Query gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 388 No_of_seqs 219 out of 911 Neff 7.5 Searched_HMMs 23785 Date Sun May 22 21:23:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780124.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3l0a_A Putative exonuclease; R 99.7 7.3E-16 3E-20 122.3 15.9 211 6-242 18-252 (266) 2 3h4r_A Exodeoxyribonuclease 8; 99.6 7.5E-15 3.1E-19 115.6 10.1 196 6-208 12-239 (265) 3 1w36_B RECB, exodeoxyribonucle 98.8 9.6E-09 4E-13 75.5 6.3 47 112-158 1062-1122(1180) 4 1w36_C RECC, exodeoxyribonucle 97.0 0.0091 3.8E-07 36.2 10.6 141 6-157 831-990 (1122) 5 2vld_A NUCS, UPF0286 protein p 73.4 4.1 0.00017 18.8 9.5 16 114-129 48-65 (251) 6 1ru0_A DCOH-like protein dcohm 68.3 3.8 0.00016 19.0 3.3 45 250-316 5-52 (105) 7 2elu_A Zinc finger protein 406 41.2 7.2 0.0003 17.2 1.0 13 224-236 8-20 (37) 8 1klr_A Zinc finger Y-chromosom 35.9 9.3 0.00039 16.5 0.9 10 227-236 4-13 (30) 9 2gig_A Type II restriction enz 30.6 18 0.00074 14.6 1.6 39 114-152 110-155 (257) 10 2xi5_A RNA polymerase L, L-pro 28.4 23 0.00096 13.9 1.9 21 114-134 77-97 (184) 11 2v6u_A Pterin-4A-carbinolamine 23.9 28 0.0012 13.3 2.2 28 289-316 19-49 (104) 12 1a6b_B Momulv, zinc finger pro 23.0 27 0.0011 13.4 1.4 19 223-241 8-30 (40) 13 1r5s_A GAP junction alpha-1 pr 20.2 29 0.0012 13.2 1.1 15 289-303 31-45 (132) No 1 >3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} Probab=99.71 E-value=7.3e-16 Score=122.30 Aligned_cols=211 Identities=17% Similarity=0.138 Sum_probs=117.5 Q ss_pred CCCCCCHHHHHCCCHHH--------HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCHHHHH Q ss_conf 61842367787183238--------86213899989889998999999999972457--653432201045645377578 Q gi|254780124|r 6 FLSASSSHRWLKCPIAP--------TLESKIPQTTSIYASEGTFAHNLLAHCLEQGV--DAETVSHQKLTFENDTRIVDT 75 (388) Q Consensus 6 ~LSpSs~~rwl~CP~s~--------~Le~~~pd~~S~aA~~GT~~H~llE~~l~~~l--~~~~~~~~~~~~~~~~~~~~~ 75 (388) .||.|++.+|+.||... ++....+.++++++..||++|.++|..++... ..+.. ........+ ...-. T Consensus 18 y~S~S~ik~~~~~~~~~~~~a~~~a~~~~~~~~~~t~al~~Gt~vH~~le~~~~~~~~~~~~~~-~~~~~~~~e-~~~~~ 95 (266) T 3l0a_A 18 YMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPEIF-TQKGELKAN-FKQAE 95 (266) T ss_dssp CEEHHHHHHHHCBTTBCCCHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHTCHHHHHHHCGGGB-CTTSSBCHH-HHHHH T ss_pred EECHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCC-CCCCHHHHH-HHHHH T ss_conf 1269899998439311002688999860777889987998718999986574553420184201-333144899-99999 Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCC-------------- Q ss_conf 899999999999850378736887755320004405899999999859979999811368876744-------------- Q gi|254780124|r 76 EMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKA-------------- 141 (388) Q Consensus 76 e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a-------------- 141 (388) .|.+.+...- ..... ...+.|+.+...+.+..+.|++|++..+ + .|+|+||.