HHsearch alignment for GI: 254780124 and conserved domain: PRK13909
>PRK13909 putative recombination protein RecB; Provisional.
Probab=99.01 E-value=8.5e-09 Score=77.27 Aligned_cols=134 Identities=12% Similarity=0.067 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--C-CCCCHHHHHHHHHHHHHHHHH--HHCCCCCCEEEEEEEEEEECC
Q ss_conf 88999899999999997245765343220104--5-645377578899999999999--850378736887755320004
Q gi|254780124|r 34 IYASEGTFAHNLLAHCLEQGVDAETVSHQKLT--F-ENDTRIVDTEMASSVSMVLAY--VRTFSGPFLSETEVPLEPFTT 108 (388)
Q Consensus 34 ~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~--~-~~~~~~~~~e~~~~v~~~~~~--~r~~~~~~~ve~E~~~~~~~~ 108 (388)
T Consensus 766 ~~~~~G~~iH~~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~--~ 843 (911)
T PRK13909 766 EAIYFGEALHYCLEMLYAFKEENLKVLKNLLKNKYGHFLSESDFEDLEKRLELLINNKEFQELIKDGKLLKEQALLF--N 843 (911)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEEEE--C
T ss_conf 88989999999996586579867899999998743057998999999999999975966898717885568777865--8
Q ss_pred CEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECC
Q ss_conf 4058999999998599799998113688767446687999999999984383567651389999983048
Q gi|254780124|r 109 EPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVR 178 (388)
Q Consensus 109 ~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~ 178 (388)
T Consensus 844 --g~~~~ID~l~~~~~~~~IiDYKT~~~~--~~~y~~QL~~Y~~al~~i~~~-----k~v~~~l~yl~~~ 904 (911)
T PRK13909 844 --GELKQIDLLLEKDEEYFVIDYKSSKKY--QDKHKAQVREYKEAISEIIPK-----KKVRAFIIYLLED 904 (911)
T ss_pred --CEECCCEEEEEECCEEEEEECCCCCCC--CHHHHHHHHHHHHHHHHHCCC-----CEEEEEEEEECCC
T ss_conf --806680489998999999973889998--568999999999999987799-----9468999995698