HHsearch alignment for GI: 254780124 and conserved domain: TIGR01896
>TIGR01896 cas_AF1879 CRISPR-associated protein, Csa1 family; InterPro: IPR009260 This family consists of several archaeal strongly conserved proteins whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis has suggested that they may function as nucleases in DNA repair, similar to RecB (IPR004586 from INTERPRO) . .
Probab=95.03 E-value=0.29 Score=27.76 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=63.7
Q ss_pred EEEEEEEECCCEEEEEEEEEEEEECC--EEE---EEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
Q ss_conf 77553200044058999999998599--799---9981136887674466879999999999843835676513899999
Q gi|254780124|r 99 TEVPLEPFTTEPGATGTADILIFNST--QWI---IVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTII 173 (388)
Q Consensus 99 ~E~~~~~~~~~~~~~GtiD~I~~~dg--~l~---IiDyKtGk~~~v~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~ 173 (388)
T Consensus 164 iP~~~E~~VDGsp-lGLs~~l~Vda~~~~l~~dlVvE~K~G~~---~~~h~LALAGYALAiEa~~e~PvDy-----G~lv 234 (295)
T TIGR01896 164 IPVAVEYKVDGSP-LGLSDRLRVDALVLILPVDLVVEMKVGSY---QERHELALAGYALAIEADLEVPVDY-----GLLV 234 (295)
T ss_pred CCEEEEECCCCCC-CCCCCCHHHHHHHHHCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHHCCCEEE-----EEEE
T ss_conf 6557751268855-46420000654320178317998525873---5677777654588777630783213-----4789
Q ss_pred EEECCCC--CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 8304887--754302--589889999999999999999857765304776678886666-7257644562
Q gi|254780124|r 174 QPRVRTG--SPINEW--VISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSC-RFCRAKVRCP 238 (388)
Q Consensus 174 qpr~~~~--~~vs~~--~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~~~~g~~C-rfC~~k~~Cr 238 (388)
T Consensus 235 ~v~v~~gs~v~~~~~~~~i~-d~lR~---eFLe~RD~~~~~v~~----~~DPGlp-~~C~~~CPF~~~C~ 295 (295)
T TIGR01896 235 YVNVNEGSKVEIKARLVYIS-DDLRR---EFLEERDEVIEIVES----GSDPGLP-PKCPPTCPFYEVCH 295 (295)
T ss_pred EEEEECCCCEEEEEEEEEEC-HHHHH---HHHHHHHHHHHHHHC----CCCCCCC-CCCCCCCCCCCCCC
T ss_conf 99862787436899999847-47779---999988999999864----7742338-88834678435789