RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780124|ref|YP_003064537.1| hypothetical protein
CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62]
(388 letters)
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions..
Length = 365
Score = 33.7 bits (78), Expect = 0.080
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 333 KELEQLYKEQKVSDEFWEELQELITRGDGKP 363
+ELEQ + +++ +F EEL+EL G+P
Sbjct: 4 EELEQEFSKERYDPDFPEELRELYKDYVGRP 34
>gnl|CDD|30482 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 32.5 bits (74), Expect = 0.21
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 333 KELEQLYKEQKVSDEFWEELQELITRGDGKP 363
+ELE+ Y++ K EF EL L+ G+P
Sbjct: 26 EELEKAYEKAKNDPEFQAELDYLLKDYAGRP 56
>gnl|CDD|39479 KOG4278, KOG4278, KOG4278, Protein tyrosine kinase [Signal
transduction mechanisms].
Length = 1157
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSE 383
+ + E ++ +SDE +EL + + P+ +P+ +T +S + E
Sbjct: 512 SFAEIHQAFETMFSSSSISDEVQKELGKNNDKKSVVPLPRLPILPSKTRTLRSNVEE 568
>gnl|CDD|33956 COG4231, COG4231, Indolepyruvate ferredoxin oxidoreductase, alpha
and beta subunits [Energy production and conversion].
Length = 640
Score = 29.5 bits (66), Expect = 1.7
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 176 RVRTGSPINEWVISADDLLEKAKEFKE------RGTLALS--LKSKRAVSLEHYGVNDDS 227
V T P + V + +++A E + AL + + + Y V+++
Sbjct: 521 DVETVDPYD--VKELSEAIKEALEVPGPSVIIAKRECALEKRRRKRGGMKAPKYFVDEEK 578
Query: 228 C---RFCRAKVRCPALS 241
C C CP++
Sbjct: 579 CTGCGDCIVLSGCPSIE 595
>gnl|CDD|39109 KOG3906, KOG3906, KOG3906, Tryptophan 2,3-dioxygenase [Amino acid
transport and metabolism].
Length = 399
Score = 29.2 bits (65), Expect = 1.8
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 300 RKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
+ + +KD+ +EL T + EE + LE+ + FW + ++ + R
Sbjct: 169 KYNAQHYKDVFNDEELKTLNVSEEEKSLLELVESWLERTPGLESTGFNFWIKYEKSVNRY 228
Query: 360 DGKPVIAPRDIPTNKQTQKSQLSEFE 385
D P+N + + QL+E+
Sbjct: 229 LEDLAKQAAD-PSNTEEKAKQLAEYH 253
>gnl|CDD|36106 KOG0888, KOG0888, KOG0888, Nucleoside diphosphate kinase
[Nucleotide transport and metabolism].
Length = 156
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 324 AFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVIA 366
A K + + + LE+ Y + K S F+ L E ++ G PV+A
Sbjct: 38 ALKLVQLSKELLEEHYSDLK-SKPFFPGLVEYMSSG---PVVA 76
>gnl|CDD|37285 KOG2074, KOG2074, KOG2074, RNA polymerase II transcription
initiation/nucleotide excision repair factor TFIIH,
subunit TFB1 [Transcription, Replication, recombination
and repair].
Length = 548
Score = 28.9 bits (64), Expect = 2.6
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 274 VKACEDEMFKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPK 333
+K + F N D ++ V+ K + + + T+ E +L+
Sbjct: 69 LKQGDTHNFSFPNENDAVKERDAVKDTKALALQELLPNFESKATAKELELKQS-LLQENP 127
Query: 334 ELEQLYKEQKVS-----DEFW 349
L +LYKE VS +EFW
Sbjct: 128 VLFKLYKELVVSKVLSPEEFW 148
>gnl|CDD|144066 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 28.6 bits (65), Expect = 2.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 324 AFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVIA 366
A K + T ++ E+ Y E K F+ L E +T G PV+A
Sbjct: 33 ALKMLQLTREQAEEHYAEHK-GKPFFPGLVEFMTSG---PVVA 71
>gnl|CDD|31531 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 28.3 bits (63), Expect = 3.7
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 274 VKACEDEMFKRLNA-GDEIQGY--QLVEGRKGNRSFKDINRAQELL-----TSVLGEEAF 325
+K DE+ +L E + + E G RS K + R E L TSVL E
Sbjct: 74 LKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE 133
Query: 326 KRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVIA 366
+ +++ KEL + ++ K + E E+L+EL D A
Sbjct: 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKA 174
>gnl|CDD|39897 KOG4699, KOG4699, KOG4699, Preprotein translocase subunit Sec66
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 180
Score = 27.3 bits (60), Expect = 8.1
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 321 GEEAFKRILKTPKELEQ---LYKEQKVSDEFWEELQEL 355
E +R++K K++E LY++ + +E WE E
Sbjct: 73 AAEFKRRVMKLKKDMEVLNTLYEDGMIGEEHWERFNEE 110
>gnl|CDD|35097 COG5538, SEC66, Endoplasmic reticulum translocation complex,
subunit SEC66 [Cell motility and secretion].
Length = 180
Score = 27.3 bits (60), Expect = 8.1
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 321 GEEAFKRILKTPKELEQ---LYKEQKVSDEFWEELQEL 355
E +R++K K++E LY++ + +E WE E
Sbjct: 73 AAEFKRRVMKLKKDMEVLNTLYEDGMIGEEHWERFNEE 110
>gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the
WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a
protein implicated in Wolf-Hirschhorn syndrome (WHS).
When translocated, WHSC1 plays a role in lymphoid
multiple myeloma (MM) disease, also known as
plasmacytoma. WHCS1 proteins typically contain two
copies of the PWWP domain. The PWWP domain, named for a
conserved Pro-Trp-Trp-Pro motif, is a small domain
consisting of 100-150 amino acids. The PWWP domain is
found in numerous proteins that are involved in cell
division, growth and differentiation. Most PWWP-domain
proteins seem to be nuclear, often DNA-binding, proteins
that function as transcription factors regulating a
variety of developmental processes..
Length = 95
Score = 27.3 bits (61), Expect = 8.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 364 VIAPRDIPTNKQTQKSQLSEFEV 386
+ PR++P N Q + + EF V
Sbjct: 21 ICDPREVPPNIQVLRHCIGEFCV 43
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,434,590
Number of extensions: 225142
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 21
Length of query: 388
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 292
Effective length of database: 4,189,273
Effective search space: 1223267716
Effective search space used: 1223267716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)