+...... T Consensus 96 ~m~~~~~~~~-~~~~~---~~~~~E~~~~~~~~gv~~kg~iD~i~~~-~--~ivDlKtt~~~~~~~~~~~~~~~~~~~~~ 168 (266) T 3l0a_A 96 EIIARIERDE-YFMKY---MSGQKQVIMTGELFGAKWKIKMDSYIPG-V--AIVDLKVMASITDLKWVKDIGYLDFVRYW 168 (266) T ss_dssp HHHHHHHTCH-HHHHH---TTSEEEEEEEEEETTEEEEEEEEEEETT-T--EEEEEEEESCSSCCEEETTTEEECHHHHT T ss_pred HHHHHHHHCC-HHHHH---CCCCCEEEEEEEECCEEEEEEEEEEECC-C--CEEEEEEEECCCCCCCCCCCCHHHHHHHC T ss_conf 9999999670-03555---1577247899977585874067899568-9--72676774115632244321035577752 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 66879999999999843835676513899999830488775430258988999999999999999985776530477667 Q gi|254780124|r 142 ENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHY 221 (388) Q Consensus 142 ~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~~~~vs~~~~s~eeL~~~~~~v~~~a~~~~~~~a~~~~~~~~~ 221 (388) ....||.+|+.+..+.++... . ..++..-......+..+.++.+.+..-.+.+...+..+.... .++.. T Consensus 169 ~Y~~Q~a~Y~~~l~~~~g~~~---~---~~~v~v~k~~p~~~~~~~~~~~~l~~~~~~v~~~i~~i~~~~-----~~~~~ 237 (266) T 3l0a_A 169 GYDIQGAVYQEIVRQNTGEKL---P---FFIAGATKQTEPDIRIIHVTDNYLQEALHMVEMNMPRILRVK-----NGEVE 237 (266) T ss_dssp THHHHHHHHHHHHHHHHSCCC---C---EEEEEEECSSSCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH-----TTSSC T ss_pred CHHHHHHHHHHHHHHHHCCCC---C---EEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH-----CCCCC T ss_conf 889999999999999868986---3---799999788887604897798999999999999999999997-----28968 Q ss_pred CCCCCCCCCCCCCCCCCHHHH Q ss_conf 888666672576445620134 Q gi|254780124|r 222 GVNDDSCRFCRAKVRCPALSR 242 (388) Q Consensus 222 ~~~g~~CrfC~~k~~Cra~a~ 242 (388) + ++|.+|+| ||..-+ T Consensus 238 p---~~C~~CdY---Cr~~k~ 252 (266) T 3l0a_A 238 P---DRCELCDC---CRHNRV 252 (266) T ss_dssp C---CCCSCSHH---HHHHCC T ss_pred C---CCCCCCCC---CHHHHH T ss_conf 9---98998987---720300 No 2 >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} Probab=99.59 E-value=7.5e-15 Score=115.64 Aligned_cols=196 Identities=15% Similarity=0.049 Sum_probs=108.1 Q ss_pred CCCCCCHHHHHCCCHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHH--C-CCCCCCCC----CCCCCC---------- Q ss_conf 618423677871832388621--3899989889998999999999972--4-57653432----201045---------- Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHCLE--Q-GVDAETVS----HQKLTF---------- 66 (388) Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~--~~pd~~S~aA~~GT~~H~llE~~l~--~-~l~~~~~~----~~~~~~---------- 66 (388) -||+|+++.|+.||..+++.. +.+.++|+++..||++|.+++...+ . ........ ...... T Consensus 12 ~lS~S~l~~~~~cP~~~~~~~~~~~~~~~t~a~~~Gt~vH~~lle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (265) T 3h4r_A 12 GISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECAST 91 (265) T ss_dssp CBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC---------------------------- T ss_pred CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 83988899998699999999727899999879986499999885755523432226502331567899999999886632 Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCC-- Q ss_conf -----6453775788999999999998503787368877553200044058999999998599799998113688767-- Q gi|254780124|r 67 -----ENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPV-- 139 (388) Q Consensus 67 -----~~~~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v-- 139 (388) .......-..|...+........-.......+++..+.....+..+.|++|++. ++...