HHsearch alignment for GI: 254780124 and conserved domain: pfam08696

>pfam08696 Dna2 DNA replication factor Dna2. Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, ( 5'-flap endonuclease) and helicase activities. It is required for Okazaki fragment processing and is involved in DNA repair pathways.

Probab=97.76  E-value=9.4e-05  Score=50.71  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHCCCHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             561842367787183238862138--9998988999899999999997245
Q gi|254780124|r    5 AFLSASSSHRWLKCPIAPTLESKI--PQTTSIYASEGTFAHNLLAHCLEQG   53 (388)
Q Consensus         5 A~LSpSs~~rwl~CP~s~~Le~~~--pd~~S~aA~~GT~~H~llE~~l~~~   53 (388)
T Consensus        58 ~LIS~T~Va~s~~C~RraVL~~r~k~~~~~s~~ml~GtivHelfQ~~l~~~  108 (209)
T pfam08696        58 ILVSGTSVASSIQCPRRAVLQERFKGSGEPSKPMLIGTILHEIFQEALRAN  108 (209)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             425400440424366199999984468987534502343999999999739