYKEAISEIIPK-----KKVRAFIIYLLED  904 (911)
T ss_pred             --CEECCCEEEEEECCEEEEEECCCCCCC--CHHHHHHHHHHHHHHHHHCCC-----CEEEEEEEEECCC
T ss_conf             --806680489998999999973889998--568999999999999987799-----9468999995698