|+||||++.... T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~~~kgriD~~~--~d~~~iiD~Kt~~~~~~~~ 169 (265) T 3h4r_A 92 GKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETGILCRCRPDKII--PEFHWIMDVKTTADIQRFK 169 (265) T ss_dssp ------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCEEEECTTTCCEEEECCSEEE--GGGTEEEEEEEESCHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEEEEEE--CCCCEEEEEEECCCHHHHH T ss_conf 77644589999999999999848556765034553799898996577758888789985--6885567640036677777 Q ss_pred ----CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf ----4466879999999999843835676513899999830488--77543025898899999999999999998 Q gi|254780124|r 140 ----KAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRT--GSPINEWVISADDLLEKAKEFKERGTLAL 208 (388) Q Consensus 140 ----~a~~n~QL~lYALgA~~~~~~~~~~~~~v~~~I~qpr~~~--~~~vs~~~~s~eeL~~~~~~v~~~a~~~~ 208 (388) ....+.|+.+|+.++.+.++..+ + . ..|++..... .-.+..+.++.+.+..-...+...+.... T Consensus 170 ~~~~~~~Y~~Q~a~Y~~~~~~~~g~~~---~-f-~fi~vek~~~~~~~~v~v~~~~~~~l~~g~~~~~~~l~~~~ 239 (265) T 3h4r_A 170 TAYYDYRYHVQDAFYSDGYEAQFGVQP---T-F-VFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLS 239 (265) T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHSSCC---E-E-EEEEEESSCBTTBCCEEEEECCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCC---C-E-EEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHH T ss_conf 766513789999999999999629998---4-5-99999865778861389995899999999999999999999 No 3 >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Probab=98.78 E-value=9.6e-09 Score=75.49 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=35.0 Q ss_pred EEEEEEEEEEECCEEEEEEEECCC---CCCCC-----------CCCCHHHHHHHHHHHHHC Q ss_conf 899999999859979999811368---87674-----------466879999999999843 Q gi|254780124|r 112 ATGTADILIFNSTQWIIVDFKYGA---GVPVK-----------AENNTQLMLYACGALHQY 158 (388) Q Consensus 112 ~~GtiD~I~~~dg~l~IiDyKtGk---~~~v~-----------a~~n~QL~lYALgA~~~~ 158 (388) +.|.||+|...+|.+.||||||.+ ..... .....||.+|++++.+.+ T Consensus 1062 l~G~IDlvf~~dg~~~IvDYKTd~lg~~~~~y~~~~l~~~m~~~~Y~lQ~~lY~~AL~r~L 1122 (1180) T 1w36_B 1062 LKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYL 1122 (1180) T ss_dssp EEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHH T ss_pred EEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 9999999999999999997278998998410299999999887861999999999999997 No 4 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C* Probab=97.04 E-value=0.0091 Score=36.22 Aligned_cols=141 Identities=11% Similarity=0.009 Sum_probs=78.6 Q ss_pred CCCCCCHHHHHCCCHHHHHHCCC----CCC-----C-----CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----CCCC Q ss_conf 61842367787183238862138----999-----8-----9889998999999999972457653432201----0456 Q gi|254780124|r 6 FLSASSSHRWLKCPIAPTLESKI----PQT-----T-----SIYASEGTFAHNLLAHCLEQGVDAETVSHQK----LTFE 67 (388) Q Consensus 6 ~LSpSs~~rwl~CP~s~~Le~~~----pd~-----~-----S~aA~~GT~~H~llE~~l~~~l~~~~~~~~~----~~~~ 67 (388) .+|+|...+|..||..++|+... ++. . -.....+++.|.+++..+...-... ..... .... T Consensus 831 ~ls~s~L~~f~~~P~~~fl~~~L~~~~~~~~~~~~d~Ep~~ld~L~~~~l~~~ll~~~l~~~~~~~-~~~~~~~~g~LP~ 909 (1122) T 1w36_C 831 TVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAER-LFRRFRAAGDLPY 909 (1122) T ss_dssp CEEHHHHHHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHTCSCS T ss_pred CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCC T ss_conf 448999999997968999997448888621224555686667706552499999999871899999-9999997599998 Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHH Q ss_conf 45-37757889999999999985037873688775532000440589999999985997999981136887674466879 Q gi|254780124|r 68 ND-TRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQ 146 (388) Q Consensus 68 ~~-~~~~~~e~~~~v~~~~~~~r~~~~~~~ve~E~~~~~~~~~~~~~GtiD~I~~~dg~l~IiDyKtGk~~~v~a~~n~Q 146 (388) .. .....