HHsearch alignment for GI: 254780124 and conserved domain: TIGR02786
>TIGR02786 addB_alphas double-strand break repair protein AddB; InterPro: IPR014153 AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage . More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of alphaproteobacterial types..
Probab=99.47 E-value=9e-13 Score=103.39 Aligned_cols=156 Identities=21% Similarity=0.149 Sum_probs=96.8
Q ss_pred CCCCCCHHHHHCCCHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---------CCCC
Q ss_conf 618423677871832388621-------389998988999899999999997245765343220104---------5645
Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLES-------KIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVSHQKLT---------FEND 69 (388)
Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~-------~~pd~~S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~~---------~~~~ 69 (388)
T Consensus 814 ~~SVTeie~L~rDPYAiYAk~ILkL~pLdPl~~~p~AA~RG~liH~ile~f~~~~~~~~~~~a~~~L~~~~~~~l~~~~~ 893 (1096)
T TIGR02786 814 KLSVTEIETLRRDPYAIYAKHILKLRPLDPLDRDPEAADRGTLIHDILERFVEEVADPLPADAADVLRKIGRKELASLNL 893 (1096)
T ss_pred CEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 13553200356882177875521677677767883246632299999999987511467321799999999998674247
Q ss_pred C----HHHHHHHHHHHHHHHHHHHCCCC---CCEEEEE--EEEEE------ECCCEEEEEEEEEEEE-ECCEEEEEEEEC
Q ss_conf 3----77578899999999999850378---7368877--55320------0044058999999998-599799998113
Q gi|254780124|r 70 T----RIVDTEMASSVSMVLAYVRTFSG---PFLSETE--VPLEP------FTTEPGATGTADILIF-NSTQWIIVDFKY 133 (388)
Q Consensus 70 ~----~~~~~e~~~~v~~~~~~~r~~~~---~~~ve~E--~~~~~------~~~~~~~~GtiD~I~~-~dg~l~IiDyKt 133 (388)
T Consensus 894 p~~~~a~W~pRf~~~A~~~~~wE~~Rr~~~~~~~~E~~~~~~~~~~~e~~~~~~g~tL~GrADRID~~~~G~~~I~DYKT 973 (1096)
T TIGR02786 894 PPEAEALWWPRFARIADWFADWERARRLDVRRIFAEARGRKELVGERELRAAIRGFTLSGRADRIDRTADGSAAILDYKT 973 (1096)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEECCEEEEEEEEEEEECCCCCEEEEEECC
T ss_conf 87588863889999999999999874434321246300402576413440001452787787677636988479886246
Q ss_pred CCCCC---CCCCCCHHHHHHHHHHHH-HCCCC
Q ss_conf 68876---744668799999999998-43835
Q gi|254780124|r 134 GAGVP---VKAENNTQLMLYACGALH-QYGDI 161 (388)
Q Consensus 134 Gk~~~---v~a~~n~QL~lYALgA~~-~~~~~ 161 (388)
T Consensus 974 G~pPS~kQv~~gl~pQLaLEaAll~~GaF~D~ 1005 (1096)
T TIGR02786 974 GAPPSGKQVRAGLSPQLALEAALLMRGAFKDI 1005 (1096)
T ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88952898850362779999999981888577