HHsearch alignment for GI: 254780124 and conserved domain: TIGR00372
>TIGR00372 cas4 CRISPR-associated protein Cas4; InterPro: IPR013343 This entry consists of conserved proteins found in many prokaryotic genomes whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis suggests that they be nucleases like RecB (IPR004586 from INTERPRO), functioning as part of a hypothetical DNA repair system , . .
Probab=99.29 E-value=1.6e-10 Score=88.54 Aligned_cols=186 Identities=19% Similarity=0.227 Sum_probs=116.4
Q ss_pred CCCCCHHHHHCCCHHHHHHC--CCCCCCC---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 18423677871832388621--3899989---889998999999999972457653432201045645377578899999
Q gi|254780124|r 7 LSASSSHRWLKCPIAPTLES--KIPQTTS---IYASEGTFAHNLLAHCLEQGVDAETVSHQKLTFENDTRIVDTEMASSV 81 (388)
Q Consensus 7 LSpSs~~rwl~CP~s~~Le~--~~pd~~S---~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~v 81 (388)
T Consensus 1 ~~~s~v~~Y~yCPr~~~~~~~~~~~~~~~~~~~~m~~G~~~~~~~~~~~r~~~--------------------------- 53 (206)
T TIGR00372 1 ITVSDVKEYLYCPRKLWLMKKGGSEEESEERKVSMEEGRLIHEEAERAVRKFL--------------------------- 53 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_conf 95667888875126999997525546754465012321466678765678887---------------------------
Q ss_pred HHHHHHHHCCC-CCCEEEEEEEEEEECCCEEEEEEEEEEEEECC------EEEEEEEECCCCC---CCC--CCCCHHHHH
Q ss_conf 99999985037-87368877553200044058999999998599------7999981136887---674--466879999
Q gi|254780124|r 82 SMVLAYVRTFS-GPFLSETEVPLEPFTTEPGATGTADILIFNST------QWIIVDFKYGAGV---PVK--AENNTQLML 149 (388)
Q Consensus 82 ~~~~~~~r~~~-~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg------~l~IiDyKtGk~~---~v~--a~~n~QL~l 149 (388)
T Consensus 54 -------~~~~~~~~~~~~~v~l~~~~~g~~l~G~~D~~~~~~~~~~~g~~~~pvE~K~~~~~~~~~~~~~~~~~~Ql~a 126 (206)
T TIGR00372 54 -------KSLGFEEVKEEKEVELKSKKYGKGLKGVIDVVLEEDGEIGKGAEPVPVEVKSGKAKKRLLRERGLAHKLQLLA 126 (206)
T ss_pred -------HHCCCCEEEEECCEEECCCCCCCEEECCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf -------6403300222101453278546415401478986156444652012676762446677643565235789999
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCC
Q ss_conf 999999843835676513899999830488775430258988999999999999999985776530477667--888666
Q gi|254780124|r 150 YACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHY--GVNDDS 227 (388)
Q Consensus 150 YALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~--~~~g~~ 227 (388)
T Consensus 127 Ya~~~~~~~~~~~~~--i~~~~~~y~~~~~~~--y~v~~~~~~-~k~~~~~~~~i~~~~~~-------~~~P~~~~~~~k 194 (206)
T TIGR00372 127 YALLLEERYGVEVSD--IVKGYLLYLEEGKKV--YEVEISEEL-RKKAVKLIEKIEKLLEG-------EKLPPPPKKSRK 194 (206)
T ss_pred HHHHHHHHCCCCHHH--HHEEEEEEECCCEEE--EEEEECHHH-HHHHHHHHHHHHHHHHC-------CCCCCCCCCCCC
T ss_conf 999985521843006--002202563077389--998628248-99999999999999848-------815576888775
Q ss_pred CCCCCCCCCCC
Q ss_conf 67257644562
Q gi|254780124|r 228 CRFCRAKVRCP 238 (388)
Q Consensus 228 CrfC~~k~~Cr 238 (388)
T Consensus 195 C~~C~y~~~C~ 205 (206)
T TIGR00372 195 CKFCPYREICL 205 (206)
T ss_pred CCCCCCCCCCC
T ss_conf 77755521258