+.....++.+.+.+....... .++.++...++..+.|++|.|.- ++ ++.+++|+- .+.+-.+ T Consensus 910 g~~g~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~l~~~~~~L~G~l~~v~~--~~--~v~~~~~~~---~~~~~l~ 979 (1122) T 1w36_C 910 GAFGEIFWETQCQEMQQLADRVIACRQPG---QSMEIDLACNGVQITGWLPQVQP--DG--LLRWRPSLL---SVAQGMQ 979 (1122) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCC---EEEEEEEEETTEEEEEEEEEECS--SE--EEEECSSCC---CHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCEEEEEEECCEEEEEEECCCCC--CC--EEEEEECCC---CHHHHHH T ss_conf 25569999999999999999998706888---86348984098899998898626--83--599972789---8788999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999984 Q gi|254780124|r 147 LMLYACGALHQ 157 (388) Q Consensus 147 L~lYALgA~~~ 157 (388) +-+.-|.+... T Consensus 980 ~wl~hL~~~a~ 990 (1122) T 1w36_C 980 LWLEHLVYCAS 990 (1122) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHC T ss_conf 99999999826 No 5 >2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} Probab=73.43 E-value=4.1 Score=18.81 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=7.1 Q ss_pred EEEEEEEE--ECCEEEEE Q ss_conf 99999998--59979999 Q gi|254780124|r 114 GTADILIF--NSTQWIIV 129 (388) Q Consensus 114 GtiD~I~~--~dg~l~Ii 129 (388) +.+||+++ .||++.|. T Consensus 48 ~~~~Rli~iK~DGsvlvH 65 (251) T 2vld_A 48 GEGDRIIIIKPDGSFLIH 65 (251) T ss_dssp EEEEEEEEECTTSCEEEE T ss_pred CCCCEEEEECCCCCEEEE T ss_conf 888589999179728996 No 6 >1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1 Probab=68.30 E-value=3.8 Score=18.98 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=29.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCC-CCCCC--CHHHHHHHH Q ss_conf 22005999999999954389999999999999999978984785232058887-86116--989999999 Q gi|254780124|r 250 KDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGRKG-NRSFK--DINRAQELL 316 (388) Q Consensus 250 ~~p~~l~~~e~~~~l~~~~~l~~w~~~v~~~a~~~~~~G~~~~g~Klv~gr~~-~r~~~--d~~~~~~~l 316 (388) .+++.||.+|+.+.|...+ .|||++++++.. .|.|+ |=..+..-+ T Consensus 5 ~~~~~Lt~~ei~~~L~~l~----------------------~~GW~~~~~~~~L~r~f~F~~f~~a~~F~ 52 (105) T 1ru0_A 5 SDAQWLTAEERDQLIPGLK----------------------AAGWSELSERDAIYKEFSFKNFNQAFGFM 52 (105) T ss_dssp -CCSBCCHHHHHHHHHHHH----------------------HTTCEECSSSSCEEEEEECSSHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHCC----------------------CCCCEEECCCCEEEEEEEECCHHHHHHHH T ss_conf 6876499999999885488----------------------89989977999499999969999999999 No 7 >2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A Probab=41.16 E-value=7.2 Score=17.16 Aligned_cols=13 Identities=38% Similarity=0.956 Sum_probs=9.4 Q ss_pred CCCCCCCCCCCCC Q ss_conf 8666672576445 Q gi|254780124|r 224 NDDSCRFCRAKVR 236 (388) Q Consensus 224 ~g~~CrfC~~k~~ 236 (388) -..|||||+-|-. T Consensus 8 ikqhcrfckkkys 20 (37) T 2elu_A 8 IKQHCRFCKKKYS 20 (37) T ss_dssp CCCEETTTTEECS T ss_pred HHHHHHHHHHHHH T ss_conf 8999999998878 No 8 >1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A Probab=35.88 E-value=9.3 Score=16.45 Aligned_cols=10 Identities=20% Similarity=0.966 Sum_probs=8.2 Q ss_pred CCCCCCCCCC Q ss_conf 6672576445 Q gi|254780124|r 227 SCRFCRAKVR 236 (388) Q Consensus 227 ~CrfC~~k~~ 236 (388) .|+||.