HHsearch alignment for GI: 254780124 and conserved domain: TIGR00372

>TIGR00372 cas4 CRISPR-associated protein Cas4; InterPro: IPR013343 This entry consists of conserved proteins found in many prokaryotic genomes whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis suggests that they be nucleases like RecB (IPR004586 from INTERPRO), functioning as part of a hypothetical DNA repair system , . .
Probab=99.29  E-value=1.6e-10  Score=88.54  Aligned_cols=186  Identities=19%  Similarity=0.227  Sum_probs=116.4

Q ss_pred             CCCCCHHHHHCCCHHHHHHC--CCCCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18423677871832388621--3899989---889998999999999972457653432201045645377578899999
Q gi|254780124|r    7 LSASSSHRWLKCPIAPTLES--KIPQTTS---IYASEGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTEMASSV   81 (388)
Q Consensus         7 LSpSs~~rwl~CP~s~~Le~--~~pd~~S---~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~v   81 (388)
T Consensus         1 ~~~s~v~~Y~yCPr~~~~~~~~~~~~~~~~~~~~m~~G~~~~~~~~~~~r~~~---------------------------   53 (206)
T TIGR00372         1 ITVSDVKEYLYCPRKLWLMKKGGSEEESEERKVSMEEGRLIHEEAERAVRKFL---------------------------   53 (206)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_conf             95667888875126999997525546754465012321466678765678887---------------------------


Q ss_pred             HHHHHHHHCCC-CCCEEEEEEEEEEECCCEEEEEEEEEEEEECC------EEEEEEEECCCCC---CCC--CCCCHHHHH
Q ss_conf             99999985037-87368877553200044058999999998599------7999981136887---674--466879999
Q gi|254780124|r   82 SMVLAYVRTFS-GPFLSETEVPLEPFTTEPGATGTADILIFNST------QWIIVDFKYGAGV---PVK--AENNTQLML  149 (388)
Q Consensus        82 ~~~~~~~r~~~-~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg------~l~IiDyKtGk~~---~v~--a~~n~QL~l  149 (388)
T Consensus        54 -------~~~~~~~~~~~~~v~l~~~~~g~~l~G~~D~~~~~~~~~~~g~~~~pvE~K~~~~~~~~~~~~~~~~~~Ql~a  126 (206)
T TIGR00372        54 -------KSLGFEEVKEEKEVELKSKKYGKGLKGVIDVVLEEDGEIGKGAEPVPVEVKSGKAKKRLLRERGLAHKLQLLA  126 (206)
T ss_pred             -------HHCCCCEEEEECCEEECCCCCCCEEECCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf             -------6403300222101453278546415401478986156444652012676762446677643565235789999


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCC
Q ss_conf             999999843835676513899999830488775430258988999999999999999985776530477667--888666
Q gi|254780124|r  150 YACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHY--GVNDDS  227 (388)
Q Consensus       150 YALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~--~~~g~~  227 (388)
T Consensus       127 Ya~~~~~~~~~~~~~--i~~~~~~y~~~~~~~--y~v~~~~~~-~k~~~~~~~~i~~~~~~-------~~~P~~~~~~~k  194 (206)
T TIGR00372       127 YALLLEERYGVEVSD--IVKGYLLYLEEGKKV--YEVEISEEL-RKKAVKLIEKIEKLLEG-------EKLPPPPKKSRK  194 (206)
T ss_pred             HHHHHHHHCCCCHHH--HHEEEEEEECCCEEE--EEEEECHHH-HHHHHHHHHHHHHHHHC-------CCCCCCCCCCCC
T ss_conf             999985521843006--002202563077389--998628248-99999999999999848-------815576888775


Q ss_pred             CCCCCCCCCCC
Q ss_conf             67257644562
Q gi|254780124|r  228 CRFCRAKVRCP  238 (388)
Q Consensus       228 CrfC~~k~~Cr  238 (388)
T Consensus       195 C~~C~y~~~C~  205 (206)
T TIGR00372       195 CKFCPYREICL  205 (206)
T ss_pred             CCCCCCCCCCC
T ss_conf             77755521258