>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.

Probab=99.91 E-value=2e-23 Score=173.43 Aligned_cols=235 Identities=14% Similarity=0.073 Sum_probs=130.7 Q ss_pred CCCCCCCCCHHHHHCCCHHHHHHC----CCCCCC---CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----------- Q ss_conf 775618423677871832388621----389998---98899989999999999724576534322010----------- Q gi|254780124|r 3 HHAFLSASSSHRWLKCPIAPTLES----KIPQTT---SIYASEGTFAHNLLAHCLEQGVDAETVSHQKL----------- 64 (388) Q Consensus 3 ~HA~LSpSs~~rwl~CP~s~~Le~----~~pd~~---S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~~----------- 64 (388) T Consensus 594 ~~~~gg~s~L~~qa~CPf~~f~~~rL~~~~~~~~~~gl~~~~rG~i~H~~Le~~~~~l~~~~~L~~l~~~~l~~~i~~a~ 673 (874) T TIGR03623 594 ERISGGTGLLKAQAACPFRAFAQHRLGARALEEPVDGLDALERGTLVHRVLELFWERLKNQAALNALDEAELEQLIAEAI 673 (874) T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHH T ss_conf 43567289999887092999999984998889866677977765999999999999825736454189999999999999 Q ss_pred -----CC-CC----CC----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEE-ECCEEEEE Q ss_conf -----45-64----53----775788999999999998503787368877553200044058999999998-59979999 Q gi|254780124|r 65 -----TF-EN----DT----RIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIF-NSTQWIIV 129 (388) Q Consensus 65 -----~~-~~----~~----~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~-~dg~l~Ii 129 (388) T Consensus 674 ~~~l~~~~~~~~~~~~~~~~~le~~rl~~~l~~~L~~e~~r~pF~v~~~E~~~~~~~~~l~l~~riDRiD~~~dG~~~Ii 753 (874) T TIGR03623 674 GEALAEEEARHSQTFPERFLELEQERLLQLLLEWLELERQRPPFEVVATEQNHSIEIGGLELKVRIDRIDRLADGRRLII 753 (874) T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEECCEEEEEEEECCCCCCCCCEEEE T ss_conf 99999987643434548999999999999999999975567991388721564156757899768744301699988999 Q ss_pred EEECCCCCCCCC----CCCHHHHHHHHHHHHH-CCCCCCCCCEEEEEEEEEECCCC--CCCCCCC--CCHHHHHHHHHHH Q ss_conf 811368876744----6687999999999984-38356765138999998304887--7543025--8988999999999 Q gi|254780124|r 130 DFKYGAGVPVKA----ENNTQLMLYACGALHQ-YGDIFGRPEALTLTIIQPRVRTG--SPINEWV--ISADDLLEKAKEF 200 (388) Q Consensus 130 DyKtGk~~~v~a----~~n~QL~lYALgA~~~-~~~~~~~~~~v~~~I~qpr~~~~--~~vs~~~--~s~eeL~~~~~~v 200 (388) T Consensus 754 DYKTG~~~~~~~~~~r~~~pQLplYa~~~~~~v~~i~~a~v~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 833 (874) T TIGR03623 754 DYKTGAPSVRDWLGERPVEPQLPLYALLAEDEVAGVAFAQVRAGKMKFSGLAEDKELIPGVKAFAKLKAEDEPDSWEEVL 833 (874) T ss_pred EECCCCCCCCHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCCHHHHH T ss_conf 82799998502221784445489999871587551021643157764100002443365554233421333446899999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC-C--CCCCCCCCCCCCCCC Q ss_conf 9999999857765304776678-8--866667257644562 Q gi|254780124|r 201 KERGTLALSLKSKRAVSLEHYG-V--NDDSCRFCRAKVRCP 238 (388) Q Consensus 201 ~~~a~~~~~~~a~~~~~~~~~~-~--~g~~CrfC~~k~~Cr 238 (388) T Consensus 834 ~~w~~-~L~~la~e~~~G~a~v~p~~~~~~C~yCd~~~lCR 873 (874) T TIGR03623 834 ARWRQ-ELTALAEEFSAGYAAVDPKNSETDCRYCDLQPLCR 873 (874) T ss_pred HHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC T ss_conf 99999-99999999968988878999877688798441037

HHsearch alignment for GI: 254780124 and conserved domain: TIGR03623