HHsearch results for GI: 254780124 and protein with PDBid: 3h4r_A
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12}
Probab=99.59 E-value=7.5e-15 Score=115.64 Aligned_cols=196 Identities=15% Similarity=0.049 Sum_probs=108.1
Q ss_pred CCCCCCHHHHHCCCHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHH--C-CCCCCCCC----CCCCCC----------
Q ss_conf 618423677871832388621--3899989889998999999999972--4-57653432----201045----------
Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHCLE--Q-GVDAETVS----HQKLTF---------- 66 (388)
Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~--~~pd~~S~aA~~GT~~H~llE~~l~--~-~l~~~~~~----~~~~~~---------- 66 (388)
-||+|+++.|+.||..+++.. +.+.++|+++..||++|.+++...+ . ........ ......
T Consensus 12 ~lS~S~l~~~~~cP~~~~~~~~~~~~~~~t~a~~~Gt~vH~~lle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (265)
T 3h4r_A 12 GISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECAST 91 (265)
T ss_dssp CBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC----------------------------
T ss_pred CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 83988899998699999999727899999879986499999885755523432226502331567899999999886632
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCC--
Q ss_conf -----6453775788999999999998503787368877553200044058999999998599799998113688767--
Q gi|254780124|r 67 -----ENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPV-- 139 (388)
Q Consensus 67 -----~~~~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v-- 139 (388)
.......-..|...+........-.......+++..+.....+..+.|++|++. ++...|+||||++....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~~~kgriD~~~--~d~~~iiD~Kt~~~~~~~~ 169 (265)
T 3h4r_A 92 GKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PEFHWIMDVKTTADIQRFK 169 (265)
T ss_dssp ------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GGGTEEEEEEEESCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEEEE--CCCCEEEEEEECCCHHHHH
T ss_conf 77644589999999999999848556765034553799898996577758888789985--6885567640036677777
Q ss_pred ----CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ----4466879999999999843835676513899999830488--77543025898899999999999999998
Q gi|254780124|r 140 ----KAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRT--GSPINEWVISADDLLEKAKEFKERGTLAL 208 (388)
Q Consensus 140 ----~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~--~~~vs~~~~s~eeL~~~~~~v~~~a~~~~ 208 (388)
....+.|+.+|+.++.+.++..+ + . ..|++..... .-.+..+.++.+.+..-...+...+....
T Consensus 170 ~~~~~~~Y~~Q~a~Y~~~~~~~~g~~~---~-f-~fi~vek~~~~~~~~v~v~~~~~~~l~~g~~~~~~~l~~~~ 239 (265)
T 3h4r_A 170 TAYYDYRYHVQDAFYSDGYEAQFGVQP---T-F-VFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLS 239 (265)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHSSCC---E-E-EEEEEESSCBTTBCCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCC---C-E-EEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 766513789999999999999629998---4-5-99999865778861389995899999999999999999999