HHsearch results for GI: 254780124 and protein with PDBid: 3h4r_A

>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12}
Probab=99.59  E-value=7.5e-15  Score=115.64  Aligned_cols=196  Identities=15%  Similarity=0.049  Sum_probs=108.1

Q ss_pred             CCCCCCHHHHHCCCHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHH--C-CCCCCCCC----CCCCCC----------
Q ss_conf             618423677871832388621--3899989889998999999999972--4-57653432----201045----------
Q gi|254780124|r    6 FLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHCLE--Q-GVDAETVS----HQKLTF----------   66 (388)
Q Consensus         6 ~LSpSs~~rwl~CP~s~~Le~--~~pd~~S~aA~~GT~~H~llE~~l~--~-~l~~~~~~----~~~~~~----------   66 (388)
                      -||+|+++.|+.||..+++..  +.+.++|+++..||++|.+++...+  . ........    ......          
T Consensus        12 ~lS~S~l~~~~~cP~~~~~~~~~~~~~~~t~a~~~Gt~vH~~lle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (265)
T 3h4r_A           12 GISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECAST   91 (265)
T ss_dssp             CBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC----------------------------
T ss_pred             CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             83988899998699999999727899999879986499999885755523432226502331567899999999886632


Q ss_pred             -----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCC--
Q ss_conf             -----6453775788999999999998503787368877553200044058999999998599799998113688767--
Q gi|254780124|r   67 -----ENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPV--  139 (388)
Q Consensus        67 -----~~~~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v--  139 (388)
                           .......-..|...+........-.......+++..+.....+..+.|++|++.  ++...|+||||++....  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~~~kgriD~~~--~d~~~iiD~Kt~~~~~~~~  169 (265)
T 3h4r_A           92 GKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PEFHWIMDVKTTADIQRFK  169 (265)
T ss_dssp             ------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GGGTEEEEEEEESCHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEEEE--CCCCEEEEEEECCCHHHHH
T ss_conf             77644589999999999999848556765034553799898996577758888789985--6885567640036677777


Q ss_pred             ----CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----4466879999999999843835676513899999830488--77543025898899999999999999998
Q gi|254780124|r  140 ----KAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRT--GSPINEWVISADDLLEKAKEFKERGTLAL  208 (388)
Q Consensus       140 ----~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~--~~~vs~~~~s~eeL~~~~~~v~~~a~~~~  208 (388)
                          ....+.|+.+|+.++.+.++..+   + . ..|++.....  .-.+..+.++.+.+..-...+...+....
T Consensus       170 ~~~~~~~Y~~Q~a~Y~~~~~~~~g~~~---~-f-~fi~vek~~~~~~~~v~v~~~~~~~l~~g~~~~~~~l~~~~  239 (265)
T 3h4r_A          170 TAYYDYRYHVQDAFYSDGYEAQFGVQP---T-F-VFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLS  239 (265)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHSSCC---E-E-EEEEEESSCBTTBCCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHCCCC---C-E-EEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf             766513789999999999999629998---4-5-99999865778861389995899999999999999999999