HHsearch alignment for GI: 254780124 and conserved domain: TIGR02785
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=98.14 E-value=1e-05 Score=56.99 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=38.5
Q ss_pred CEEEEEEEEEEEEECCEEEEEEEECCCCC---CCCCC---------CCHHHHHHHHHHHHHCCC
Q ss_conf 40589999999985997999981136887---67446---------687999999999984383
Q gi|254780124|r 109 EPGATGTADILIFNSTQWIIVDFKYGAGV---PVKAE---------NNTQLMLYACGALHQYGD 160 (388)
Q Consensus 109 ~~~~~GtiD~I~~~dg~l~IiDyKtGk~~---~v~a~---------~n~QL~lYALgA~~~~~~ 160 (388)
T Consensus 1214 ~~lv~GiIDgy~e~ed~~~L~DYKTD~v~gkf~~~~~~~~~~lk~rY~~Q~~LY~~AL~~~~~~ 1277 (1295)
T TIGR02785 1214 KILVQGIIDGYLESEDGLVLFDYKTDHVEGKFGSSFEGAINELKERYRGQLKLYEKALEEILKK 1277 (1295)
T ss_pred EEEEEEEEEEEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0788741222233368578987213334266788743312478888899999999999998389