||.. T Consensus 4 ~cqyc~yrsa 13 (30) T 1klr_A 4 QCQYCEFRSA 13 (30) T ss_dssp CCSSSSCCCS T ss_pred CCCCCCCCCC T ss_conf 0441300136 No 9 >2gig_A Type II restriction enzyme hincii; protein DNA complex, indirect readout, DNA intercalation, endonuclease, hydrolase/DNA complex; 1.83A {Haemophilus influenzae} PDB: 2gih_A 2gii_A 2gij_A 3e3y_A 3e40_A 3e41_A 3e42_A 3e43_A 3e44_A 3e45_A 1tx3_A 1tw8_A 1kc6_A 1xhu_A 1xhv_A 2gie_A 2aud_A Probab=30.58 E-value=18 Score=14.62 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=26.3 Q ss_pred EEEEEEEEECCEEEEEEEECCCCCC-------CCCCCCHHHHHHHH Q ss_conf 9999999859979999811368876-------74466879999999 Q gi|254780124|r 114 GTADILIFNSTQWIIVDFKYGAGVP-------VKAENNTQLMLYAC 152 (388) Q Consensus 114 GtiD~I~~~dg~l~IiDyKtGk~~~-------v~a~~n~QL~lYAL 152 (388) -|+|.+++.|+-..|||-||-.-.+ .+|..-.|+..|-+ T Consensus 110 DtADiL~vkd~fyeiiDVKTrNisKkaq~PNIISA~kLAq~Ca~Mi 155 (257) T 2gig_A 110 DTADILLVKDQFYELLDVKTRNISKSAFAPNIISAYKLAQTCAKMI 155 (257) T ss_dssp CSCSEEEEETTEEEEEEEEEEETTSCCCCCEEEEHHHHHHHHHHHH T ss_pred CCCCEEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 8512788610003240011032344469974334999999999984 No 10 >2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A* Probab=28.35 E-value=23 Score=13.87 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=17.8 Q ss_pred EEEEEEEEECCEEEEEEEECC Q ss_conf 999999985997999981136 Q gi|254780124|r 114 GTADILIFNSTQWIIVDFKYG 134 (388) Q Consensus 114 GtiD~I~~~dg~l~IiDyKtG 134 (388) =|-|--++.++.+.|+|||-. T Consensus 77 ~TPDNYi~~~~~LyIiDyKVS 97 (184) T 2xi5_A 77 ITPDNYLYINNVLYIIDYKVS 97 (184) T ss_dssp CCCSEEEEETTEEEEEEEEEC T ss_pred CCCCCEEEECCEEEEEEEEEE T ss_conf 588756998999999998887 No 11 >2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A* Probab=23.93 E-value=28 Score=13.29 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=16.2 Q ss_pred CCCCCCEECCCCCC-CCCCC--CHHHHHHHH Q ss_conf 84785232058887-86116--989999999 Q gi|254780124|r 289 DEIQGYQLVEGRKG-NRSFK--DINRAQELL 316 (388) Q Consensus 289 ~~~~g~Klv~gr~~-~r~~~--d~~~~~~~l 316 (388) +.+|||++++|+.+ .|+|+ |=..+..-+ T Consensus 19 ~~lp~W~~~~~~~~L~r~f~f~~f~~a~~F~ 49 (104) T 2v6u_A 19 KTVPQWHLTDGHLSIKRKFQFSDFNEAWGFM 49 (104) T ss_dssp TTSTTSEECGGGCCEEEEEECSSHHHHHHHH T ss_pred CCCCCCEEECCCCEEEEEEEECCHHHHHHHH T ss_conf 6698987989905699999979999999999 No 12 >1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1 Probab=23.00 E-value=27 Score=13.42 Aligned_cols=19 Identities=32% Similarity=0.971 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCC----CCCHHH Q ss_conf 8866667257644----562013 Q gi|254780124|r 223 VNDDSCRFCRAKV----RCPALS 241 (388) Q Consensus 223 ~~g~~CrfC~~k~----~Cra~a 241 (388) ...++|-||+-++ -||.+- T Consensus 8 l~kdQCaYcke~GHW~rdCPkkp 30 (40) T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKP 30 (40) T ss_dssp CCSSSCSSSCCTTCCTTSCSSSC T ss_pred CCCHHHHHHHHCCCHHHHCCCCC T ss_conf 66015366653460543186678 No 13 >1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1 Probab=20.23 E-value=29 Score=13.18 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=11.2 Q ss_pred CCCCCCEECCCCCCC Q ss_conf 847852320588878 Q gi|254780124|r 289 DEIQGYQLVEGRKGN 303 (388) Q Consensus 289 ~~~~g~Klv~gr~~~ 303 (388) ..-||||||.|-.+| T Consensus 31 msppgYkl~T~dr~n 45 (132) T 1r5s_A 31 MSPPGYKLVTGDRNN 45 (132) T ss_dssp CCCCCCCSCTTCCSS T ss_pred CCCCCCEEEECCCCC T ss_conf 788861434215677 Done!